Multiple sequence alignment - TraesCS1D01G026500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G026500 chr1D 100.000 3264 0 0 1 3264 10739364 10742627 0.000000e+00 6028.0
1 TraesCS1D01G026500 chr1D 94.444 36 2 0 1265 1300 419463011 419463046 4.550000e-04 56.5
2 TraesCS1D01G026500 chr1A 92.133 2110 100 25 262 2354 12917901 12919961 0.000000e+00 2916.0
3 TraesCS1D01G026500 chr1A 87.500 88 11 0 2438 2525 12929441 12929528 5.760000e-18 102.0
4 TraesCS1D01G026500 chr1A 94.444 36 2 0 1265 1300 516370067 516370102 4.550000e-04 56.5
5 TraesCS1D01G026500 chr1B 92.408 1528 77 18 344 1841 16215808 16217326 0.000000e+00 2143.0
6 TraesCS1D01G026500 chr1B 88.288 1349 95 33 344 1685 23979579 23978287 0.000000e+00 1557.0
7 TraesCS1D01G026500 chr1B 87.306 709 64 15 1978 2674 23970895 23970201 0.000000e+00 787.0
8 TraesCS1D01G026500 chr1B 85.756 688 50 30 1969 2633 16217339 16218001 0.000000e+00 684.0
9 TraesCS1D01G026500 chr1B 92.771 166 11 1 1681 1846 23971133 23970969 4.210000e-59 239.0
10 TraesCS1D01G026500 chr1B 84.314 153 22 2 3011 3162 23967845 23967694 7.300000e-32 148.0
11 TraesCS1D01G026500 chr1B 86.207 116 11 3 2721 2831 23970073 23969958 1.590000e-23 121.0
12 TraesCS1D01G026500 chr5D 83.001 1606 155 72 283 1841 241275401 241276935 0.000000e+00 1345.0
13 TraesCS1D01G026500 chr5D 85.070 355 28 8 2026 2376 241277134 241277467 4.030000e-89 339.0
14 TraesCS1D01G026500 chr5B 82.827 1613 159 69 275 1841 262353422 262351882 0.000000e+00 1336.0
15 TraesCS1D01G026500 chr5B 86.290 372 25 8 2026 2393 262351675 262351326 6.610000e-102 381.0
16 TraesCS1D01G026500 chr5A 82.834 1602 158 64 275 1841 311000352 311001871 0.000000e+00 1327.0
17 TraesCS1D01G026500 chr5A 85.915 355 26 6 2026 2376 311002072 311002406 1.110000e-94 357.0
18 TraesCS1D01G026500 chr3A 83.206 262 39 4 1400 1657 32100768 32100508 5.440000e-58 235.0
19 TraesCS1D01G026500 chr3B 74.483 435 95 13 1399 1828 597840779 597840356 1.200000e-39 174.0
20 TraesCS1D01G026500 chr3D 78.077 260 55 2 1399 1657 454219631 454219889 2.610000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G026500 chr1D 10739364 10742627 3263 False 6028.00 6028 100.0000 1 3264 1 chr1D.!!$F1 3263
1 TraesCS1D01G026500 chr1A 12917901 12919961 2060 False 2916.00 2916 92.1330 262 2354 1 chr1A.!!$F1 2092
2 TraesCS1D01G026500 chr1B 23978287 23979579 1292 True 1557.00 1557 88.2880 344 1685 1 chr1B.!!$R1 1341
3 TraesCS1D01G026500 chr1B 16215808 16218001 2193 False 1413.50 2143 89.0820 344 2633 2 chr1B.!!$F1 2289
4 TraesCS1D01G026500 chr1B 23967694 23971133 3439 True 323.75 787 87.6495 1681 3162 4 chr1B.!!$R2 1481
5 TraesCS1D01G026500 chr5D 241275401 241277467 2066 False 842.00 1345 84.0355 283 2376 2 chr5D.!!$F1 2093
6 TraesCS1D01G026500 chr5B 262351326 262353422 2096 True 858.50 1336 84.5585 275 2393 2 chr5B.!!$R1 2118
7 TraesCS1D01G026500 chr5A 311000352 311002406 2054 False 842.00 1327 84.3745 275 2376 2 chr5A.!!$F1 2101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.828022 TGTGAACTTCCGACAGTGGT 59.172 50.000 0.0 0.0 0.00 4.16 F
201 202 1.072331 ACCAAGTAGGAGTTGCACTGG 59.928 52.381 0.0 0.0 41.22 4.00 F
1083 1167 0.598680 GCGACTTCTCCATCATCGGG 60.599 60.000 0.0 0.0 33.45 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1083 1167 0.034283 ACAGGTCCTCCTCGGAGTAC 60.034 60.000 11.76 6.2 44.2 2.73 R
1401 1485 1.219393 GCCCTTCTTCCTCCAGTCG 59.781 63.158 0.00 0.0 0.0 4.18 R
2468 2674 1.266175 ACCTCACTCGACACAGTAACG 59.734 52.381 0.00 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.442632 TCAATGTATTGAATCTTCATGTCCTC 57.557 34.615 4.89 0.00 43.26 3.71
45 46 8.270030 TCAATGTATTGAATCTTCATGTCCTCT 58.730 33.333 4.89 0.00 43.26 3.69
46 47 8.343366 CAATGTATTGAATCTTCATGTCCTCTG 58.657 37.037 0.00 0.00 40.14 3.35
47 48 6.351711 TGTATTGAATCTTCATGTCCTCTGG 58.648 40.000 0.00 0.00 37.00 3.86
48 49 4.916041 TTGAATCTTCATGTCCTCTGGT 57.084 40.909 0.00 0.00 37.00 4.00
49 50 4.916041 TGAATCTTCATGTCCTCTGGTT 57.084 40.909 0.00 0.00 31.01 3.67
50 51 4.582869 TGAATCTTCATGTCCTCTGGTTG 58.417 43.478 0.00 0.00 31.01 3.77
51 52 4.286808 TGAATCTTCATGTCCTCTGGTTGA 59.713 41.667 0.00 0.00 31.01 3.18
52 53 3.685139 TCTTCATGTCCTCTGGTTGAC 57.315 47.619 0.00 0.00 0.00 3.18
53 54 2.303022 TCTTCATGTCCTCTGGTTGACC 59.697 50.000 0.00 0.00 0.00 4.02
54 55 0.984230 TCATGTCCTCTGGTTGACCC 59.016 55.000 0.00 0.00 34.29 4.46
55 56 0.987294 CATGTCCTCTGGTTGACCCT 59.013 55.000 0.00 0.00 34.29 4.34
56 57 1.352352 CATGTCCTCTGGTTGACCCTT 59.648 52.381 0.00 0.00 34.29 3.95
57 58 1.518367 TGTCCTCTGGTTGACCCTTT 58.482 50.000 0.00 0.00 34.29 3.11
58 59 2.696775 TGTCCTCTGGTTGACCCTTTA 58.303 47.619 0.00 0.00 34.29 1.85
59 60 2.370849 TGTCCTCTGGTTGACCCTTTAC 59.629 50.000 0.00 0.00 34.29 2.01
60 61 2.638363 GTCCTCTGGTTGACCCTTTACT 59.362 50.000 0.00 0.00 34.29 2.24
61 62 3.072622 GTCCTCTGGTTGACCCTTTACTT 59.927 47.826 0.00 0.00 34.29 2.24
62 63 3.072476 TCCTCTGGTTGACCCTTTACTTG 59.928 47.826 0.00 0.00 34.29 3.16
63 64 3.412386 CTCTGGTTGACCCTTTACTTGG 58.588 50.000 0.00 0.00 34.29 3.61
64 65 1.886542 CTGGTTGACCCTTTACTTGGC 59.113 52.381 0.00 0.00 34.29 4.52
65 66 1.215673 TGGTTGACCCTTTACTTGGCA 59.784 47.619 0.00 0.00 34.29 4.92
66 67 2.312390 GGTTGACCCTTTACTTGGCAA 58.688 47.619 0.00 0.00 0.00 4.52
67 68 2.897326 GGTTGACCCTTTACTTGGCAAT 59.103 45.455 0.00 0.00 0.00 3.56
68 69 3.306019 GGTTGACCCTTTACTTGGCAATG 60.306 47.826 0.00 0.00 0.00 2.82
69 70 3.517296 TGACCCTTTACTTGGCAATGA 57.483 42.857 0.00 0.00 0.00 2.57
70 71 3.838565 TGACCCTTTACTTGGCAATGAA 58.161 40.909 0.00 0.00 0.00 2.57
71 72 4.219115 TGACCCTTTACTTGGCAATGAAA 58.781 39.130 0.00 3.51 0.00 2.69
72 73 4.837860 TGACCCTTTACTTGGCAATGAAAT 59.162 37.500 0.00 0.00 0.00 2.17
73 74 5.306678 TGACCCTTTACTTGGCAATGAAATT 59.693 36.000 0.00 0.00 36.63 1.82
90 91 6.849085 TGAAATTGCCTTATTTTAGCTGGA 57.151 33.333 0.00 0.00 0.00 3.86
91 92 6.630071 TGAAATTGCCTTATTTTAGCTGGAC 58.370 36.000 0.00 0.00 0.00 4.02
92 93 6.437162 TGAAATTGCCTTATTTTAGCTGGACT 59.563 34.615 0.00 0.00 0.00 3.85
93 94 5.841957 ATTGCCTTATTTTAGCTGGACTG 57.158 39.130 0.00 0.00 0.00 3.51
94 95 3.620488 TGCCTTATTTTAGCTGGACTGG 58.380 45.455 0.00 0.00 0.00 4.00
95 96 3.010138 TGCCTTATTTTAGCTGGACTGGT 59.990 43.478 0.00 0.00 0.00 4.00
96 97 4.226394 TGCCTTATTTTAGCTGGACTGGTA 59.774 41.667 0.00 0.00 0.00 3.25
97 98 5.104109 TGCCTTATTTTAGCTGGACTGGTAT 60.104 40.000 0.00 0.00 0.00 2.73
98 99 5.470437 GCCTTATTTTAGCTGGACTGGTATC 59.530 44.000 0.00 0.00 0.00 2.24
99 100 6.591935 CCTTATTTTAGCTGGACTGGTATCA 58.408 40.000 0.00 0.00 0.00 2.15
100 101 7.054124 CCTTATTTTAGCTGGACTGGTATCAA 58.946 38.462 0.00 0.00 0.00 2.57
101 102 7.556275 CCTTATTTTAGCTGGACTGGTATCAAA 59.444 37.037 0.00 0.00 0.00 2.69
102 103 9.125026 CTTATTTTAGCTGGACTGGTATCAAAT 57.875 33.333 0.00 0.00 0.00 2.32
103 104 7.961326 ATTTTAGCTGGACTGGTATCAAATT 57.039 32.000 0.00 0.00 0.00 1.82
104 105 6.757897 TTTAGCTGGACTGGTATCAAATTG 57.242 37.500 0.00 0.00 0.00 2.32
105 106 4.307032 AGCTGGACTGGTATCAAATTGT 57.693 40.909 0.00 0.00 0.00 2.71
106 107 4.666512 AGCTGGACTGGTATCAAATTGTT 58.333 39.130 0.00 0.00 0.00 2.83
107 108 5.815581 AGCTGGACTGGTATCAAATTGTTA 58.184 37.500 0.00 0.00 0.00 2.41
108 109 5.648092 AGCTGGACTGGTATCAAATTGTTAC 59.352 40.000 5.82 5.82 0.00 2.50
109 110 5.163652 GCTGGACTGGTATCAAATTGTTACC 60.164 44.000 20.69 20.69 41.07 2.85
110 111 4.938832 TGGACTGGTATCAAATTGTTACCG 59.061 41.667 21.51 18.60 42.70 4.02
111 112 4.939439 GGACTGGTATCAAATTGTTACCGT 59.061 41.667 21.51 20.70 42.70 4.83
112 113 5.163794 GGACTGGTATCAAATTGTTACCGTG 60.164 44.000 22.57 19.76 42.70 4.94
113 114 4.698304 ACTGGTATCAAATTGTTACCGTGG 59.302 41.667 21.51 17.22 42.70 4.94
114 115 4.653868 TGGTATCAAATTGTTACCGTGGT 58.346 39.130 21.51 0.00 42.70 4.16
115 116 4.456222 TGGTATCAAATTGTTACCGTGGTG 59.544 41.667 21.51 0.00 42.70 4.17
116 117 4.696402 GGTATCAAATTGTTACCGTGGTGA 59.304 41.667 15.10 0.00 34.25 4.02
117 118 5.163794 GGTATCAAATTGTTACCGTGGTGAG 60.164 44.000 15.10 0.00 34.25 3.51
118 119 4.074627 TCAAATTGTTACCGTGGTGAGA 57.925 40.909 0.72 0.00 0.00 3.27
119 120 4.062293 TCAAATTGTTACCGTGGTGAGAG 58.938 43.478 0.72 0.00 0.00 3.20
120 121 3.764237 AATTGTTACCGTGGTGAGAGT 57.236 42.857 0.72 0.00 0.00 3.24
121 122 4.877378 AATTGTTACCGTGGTGAGAGTA 57.123 40.909 0.72 0.00 0.00 2.59
122 123 5.416271 AATTGTTACCGTGGTGAGAGTAT 57.584 39.130 0.72 0.00 0.00 2.12
123 124 6.534475 AATTGTTACCGTGGTGAGAGTATA 57.466 37.500 0.72 0.00 0.00 1.47
124 125 6.726490 ATTGTTACCGTGGTGAGAGTATAT 57.274 37.500 0.72 0.00 0.00 0.86
125 126 5.762825 TGTTACCGTGGTGAGAGTATATC 57.237 43.478 0.72 0.00 0.00 1.63
126 127 5.195185 TGTTACCGTGGTGAGAGTATATCA 58.805 41.667 0.72 0.00 0.00 2.15
127 128 5.066893 TGTTACCGTGGTGAGAGTATATCAC 59.933 44.000 0.72 0.00 45.12 3.06
149 150 9.880157 ATCACCATTTCAAATTTATTCCTTCTG 57.120 29.630 0.00 0.00 0.00 3.02
150 151 8.869109 TCACCATTTCAAATTTATTCCTTCTGT 58.131 29.630 0.00 0.00 0.00 3.41
151 152 8.928733 CACCATTTCAAATTTATTCCTTCTGTG 58.071 33.333 0.00 0.00 0.00 3.66
152 153 8.869109 ACCATTTCAAATTTATTCCTTCTGTGA 58.131 29.630 0.00 0.00 0.00 3.58
153 154 9.709495 CCATTTCAAATTTATTCCTTCTGTGAA 57.291 29.630 0.00 0.00 0.00 3.18
157 158 9.965824 TTCAAATTTATTCCTTCTGTGAACTTC 57.034 29.630 0.00 0.00 0.00 3.01
158 159 8.576442 TCAAATTTATTCCTTCTGTGAACTTCC 58.424 33.333 0.00 0.00 0.00 3.46
159 160 6.743575 ATTTATTCCTTCTGTGAACTTCCG 57.256 37.500 0.00 0.00 0.00 4.30
160 161 5.477607 TTATTCCTTCTGTGAACTTCCGA 57.522 39.130 0.00 0.00 0.00 4.55
161 162 2.814280 TCCTTCTGTGAACTTCCGAC 57.186 50.000 0.00 0.00 0.00 4.79
162 163 2.036387 TCCTTCTGTGAACTTCCGACA 58.964 47.619 0.00 0.00 0.00 4.35
163 164 2.035961 TCCTTCTGTGAACTTCCGACAG 59.964 50.000 0.00 0.00 38.79 3.51
164 165 2.224066 CCTTCTGTGAACTTCCGACAGT 60.224 50.000 8.41 0.00 38.60 3.55
165 166 2.509052 TCTGTGAACTTCCGACAGTG 57.491 50.000 8.41 0.00 38.60 3.66
166 167 1.068588 TCTGTGAACTTCCGACAGTGG 59.931 52.381 8.41 0.00 38.60 4.00
167 168 0.828022 TGTGAACTTCCGACAGTGGT 59.172 50.000 0.00 0.00 0.00 4.16
168 169 1.208535 TGTGAACTTCCGACAGTGGTT 59.791 47.619 0.00 0.00 0.00 3.67
169 170 1.865340 GTGAACTTCCGACAGTGGTTC 59.135 52.381 0.00 0.00 37.41 3.62
170 171 1.760613 TGAACTTCCGACAGTGGTTCT 59.239 47.619 8.51 0.00 37.66 3.01
171 172 2.169769 TGAACTTCCGACAGTGGTTCTT 59.830 45.455 8.51 0.00 37.66 2.52
172 173 3.385433 TGAACTTCCGACAGTGGTTCTTA 59.615 43.478 8.51 0.00 37.66 2.10
173 174 3.662247 ACTTCCGACAGTGGTTCTTAG 57.338 47.619 0.00 0.00 0.00 2.18
174 175 2.288886 ACTTCCGACAGTGGTTCTTAGC 60.289 50.000 0.00 0.00 0.00 3.09
175 176 1.334160 TCCGACAGTGGTTCTTAGCA 58.666 50.000 0.00 0.00 0.00 3.49
176 177 1.272490 TCCGACAGTGGTTCTTAGCAG 59.728 52.381 0.00 0.00 31.28 4.24
177 178 1.272490 CCGACAGTGGTTCTTAGCAGA 59.728 52.381 0.00 0.00 31.28 4.26
178 179 2.600731 CGACAGTGGTTCTTAGCAGAG 58.399 52.381 0.00 0.00 31.28 3.35
179 180 2.672478 CGACAGTGGTTCTTAGCAGAGG 60.672 54.545 0.00 0.00 31.28 3.69
180 181 2.563179 GACAGTGGTTCTTAGCAGAGGA 59.437 50.000 0.00 0.00 31.28 3.71
181 182 2.972713 ACAGTGGTTCTTAGCAGAGGAA 59.027 45.455 0.00 0.00 31.28 3.36
182 183 3.244249 ACAGTGGTTCTTAGCAGAGGAAC 60.244 47.826 5.40 5.40 38.71 3.62
187 188 4.009370 GTTCTTAGCAGAGGAACCAAGT 57.991 45.455 3.15 0.00 34.90 3.16
188 189 5.148651 GTTCTTAGCAGAGGAACCAAGTA 57.851 43.478 3.15 0.00 34.90 2.24
189 190 5.172205 GTTCTTAGCAGAGGAACCAAGTAG 58.828 45.833 3.15 0.00 34.90 2.57
190 191 3.769844 TCTTAGCAGAGGAACCAAGTAGG 59.230 47.826 0.00 0.00 45.67 3.18
191 192 2.327325 AGCAGAGGAACCAAGTAGGA 57.673 50.000 0.00 0.00 41.22 2.94
192 193 2.183679 AGCAGAGGAACCAAGTAGGAG 58.816 52.381 0.00 0.00 41.22 3.69
193 194 1.903183 GCAGAGGAACCAAGTAGGAGT 59.097 52.381 0.00 0.00 41.22 3.85
194 195 2.303311 GCAGAGGAACCAAGTAGGAGTT 59.697 50.000 0.00 0.00 41.22 3.01
195 196 3.866449 GCAGAGGAACCAAGTAGGAGTTG 60.866 52.174 0.00 0.00 41.22 3.16
196 197 2.303311 AGAGGAACCAAGTAGGAGTTGC 59.697 50.000 0.00 0.00 41.22 4.17
197 198 2.038557 GAGGAACCAAGTAGGAGTTGCA 59.961 50.000 0.00 0.00 41.22 4.08
198 199 2.152016 GGAACCAAGTAGGAGTTGCAC 58.848 52.381 0.00 0.00 41.22 4.57
199 200 2.224548 GGAACCAAGTAGGAGTTGCACT 60.225 50.000 0.00 0.00 41.22 4.40
200 201 2.550830 ACCAAGTAGGAGTTGCACTG 57.449 50.000 0.00 0.00 41.22 3.66
201 202 1.072331 ACCAAGTAGGAGTTGCACTGG 59.928 52.381 0.00 0.00 41.22 4.00
202 203 1.347707 CCAAGTAGGAGTTGCACTGGA 59.652 52.381 0.00 0.00 41.22 3.86
203 204 2.224523 CCAAGTAGGAGTTGCACTGGAA 60.225 50.000 0.00 0.00 41.22 3.53
204 205 3.560025 CCAAGTAGGAGTTGCACTGGAAT 60.560 47.826 0.00 0.00 41.22 3.01
205 206 4.074970 CAAGTAGGAGTTGCACTGGAATT 58.925 43.478 0.00 0.00 0.00 2.17
206 207 5.245531 CAAGTAGGAGTTGCACTGGAATTA 58.754 41.667 0.00 0.00 0.00 1.40
207 208 5.700402 AGTAGGAGTTGCACTGGAATTAT 57.300 39.130 0.00 0.00 0.00 1.28
208 209 6.808321 AGTAGGAGTTGCACTGGAATTATA 57.192 37.500 0.00 0.00 0.00 0.98
209 210 6.583562 AGTAGGAGTTGCACTGGAATTATAC 58.416 40.000 0.00 0.00 0.00 1.47
210 211 4.781934 AGGAGTTGCACTGGAATTATACC 58.218 43.478 0.00 0.00 0.00 2.73
211 212 4.227300 AGGAGTTGCACTGGAATTATACCA 59.773 41.667 0.00 0.00 35.96 3.25
212 213 4.947388 GGAGTTGCACTGGAATTATACCAA 59.053 41.667 0.00 0.00 36.95 3.67
213 214 5.417580 GGAGTTGCACTGGAATTATACCAAA 59.582 40.000 0.00 0.00 36.95 3.28
214 215 6.071616 GGAGTTGCACTGGAATTATACCAAAA 60.072 38.462 0.00 0.00 36.95 2.44
215 216 7.363793 GGAGTTGCACTGGAATTATACCAAAAT 60.364 37.037 0.00 0.00 36.95 1.82
216 217 7.906327 AGTTGCACTGGAATTATACCAAAATT 58.094 30.769 0.00 0.00 36.95 1.82
217 218 8.374743 AGTTGCACTGGAATTATACCAAAATTT 58.625 29.630 0.00 0.00 36.95 1.82
218 219 8.655970 GTTGCACTGGAATTATACCAAAATTTC 58.344 33.333 0.00 0.00 36.95 2.17
219 220 7.327214 TGCACTGGAATTATACCAAAATTTCC 58.673 34.615 0.00 0.00 36.95 3.13
220 221 6.761242 GCACTGGAATTATACCAAAATTTCCC 59.239 38.462 0.00 0.00 36.95 3.97
221 222 7.364673 GCACTGGAATTATACCAAAATTTCCCT 60.365 37.037 0.00 0.00 36.95 4.20
222 223 7.981225 CACTGGAATTATACCAAAATTTCCCTG 59.019 37.037 0.00 0.00 36.95 4.45
223 224 7.678171 ACTGGAATTATACCAAAATTTCCCTGT 59.322 33.333 0.00 0.00 36.95 4.00
224 225 9.196139 CTGGAATTATACCAAAATTTCCCTGTA 57.804 33.333 0.00 0.00 36.95 2.74
225 226 9.722317 TGGAATTATACCAAAATTTCCCTGTAT 57.278 29.630 0.00 0.00 34.25 2.29
251 252 6.966435 AAAAACAAACAACATGAAGTGAGG 57.034 33.333 0.00 0.00 0.00 3.86
252 253 5.913137 AAACAAACAACATGAAGTGAGGA 57.087 34.783 0.00 0.00 0.00 3.71
253 254 5.913137 AACAAACAACATGAAGTGAGGAA 57.087 34.783 0.00 0.00 0.00 3.36
254 255 6.469782 AACAAACAACATGAAGTGAGGAAT 57.530 33.333 0.00 0.00 0.00 3.01
255 256 7.581213 AACAAACAACATGAAGTGAGGAATA 57.419 32.000 0.00 0.00 0.00 1.75
256 257 7.765695 ACAAACAACATGAAGTGAGGAATAT 57.234 32.000 0.00 0.00 0.00 1.28
257 258 8.862325 ACAAACAACATGAAGTGAGGAATATA 57.138 30.769 0.00 0.00 0.00 0.86
258 259 9.466497 ACAAACAACATGAAGTGAGGAATATAT 57.534 29.630 0.00 0.00 0.00 0.86
266 267 9.499479 CATGAAGTGAGGAATATATACTTGCTT 57.501 33.333 3.14 5.36 32.23 3.91
300 302 3.195396 TCTGGCTTGCTTTGACTTTTGTT 59.805 39.130 0.00 0.00 0.00 2.83
337 340 5.475719 AGAAATGAGCATGTCACAAAATGG 58.524 37.500 3.66 0.00 38.28 3.16
378 387 3.385314 TGATGAATTTGATGCCCCTCA 57.615 42.857 0.00 0.00 0.00 3.86
388 397 2.173356 TGATGCCCCTCATTTACTCCAG 59.827 50.000 0.00 0.00 35.05 3.86
409 418 1.705002 TAGCAAGTGTGGCCACCAGT 61.705 55.000 32.62 19.68 42.88 4.00
426 435 4.152284 CCAGTAGGTAACATTCCCTTCC 57.848 50.000 0.00 0.00 41.41 3.46
427 436 3.118000 CCAGTAGGTAACATTCCCTTCCC 60.118 52.174 0.00 0.00 41.41 3.97
428 437 3.780850 CAGTAGGTAACATTCCCTTCCCT 59.219 47.826 0.00 0.00 41.41 4.20
429 438 4.038633 AGTAGGTAACATTCCCTTCCCTC 58.961 47.826 0.00 0.00 41.41 4.30
511 520 5.417266 TGTTCTGAAACAATCTGGTGAACAA 59.583 36.000 0.00 0.00 42.34 2.83
530 540 7.593644 GTGAACAAATACAGAAACCATTGTACC 59.406 37.037 0.00 0.00 33.03 3.34
592 636 6.257411 CCATGACAATCTCTTGACACTGATAC 59.743 42.308 0.00 0.00 39.28 2.24
594 638 6.625362 TGACAATCTCTTGACACTGATACTC 58.375 40.000 0.00 0.00 33.19 2.59
695 744 1.797025 GTGAGGTTCACAGCCACTAC 58.203 55.000 4.42 0.00 46.22 2.73
709 758 3.770388 AGCCACTACTAAGGTTTCCTCTC 59.230 47.826 0.00 0.00 30.89 3.20
846 900 9.770097 TGATTTAATTTAAACACTCAATGGCAA 57.230 25.926 3.78 0.00 0.00 4.52
849 903 8.545229 TTAATTTAAACACTCAATGGCAATGG 57.455 30.769 2.15 0.00 0.00 3.16
850 904 2.460757 AAACACTCAATGGCAATGGC 57.539 45.000 2.15 0.00 40.13 4.40
851 905 1.340088 AACACTCAATGGCAATGGCA 58.660 45.000 12.96 12.96 43.71 4.92
953 1014 2.925578 TACATTGCATGCTCTGTTGC 57.074 45.000 24.13 0.00 39.33 4.17
980 1041 1.955778 CATCCTGCAACCAACACTTCA 59.044 47.619 0.00 0.00 0.00 3.02
988 1057 5.218885 TGCAACCAACACTTCAATTATTCG 58.781 37.500 0.00 0.00 0.00 3.34
1078 1162 1.941209 GCAACAGCGACTTCTCCATCA 60.941 52.381 0.00 0.00 0.00 3.07
1083 1167 0.598680 GCGACTTCTCCATCATCGGG 60.599 60.000 0.00 0.00 33.45 5.14
1089 1173 1.996798 TCTCCATCATCGGGTACTCC 58.003 55.000 0.00 0.00 0.00 3.85
1401 1485 0.329596 ATGACTTGCCCAAGGAGGTC 59.670 55.000 12.22 2.81 42.53 3.85
1482 1566 4.373116 GCCTTCTCGACGGTGGCA 62.373 66.667 13.42 0.00 42.79 4.92
1602 1686 1.227234 CGGCATGATGGACTACGCA 60.227 57.895 0.00 0.00 0.00 5.24
1791 1878 2.671070 CACCAGCCCATCTCCGTT 59.329 61.111 0.00 0.00 0.00 4.44
1841 1928 0.978151 TTCTACAGCGGGGTAAGCAA 59.022 50.000 0.00 0.00 37.01 3.91
1842 1929 0.248289 TCTACAGCGGGGTAAGCAAC 59.752 55.000 0.00 0.00 37.01 4.17
1846 1933 1.338769 ACAGCGGGGTAAGCAACTAAG 60.339 52.381 0.00 0.00 37.01 2.18
1848 1935 0.675522 GCGGGGTAAGCAACTAAGCA 60.676 55.000 0.00 0.00 36.85 3.91
1932 2107 2.154854 ACTCACGTTGGATGACAGTG 57.845 50.000 0.00 0.00 0.00 3.66
1933 2108 1.686587 ACTCACGTTGGATGACAGTGA 59.313 47.619 0.00 0.00 39.21 3.41
1934 2109 2.061773 CTCACGTTGGATGACAGTGAC 58.938 52.381 0.00 0.00 36.98 3.67
1935 2110 1.410882 TCACGTTGGATGACAGTGACA 59.589 47.619 0.00 0.00 36.98 3.58
2273 2454 1.009829 GGACAACTGATGATGACCGC 58.990 55.000 0.00 0.00 0.00 5.68
2362 2566 3.191162 TGTTCCTCATCTTTGCATTTCCG 59.809 43.478 0.00 0.00 0.00 4.30
2366 2570 2.919229 CTCATCTTTGCATTTCCGTTGC 59.081 45.455 0.00 0.00 40.55 4.17
2367 2571 1.994779 CATCTTTGCATTTCCGTTGCC 59.005 47.619 0.00 0.00 39.39 4.52
2372 2576 2.147436 TGCATTTCCGTTGCCTTTTC 57.853 45.000 0.00 0.00 39.39 2.29
2376 2580 3.559655 GCATTTCCGTTGCCTTTTCTTTT 59.440 39.130 0.00 0.00 33.95 2.27
2377 2581 4.747605 GCATTTCCGTTGCCTTTTCTTTTA 59.252 37.500 0.00 0.00 33.95 1.52
2388 2592 8.884726 GTTGCCTTTTCTTTTATGTGGTTTTTA 58.115 29.630 0.00 0.00 0.00 1.52
2408 2612 5.980698 TTATTTTGGTTAACACGACGACA 57.019 34.783 8.10 0.00 0.00 4.35
2468 2674 2.969990 TGAGATTGCTGAGCTTGTCTC 58.030 47.619 19.74 19.74 42.23 3.36
2479 2685 2.981140 GAGCTTGTCTCGTTACTGTGTC 59.019 50.000 0.00 0.00 31.20 3.67
2486 2692 2.840673 CTCGTTACTGTGTCGAGTGAG 58.159 52.381 20.11 4.03 43.69 3.51
2487 2693 1.534163 TCGTTACTGTGTCGAGTGAGG 59.466 52.381 5.37 0.00 0.00 3.86
2502 2708 3.798202 AGTGAGGTGTCTGAAAGTTCAC 58.202 45.455 4.31 4.31 38.41 3.18
2537 2743 2.426738 TGCAGGTAAGGTTAATGCATGC 59.573 45.455 11.82 11.82 41.65 4.06
2626 2833 0.823460 CCCAGTGCCAACAAACAACT 59.177 50.000 0.00 0.00 0.00 3.16
2636 2903 3.181495 CCAACAAACAACTAGAAACGCCA 60.181 43.478 0.00 0.00 0.00 5.69
2639 2906 3.630312 ACAAACAACTAGAAACGCCACAT 59.370 39.130 0.00 0.00 0.00 3.21
2653 2920 3.127548 ACGCCACATCTAGAAAAATGCAG 59.872 43.478 0.00 0.00 0.00 4.41
2657 2924 4.418392 CACATCTAGAAAAATGCAGTGCC 58.582 43.478 13.72 0.00 0.00 5.01
2661 2928 5.314923 TCTAGAAAAATGCAGTGCCAATC 57.685 39.130 13.72 4.12 0.00 2.67
2668 2935 0.754587 TGCAGTGCCAATCAACACCA 60.755 50.000 13.72 0.00 37.51 4.17
2674 2941 1.887854 TGCCAATCAACACCACATCTG 59.112 47.619 0.00 0.00 0.00 2.90
2675 2942 1.888512 GCCAATCAACACCACATCTGT 59.111 47.619 0.00 0.00 0.00 3.41
2676 2943 2.095059 GCCAATCAACACCACATCTGTC 60.095 50.000 0.00 0.00 0.00 3.51
2677 2944 3.148412 CCAATCAACACCACATCTGTCA 58.852 45.455 0.00 0.00 0.00 3.58
2678 2945 3.760151 CCAATCAACACCACATCTGTCAT 59.240 43.478 0.00 0.00 0.00 3.06
2679 2946 4.142534 CCAATCAACACCACATCTGTCATC 60.143 45.833 0.00 0.00 0.00 2.92
2680 2947 4.564782 ATCAACACCACATCTGTCATCT 57.435 40.909 0.00 0.00 0.00 2.90
2681 2948 5.682234 ATCAACACCACATCTGTCATCTA 57.318 39.130 0.00 0.00 0.00 1.98
2685 2952 1.765314 ACCACATCTGTCATCTAGCCC 59.235 52.381 0.00 0.00 0.00 5.19
2687 2954 2.171237 CCACATCTGTCATCTAGCCCAA 59.829 50.000 0.00 0.00 0.00 4.12
2688 2955 3.464907 CACATCTGTCATCTAGCCCAAG 58.535 50.000 0.00 0.00 0.00 3.61
2696 2963 6.327365 TCTGTCATCTAGCCCAAGATTTATCA 59.673 38.462 0.00 0.00 33.87 2.15
2700 2967 6.273026 TCATCTAGCCCAAGATTTATCATCCA 59.727 38.462 0.00 0.00 33.87 3.41
2702 2969 6.537355 TCTAGCCCAAGATTTATCATCCAAG 58.463 40.000 0.00 0.00 0.00 3.61
2714 2981 6.620877 TTATCATCCAAGGACAACAGTACT 57.379 37.500 0.00 0.00 0.00 2.73
2715 2982 4.974645 TCATCCAAGGACAACAGTACTT 57.025 40.909 0.00 0.00 36.88 2.24
2719 2986 3.885484 CAAGGACAACAGTACTTGCAG 57.115 47.619 7.57 0.00 44.68 4.41
2756 3042 1.226542 CAGCCTGCACCAGATCCAT 59.773 57.895 0.00 0.00 32.44 3.41
2764 3050 3.609853 TGCACCAGATCCATTACACTTC 58.390 45.455 0.00 0.00 0.00 3.01
2779 3065 7.546667 CCATTACACTTCAATCCAATCCTTTTG 59.453 37.037 0.00 0.00 0.00 2.44
2780 3066 5.473066 ACACTTCAATCCAATCCTTTTGG 57.527 39.130 0.00 0.00 40.87 3.28
2781 3067 4.901250 ACACTTCAATCCAATCCTTTTGGT 59.099 37.500 4.42 0.00 40.40 3.67
2784 3073 7.235399 ACACTTCAATCCAATCCTTTTGGTTAT 59.765 33.333 4.42 0.00 40.40 1.89
2787 3076 9.807649 CTTCAATCCAATCCTTTTGGTTATTAG 57.192 33.333 4.42 0.00 40.40 1.73
2821 3110 7.659652 AAAAATCTCTTACTTCGGACTTCAG 57.340 36.000 0.00 0.00 0.00 3.02
2822 3111 6.591750 AAATCTCTTACTTCGGACTTCAGA 57.408 37.500 0.00 0.00 0.00 3.27
2823 3112 6.591750 AATCTCTTACTTCGGACTTCAGAA 57.408 37.500 0.00 0.00 0.00 3.02
2824 3113 6.591750 ATCTCTTACTTCGGACTTCAGAAA 57.408 37.500 0.00 0.00 30.17 2.52
2825 3114 6.591750 TCTCTTACTTCGGACTTCAGAAAT 57.408 37.500 0.00 0.00 30.17 2.17
2826 3115 7.698506 TCTCTTACTTCGGACTTCAGAAATA 57.301 36.000 0.00 0.00 30.17 1.40
2827 3116 7.763356 TCTCTTACTTCGGACTTCAGAAATAG 58.237 38.462 0.00 0.00 30.17 1.73
2828 3117 7.393796 TCTCTTACTTCGGACTTCAGAAATAGT 59.606 37.037 0.00 0.00 30.17 2.12
2829 3118 7.893658 TCTTACTTCGGACTTCAGAAATAGTT 58.106 34.615 0.00 0.00 30.17 2.24
2830 3119 8.365647 TCTTACTTCGGACTTCAGAAATAGTTT 58.634 33.333 0.00 0.00 30.17 2.66
2831 3120 8.897872 TTACTTCGGACTTCAGAAATAGTTTT 57.102 30.769 0.00 0.00 30.17 2.43
2832 3121 7.190920 ACTTCGGACTTCAGAAATAGTTTTG 57.809 36.000 0.00 0.00 30.17 2.44
2833 3122 6.766467 ACTTCGGACTTCAGAAATAGTTTTGT 59.234 34.615 0.00 0.00 30.17 2.83
2834 3123 7.282450 ACTTCGGACTTCAGAAATAGTTTTGTT 59.718 33.333 0.00 0.00 30.17 2.83
2835 3124 7.562454 TCGGACTTCAGAAATAGTTTTGTTT 57.438 32.000 0.00 0.00 0.00 2.83
2836 3125 7.414436 TCGGACTTCAGAAATAGTTTTGTTTG 58.586 34.615 0.00 0.00 0.00 2.93
2837 3126 7.066525 TCGGACTTCAGAAATAGTTTTGTTTGT 59.933 33.333 0.00 0.00 0.00 2.83
2838 3127 7.700656 CGGACTTCAGAAATAGTTTTGTTTGTT 59.299 33.333 0.00 0.00 0.00 2.83
2844 3133 9.179909 TCAGAAATAGTTTTGTTTGTTAGACCA 57.820 29.630 0.00 0.00 0.00 4.02
2845 3134 9.796120 CAGAAATAGTTTTGTTTGTTAGACCAA 57.204 29.630 0.00 0.00 0.00 3.67
2846 3135 9.797556 AGAAATAGTTTTGTTTGTTAGACCAAC 57.202 29.630 0.00 0.00 37.67 3.77
2847 3136 8.936070 AAATAGTTTTGTTTGTTAGACCAACC 57.064 30.769 0.00 0.00 36.20 3.77
2848 3137 5.986501 AGTTTTGTTTGTTAGACCAACCA 57.013 34.783 0.00 0.00 36.20 3.67
2849 3138 6.347859 AGTTTTGTTTGTTAGACCAACCAA 57.652 33.333 0.00 0.00 36.20 3.67
2850 3139 6.760291 AGTTTTGTTTGTTAGACCAACCAAA 58.240 32.000 0.00 0.00 36.20 3.28
2851 3140 7.217906 AGTTTTGTTTGTTAGACCAACCAAAA 58.782 30.769 5.58 5.58 35.37 2.44
2852 3141 7.715686 AGTTTTGTTTGTTAGACCAACCAAAAA 59.284 29.630 9.79 0.96 37.45 1.94
2885 3174 8.848474 TTTCTTCGGAGTTCAGAAATAGATTT 57.152 30.769 0.00 0.00 32.72 2.17
2886 3175 7.834068 TCTTCGGAGTTCAGAAATAGATTTG 57.166 36.000 0.00 0.00 30.17 2.32
2887 3176 7.386851 TCTTCGGAGTTCAGAAATAGATTTGT 58.613 34.615 0.00 0.00 30.17 2.83
2888 3177 7.878127 TCTTCGGAGTTCAGAAATAGATTTGTT 59.122 33.333 0.00 0.00 30.17 2.83
2889 3178 7.979444 TCGGAGTTCAGAAATAGATTTGTTT 57.021 32.000 0.00 0.00 0.00 2.83
2890 3179 9.496873 TTCGGAGTTCAGAAATAGATTTGTTTA 57.503 29.630 0.00 0.00 0.00 2.01
2891 3180 9.667107 TCGGAGTTCAGAAATAGATTTGTTTAT 57.333 29.630 0.00 0.00 0.00 1.40
2962 3251 1.821136 GGAATCCAAGTTGAGGCCTTG 59.179 52.381 6.77 0.00 39.19 3.61
2965 3254 2.276732 TCCAAGTTGAGGCCTTGAAG 57.723 50.000 6.77 0.00 41.44 3.02
2980 3269 7.462590 AGGCCTTGAAGTCTACTCTTTAAATT 58.537 34.615 0.00 0.00 0.00 1.82
3031 3337 4.776435 TCTACATCTGCCAATCCAATGA 57.224 40.909 0.00 0.00 0.00 2.57
3035 3341 2.133281 TCTGCCAATCCAATGACCAG 57.867 50.000 0.00 0.00 0.00 4.00
3039 3345 3.763360 CTGCCAATCCAATGACCAGTTTA 59.237 43.478 0.00 0.00 0.00 2.01
3055 3362 4.638421 CCAGTTTAAATAAGGCATCACGGA 59.362 41.667 0.00 0.00 0.00 4.69
3079 3386 4.952335 AGCCTCAAAGAACCATATTGAAGG 59.048 41.667 0.00 0.00 33.08 3.46
3080 3387 4.949856 GCCTCAAAGAACCATATTGAAGGA 59.050 41.667 0.00 0.00 33.08 3.36
3081 3388 5.163612 GCCTCAAAGAACCATATTGAAGGAC 60.164 44.000 0.00 0.00 33.08 3.85
3122 5454 6.600822 CCAGTTTCTCATGGTTATTGTCATCT 59.399 38.462 0.00 0.00 0.00 2.90
3131 5463 9.912634 TCATGGTTATTGTCATCTTTCTTTTTC 57.087 29.630 0.00 0.00 0.00 2.29
3143 5475 9.918630 TCATCTTTCTTTTTCAATGAATCCTTC 57.081 29.630 0.00 0.00 0.00 3.46
3151 5483 7.687941 TTTTCAATGAATCCTTCTAGTCACC 57.312 36.000 0.00 0.00 0.00 4.02
3158 5490 5.186021 TGAATCCTTCTAGTCACCTCACTTC 59.814 44.000 0.00 0.00 0.00 3.01
3162 5494 5.602978 TCCTTCTAGTCACCTCACTTCTTTT 59.397 40.000 0.00 0.00 0.00 2.27
3163 5495 6.781014 TCCTTCTAGTCACCTCACTTCTTTTA 59.219 38.462 0.00 0.00 0.00 1.52
3164 5496 6.869388 CCTTCTAGTCACCTCACTTCTTTTAC 59.131 42.308 0.00 0.00 0.00 2.01
3165 5497 6.342338 TCTAGTCACCTCACTTCTTTTACC 57.658 41.667 0.00 0.00 0.00 2.85
3166 5498 3.991367 AGTCACCTCACTTCTTTTACCG 58.009 45.455 0.00 0.00 0.00 4.02
3167 5499 3.640029 AGTCACCTCACTTCTTTTACCGA 59.360 43.478 0.00 0.00 0.00 4.69
3168 5500 4.100498 AGTCACCTCACTTCTTTTACCGAA 59.900 41.667 0.00 0.00 0.00 4.30
3169 5501 4.812626 GTCACCTCACTTCTTTTACCGAAA 59.187 41.667 0.00 0.00 0.00 3.46
3170 5502 5.295045 GTCACCTCACTTCTTTTACCGAAAA 59.705 40.000 0.00 0.00 33.48 2.29
3179 5511 4.577834 CTTTTACCGAAAAGGGCTTTCA 57.422 40.909 2.82 0.00 45.30 2.69
3180 5512 3.994204 TTTACCGAAAAGGGCTTTCAC 57.006 42.857 0.95 0.00 46.96 3.18
3181 5513 1.900245 TACCGAAAAGGGCTTTCACC 58.100 50.000 0.95 0.00 46.96 4.02
3218 5550 7.715265 AAATCAACGACCAGATATACACATC 57.285 36.000 0.00 0.00 0.00 3.06
3219 5551 5.196341 TCAACGACCAGATATACACATCC 57.804 43.478 0.00 0.00 0.00 3.51
3220 5552 3.917329 ACGACCAGATATACACATCCG 57.083 47.619 0.00 0.00 0.00 4.18
3221 5553 2.557056 ACGACCAGATATACACATCCGG 59.443 50.000 0.00 0.00 0.00 5.14
3222 5554 2.817844 CGACCAGATATACACATCCGGA 59.182 50.000 6.61 6.61 0.00 5.14
3223 5555 3.444034 CGACCAGATATACACATCCGGAT 59.556 47.826 12.38 12.38 0.00 4.18
3224 5556 4.638865 CGACCAGATATACACATCCGGATA 59.361 45.833 18.63 0.88 0.00 2.59
3225 5557 5.448768 CGACCAGATATACACATCCGGATAC 60.449 48.000 18.63 1.77 0.00 2.24
3226 5558 5.330233 ACCAGATATACACATCCGGATACA 58.670 41.667 18.63 2.62 0.00 2.29
3227 5559 5.778241 ACCAGATATACACATCCGGATACAA 59.222 40.000 18.63 3.40 0.00 2.41
3228 5560 6.100004 CCAGATATACACATCCGGATACAAC 58.900 44.000 18.63 3.83 0.00 3.32
3229 5561 6.295067 CCAGATATACACATCCGGATACAACA 60.295 42.308 18.63 1.84 0.00 3.33
3230 5562 6.586463 CAGATATACACATCCGGATACAACAC 59.414 42.308 18.63 5.22 0.00 3.32
3231 5563 2.004583 ACACATCCGGATACAACACG 57.995 50.000 18.63 5.30 0.00 4.49
3232 5564 0.650512 CACATCCGGATACAACACGC 59.349 55.000 18.63 0.00 0.00 5.34
3233 5565 0.461339 ACATCCGGATACAACACGCC 60.461 55.000 18.63 0.00 0.00 5.68
3234 5566 0.461163 CATCCGGATACAACACGCCA 60.461 55.000 18.63 0.00 0.00 5.69
3235 5567 0.468226 ATCCGGATACAACACGCCAT 59.532 50.000 17.43 0.00 0.00 4.40
3236 5568 0.179094 TCCGGATACAACACGCCATC 60.179 55.000 0.00 0.00 0.00 3.51
3237 5569 0.461163 CCGGATACAACACGCCATCA 60.461 55.000 0.00 0.00 0.00 3.07
3238 5570 1.364721 CGGATACAACACGCCATCAA 58.635 50.000 0.00 0.00 0.00 2.57
3239 5571 1.062002 CGGATACAACACGCCATCAAC 59.938 52.381 0.00 0.00 0.00 3.18
3240 5572 2.080693 GGATACAACACGCCATCAACA 58.919 47.619 0.00 0.00 0.00 3.33
3241 5573 2.159572 GGATACAACACGCCATCAACAC 60.160 50.000 0.00 0.00 0.00 3.32
3242 5574 1.954927 TACAACACGCCATCAACACA 58.045 45.000 0.00 0.00 0.00 3.72
3243 5575 0.380378 ACAACACGCCATCAACACAC 59.620 50.000 0.00 0.00 0.00 3.82
3244 5576 0.380024 CAACACGCCATCAACACACA 59.620 50.000 0.00 0.00 0.00 3.72
3245 5577 0.380378 AACACGCCATCAACACACAC 59.620 50.000 0.00 0.00 0.00 3.82
3246 5578 0.746204 ACACGCCATCAACACACACA 60.746 50.000 0.00 0.00 0.00 3.72
3247 5579 0.316937 CACGCCATCAACACACACAC 60.317 55.000 0.00 0.00 0.00 3.82
3248 5580 1.282570 CGCCATCAACACACACACC 59.717 57.895 0.00 0.00 0.00 4.16
3249 5581 1.443322 CGCCATCAACACACACACCA 61.443 55.000 0.00 0.00 0.00 4.17
3250 5582 0.030638 GCCATCAACACACACACCAC 59.969 55.000 0.00 0.00 0.00 4.16
3251 5583 1.387539 CCATCAACACACACACCACA 58.612 50.000 0.00 0.00 0.00 4.17
3252 5584 1.065401 CCATCAACACACACACCACAC 59.935 52.381 0.00 0.00 0.00 3.82
3253 5585 2.016318 CATCAACACACACACCACACT 58.984 47.619 0.00 0.00 0.00 3.55
3254 5586 1.732941 TCAACACACACACCACACTC 58.267 50.000 0.00 0.00 0.00 3.51
3255 5587 1.002544 TCAACACACACACCACACTCA 59.997 47.619 0.00 0.00 0.00 3.41
3256 5588 1.130373 CAACACACACACCACACTCAC 59.870 52.381 0.00 0.00 0.00 3.51
3257 5589 0.392461 ACACACACACCACACTCACC 60.392 55.000 0.00 0.00 0.00 4.02
3258 5590 1.095228 CACACACACCACACTCACCC 61.095 60.000 0.00 0.00 0.00 4.61
3259 5591 1.223211 CACACACCACACTCACCCA 59.777 57.895 0.00 0.00 0.00 4.51
3260 5592 0.393673 CACACACCACACTCACCCAA 60.394 55.000 0.00 0.00 0.00 4.12
3261 5593 0.107214 ACACACCACACTCACCCAAG 60.107 55.000 0.00 0.00 0.00 3.61
3262 5594 0.819259 CACACCACACTCACCCAAGG 60.819 60.000 0.00 0.00 0.00 3.61
3263 5595 1.279025 ACACCACACTCACCCAAGGT 61.279 55.000 0.00 0.00 35.62 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.991783 AGGACATGAAGATTCAATACATTGAT 57.008 30.769 0.00 0.00 45.30 2.57
19 20 8.270030 AGAGGACATGAAGATTCAATACATTGA 58.730 33.333 0.00 0.45 44.42 2.57
20 21 8.343366 CAGAGGACATGAAGATTCAATACATTG 58.657 37.037 0.00 0.00 41.13 2.82
21 22 7.501559 CCAGAGGACATGAAGATTCAATACATT 59.498 37.037 0.00 0.00 41.13 2.71
22 23 6.996879 CCAGAGGACATGAAGATTCAATACAT 59.003 38.462 0.00 0.00 41.13 2.29
23 24 6.070021 ACCAGAGGACATGAAGATTCAATACA 60.070 38.462 0.00 0.00 41.13 2.29
24 25 6.352516 ACCAGAGGACATGAAGATTCAATAC 58.647 40.000 0.00 0.00 41.13 1.89
25 26 6.566079 ACCAGAGGACATGAAGATTCAATA 57.434 37.500 0.00 0.00 41.13 1.90
26 27 5.447778 ACCAGAGGACATGAAGATTCAAT 57.552 39.130 0.00 0.00 41.13 2.57
27 28 4.916041 ACCAGAGGACATGAAGATTCAA 57.084 40.909 0.00 0.00 41.13 2.69
28 29 4.286808 TCAACCAGAGGACATGAAGATTCA 59.713 41.667 0.00 0.00 42.14 2.57
29 30 4.633565 GTCAACCAGAGGACATGAAGATTC 59.366 45.833 0.00 0.00 34.22 2.52
30 31 4.566488 GGTCAACCAGAGGACATGAAGATT 60.566 45.833 0.00 0.00 35.74 2.40
31 32 3.054802 GGTCAACCAGAGGACATGAAGAT 60.055 47.826 0.00 0.00 35.74 2.40
32 33 2.303022 GGTCAACCAGAGGACATGAAGA 59.697 50.000 0.00 0.00 35.74 2.87
33 34 2.616510 GGGTCAACCAGAGGACATGAAG 60.617 54.545 0.00 0.00 39.85 3.02
34 35 1.351017 GGGTCAACCAGAGGACATGAA 59.649 52.381 0.00 0.00 39.85 2.57
35 36 0.984230 GGGTCAACCAGAGGACATGA 59.016 55.000 0.00 0.00 39.85 3.07
36 37 0.987294 AGGGTCAACCAGAGGACATG 59.013 55.000 0.89 0.00 43.89 3.21
37 38 1.747444 AAGGGTCAACCAGAGGACAT 58.253 50.000 0.89 0.00 43.89 3.06
38 39 1.518367 AAAGGGTCAACCAGAGGACA 58.482 50.000 0.89 0.00 43.89 4.02
39 40 2.638363 AGTAAAGGGTCAACCAGAGGAC 59.362 50.000 0.89 0.00 43.89 3.85
40 41 2.986050 AGTAAAGGGTCAACCAGAGGA 58.014 47.619 0.89 0.00 43.89 3.71
41 42 3.412386 CAAGTAAAGGGTCAACCAGAGG 58.588 50.000 0.89 0.00 43.89 3.69
42 43 3.412386 CCAAGTAAAGGGTCAACCAGAG 58.588 50.000 0.89 0.00 43.89 3.35
43 44 2.488347 GCCAAGTAAAGGGTCAACCAGA 60.488 50.000 0.89 0.00 43.89 3.86
44 45 1.886542 GCCAAGTAAAGGGTCAACCAG 59.113 52.381 0.89 0.00 43.89 4.00
45 46 1.215673 TGCCAAGTAAAGGGTCAACCA 59.784 47.619 0.89 0.00 43.89 3.67
46 47 1.989706 TGCCAAGTAAAGGGTCAACC 58.010 50.000 0.00 0.00 40.67 3.77
47 48 3.572255 TCATTGCCAAGTAAAGGGTCAAC 59.428 43.478 0.00 0.00 0.00 3.18
48 49 3.838565 TCATTGCCAAGTAAAGGGTCAA 58.161 40.909 0.00 0.00 0.00 3.18
49 50 3.517296 TCATTGCCAAGTAAAGGGTCA 57.483 42.857 0.00 0.00 0.00 4.02
50 51 4.864704 TTTCATTGCCAAGTAAAGGGTC 57.135 40.909 0.00 0.00 0.00 4.46
51 52 5.550290 CAATTTCATTGCCAAGTAAAGGGT 58.450 37.500 0.00 0.00 32.92 4.34
64 65 7.765360 TCCAGCTAAAATAAGGCAATTTCATTG 59.235 33.333 0.00 0.00 43.06 2.82
65 66 7.765819 GTCCAGCTAAAATAAGGCAATTTCATT 59.234 33.333 0.00 0.00 0.00 2.57
66 67 7.124750 AGTCCAGCTAAAATAAGGCAATTTCAT 59.875 33.333 0.00 0.00 0.00 2.57
67 68 6.437162 AGTCCAGCTAAAATAAGGCAATTTCA 59.563 34.615 0.00 0.00 0.00 2.69
68 69 6.753744 CAGTCCAGCTAAAATAAGGCAATTTC 59.246 38.462 0.00 0.00 0.00 2.17
69 70 6.351286 CCAGTCCAGCTAAAATAAGGCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
70 71 5.127682 CCAGTCCAGCTAAAATAAGGCAATT 59.872 40.000 0.00 0.00 0.00 2.32
71 72 4.646492 CCAGTCCAGCTAAAATAAGGCAAT 59.354 41.667 0.00 0.00 0.00 3.56
72 73 4.016444 CCAGTCCAGCTAAAATAAGGCAA 58.984 43.478 0.00 0.00 0.00 4.52
73 74 3.010138 ACCAGTCCAGCTAAAATAAGGCA 59.990 43.478 0.00 0.00 0.00 4.75
74 75 3.621558 ACCAGTCCAGCTAAAATAAGGC 58.378 45.455 0.00 0.00 0.00 4.35
75 76 6.591935 TGATACCAGTCCAGCTAAAATAAGG 58.408 40.000 0.00 0.00 0.00 2.69
76 77 8.506168 TTTGATACCAGTCCAGCTAAAATAAG 57.494 34.615 0.00 0.00 0.00 1.73
77 78 9.474313 AATTTGATACCAGTCCAGCTAAAATAA 57.526 29.630 0.00 0.00 0.00 1.40
78 79 8.902806 CAATTTGATACCAGTCCAGCTAAAATA 58.097 33.333 0.00 0.00 0.00 1.40
79 80 7.397192 ACAATTTGATACCAGTCCAGCTAAAAT 59.603 33.333 2.79 0.00 0.00 1.82
80 81 6.719370 ACAATTTGATACCAGTCCAGCTAAAA 59.281 34.615 2.79 0.00 0.00 1.52
81 82 6.245408 ACAATTTGATACCAGTCCAGCTAAA 58.755 36.000 2.79 0.00 0.00 1.85
82 83 5.815581 ACAATTTGATACCAGTCCAGCTAA 58.184 37.500 2.79 0.00 0.00 3.09
83 84 5.435686 ACAATTTGATACCAGTCCAGCTA 57.564 39.130 2.79 0.00 0.00 3.32
84 85 4.307032 ACAATTTGATACCAGTCCAGCT 57.693 40.909 2.79 0.00 0.00 4.24
85 86 5.163652 GGTAACAATTTGATACCAGTCCAGC 60.164 44.000 23.61 1.90 43.02 4.85
86 87 5.064707 CGGTAACAATTTGATACCAGTCCAG 59.935 44.000 26.20 11.81 43.49 3.86
87 88 4.938832 CGGTAACAATTTGATACCAGTCCA 59.061 41.667 26.20 0.00 43.49 4.02
88 89 4.939439 ACGGTAACAATTTGATACCAGTCC 59.061 41.667 26.20 7.93 43.49 3.85
89 90 5.163794 CCACGGTAACAATTTGATACCAGTC 60.164 44.000 26.20 8.08 43.49 3.51
90 91 4.698304 CCACGGTAACAATTTGATACCAGT 59.302 41.667 26.20 22.01 43.49 4.00
91 92 4.698304 ACCACGGTAACAATTTGATACCAG 59.302 41.667 26.20 21.56 43.49 4.00
92 93 4.456222 CACCACGGTAACAATTTGATACCA 59.544 41.667 26.20 0.00 43.49 3.25
93 94 4.696402 TCACCACGGTAACAATTTGATACC 59.304 41.667 20.36 20.36 40.94 2.73
94 95 5.640357 TCTCACCACGGTAACAATTTGATAC 59.360 40.000 2.79 5.86 0.00 2.24
95 96 5.795972 TCTCACCACGGTAACAATTTGATA 58.204 37.500 2.79 0.00 0.00 2.15
96 97 4.647611 TCTCACCACGGTAACAATTTGAT 58.352 39.130 2.79 0.00 0.00 2.57
97 98 4.062293 CTCTCACCACGGTAACAATTTGA 58.938 43.478 2.79 0.00 0.00 2.69
98 99 3.813166 ACTCTCACCACGGTAACAATTTG 59.187 43.478 0.00 0.00 0.00 2.32
99 100 4.081322 ACTCTCACCACGGTAACAATTT 57.919 40.909 0.00 0.00 0.00 1.82
100 101 3.764237 ACTCTCACCACGGTAACAATT 57.236 42.857 0.00 0.00 0.00 2.32
101 102 6.322969 TGATATACTCTCACCACGGTAACAAT 59.677 38.462 0.00 0.00 0.00 2.71
102 103 5.653330 TGATATACTCTCACCACGGTAACAA 59.347 40.000 0.00 0.00 0.00 2.83
103 104 5.066893 GTGATATACTCTCACCACGGTAACA 59.933 44.000 0.00 0.00 37.61 2.41
104 105 5.517904 GTGATATACTCTCACCACGGTAAC 58.482 45.833 0.00 0.00 37.61 2.50
105 106 5.762825 GTGATATACTCTCACCACGGTAA 57.237 43.478 0.00 0.00 37.61 2.85
123 124 9.880157 CAGAAGGAATAAATTTGAAATGGTGAT 57.120 29.630 0.00 0.00 0.00 3.06
124 125 8.869109 ACAGAAGGAATAAATTTGAAATGGTGA 58.131 29.630 0.00 0.00 0.00 4.02
125 126 8.928733 CACAGAAGGAATAAATTTGAAATGGTG 58.071 33.333 0.00 0.00 0.00 4.17
126 127 8.869109 TCACAGAAGGAATAAATTTGAAATGGT 58.131 29.630 0.00 0.00 0.00 3.55
127 128 9.709495 TTCACAGAAGGAATAAATTTGAAATGG 57.291 29.630 0.00 0.00 0.00 3.16
131 132 9.965824 GAAGTTCACAGAAGGAATAAATTTGAA 57.034 29.630 0.00 0.00 0.00 2.69
132 133 8.576442 GGAAGTTCACAGAAGGAATAAATTTGA 58.424 33.333 5.01 0.00 0.00 2.69
133 134 7.538678 CGGAAGTTCACAGAAGGAATAAATTTG 59.461 37.037 5.01 0.00 0.00 2.32
134 135 7.447238 TCGGAAGTTCACAGAAGGAATAAATTT 59.553 33.333 5.01 0.00 0.00 1.82
135 136 6.940298 TCGGAAGTTCACAGAAGGAATAAATT 59.060 34.615 5.01 0.00 0.00 1.82
136 137 6.371825 GTCGGAAGTTCACAGAAGGAATAAAT 59.628 38.462 5.01 0.00 0.00 1.40
137 138 5.699458 GTCGGAAGTTCACAGAAGGAATAAA 59.301 40.000 5.01 0.00 0.00 1.40
138 139 5.221561 TGTCGGAAGTTCACAGAAGGAATAA 60.222 40.000 5.01 0.00 0.00 1.40
139 140 4.282449 TGTCGGAAGTTCACAGAAGGAATA 59.718 41.667 5.01 0.00 0.00 1.75
140 141 3.071023 TGTCGGAAGTTCACAGAAGGAAT 59.929 43.478 5.01 0.00 0.00 3.01
141 142 2.432874 TGTCGGAAGTTCACAGAAGGAA 59.567 45.455 5.01 0.00 0.00 3.36
142 143 2.035961 CTGTCGGAAGTTCACAGAAGGA 59.964 50.000 15.09 0.00 40.07 3.36
143 144 2.224066 ACTGTCGGAAGTTCACAGAAGG 60.224 50.000 23.22 10.31 40.07 3.46
144 145 2.797156 CACTGTCGGAAGTTCACAGAAG 59.203 50.000 23.22 14.22 40.07 2.85
145 146 2.483013 CCACTGTCGGAAGTTCACAGAA 60.483 50.000 23.22 0.00 40.07 3.02
146 147 1.068588 CCACTGTCGGAAGTTCACAGA 59.931 52.381 23.22 9.74 40.07 3.41
147 148 1.202533 ACCACTGTCGGAAGTTCACAG 60.203 52.381 17.49 17.49 42.80 3.66
148 149 0.828022 ACCACTGTCGGAAGTTCACA 59.172 50.000 5.01 0.54 0.00 3.58
149 150 1.865340 GAACCACTGTCGGAAGTTCAC 59.135 52.381 5.01 0.00 37.39 3.18
150 151 1.760613 AGAACCACTGTCGGAAGTTCA 59.239 47.619 15.95 0.00 39.39 3.18
151 152 2.528041 AGAACCACTGTCGGAAGTTC 57.472 50.000 9.29 9.29 37.65 3.01
152 153 3.802675 GCTAAGAACCACTGTCGGAAGTT 60.803 47.826 3.76 0.00 0.00 2.66
153 154 2.288886 GCTAAGAACCACTGTCGGAAGT 60.289 50.000 3.76 0.00 0.00 3.01
154 155 2.288825 TGCTAAGAACCACTGTCGGAAG 60.289 50.000 3.76 0.00 0.00 3.46
155 156 1.689813 TGCTAAGAACCACTGTCGGAA 59.310 47.619 3.76 0.00 0.00 4.30
156 157 1.272490 CTGCTAAGAACCACTGTCGGA 59.728 52.381 3.76 0.00 0.00 4.55
157 158 1.272490 TCTGCTAAGAACCACTGTCGG 59.728 52.381 0.00 0.00 0.00 4.79
158 159 2.600731 CTCTGCTAAGAACCACTGTCG 58.399 52.381 0.00 0.00 30.03 4.35
159 160 2.563179 TCCTCTGCTAAGAACCACTGTC 59.437 50.000 0.00 0.00 30.03 3.51
160 161 2.609747 TCCTCTGCTAAGAACCACTGT 58.390 47.619 0.00 0.00 30.03 3.55
161 162 3.330267 GTTCCTCTGCTAAGAACCACTG 58.670 50.000 0.00 0.00 35.03 3.66
162 163 3.686916 GTTCCTCTGCTAAGAACCACT 57.313 47.619 0.00 0.00 35.03 4.00
166 167 4.009370 ACTTGGTTCCTCTGCTAAGAAC 57.991 45.455 0.00 0.00 39.31 3.01
167 168 4.223032 CCTACTTGGTTCCTCTGCTAAGAA 59.777 45.833 0.00 0.00 30.03 2.52
168 169 3.769844 CCTACTTGGTTCCTCTGCTAAGA 59.230 47.826 0.00 0.00 0.00 2.10
169 170 3.769844 TCCTACTTGGTTCCTCTGCTAAG 59.230 47.826 0.00 0.00 37.07 2.18
170 171 3.769844 CTCCTACTTGGTTCCTCTGCTAA 59.230 47.826 0.00 0.00 37.07 3.09
171 172 3.245658 ACTCCTACTTGGTTCCTCTGCTA 60.246 47.826 0.00 0.00 37.07 3.49
172 173 2.183679 CTCCTACTTGGTTCCTCTGCT 58.816 52.381 0.00 0.00 37.07 4.24
173 174 1.903183 ACTCCTACTTGGTTCCTCTGC 59.097 52.381 0.00 0.00 37.07 4.26
174 175 3.866449 GCAACTCCTACTTGGTTCCTCTG 60.866 52.174 0.00 0.00 37.07 3.35
175 176 2.303311 GCAACTCCTACTTGGTTCCTCT 59.697 50.000 0.00 0.00 37.07 3.69
176 177 2.038557 TGCAACTCCTACTTGGTTCCTC 59.961 50.000 0.00 0.00 37.07 3.71
177 178 2.054799 TGCAACTCCTACTTGGTTCCT 58.945 47.619 0.00 0.00 37.07 3.36
178 179 2.152016 GTGCAACTCCTACTTGGTTCC 58.848 52.381 0.00 0.00 37.07 3.62
192 193 8.546597 AAATTTTGGTATAATTCCAGTGCAAC 57.453 30.769 0.00 0.00 36.28 4.17
193 194 7.821846 GGAAATTTTGGTATAATTCCAGTGCAA 59.178 33.333 0.00 0.00 36.28 4.08
194 195 7.327214 GGAAATTTTGGTATAATTCCAGTGCA 58.673 34.615 0.00 0.00 36.28 4.57
195 196 6.761242 GGGAAATTTTGGTATAATTCCAGTGC 59.239 38.462 4.90 0.00 36.28 4.40
196 197 7.981225 CAGGGAAATTTTGGTATAATTCCAGTG 59.019 37.037 4.90 0.00 36.28 3.66
197 198 7.678171 ACAGGGAAATTTTGGTATAATTCCAGT 59.322 33.333 4.90 0.56 36.28 4.00
198 199 8.078060 ACAGGGAAATTTTGGTATAATTCCAG 57.922 34.615 4.90 0.02 36.28 3.86
199 200 9.722317 ATACAGGGAAATTTTGGTATAATTCCA 57.278 29.630 4.90 0.00 0.00 3.53
228 229 6.696411 TCCTCACTTCATGTTGTTTGTTTTT 58.304 32.000 0.00 0.00 0.00 1.94
229 230 6.279513 TCCTCACTTCATGTTGTTTGTTTT 57.720 33.333 0.00 0.00 0.00 2.43
230 231 5.913137 TCCTCACTTCATGTTGTTTGTTT 57.087 34.783 0.00 0.00 0.00 2.83
231 232 5.913137 TTCCTCACTTCATGTTGTTTGTT 57.087 34.783 0.00 0.00 0.00 2.83
232 233 7.765695 ATATTCCTCACTTCATGTTGTTTGT 57.234 32.000 0.00 0.00 0.00 2.83
238 239 9.277783 GCAAGTATATATTCCTCACTTCATGTT 57.722 33.333 0.00 0.00 0.00 2.71
239 240 8.654997 AGCAAGTATATATTCCTCACTTCATGT 58.345 33.333 0.00 0.00 0.00 3.21
240 241 9.499479 AAGCAAGTATATATTCCTCACTTCATG 57.501 33.333 0.00 0.00 0.00 3.07
242 243 9.905713 AAAAGCAAGTATATATTCCTCACTTCA 57.094 29.630 0.00 0.00 0.00 3.02
266 267 2.029649 GCAAGCCAGATGCAGAGAAAAA 60.030 45.455 0.00 0.00 44.83 1.94
300 302 4.261741 GCTCATTTCTCTTTTGCAGACCAA 60.262 41.667 0.00 0.00 0.00 3.67
365 374 3.011144 TGGAGTAAATGAGGGGCATCAAA 59.989 43.478 0.00 0.00 35.78 2.69
378 387 4.565652 CCACACTTGCTACCTGGAGTAAAT 60.566 45.833 0.00 0.00 0.00 1.40
388 397 3.668386 GTGGCCACACTTGCTACC 58.332 61.111 31.23 0.00 44.29 3.18
409 418 3.778629 GTGAGGGAAGGGAATGTTACCTA 59.221 47.826 0.00 0.00 42.00 3.08
425 434 3.245052 ACCTTTTTGAGAGGATGTGAGGG 60.245 47.826 0.00 0.00 37.72 4.30
426 435 4.026356 ACCTTTTTGAGAGGATGTGAGG 57.974 45.455 0.00 0.00 37.72 3.86
427 436 5.409826 GTGTACCTTTTTGAGAGGATGTGAG 59.590 44.000 0.00 0.00 37.72 3.51
428 437 5.305585 GTGTACCTTTTTGAGAGGATGTGA 58.694 41.667 0.00 0.00 37.72 3.58
429 438 4.455877 GGTGTACCTTTTTGAGAGGATGTG 59.544 45.833 0.00 0.00 37.72 3.21
462 471 2.547855 GCTTGTTGGCTTTACTTTGGGG 60.548 50.000 0.00 0.00 0.00 4.96
463 472 2.365293 AGCTTGTTGGCTTTACTTTGGG 59.635 45.455 0.00 0.00 39.86 4.12
464 473 3.733443 AGCTTGTTGGCTTTACTTTGG 57.267 42.857 0.00 0.00 39.86 3.28
471 480 3.316308 CAGAACAGTAGCTTGTTGGCTTT 59.684 43.478 8.50 0.00 41.15 3.51
475 484 4.335315 TGTTTCAGAACAGTAGCTTGTTGG 59.665 41.667 8.50 1.67 41.15 3.77
511 520 6.010219 AGCAAGGTACAATGGTTTCTGTATT 58.990 36.000 0.00 0.00 31.05 1.89
557 583 4.290722 AGAGATTGTCATGGGTCCTTTTCT 59.709 41.667 0.00 0.00 0.00 2.52
592 636 1.142465 CAACCTGATGGGAGGATGGAG 59.858 57.143 0.00 0.00 36.51 3.86
594 638 0.466922 GCAACCTGATGGGAGGATGG 60.467 60.000 0.00 0.00 36.61 3.51
655 703 7.255242 CCTCACTCAAAGCAAAAATCTTAGTGA 60.255 37.037 0.00 0.00 37.07 3.41
689 738 4.015084 TCGAGAGGAAACCTTAGTAGTGG 58.985 47.826 0.00 0.00 31.76 4.00
693 742 6.661304 AAAGTTCGAGAGGAAACCTTAGTA 57.339 37.500 0.00 0.00 36.14 1.82
695 744 6.659776 CAAAAAGTTCGAGAGGAAACCTTAG 58.340 40.000 0.00 0.00 36.14 2.18
709 758 2.356382 TGTGGTACCTGCAAAAAGTTCG 59.644 45.455 14.36 0.00 0.00 3.95
909 970 1.304381 GCCTCAGTTTGGGGATGCA 60.304 57.895 0.00 0.00 41.85 3.96
914 975 2.286365 TTTGTAGCCTCAGTTTGGGG 57.714 50.000 0.00 0.00 42.32 4.96
988 1057 1.270358 GGAAGCCATGACCGATACCTC 60.270 57.143 0.00 0.00 0.00 3.85
1083 1167 0.034283 ACAGGTCCTCCTCGGAGTAC 60.034 60.000 11.76 6.20 44.20 2.73
1089 1173 2.751913 CGACGACAGGTCCTCCTCG 61.752 68.421 12.25 12.25 43.07 4.63
1401 1485 1.219393 GCCCTTCTTCCTCCAGTCG 59.781 63.158 0.00 0.00 0.00 4.18
1482 1566 2.285368 TTGATCCCCTCCACCGCT 60.285 61.111 0.00 0.00 0.00 5.52
1602 1686 1.967066 CTGGAGGCGATGTAGGAGAAT 59.033 52.381 0.00 0.00 0.00 2.40
1783 1870 3.483954 CCTCAATGGCAACGGAGAT 57.516 52.632 13.06 0.00 42.51 2.75
1841 1928 9.745018 ATTGCCAGAAATATATGTATGCTTAGT 57.255 29.630 0.00 0.00 0.00 2.24
1842 1929 9.999009 CATTGCCAGAAATATATGTATGCTTAG 57.001 33.333 0.00 0.00 0.00 2.18
1846 1933 7.395190 TCCATTGCCAGAAATATATGTATGC 57.605 36.000 0.00 0.00 0.00 3.14
1932 2107 7.039313 AGAAGGGTGTAAGTTGAAAAATGTC 57.961 36.000 0.00 0.00 0.00 3.06
1933 2108 7.778382 AGTAGAAGGGTGTAAGTTGAAAAATGT 59.222 33.333 0.00 0.00 0.00 2.71
1934 2109 8.076178 CAGTAGAAGGGTGTAAGTTGAAAAATG 58.924 37.037 0.00 0.00 0.00 2.32
1935 2110 7.230712 CCAGTAGAAGGGTGTAAGTTGAAAAAT 59.769 37.037 0.00 0.00 0.00 1.82
2273 2454 3.197790 CTGGAACATCGGCAGCGG 61.198 66.667 0.00 0.00 38.20 5.52
2310 2506 1.683943 AGGATGGTTCAATGCATCCG 58.316 50.000 0.00 0.00 45.98 4.18
2362 2566 6.918892 AAACCACATAAAAGAAAAGGCAAC 57.081 33.333 0.00 0.00 0.00 4.17
2376 2580 9.245962 CGTGTTAACCAAAATAAAAACCACATA 57.754 29.630 2.48 0.00 0.00 2.29
2377 2581 7.980099 TCGTGTTAACCAAAATAAAAACCACAT 59.020 29.630 2.48 0.00 0.00 3.21
2388 2592 4.879104 TTGTCGTCGTGTTAACCAAAAT 57.121 36.364 2.48 0.00 0.00 1.82
2400 2604 2.691409 ATTCCATCCATTGTCGTCGT 57.309 45.000 0.00 0.00 0.00 4.34
2468 2674 1.266175 ACCTCACTCGACACAGTAACG 59.734 52.381 0.00 0.00 0.00 3.18
2479 2685 2.802787 ACTTTCAGACACCTCACTCG 57.197 50.000 0.00 0.00 0.00 4.18
2486 2692 5.527582 ACTTACATGTGAACTTTCAGACACC 59.472 40.000 9.11 0.00 37.98 4.16
2487 2693 6.037172 ACACTTACATGTGAACTTTCAGACAC 59.963 38.462 9.11 0.00 40.12 3.67
2502 2708 2.771089 ACCTGCACTCACACTTACATG 58.229 47.619 0.00 0.00 0.00 3.21
2537 2743 2.937799 GAGGAAGAGCAGAGCTTGATTG 59.062 50.000 0.00 0.00 39.88 2.67
2626 2833 6.403200 GCATTTTTCTAGATGTGGCGTTTCTA 60.403 38.462 0.00 0.00 0.00 2.10
2636 2903 4.081406 TGGCACTGCATTTTTCTAGATGT 58.919 39.130 2.82 0.00 0.00 3.06
2639 2906 4.766373 TGATTGGCACTGCATTTTTCTAGA 59.234 37.500 2.82 0.00 0.00 2.43
2653 2920 1.888512 AGATGTGGTGTTGATTGGCAC 59.111 47.619 0.00 0.00 35.07 5.01
2657 2924 4.698780 AGATGACAGATGTGGTGTTGATTG 59.301 41.667 0.00 0.00 0.00 2.67
2661 2928 3.620374 GCTAGATGACAGATGTGGTGTTG 59.380 47.826 0.00 0.00 0.00 3.33
2668 2935 3.378512 TCTTGGGCTAGATGACAGATGT 58.621 45.455 0.00 0.00 0.00 3.06
2674 2941 6.597280 GGATGATAAATCTTGGGCTAGATGAC 59.403 42.308 0.00 0.00 35.12 3.06
2675 2942 6.273026 TGGATGATAAATCTTGGGCTAGATGA 59.727 38.462 0.00 0.00 35.12 2.92
2676 2943 6.479006 TGGATGATAAATCTTGGGCTAGATG 58.521 40.000 0.00 0.00 35.12 2.90
2677 2944 6.708885 TGGATGATAAATCTTGGGCTAGAT 57.291 37.500 0.00 0.00 36.44 1.98
2678 2945 6.466326 CCTTGGATGATAAATCTTGGGCTAGA 60.466 42.308 0.00 0.00 0.00 2.43
2679 2946 5.709164 CCTTGGATGATAAATCTTGGGCTAG 59.291 44.000 0.00 0.00 0.00 3.42
2680 2947 5.372363 TCCTTGGATGATAAATCTTGGGCTA 59.628 40.000 0.00 0.00 0.00 3.93
2681 2948 4.168675 TCCTTGGATGATAAATCTTGGGCT 59.831 41.667 0.00 0.00 0.00 5.19
2685 2952 7.121759 ACTGTTGTCCTTGGATGATAAATCTTG 59.878 37.037 0.00 0.00 0.00 3.02
2687 2954 6.725364 ACTGTTGTCCTTGGATGATAAATCT 58.275 36.000 0.00 0.00 0.00 2.40
2688 2955 7.770897 AGTACTGTTGTCCTTGGATGATAAATC 59.229 37.037 0.00 0.00 0.00 2.17
2696 2963 3.181445 TGCAAGTACTGTTGTCCTTGGAT 60.181 43.478 0.00 0.00 39.54 3.41
2716 2983 2.584492 AGGTTTTGCTGTTCAACTGC 57.416 45.000 12.27 12.27 42.44 4.40
2717 2984 3.066621 TGCTAGGTTTTGCTGTTCAACTG 59.933 43.478 0.00 0.00 33.73 3.16
2719 2986 3.632189 CTGCTAGGTTTTGCTGTTCAAC 58.368 45.455 0.00 0.00 33.73 3.18
2756 3042 6.553100 ACCAAAAGGATTGGATTGAAGTGTAA 59.447 34.615 13.81 0.00 42.06 2.41
2764 3050 8.197439 GGTCTAATAACCAAAAGGATTGGATTG 58.803 37.037 13.81 1.40 42.06 2.67
2798 3087 6.994221 TCTGAAGTCCGAAGTAAGAGATTTT 58.006 36.000 0.00 0.00 0.00 1.82
2801 3090 6.591750 TTTCTGAAGTCCGAAGTAAGAGAT 57.408 37.500 0.00 0.00 0.00 2.75
2803 3092 7.540299 ACTATTTCTGAAGTCCGAAGTAAGAG 58.460 38.462 0.00 0.00 0.00 2.85
2804 3093 7.463961 ACTATTTCTGAAGTCCGAAGTAAGA 57.536 36.000 0.00 0.00 0.00 2.10
2805 3094 8.535690 AAACTATTTCTGAAGTCCGAAGTAAG 57.464 34.615 0.00 0.00 0.00 2.34
2806 3095 8.770828 CAAAACTATTTCTGAAGTCCGAAGTAA 58.229 33.333 0.00 0.00 0.00 2.24
2807 3096 7.929785 ACAAAACTATTTCTGAAGTCCGAAGTA 59.070 33.333 0.00 0.00 0.00 2.24
2808 3097 6.766467 ACAAAACTATTTCTGAAGTCCGAAGT 59.234 34.615 0.00 0.00 0.00 3.01
2809 3098 7.190920 ACAAAACTATTTCTGAAGTCCGAAG 57.809 36.000 0.00 0.00 0.00 3.79
2810 3099 7.562454 AACAAAACTATTTCTGAAGTCCGAA 57.438 32.000 0.00 0.00 0.00 4.30
2811 3100 7.066525 ACAAACAAAACTATTTCTGAAGTCCGA 59.933 33.333 0.00 0.00 0.00 4.55
2812 3101 7.193595 ACAAACAAAACTATTTCTGAAGTCCG 58.806 34.615 0.00 0.00 0.00 4.79
2813 3102 8.926715 AACAAACAAAACTATTTCTGAAGTCC 57.073 30.769 0.00 0.00 0.00 3.85
2818 3107 9.179909 TGGTCTAACAAACAAAACTATTTCTGA 57.820 29.630 0.00 0.00 0.00 3.27
2819 3108 9.796120 TTGGTCTAACAAACAAAACTATTTCTG 57.204 29.630 0.00 0.00 0.00 3.02
2820 3109 9.797556 GTTGGTCTAACAAACAAAACTATTTCT 57.202 29.630 0.00 0.00 39.16 2.52
2821 3110 9.027129 GGTTGGTCTAACAAACAAAACTATTTC 57.973 33.333 1.20 0.00 41.18 2.17
2822 3111 8.532819 TGGTTGGTCTAACAAACAAAACTATTT 58.467 29.630 0.00 0.00 44.43 1.40
2823 3112 8.068892 TGGTTGGTCTAACAAACAAAACTATT 57.931 30.769 0.00 0.00 44.43 1.73
2824 3113 7.648039 TGGTTGGTCTAACAAACAAAACTAT 57.352 32.000 0.00 0.00 44.43 2.12
2826 3115 5.986501 TGGTTGGTCTAACAAACAAAACT 57.013 34.783 0.00 0.00 44.43 2.66
2851 3140 6.992715 TCTGAACTCCGAAGAAAGAGATTTTT 59.007 34.615 0.00 0.00 0.00 1.94
2852 3141 6.525629 TCTGAACTCCGAAGAAAGAGATTTT 58.474 36.000 0.00 0.00 0.00 1.82
2853 3142 6.102897 TCTGAACTCCGAAGAAAGAGATTT 57.897 37.500 0.00 0.00 0.00 2.17
2854 3143 5.730296 TCTGAACTCCGAAGAAAGAGATT 57.270 39.130 0.00 0.00 0.00 2.40
2855 3144 5.730296 TTCTGAACTCCGAAGAAAGAGAT 57.270 39.130 0.00 0.00 0.00 2.75
2862 3151 7.386851 ACAAATCTATTTCTGAACTCCGAAGA 58.613 34.615 0.00 0.00 0.00 2.87
2931 3220 9.359653 CCTCAACTTGGATTCCATTAATCTATT 57.640 33.333 6.15 0.00 43.14 1.73
2932 3221 7.449704 GCCTCAACTTGGATTCCATTAATCTAT 59.550 37.037 6.15 0.00 43.14 1.98
2933 3222 6.772716 GCCTCAACTTGGATTCCATTAATCTA 59.227 38.462 6.15 0.00 43.14 1.98
2934 3223 5.595952 GCCTCAACTTGGATTCCATTAATCT 59.404 40.000 6.15 0.00 43.14 2.40
2935 3224 5.221322 GGCCTCAACTTGGATTCCATTAATC 60.221 44.000 6.15 0.00 42.90 1.75
2936 3225 4.651045 GGCCTCAACTTGGATTCCATTAAT 59.349 41.667 6.15 0.00 31.53 1.40
2937 3226 4.023291 GGCCTCAACTTGGATTCCATTAA 58.977 43.478 6.15 0.00 31.53 1.40
2938 3227 3.269381 AGGCCTCAACTTGGATTCCATTA 59.731 43.478 6.15 0.00 31.53 1.90
2939 3228 2.043526 AGGCCTCAACTTGGATTCCATT 59.956 45.455 6.15 0.00 31.53 3.16
2940 3229 1.642762 AGGCCTCAACTTGGATTCCAT 59.357 47.619 6.15 0.00 31.53 3.41
2953 3242 3.176924 AGAGTAGACTTCAAGGCCTCA 57.823 47.619 5.23 0.00 0.00 3.86
2996 3285 8.590204 TGGCAGATGTAGATTATTTATTACCGA 58.410 33.333 0.00 0.00 0.00 4.69
3006 3295 7.392673 GTCATTGGATTGGCAGATGTAGATTAT 59.607 37.037 0.00 0.00 0.00 1.28
3031 3337 4.398044 CCGTGATGCCTTATTTAAACTGGT 59.602 41.667 0.00 0.00 0.00 4.00
3035 3341 5.034797 GCTTCCGTGATGCCTTATTTAAAC 58.965 41.667 0.00 0.00 0.00 2.01
3039 3345 2.024414 GGCTTCCGTGATGCCTTATTT 58.976 47.619 17.78 0.00 45.59 1.40
3055 3362 5.420104 CCTTCAATATGGTTCTTTGAGGCTT 59.580 40.000 0.00 0.00 31.54 4.35
3131 5463 5.814705 GTGAGGTGACTAGAAGGATTCATTG 59.185 44.000 0.00 0.00 46.18 2.82
3133 5465 5.276440 AGTGAGGTGACTAGAAGGATTCAT 58.724 41.667 0.00 0.00 46.18 2.57
3136 5468 5.337788 AGAAGTGAGGTGACTAGAAGGATT 58.662 41.667 0.00 0.00 44.43 3.01
3138 5470 4.390129 AGAAGTGAGGTGACTAGAAGGA 57.610 45.455 0.00 0.00 44.43 3.36
3143 5475 5.048224 TCGGTAAAAGAAGTGAGGTGACTAG 60.048 44.000 0.00 0.00 44.43 2.57
3145 5477 6.854389 TTTTCGGTAAAAGAAGTGAGGTGACT 60.854 38.462 0.00 0.00 35.02 3.41
3146 5478 3.986277 TCGGTAAAAGAAGTGAGGTGAC 58.014 45.455 0.00 0.00 0.00 3.67
3158 5490 4.295870 GTGAAAGCCCTTTTCGGTAAAAG 58.704 43.478 4.06 4.06 46.65 2.27
3162 5494 1.900245 GGTGAAAGCCCTTTTCGGTA 58.100 50.000 0.00 0.00 46.65 4.02
3163 5495 2.728397 GGTGAAAGCCCTTTTCGGT 58.272 52.632 0.00 0.00 46.65 4.69
3192 5524 9.424319 GATGTGTATATCTGGTCGTTGATTTAT 57.576 33.333 0.00 0.00 0.00 1.40
3193 5525 7.870954 GGATGTGTATATCTGGTCGTTGATTTA 59.129 37.037 0.00 0.00 0.00 1.40
3194 5526 6.706270 GGATGTGTATATCTGGTCGTTGATTT 59.294 38.462 0.00 0.00 0.00 2.17
3195 5527 6.223852 GGATGTGTATATCTGGTCGTTGATT 58.776 40.000 0.00 0.00 0.00 2.57
3196 5528 5.564848 CGGATGTGTATATCTGGTCGTTGAT 60.565 44.000 0.00 0.00 31.24 2.57
3197 5529 4.261447 CGGATGTGTATATCTGGTCGTTGA 60.261 45.833 0.00 0.00 31.24 3.18
3198 5530 3.981416 CGGATGTGTATATCTGGTCGTTG 59.019 47.826 0.00 0.00 31.24 4.10
3199 5531 3.005472 CCGGATGTGTATATCTGGTCGTT 59.995 47.826 0.00 0.00 44.93 3.85
3200 5532 2.557056 CCGGATGTGTATATCTGGTCGT 59.443 50.000 0.00 0.00 44.93 4.34
3201 5533 3.217599 CCGGATGTGTATATCTGGTCG 57.782 52.381 0.00 0.00 44.93 4.79
3205 5537 6.586463 GTGTTGTATCCGGATGTGTATATCTG 59.414 42.308 27.55 0.00 34.01 2.90
3206 5538 6.569801 CGTGTTGTATCCGGATGTGTATATCT 60.570 42.308 27.55 0.00 0.00 1.98
3207 5539 5.571741 CGTGTTGTATCCGGATGTGTATATC 59.428 44.000 27.55 9.25 0.00 1.63
3208 5540 5.466819 CGTGTTGTATCCGGATGTGTATAT 58.533 41.667 27.55 0.42 0.00 0.86
3209 5541 4.793678 GCGTGTTGTATCCGGATGTGTATA 60.794 45.833 27.55 2.17 0.00 1.47
3210 5542 3.713288 CGTGTTGTATCCGGATGTGTAT 58.287 45.455 27.55 2.14 0.00 2.29
3211 5543 2.736081 GCGTGTTGTATCCGGATGTGTA 60.736 50.000 27.55 3.47 0.00 2.90
3212 5544 2.004583 CGTGTTGTATCCGGATGTGT 57.995 50.000 27.55 3.44 0.00 3.72
3213 5545 0.650512 GCGTGTTGTATCCGGATGTG 59.349 55.000 27.55 9.22 0.00 3.21
3214 5546 0.461339 GGCGTGTTGTATCCGGATGT 60.461 55.000 27.55 4.75 0.00 3.06
3215 5547 0.461163 TGGCGTGTTGTATCCGGATG 60.461 55.000 27.55 9.27 0.00 3.51
3216 5548 0.468226 ATGGCGTGTTGTATCCGGAT 59.532 50.000 22.95 22.95 0.00 4.18
3217 5549 0.179094 GATGGCGTGTTGTATCCGGA 60.179 55.000 6.61 6.61 0.00 5.14
3218 5550 0.461163 TGATGGCGTGTTGTATCCGG 60.461 55.000 0.00 0.00 0.00 5.14
3219 5551 1.062002 GTTGATGGCGTGTTGTATCCG 59.938 52.381 0.00 0.00 0.00 4.18
3220 5552 2.080693 TGTTGATGGCGTGTTGTATCC 58.919 47.619 0.00 0.00 0.00 2.59
3221 5553 2.482336 TGTGTTGATGGCGTGTTGTATC 59.518 45.455 0.00 0.00 0.00 2.24
3222 5554 2.225491 GTGTGTTGATGGCGTGTTGTAT 59.775 45.455 0.00 0.00 0.00 2.29
3223 5555 1.600013 GTGTGTTGATGGCGTGTTGTA 59.400 47.619 0.00 0.00 0.00 2.41
3224 5556 0.380378 GTGTGTTGATGGCGTGTTGT 59.620 50.000 0.00 0.00 0.00 3.32
3225 5557 0.380024 TGTGTGTTGATGGCGTGTTG 59.620 50.000 0.00 0.00 0.00 3.33
3226 5558 0.380378 GTGTGTGTTGATGGCGTGTT 59.620 50.000 0.00 0.00 0.00 3.32
3227 5559 0.746204 TGTGTGTGTTGATGGCGTGT 60.746 50.000 0.00 0.00 0.00 4.49
3228 5560 0.316937 GTGTGTGTGTTGATGGCGTG 60.317 55.000 0.00 0.00 0.00 5.34
3229 5561 1.444119 GGTGTGTGTGTTGATGGCGT 61.444 55.000 0.00 0.00 0.00 5.68
3230 5562 1.282570 GGTGTGTGTGTTGATGGCG 59.717 57.895 0.00 0.00 0.00 5.69
3231 5563 0.030638 GTGGTGTGTGTGTTGATGGC 59.969 55.000 0.00 0.00 0.00 4.40
3232 5564 1.065401 GTGTGGTGTGTGTGTTGATGG 59.935 52.381 0.00 0.00 0.00 3.51
3233 5565 2.016318 AGTGTGGTGTGTGTGTTGATG 58.984 47.619 0.00 0.00 0.00 3.07
3234 5566 2.288666 GAGTGTGGTGTGTGTGTTGAT 58.711 47.619 0.00 0.00 0.00 2.57
3235 5567 1.002544 TGAGTGTGGTGTGTGTGTTGA 59.997 47.619 0.00 0.00 0.00 3.18
3236 5568 1.130373 GTGAGTGTGGTGTGTGTGTTG 59.870 52.381 0.00 0.00 0.00 3.33
3237 5569 1.448985 GTGAGTGTGGTGTGTGTGTT 58.551 50.000 0.00 0.00 0.00 3.32
3238 5570 0.392461 GGTGAGTGTGGTGTGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
3239 5571 1.095228 GGGTGAGTGTGGTGTGTGTG 61.095 60.000 0.00 0.00 0.00 3.82
3240 5572 1.223487 GGGTGAGTGTGGTGTGTGT 59.777 57.895 0.00 0.00 0.00 3.72
3241 5573 0.393673 TTGGGTGAGTGTGGTGTGTG 60.394 55.000 0.00 0.00 0.00 3.82
3242 5574 0.107214 CTTGGGTGAGTGTGGTGTGT 60.107 55.000 0.00 0.00 0.00 3.72
3243 5575 0.819259 CCTTGGGTGAGTGTGGTGTG 60.819 60.000 0.00 0.00 0.00 3.82
3244 5576 1.279025 ACCTTGGGTGAGTGTGGTGT 61.279 55.000 0.00 0.00 32.98 4.16
3245 5577 1.531748 ACCTTGGGTGAGTGTGGTG 59.468 57.895 0.00 0.00 32.98 4.17
3246 5578 4.083155 ACCTTGGGTGAGTGTGGT 57.917 55.556 0.00 0.00 32.98 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.