Multiple sequence alignment - TraesCS1D01G026000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G026000 chr1D 100.000 4820 0 0 1 4820 10664429 10659610 0.000000e+00 8901.0
1 TraesCS1D01G026000 chr1D 84.525 2798 427 5 1029 3825 7280393 7277601 0.000000e+00 2763.0
2 TraesCS1D01G026000 chr1D 83.708 2799 435 14 1029 3821 7606214 7608997 0.000000e+00 2623.0
3 TraesCS1D01G026000 chr1D 89.181 342 33 3 4482 4819 10596381 10596040 1.600000e-114 424.0
4 TraesCS1D01G026000 chr1D 90.196 153 15 0 780 932 10663548 10663396 2.940000e-47 200.0
5 TraesCS1D01G026000 chr1D 90.196 153 15 0 882 1034 10663650 10663498 2.940000e-47 200.0
6 TraesCS1D01G026000 chr1A 94.650 3832 169 8 996 4820 12306496 12302694 0.000000e+00 5908.0
7 TraesCS1D01G026000 chr1A 88.464 2826 323 1 998 3820 12503828 12506653 0.000000e+00 3410.0
8 TraesCS1D01G026000 chr1A 88.067 2824 337 0 1000 3823 12210665 12207842 0.000000e+00 3349.0
9 TraesCS1D01G026000 chr1A 85.403 2795 400 6 1029 3821 8718462 8715674 0.000000e+00 2894.0
10 TraesCS1D01G026000 chr1A 85.075 536 55 11 140 654 12307339 12306808 1.540000e-144 523.0
11 TraesCS1D01G026000 chr1A 90.449 356 30 3 4469 4820 12193728 12193373 2.630000e-127 466.0
12 TraesCS1D01G026000 chr1B 84.478 2796 425 8 1029 3821 9989557 9992346 0.000000e+00 2750.0
13 TraesCS1D01G026000 chr1B 88.470 2255 255 2 1571 3820 15877084 15879338 0.000000e+00 2719.0
14 TraesCS1D01G026000 chr1B 83.536 2800 427 22 1030 3821 9558600 9555827 0.000000e+00 2586.0
15 TraesCS1D01G026000 chr1B 92.742 620 43 1 932 1549 15876475 15877094 0.000000e+00 894.0
16 TraesCS1D01G026000 chr1B 91.402 535 36 4 4280 4809 15715767 15715238 0.000000e+00 725.0
17 TraesCS1D01G026000 chr1B 79.881 1009 140 34 3838 4815 16123897 16124873 0.000000e+00 680.0
18 TraesCS1D01G026000 chr1B 94.737 114 6 0 4044 4157 15716031 15715918 1.380000e-40 178.0
19 TraesCS1D01G026000 chr1B 94.175 103 4 1 882 982 15876476 15876578 6.460000e-34 156.0
20 TraesCS1D01G026000 chr1B 90.566 53 3 1 984 1034 15876476 15876528 8.660000e-08 69.4
21 TraesCS1D01G026000 chr2A 78.972 2820 530 45 1029 3827 46826414 46823637 0.000000e+00 1864.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G026000 chr1D 10659610 10664429 4819 True 3100.333333 8901 93.46400 1 4820 3 chr1D.!!$R3 4819
1 TraesCS1D01G026000 chr1D 7277601 7280393 2792 True 2763.000000 2763 84.52500 1029 3825 1 chr1D.!!$R1 2796
2 TraesCS1D01G026000 chr1D 7606214 7608997 2783 False 2623.000000 2623 83.70800 1029 3821 1 chr1D.!!$F1 2792
3 TraesCS1D01G026000 chr1A 12503828 12506653 2825 False 3410.000000 3410 88.46400 998 3820 1 chr1A.!!$F1 2822
4 TraesCS1D01G026000 chr1A 12207842 12210665 2823 True 3349.000000 3349 88.06700 1000 3823 1 chr1A.!!$R3 2823
5 TraesCS1D01G026000 chr1A 12302694 12307339 4645 True 3215.500000 5908 89.86250 140 4820 2 chr1A.!!$R4 4680
6 TraesCS1D01G026000 chr1A 8715674 8718462 2788 True 2894.000000 2894 85.40300 1029 3821 1 chr1A.!!$R1 2792
7 TraesCS1D01G026000 chr1B 9989557 9992346 2789 False 2750.000000 2750 84.47800 1029 3821 1 chr1B.!!$F1 2792
8 TraesCS1D01G026000 chr1B 9555827 9558600 2773 True 2586.000000 2586 83.53600 1030 3821 1 chr1B.!!$R1 2791
9 TraesCS1D01G026000 chr1B 15876475 15879338 2863 False 959.600000 2719 91.48825 882 3820 4 chr1B.!!$F3 2938
10 TraesCS1D01G026000 chr1B 16123897 16124873 976 False 680.000000 680 79.88100 3838 4815 1 chr1B.!!$F2 977
11 TraesCS1D01G026000 chr1B 15715238 15716031 793 True 451.500000 725 93.06950 4044 4809 2 chr1B.!!$R2 765
12 TraesCS1D01G026000 chr2A 46823637 46826414 2777 True 1864.000000 1864 78.97200 1029 3827 1 chr2A.!!$R1 2798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 492 0.034670 AAGGTGGCTTCATGCTCTCC 60.035 55.0 0.00 0.0 42.39 3.71 F
1547 1704 0.037303 ATTGATAGGCAGCGATGGGG 59.963 55.0 1.46 0.0 0.00 4.96 F
1564 1721 0.251341 GGGAGGCTGCTTTCCAGAAA 60.251 55.0 19.94 0.0 44.64 2.52 F
1766 1955 0.776810 TGGATTGTGGTGTCATGGGT 59.223 50.0 0.00 0.0 0.00 4.51 F
3012 3215 1.084370 CGCCAGGAATCGTGAAGGTC 61.084 60.0 4.32 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1857 0.041090 TTTTCCCCAAGCCTCCCATC 59.959 55.000 0.00 0.00 0.00 3.51 R
3024 3227 1.053424 ACCTGTCGGCTAAAAGGTGA 58.947 50.000 0.00 0.00 41.52 4.02 R
3141 3344 1.214589 CAAGTCCTTGCTGGCATGC 59.785 57.895 9.90 9.90 33.45 4.06 R
3705 3908 2.238395 GAGCTTCTTCAGGGATCCAACT 59.762 50.000 15.23 0.00 0.00 3.16 R
4522 4817 0.387622 TTCGTTAGTTGCTCCGACGG 60.388 55.000 7.84 7.84 34.72 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.618236 GGTTTTCTACCCATCTATGGTACC 58.382 45.833 4.43 4.43 46.65 3.34
29 30 5.131475 GGTTTTCTACCCATCTATGGTACCA 59.869 44.000 18.99 18.99 46.65 3.25
30 31 5.881923 TTTCTACCCATCTATGGTACCAC 57.118 43.478 19.09 0.00 46.65 4.16
31 32 3.853207 TCTACCCATCTATGGTACCACC 58.147 50.000 19.09 0.00 46.65 4.61
32 33 1.420430 ACCCATCTATGGTACCACCG 58.580 55.000 19.09 11.41 46.65 4.94
33 34 1.062734 ACCCATCTATGGTACCACCGA 60.063 52.381 19.09 16.70 46.65 4.69
34 35 1.343465 CCCATCTATGGTACCACCGAC 59.657 57.143 19.09 0.00 46.65 4.79
35 36 2.317040 CCATCTATGGTACCACCGACT 58.683 52.381 19.09 2.99 42.58 4.18
36 37 3.493334 CCATCTATGGTACCACCGACTA 58.507 50.000 19.09 4.21 42.58 2.59
37 38 3.893200 CCATCTATGGTACCACCGACTAA 59.107 47.826 19.09 0.00 42.58 2.24
38 39 4.261909 CCATCTATGGTACCACCGACTAAC 60.262 50.000 19.09 0.00 42.58 2.34
39 40 3.966979 TCTATGGTACCACCGACTAACA 58.033 45.455 19.09 0.00 42.58 2.41
40 41 4.539726 TCTATGGTACCACCGACTAACAT 58.460 43.478 19.09 0.00 42.58 2.71
41 42 5.693961 TCTATGGTACCACCGACTAACATA 58.306 41.667 19.09 0.21 42.58 2.29
42 43 4.931661 ATGGTACCACCGACTAACATAG 57.068 45.455 19.09 0.00 42.58 2.23
43 44 3.966979 TGGTACCACCGACTAACATAGA 58.033 45.455 11.60 0.00 42.58 1.98
44 45 4.539726 TGGTACCACCGACTAACATAGAT 58.460 43.478 11.60 0.00 42.58 1.98
45 46 4.340097 TGGTACCACCGACTAACATAGATG 59.660 45.833 11.60 0.00 42.58 2.90
46 47 4.581824 GGTACCACCGACTAACATAGATGA 59.418 45.833 7.15 0.00 0.00 2.92
47 48 5.243283 GGTACCACCGACTAACATAGATGAT 59.757 44.000 7.15 0.00 0.00 2.45
48 49 5.201713 ACCACCGACTAACATAGATGATG 57.798 43.478 0.00 0.00 41.79 3.07
61 62 6.892310 CATAGATGATGTTTCGTCACTCAA 57.108 37.500 0.00 0.00 39.89 3.02
62 63 7.474398 CATAGATGATGTTTCGTCACTCAAT 57.526 36.000 0.00 0.00 39.89 2.57
63 64 7.913423 CATAGATGATGTTTCGTCACTCAATT 58.087 34.615 0.00 0.00 39.89 2.32
64 65 6.808008 AGATGATGTTTCGTCACTCAATTT 57.192 33.333 0.00 0.00 39.89 1.82
65 66 7.206981 AGATGATGTTTCGTCACTCAATTTT 57.793 32.000 0.00 0.00 39.89 1.82
66 67 7.651808 AGATGATGTTTCGTCACTCAATTTTT 58.348 30.769 0.00 0.00 39.89 1.94
67 68 7.805071 AGATGATGTTTCGTCACTCAATTTTTC 59.195 33.333 0.00 0.00 39.89 2.29
68 69 6.790282 TGATGTTTCGTCACTCAATTTTTCA 58.210 32.000 0.00 0.00 0.00 2.69
69 70 6.912051 TGATGTTTCGTCACTCAATTTTTCAG 59.088 34.615 0.00 0.00 0.00 3.02
70 71 5.034152 TGTTTCGTCACTCAATTTTTCAGC 58.966 37.500 0.00 0.00 0.00 4.26
71 72 3.519908 TCGTCACTCAATTTTTCAGCG 57.480 42.857 0.00 0.00 0.00 5.18
72 73 2.869801 TCGTCACTCAATTTTTCAGCGT 59.130 40.909 0.00 0.00 0.00 5.07
73 74 2.966708 CGTCACTCAATTTTTCAGCGTG 59.033 45.455 0.00 0.00 0.00 5.34
74 75 3.546020 CGTCACTCAATTTTTCAGCGTGT 60.546 43.478 0.00 0.00 0.00 4.49
75 76 4.351192 GTCACTCAATTTTTCAGCGTGTT 58.649 39.130 0.00 0.00 0.00 3.32
76 77 4.437820 GTCACTCAATTTTTCAGCGTGTTC 59.562 41.667 0.00 0.00 0.00 3.18
77 78 4.095632 TCACTCAATTTTTCAGCGTGTTCA 59.904 37.500 0.00 0.00 0.00 3.18
78 79 4.797868 CACTCAATTTTTCAGCGTGTTCAA 59.202 37.500 0.00 0.00 0.00 2.69
79 80 5.459762 CACTCAATTTTTCAGCGTGTTCAAT 59.540 36.000 0.00 0.00 0.00 2.57
80 81 6.636447 CACTCAATTTTTCAGCGTGTTCAATA 59.364 34.615 0.00 0.00 0.00 1.90
81 82 7.167302 CACTCAATTTTTCAGCGTGTTCAATAA 59.833 33.333 0.00 0.00 0.00 1.40
82 83 7.379529 ACTCAATTTTTCAGCGTGTTCAATAAG 59.620 33.333 0.00 0.00 0.00 1.73
83 84 7.199766 TCAATTTTTCAGCGTGTTCAATAAGT 58.800 30.769 0.00 0.00 0.00 2.24
84 85 6.991485 ATTTTTCAGCGTGTTCAATAAGTG 57.009 33.333 0.00 0.00 0.00 3.16
85 86 4.481930 TTTCAGCGTGTTCAATAAGTGG 57.518 40.909 0.00 0.00 0.00 4.00
86 87 3.394674 TCAGCGTGTTCAATAAGTGGA 57.605 42.857 0.00 0.00 0.00 4.02
87 88 3.937814 TCAGCGTGTTCAATAAGTGGAT 58.062 40.909 0.00 0.00 0.00 3.41
88 89 4.323417 TCAGCGTGTTCAATAAGTGGATT 58.677 39.130 0.00 0.00 0.00 3.01
89 90 4.759693 TCAGCGTGTTCAATAAGTGGATTT 59.240 37.500 0.00 0.00 0.00 2.17
90 91 4.853196 CAGCGTGTTCAATAAGTGGATTTG 59.147 41.667 0.00 0.00 0.00 2.32
91 92 3.608073 GCGTGTTCAATAAGTGGATTTGC 59.392 43.478 0.00 0.00 0.00 3.68
92 93 4.615912 GCGTGTTCAATAAGTGGATTTGCT 60.616 41.667 0.00 0.00 0.00 3.91
93 94 4.853196 CGTGTTCAATAAGTGGATTTGCTG 59.147 41.667 0.00 0.00 0.00 4.41
94 95 5.562696 CGTGTTCAATAAGTGGATTTGCTGT 60.563 40.000 0.00 0.00 0.00 4.40
95 96 5.858581 GTGTTCAATAAGTGGATTTGCTGTC 59.141 40.000 0.00 0.00 0.00 3.51
96 97 5.048083 TGTTCAATAAGTGGATTTGCTGTCC 60.048 40.000 0.00 0.00 36.26 4.02
97 98 4.922206 TCAATAAGTGGATTTGCTGTCCT 58.078 39.130 4.63 0.00 36.68 3.85
98 99 4.701651 TCAATAAGTGGATTTGCTGTCCTG 59.298 41.667 4.63 0.00 36.68 3.86
99 100 2.664402 AAGTGGATTTGCTGTCCTGT 57.336 45.000 4.63 0.00 36.68 4.00
100 101 3.788227 AAGTGGATTTGCTGTCCTGTA 57.212 42.857 4.63 0.00 36.68 2.74
101 102 3.059352 AGTGGATTTGCTGTCCTGTAC 57.941 47.619 4.63 0.00 36.68 2.90
102 103 2.371841 AGTGGATTTGCTGTCCTGTACA 59.628 45.455 0.00 0.00 36.68 2.90
103 104 3.146066 GTGGATTTGCTGTCCTGTACAA 58.854 45.455 0.00 0.00 37.74 2.41
104 105 3.058224 GTGGATTTGCTGTCCTGTACAAC 60.058 47.826 0.00 0.00 37.74 3.32
105 106 3.181445 TGGATTTGCTGTCCTGTACAACT 60.181 43.478 0.00 0.00 37.74 3.16
106 107 3.189287 GGATTTGCTGTCCTGTACAACTG 59.811 47.826 0.00 0.00 37.74 3.16
107 108 3.275617 TTTGCTGTCCTGTACAACTGT 57.724 42.857 0.00 0.00 37.74 3.55
108 109 4.409718 TTTGCTGTCCTGTACAACTGTA 57.590 40.909 0.00 0.00 37.74 2.74
109 110 4.409718 TTGCTGTCCTGTACAACTGTAA 57.590 40.909 0.00 0.76 37.74 2.41
110 111 3.990092 TGCTGTCCTGTACAACTGTAAG 58.010 45.455 0.00 0.00 37.74 2.34
165 166 0.110486 CTAGTGTGTTTGGGGCTGGT 59.890 55.000 0.00 0.00 0.00 4.00
166 167 0.179004 TAGTGTGTTTGGGGCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
185 186 2.755836 GAAGTTTTGCGCACTTCTGA 57.244 45.000 24.29 2.68 44.65 3.27
194 195 1.002468 GCGCACTTCTGAATGTGTGTT 60.002 47.619 22.38 0.00 43.91 3.32
195 196 2.223144 GCGCACTTCTGAATGTGTGTTA 59.777 45.455 22.38 0.00 43.91 2.41
212 213 4.040339 TGTGTTAGACAGATGAAAGGCAGA 59.960 41.667 0.00 0.00 0.00 4.26
225 226 3.194719 GCAGAGGATGTTGGCTGC 58.805 61.111 0.00 0.00 45.64 5.25
232 233 0.966875 GGATGTTGGCTGCATCACCA 60.967 55.000 18.33 0.00 43.17 4.17
233 234 1.108776 GATGTTGGCTGCATCACCAT 58.891 50.000 13.98 2.56 41.56 3.55
235 236 1.462616 TGTTGGCTGCATCACCATAC 58.537 50.000 0.50 6.53 35.42 2.39
239 240 1.450531 GGCTGCATCACCATACTGGC 61.451 60.000 0.50 0.00 42.67 4.85
316 329 3.056107 ACAATAGCGCTTGTCTTCCTACA 60.056 43.478 18.68 0.00 34.26 2.74
317 330 4.122776 CAATAGCGCTTGTCTTCCTACAT 58.877 43.478 18.68 0.00 0.00 2.29
318 331 2.015736 AGCGCTTGTCTTCCTACATG 57.984 50.000 2.64 0.00 0.00 3.21
319 332 1.276421 AGCGCTTGTCTTCCTACATGT 59.724 47.619 2.64 2.69 0.00 3.21
321 334 3.056107 AGCGCTTGTCTTCCTACATGTTA 60.056 43.478 2.64 0.00 0.00 2.41
324 337 5.727791 GCGCTTGTCTTCCTACATGTTATTG 60.728 44.000 2.30 0.00 0.00 1.90
325 338 5.220662 CGCTTGTCTTCCTACATGTTATTGG 60.221 44.000 2.30 2.03 0.00 3.16
326 339 5.449177 GCTTGTCTTCCTACATGTTATTGGC 60.449 44.000 2.30 0.00 0.00 4.52
327 340 5.172687 TGTCTTCCTACATGTTATTGGCA 57.827 39.130 2.30 0.00 0.00 4.92
330 349 3.643199 TCCTACATGTTATTGGCAGCA 57.357 42.857 2.30 0.00 0.00 4.41
372 391 2.288825 TGCCTAAGCACTACTGACACAC 60.289 50.000 0.00 0.00 46.52 3.82
373 392 2.931320 GCCTAAGCACTACTGACACACC 60.931 54.545 0.00 0.00 39.53 4.16
374 393 2.299013 CCTAAGCACTACTGACACACCA 59.701 50.000 0.00 0.00 0.00 4.17
375 394 2.533266 AAGCACTACTGACACACCAG 57.467 50.000 0.00 0.00 39.93 4.00
377 396 1.341531 AGCACTACTGACACACCAGTC 59.658 52.381 0.00 0.00 45.37 3.51
388 407 5.902681 TGACACACCAGTCACTAATATAGC 58.097 41.667 0.00 0.00 43.18 2.97
390 409 6.150396 ACACACCAGTCACTAATATAGCTC 57.850 41.667 0.00 0.00 0.00 4.09
405 424 9.702494 CTAATATAGCTCATGTTTCATCACTCA 57.298 33.333 0.00 0.00 0.00 3.41
416 435 9.681692 CATGTTTCATCACTCAATTTTTCAGTA 57.318 29.630 0.00 0.00 0.00 2.74
417 436 9.683069 ATGTTTCATCACTCAATTTTTCAGTAC 57.317 29.630 0.00 0.00 0.00 2.73
418 437 8.134895 TGTTTCATCACTCAATTTTTCAGTACC 58.865 33.333 0.00 0.00 0.00 3.34
419 438 8.352942 GTTTCATCACTCAATTTTTCAGTACCT 58.647 33.333 0.00 0.00 0.00 3.08
421 440 9.567776 TTCATCACTCAATTTTTCAGTACCTTA 57.432 29.630 0.00 0.00 0.00 2.69
423 442 9.994432 CATCACTCAATTTTTCAGTACCTTATC 57.006 33.333 0.00 0.00 0.00 1.75
424 443 9.739276 ATCACTCAATTTTTCAGTACCTTATCA 57.261 29.630 0.00 0.00 0.00 2.15
436 455 7.110155 TCAGTACCTTATCAAGTGGATTTTCC 58.890 38.462 0.00 0.00 37.44 3.13
464 483 3.402628 TGAGAACTGTAAGGTGGCTTC 57.597 47.619 0.00 0.00 39.30 3.86
468 487 1.826385 ACTGTAAGGTGGCTTCATGC 58.174 50.000 0.00 0.00 39.30 4.06
472 491 2.284190 GTAAGGTGGCTTCATGCTCTC 58.716 52.381 0.00 0.00 42.39 3.20
473 492 0.034670 AAGGTGGCTTCATGCTCTCC 60.035 55.000 0.00 0.00 42.39 3.71
480 499 2.560105 GGCTTCATGCTCTCCTTTTTGT 59.440 45.455 0.00 0.00 42.39 2.83
481 500 3.572584 GCTTCATGCTCTCCTTTTTGTG 58.427 45.455 0.00 0.00 38.95 3.33
483 502 4.791974 CTTCATGCTCTCCTTTTTGTGTC 58.208 43.478 0.00 0.00 0.00 3.67
495 514 0.307453 TTTGTGTCGCTGTGTGATGC 59.693 50.000 0.00 0.00 0.00 3.91
502 521 1.946081 TCGCTGTGTGATGCAGAAAAA 59.054 42.857 0.00 0.00 36.12 1.94
503 522 2.031769 TCGCTGTGTGATGCAGAAAAAG 60.032 45.455 0.00 0.00 36.12 2.27
504 523 2.056577 GCTGTGTGATGCAGAAAAAGC 58.943 47.619 0.00 0.00 36.12 3.51
512 534 7.756272 TGTGTGATGCAGAAAAAGCTTTATATG 59.244 33.333 13.10 11.94 0.00 1.78
559 581 4.041723 AGTTTTGCGCAGTTTTGTATGTC 58.958 39.130 11.31 0.00 0.00 3.06
566 588 3.120546 CGCAGTTTTGTATGTCTGTGAGG 60.121 47.826 0.00 0.00 39.73 3.86
568 590 3.814842 CAGTTTTGTATGTCTGTGAGGCA 59.185 43.478 0.00 0.00 32.55 4.75
620 642 7.433131 CCATATCGGTTTTCAGTGAAATGAATG 59.567 37.037 18.69 17.83 38.90 2.67
647 669 3.571401 GTGGGATCCATGCTCCTTTTATG 59.429 47.826 15.23 0.00 35.28 1.90
654 676 6.271488 TCCATGCTCCTTTTATGTCAAAAG 57.729 37.500 3.09 3.09 37.08 2.27
656 678 6.151648 TCCATGCTCCTTTTATGTCAAAAGAG 59.848 38.462 10.30 7.45 39.04 2.85
659 681 8.514594 CATGCTCCTTTTATGTCAAAAGAGTAA 58.485 33.333 10.30 2.26 39.04 2.24
673 795 9.604626 GTCAAAAGAGTAATATAATCATGCAGC 57.395 33.333 0.00 0.00 0.00 5.25
674 796 9.341078 TCAAAAGAGTAATATAATCATGCAGCA 57.659 29.630 0.00 0.00 0.00 4.41
686 808 1.919956 ATGCAGCAGCGCTTGTCTTC 61.920 55.000 7.50 0.00 46.23 2.87
687 809 2.473378 CAGCAGCGCTTGTCTTCG 59.527 61.111 7.50 0.00 36.40 3.79
688 810 2.029666 AGCAGCGCTTGTCTTCGT 59.970 55.556 7.50 0.00 33.89 3.85
694 816 1.137513 GCGCTTGTCTTCGTTGTACT 58.862 50.000 0.00 0.00 0.00 2.73
712 834 5.185454 TGTACTTGTTATGGGCAGAAGATG 58.815 41.667 0.00 0.00 0.00 2.90
735 858 7.455641 TGATTAAGCTCGGTTAAAAATTGGA 57.544 32.000 5.53 0.00 0.00 3.53
744 867 7.115236 GCTCGGTTAAAAATTGGATAAACGTTT 59.885 33.333 18.90 18.90 39.88 3.60
757 880 5.978322 GGATAAACGTTTTAAACACCAAGCA 59.022 36.000 20.19 0.00 0.00 3.91
765 888 6.399880 CGTTTTAAACACCAAGCAGCAATATG 60.400 38.462 8.61 0.00 0.00 1.78
769 892 1.361271 CCAAGCAGCAATATGGCCG 59.639 57.895 0.00 0.00 0.00 6.13
775 898 0.099259 CAGCAATATGGCCGTGTGTG 59.901 55.000 8.05 3.82 0.00 3.82
776 899 1.226660 GCAATATGGCCGTGTGTGC 60.227 57.895 8.05 10.52 0.00 4.57
783 906 2.672996 GCCGTGTGTGCCATCCTT 60.673 61.111 0.00 0.00 0.00 3.36
784 907 2.268076 GCCGTGTGTGCCATCCTTT 61.268 57.895 0.00 0.00 0.00 3.11
785 908 1.580942 CCGTGTGTGCCATCCTTTG 59.419 57.895 0.00 0.00 0.00 2.77
786 909 1.172180 CCGTGTGTGCCATCCTTTGT 61.172 55.000 0.00 0.00 0.00 2.83
787 910 1.518325 CGTGTGTGCCATCCTTTGTA 58.482 50.000 0.00 0.00 0.00 2.41
788 911 1.876799 CGTGTGTGCCATCCTTTGTAA 59.123 47.619 0.00 0.00 0.00 2.41
789 912 2.292016 CGTGTGTGCCATCCTTTGTAAA 59.708 45.455 0.00 0.00 0.00 2.01
790 913 3.638484 GTGTGTGCCATCCTTTGTAAAC 58.362 45.455 0.00 0.00 0.00 2.01
791 914 3.067461 GTGTGTGCCATCCTTTGTAAACA 59.933 43.478 0.00 0.00 0.00 2.83
792 915 3.894427 TGTGTGCCATCCTTTGTAAACAT 59.106 39.130 0.00 0.00 0.00 2.71
793 916 5.048364 GTGTGTGCCATCCTTTGTAAACATA 60.048 40.000 0.00 0.00 0.00 2.29
794 917 5.536538 TGTGTGCCATCCTTTGTAAACATAA 59.463 36.000 0.00 0.00 0.00 1.90
795 918 6.210385 TGTGTGCCATCCTTTGTAAACATAAT 59.790 34.615 0.00 0.00 0.00 1.28
796 919 7.394641 TGTGTGCCATCCTTTGTAAACATAATA 59.605 33.333 0.00 0.00 0.00 0.98
797 920 7.700656 GTGTGCCATCCTTTGTAAACATAATAC 59.299 37.037 0.00 0.00 0.00 1.89
798 921 6.910433 GTGCCATCCTTTGTAAACATAATACG 59.090 38.462 0.00 0.00 0.00 3.06
799 922 5.912955 GCCATCCTTTGTAAACATAATACGC 59.087 40.000 0.00 0.00 0.00 4.42
800 923 6.435428 CCATCCTTTGTAAACATAATACGCC 58.565 40.000 0.00 0.00 0.00 5.68
801 924 5.721876 TCCTTTGTAAACATAATACGCCG 57.278 39.130 0.00 0.00 0.00 6.46
802 925 4.034279 TCCTTTGTAAACATAATACGCCGC 59.966 41.667 0.00 0.00 0.00 6.53
803 926 4.201832 CCTTTGTAAACATAATACGCCGCA 60.202 41.667 0.00 0.00 0.00 5.69
804 927 5.487153 TTTGTAAACATAATACGCCGCAT 57.513 34.783 0.00 0.00 0.00 4.73
805 928 5.487153 TTGTAAACATAATACGCCGCATT 57.513 34.783 0.00 0.00 0.00 3.56
806 929 5.487153 TGTAAACATAATACGCCGCATTT 57.513 34.783 0.00 0.00 0.00 2.32
807 930 5.881447 TGTAAACATAATACGCCGCATTTT 58.119 33.333 0.00 0.00 0.00 1.82
808 931 5.739630 TGTAAACATAATACGCCGCATTTTG 59.260 36.000 0.00 0.00 0.00 2.44
809 932 4.364415 AACATAATACGCCGCATTTTGT 57.636 36.364 1.03 1.03 31.54 2.83
810 933 3.947626 ACATAATACGCCGCATTTTGTC 58.052 40.909 1.03 0.00 0.00 3.18
811 934 3.625764 ACATAATACGCCGCATTTTGTCT 59.374 39.130 1.03 0.00 0.00 3.41
812 935 4.812091 ACATAATACGCCGCATTTTGTCTA 59.188 37.500 1.03 0.00 0.00 2.59
813 936 5.294799 ACATAATACGCCGCATTTTGTCTAA 59.705 36.000 1.03 0.00 0.00 2.10
814 937 3.944422 ATACGCCGCATTTTGTCTAAG 57.056 42.857 0.00 0.00 0.00 2.18
815 938 0.168128 ACGCCGCATTTTGTCTAAGC 59.832 50.000 0.00 0.00 0.00 3.09
816 939 0.447801 CGCCGCATTTTGTCTAAGCT 59.552 50.000 0.00 0.00 0.00 3.74
817 940 1.791555 CGCCGCATTTTGTCTAAGCTG 60.792 52.381 0.00 0.00 0.00 4.24
818 941 1.468520 GCCGCATTTTGTCTAAGCTGA 59.531 47.619 0.00 0.00 0.00 4.26
819 942 2.095263 GCCGCATTTTGTCTAAGCTGAA 60.095 45.455 0.00 0.00 0.00 3.02
820 943 3.751621 CCGCATTTTGTCTAAGCTGAAG 58.248 45.455 0.00 0.00 0.00 3.02
821 944 3.426695 CCGCATTTTGTCTAAGCTGAAGG 60.427 47.826 0.00 0.00 0.00 3.46
822 945 3.189287 CGCATTTTGTCTAAGCTGAAGGT 59.811 43.478 0.00 0.00 0.00 3.50
823 946 4.479619 GCATTTTGTCTAAGCTGAAGGTG 58.520 43.478 0.00 0.00 0.00 4.00
824 947 4.216257 GCATTTTGTCTAAGCTGAAGGTGA 59.784 41.667 0.00 0.00 0.00 4.02
825 948 5.105997 GCATTTTGTCTAAGCTGAAGGTGAT 60.106 40.000 0.00 0.00 0.00 3.06
826 949 6.094048 GCATTTTGTCTAAGCTGAAGGTGATA 59.906 38.462 0.00 0.00 0.00 2.15
827 950 7.201767 GCATTTTGTCTAAGCTGAAGGTGATAT 60.202 37.037 0.00 0.00 0.00 1.63
828 951 9.330063 CATTTTGTCTAAGCTGAAGGTGATATA 57.670 33.333 0.00 0.00 0.00 0.86
829 952 8.948631 TTTTGTCTAAGCTGAAGGTGATATAG 57.051 34.615 0.00 0.00 0.00 1.31
830 953 7.661536 TTGTCTAAGCTGAAGGTGATATAGT 57.338 36.000 0.00 0.00 0.00 2.12
831 954 7.661536 TGTCTAAGCTGAAGGTGATATAGTT 57.338 36.000 0.00 0.00 0.00 2.24
832 955 7.717568 TGTCTAAGCTGAAGGTGATATAGTTC 58.282 38.462 0.00 0.00 0.00 3.01
833 956 7.561722 TGTCTAAGCTGAAGGTGATATAGTTCT 59.438 37.037 0.00 0.00 0.00 3.01
834 957 8.417884 GTCTAAGCTGAAGGTGATATAGTTCTT 58.582 37.037 0.00 0.00 0.00 2.52
835 958 8.982723 TCTAAGCTGAAGGTGATATAGTTCTTT 58.017 33.333 0.00 0.00 0.00 2.52
836 959 7.856145 AAGCTGAAGGTGATATAGTTCTTTG 57.144 36.000 0.00 0.00 0.00 2.77
837 960 6.951971 AGCTGAAGGTGATATAGTTCTTTGT 58.048 36.000 0.00 0.00 0.00 2.83
838 961 8.079211 AGCTGAAGGTGATATAGTTCTTTGTA 57.921 34.615 0.00 0.00 0.00 2.41
839 962 8.540388 AGCTGAAGGTGATATAGTTCTTTGTAA 58.460 33.333 0.00 0.00 0.00 2.41
840 963 9.162764 GCTGAAGGTGATATAGTTCTTTGTAAA 57.837 33.333 0.00 0.00 0.00 2.01
852 975 7.675962 AGTTCTTTGTAAACATAATACGCCA 57.324 32.000 0.00 0.00 0.00 5.69
853 976 7.524065 AGTTCTTTGTAAACATAATACGCCAC 58.476 34.615 0.00 0.00 0.00 5.01
854 977 7.173562 AGTTCTTTGTAAACATAATACGCCACA 59.826 33.333 0.00 0.00 0.00 4.17
855 978 7.618502 TCTTTGTAAACATAATACGCCACAT 57.381 32.000 0.00 0.00 0.00 3.21
856 979 8.046294 TCTTTGTAAACATAATACGCCACATT 57.954 30.769 0.00 0.00 0.00 2.71
857 980 8.516234 TCTTTGTAAACATAATACGCCACATTT 58.484 29.630 0.00 0.00 0.00 2.32
858 981 9.134734 CTTTGTAAACATAATACGCCACATTTT 57.865 29.630 0.00 0.00 0.00 1.82
859 982 8.454293 TTGTAAACATAATACGCCACATTTTG 57.546 30.769 0.00 0.00 0.00 2.44
860 983 7.594714 TGTAAACATAATACGCCACATTTTGT 58.405 30.769 0.00 0.00 31.54 2.83
861 984 7.751348 TGTAAACATAATACGCCACATTTTGTC 59.249 33.333 0.00 0.00 29.75 3.18
862 985 6.509418 AACATAATACGCCACATTTTGTCT 57.491 33.333 0.00 0.00 29.75 3.41
863 986 7.618502 AACATAATACGCCACATTTTGTCTA 57.381 32.000 0.00 0.00 29.75 2.59
864 987 7.618502 ACATAATACGCCACATTTTGTCTAA 57.381 32.000 0.00 0.00 0.00 2.10
865 988 7.693952 ACATAATACGCCACATTTTGTCTAAG 58.306 34.615 0.00 0.00 0.00 2.18
866 989 2.989422 ACGCCACATTTTGTCTAAGC 57.011 45.000 0.00 0.00 0.00 3.09
867 990 2.504367 ACGCCACATTTTGTCTAAGCT 58.496 42.857 0.00 0.00 0.00 3.74
868 991 2.226437 ACGCCACATTTTGTCTAAGCTG 59.774 45.455 0.00 0.00 0.00 4.24
869 992 2.483877 CGCCACATTTTGTCTAAGCTGA 59.516 45.455 0.00 0.00 0.00 4.26
870 993 3.058293 CGCCACATTTTGTCTAAGCTGAA 60.058 43.478 0.00 0.00 0.00 3.02
871 994 4.479619 GCCACATTTTGTCTAAGCTGAAG 58.520 43.478 0.00 0.00 0.00 3.02
872 995 4.479619 CCACATTTTGTCTAAGCTGAAGC 58.520 43.478 0.00 0.00 42.49 3.86
967 1092 4.637483 AATATGCCACATTTTGTCCGAG 57.363 40.909 0.00 0.00 0.00 4.63
968 1093 0.527565 ATGCCACATTTTGTCCGAGC 59.472 50.000 0.00 0.00 0.00 5.03
970 1095 0.109597 GCCACATTTTGTCCGAGCTG 60.110 55.000 0.00 0.00 0.00 4.24
972 1097 1.879380 CCACATTTTGTCCGAGCTGAA 59.121 47.619 0.00 0.00 0.00 3.02
974 1099 3.300009 CACATTTTGTCCGAGCTGAAAC 58.700 45.455 0.00 0.00 0.00 2.78
975 1100 3.003689 CACATTTTGTCCGAGCTGAAACT 59.996 43.478 0.00 0.00 0.00 2.66
976 1101 3.003689 ACATTTTGTCCGAGCTGAAACTG 59.996 43.478 0.00 0.00 0.00 3.16
977 1102 2.613026 TTTGTCCGAGCTGAAACTGA 57.387 45.000 0.00 0.00 0.00 3.41
978 1103 2.839486 TTGTCCGAGCTGAAACTGAT 57.161 45.000 0.00 0.00 0.00 2.90
979 1104 3.953712 TTGTCCGAGCTGAAACTGATA 57.046 42.857 0.00 0.00 0.00 2.15
980 1105 4.471904 TTGTCCGAGCTGAAACTGATAT 57.528 40.909 0.00 0.00 0.00 1.63
981 1106 5.592104 TTGTCCGAGCTGAAACTGATATA 57.408 39.130 0.00 0.00 0.00 0.86
982 1107 5.188327 TGTCCGAGCTGAAACTGATATAG 57.812 43.478 0.00 0.00 0.00 1.31
983 1108 4.645136 TGTCCGAGCTGAAACTGATATAGT 59.355 41.667 0.00 0.00 42.89 2.12
984 1109 5.216648 GTCCGAGCTGAAACTGATATAGTC 58.783 45.833 0.00 0.00 39.18 2.59
985 1110 4.023963 TCCGAGCTGAAACTGATATAGTCG 60.024 45.833 0.00 0.00 39.18 4.18
1034 1159 7.994425 TTGTCCAAGCTGAAACTGATATAAA 57.006 32.000 0.00 0.00 0.00 1.40
1544 1701 2.994578 CAGAGATTGATAGGCAGCGATG 59.005 50.000 0.00 0.00 0.00 3.84
1545 1702 2.028294 AGAGATTGATAGGCAGCGATGG 60.028 50.000 1.46 0.00 0.00 3.51
1546 1703 1.002888 AGATTGATAGGCAGCGATGGG 59.997 52.381 1.46 0.00 0.00 4.00
1547 1704 0.037303 ATTGATAGGCAGCGATGGGG 59.963 55.000 1.46 0.00 0.00 4.96
1548 1705 1.053835 TTGATAGGCAGCGATGGGGA 61.054 55.000 1.46 0.00 0.00 4.81
1549 1706 1.294780 GATAGGCAGCGATGGGGAG 59.705 63.158 1.46 0.00 0.00 4.30
1550 1707 2.177594 GATAGGCAGCGATGGGGAGG 62.178 65.000 1.46 0.00 0.00 4.30
1556 1713 4.496336 GCGATGGGGAGGCTGCTT 62.496 66.667 5.84 0.00 0.00 3.91
1557 1714 2.273449 CGATGGGGAGGCTGCTTT 59.727 61.111 5.84 0.00 0.00 3.51
1558 1715 1.821332 CGATGGGGAGGCTGCTTTC 60.821 63.158 5.84 0.00 0.00 2.62
1559 1716 1.454663 GATGGGGAGGCTGCTTTCC 60.455 63.158 5.84 0.00 0.00 3.13
1560 1717 2.215451 GATGGGGAGGCTGCTTTCCA 62.215 60.000 11.62 10.36 35.09 3.53
1561 1718 2.044551 GGGGAGGCTGCTTTCCAG 60.045 66.667 11.62 0.00 44.67 3.86
1562 1719 2.606587 GGGGAGGCTGCTTTCCAGA 61.607 63.158 11.62 0.00 44.64 3.86
1563 1720 1.380302 GGGAGGCTGCTTTCCAGAA 59.620 57.895 19.94 0.00 44.64 3.02
1564 1721 0.251341 GGGAGGCTGCTTTCCAGAAA 60.251 55.000 19.94 0.00 44.64 2.52
1587 1776 4.348168 AGTGTTAGTGATGAGGACCTTGTT 59.652 41.667 0.00 0.00 0.00 2.83
1653 1842 4.163458 ACCAGTGAGAAAGAAACCACAGTA 59.837 41.667 0.00 0.00 32.35 2.74
1654 1843 4.752101 CCAGTGAGAAAGAAACCACAGTAG 59.248 45.833 0.00 0.00 32.35 2.57
1668 1857 4.202326 ACCACAGTAGTTACAGTTTCTGGG 60.202 45.833 1.90 0.00 35.51 4.45
1762 1951 2.291209 TGCTTGGATTGTGGTGTCAT 57.709 45.000 0.00 0.00 0.00 3.06
1766 1955 0.776810 TGGATTGTGGTGTCATGGGT 59.223 50.000 0.00 0.00 0.00 4.51
1772 1961 1.094785 GTGGTGTCATGGGTGTATGC 58.905 55.000 0.00 0.00 0.00 3.14
2547 2744 1.836802 GTGGAGAGGGATGAGCTCTTT 59.163 52.381 16.19 1.95 0.00 2.52
2652 2849 2.499693 TGATCAGGGTGAAATGACGCTA 59.500 45.455 0.00 0.00 37.03 4.26
3003 3206 3.344515 AGAAAAACTACCGCCAGGAATC 58.655 45.455 0.00 0.00 41.02 2.52
3012 3215 1.084370 CGCCAGGAATCGTGAAGGTC 61.084 60.000 4.32 0.00 0.00 3.85
3024 3227 2.350197 CGTGAAGGTCGAGAAGTTACGT 60.350 50.000 0.00 0.00 0.00 3.57
3036 3239 4.313282 AGAAGTTACGTCACCTTTTAGCC 58.687 43.478 0.00 0.00 0.00 3.93
3044 3247 2.028748 GTCACCTTTTAGCCGACAGGTA 60.029 50.000 0.00 0.00 37.56 3.08
3103 3306 2.022129 GTCGAGGCGCCGAATATGG 61.022 63.158 23.20 4.28 40.51 2.74
3116 3319 3.064820 CCGAATATGGTTTCCAACTTCCG 59.935 47.826 0.00 0.00 36.95 4.30
3141 3344 1.528586 CTGCAAACTCTTGAGACCGTG 59.471 52.381 4.49 0.00 34.14 4.94
3189 3392 7.458409 TCAGCTGAAGAAAATGAATAAGCTT 57.542 32.000 15.67 3.48 37.65 3.74
3214 3417 4.695455 AGACTGTTTGGGTTGATAACATCG 59.305 41.667 0.00 0.00 31.96 3.84
3363 3566 4.346418 AGGCTCCACAGACTAATCATTAGG 59.654 45.833 9.31 0.00 35.49 2.69
3443 3646 4.727507 TCAAGTATCTGGCTCTGAGTTC 57.272 45.455 6.53 0.20 0.00 3.01
3687 3890 1.336440 CTCTCGGAGCTGAGTATGGTG 59.664 57.143 0.00 0.00 37.28 4.17
3705 3908 4.833811 CCTCGTGGCATCGAATCA 57.166 55.556 11.98 0.00 39.34 2.57
3706 3909 2.598045 CCTCGTGGCATCGAATCAG 58.402 57.895 11.98 2.86 39.34 2.90
3794 3997 2.816087 ACCAGATGCACAACAAGATGAC 59.184 45.455 0.00 0.00 0.00 3.06
3826 4029 1.816537 CTCCGTGCCTAGCTAGCAA 59.183 57.895 18.83 2.30 43.02 3.91
3842 4045 1.005340 GCAAAGAGCGTCAGAGATGG 58.995 55.000 0.00 0.00 0.00 3.51
4034 4251 1.542915 GTCTTGTCATGCCTGCATTGT 59.457 47.619 0.97 0.00 33.90 2.71
4040 4257 2.230992 GTCATGCCTGCATTGTTGGTTA 59.769 45.455 0.97 0.00 33.90 2.85
4184 4404 8.101654 AGACTGATTCTATCGAAGTATGTACC 57.898 38.462 0.00 0.00 30.17 3.34
4205 4425 3.191581 CCTAGTATGTACTCGGCCATCTG 59.808 52.174 2.24 0.00 37.73 2.90
4342 4632 9.521841 TTGGTTACCAAGTATGTTCATAAATCA 57.478 29.630 13.44 0.00 38.75 2.57
4343 4633 9.173021 TGGTTACCAAGTATGTTCATAAATCAG 57.827 33.333 0.00 0.00 0.00 2.90
4344 4634 9.174166 GGTTACCAAGTATGTTCATAAATCAGT 57.826 33.333 0.00 0.00 0.00 3.41
4426 4718 3.724508 AAAATGCACACACGGATTTGA 57.275 38.095 0.00 0.00 37.06 2.69
4439 4734 0.886490 GATTTGATCCCCATCGCGCT 60.886 55.000 5.56 0.00 0.00 5.92
4455 4750 2.607187 GCGCTATTACTCACACACACT 58.393 47.619 0.00 0.00 0.00 3.55
4497 4792 4.067913 GCAAATGGGCGGTGGTGG 62.068 66.667 0.00 0.00 0.00 4.61
4504 4799 3.943691 GGCGGTGGTGGTGTGGTA 61.944 66.667 0.00 0.00 0.00 3.25
4612 4907 0.238289 CAACCACACCGCTGAATCAC 59.762 55.000 0.00 0.00 0.00 3.06
4629 4924 0.109597 CACAGAACCTTTGCATCCGC 60.110 55.000 0.00 0.00 39.24 5.54
4642 4937 1.666189 GCATCCGCTTAGTTCAAGGTC 59.334 52.381 0.00 0.00 34.56 3.85
4683 4980 3.055530 GTGTGTGAGATGGAACTCCTGAT 60.056 47.826 0.00 0.00 36.22 2.90
4714 5012 3.128068 GCCCGATTTCGTTGGTTTTCTAT 59.872 43.478 0.00 0.00 37.74 1.98
4715 5013 4.658071 CCCGATTTCGTTGGTTTTCTATG 58.342 43.478 0.00 0.00 37.74 2.23
4752 5050 2.287368 GCTGGGTTGTTACGTTTTGAGG 60.287 50.000 0.00 0.00 0.00 3.86
4768 5068 7.608761 ACGTTTTGAGGCTGAAATTAGGTTATA 59.391 33.333 0.00 0.00 0.00 0.98
4787 5087 9.849166 AGGTTATATTTTGTGTTAATTCAACCG 57.151 29.630 0.00 0.00 35.23 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.340097 TGTTAGTCGGTGGTACCATAGATG 59.660 45.833 19.72 6.67 38.47 2.90
17 18 4.539726 TGTTAGTCGGTGGTACCATAGAT 58.460 43.478 19.72 12.14 38.47 1.98
18 19 3.966979 TGTTAGTCGGTGGTACCATAGA 58.033 45.455 19.72 17.24 38.47 1.98
19 20 4.931661 ATGTTAGTCGGTGGTACCATAG 57.068 45.455 19.72 15.11 38.47 2.23
20 21 5.693961 TCTATGTTAGTCGGTGGTACCATA 58.306 41.667 19.72 2.58 38.47 2.74
21 22 4.539726 TCTATGTTAGTCGGTGGTACCAT 58.460 43.478 19.72 3.72 38.47 3.55
22 23 3.966979 TCTATGTTAGTCGGTGGTACCA 58.033 45.455 11.60 11.60 38.47 3.25
23 24 4.581824 TCATCTATGTTAGTCGGTGGTACC 59.418 45.833 4.43 4.43 34.05 3.34
24 25 5.762825 TCATCTATGTTAGTCGGTGGTAC 57.237 43.478 0.00 0.00 0.00 3.34
25 26 6.327279 CATCATCTATGTTAGTCGGTGGTA 57.673 41.667 0.00 0.00 0.00 3.25
26 27 5.201713 CATCATCTATGTTAGTCGGTGGT 57.798 43.478 0.00 0.00 0.00 4.16
38 39 6.892310 TTGAGTGACGAAACATCATCTATG 57.108 37.500 0.00 0.00 41.74 2.23
39 40 8.498054 AAATTGAGTGACGAAACATCATCTAT 57.502 30.769 0.00 0.00 0.00 1.98
40 41 7.905604 AAATTGAGTGACGAAACATCATCTA 57.094 32.000 0.00 0.00 0.00 1.98
41 42 6.808008 AAATTGAGTGACGAAACATCATCT 57.192 33.333 0.00 0.00 0.00 2.90
42 43 7.591057 TGAAAAATTGAGTGACGAAACATCATC 59.409 33.333 0.00 0.00 0.00 2.92
43 44 7.424803 TGAAAAATTGAGTGACGAAACATCAT 58.575 30.769 0.00 0.00 0.00 2.45
44 45 6.790282 TGAAAAATTGAGTGACGAAACATCA 58.210 32.000 0.00 0.00 0.00 3.07
45 46 6.129352 GCTGAAAAATTGAGTGACGAAACATC 60.129 38.462 0.00 0.00 0.00 3.06
46 47 5.687285 GCTGAAAAATTGAGTGACGAAACAT 59.313 36.000 0.00 0.00 0.00 2.71
47 48 5.034152 GCTGAAAAATTGAGTGACGAAACA 58.966 37.500 0.00 0.00 0.00 2.83
48 49 4.144731 CGCTGAAAAATTGAGTGACGAAAC 59.855 41.667 0.00 0.00 0.00 2.78
49 50 4.201871 ACGCTGAAAAATTGAGTGACGAAA 60.202 37.500 0.00 0.00 0.00 3.46
50 51 3.311322 ACGCTGAAAAATTGAGTGACGAA 59.689 39.130 0.00 0.00 0.00 3.85
51 52 2.869801 ACGCTGAAAAATTGAGTGACGA 59.130 40.909 0.00 0.00 0.00 4.20
52 53 2.966708 CACGCTGAAAAATTGAGTGACG 59.033 45.455 0.00 0.00 34.31 4.35
53 54 3.952535 ACACGCTGAAAAATTGAGTGAC 58.047 40.909 4.09 0.00 35.89 3.67
54 55 4.095632 TGAACACGCTGAAAAATTGAGTGA 59.904 37.500 4.09 0.00 35.89 3.41
55 56 4.350346 TGAACACGCTGAAAAATTGAGTG 58.650 39.130 0.00 0.00 37.48 3.51
56 57 4.630894 TGAACACGCTGAAAAATTGAGT 57.369 36.364 0.00 0.00 0.00 3.41
57 58 7.379529 ACTTATTGAACACGCTGAAAAATTGAG 59.620 33.333 0.00 0.00 0.00 3.02
58 59 7.167302 CACTTATTGAACACGCTGAAAAATTGA 59.833 33.333 0.00 0.00 0.00 2.57
59 60 7.275785 CACTTATTGAACACGCTGAAAAATTG 58.724 34.615 0.00 0.00 0.00 2.32
60 61 6.420604 CCACTTATTGAACACGCTGAAAAATT 59.579 34.615 0.00 0.00 0.00 1.82
61 62 5.920273 CCACTTATTGAACACGCTGAAAAAT 59.080 36.000 0.00 0.00 0.00 1.82
62 63 5.066634 TCCACTTATTGAACACGCTGAAAAA 59.933 36.000 0.00 0.00 0.00 1.94
63 64 4.576873 TCCACTTATTGAACACGCTGAAAA 59.423 37.500 0.00 0.00 0.00 2.29
64 65 4.130857 TCCACTTATTGAACACGCTGAAA 58.869 39.130 0.00 0.00 0.00 2.69
65 66 3.734463 TCCACTTATTGAACACGCTGAA 58.266 40.909 0.00 0.00 0.00 3.02
66 67 3.394674 TCCACTTATTGAACACGCTGA 57.605 42.857 0.00 0.00 0.00 4.26
67 68 4.685169 AATCCACTTATTGAACACGCTG 57.315 40.909 0.00 0.00 0.00 5.18
68 69 4.615912 GCAAATCCACTTATTGAACACGCT 60.616 41.667 0.00 0.00 0.00 5.07
69 70 3.608073 GCAAATCCACTTATTGAACACGC 59.392 43.478 0.00 0.00 0.00 5.34
70 71 4.853196 CAGCAAATCCACTTATTGAACACG 59.147 41.667 0.00 0.00 0.00 4.49
71 72 5.772521 ACAGCAAATCCACTTATTGAACAC 58.227 37.500 0.00 0.00 0.00 3.32
72 73 5.048083 GGACAGCAAATCCACTTATTGAACA 60.048 40.000 0.00 0.00 36.15 3.18
73 74 5.183904 AGGACAGCAAATCCACTTATTGAAC 59.816 40.000 4.00 0.00 38.86 3.18
74 75 5.183713 CAGGACAGCAAATCCACTTATTGAA 59.816 40.000 4.00 0.00 38.86 2.69
75 76 4.701651 CAGGACAGCAAATCCACTTATTGA 59.298 41.667 4.00 0.00 38.86 2.57
76 77 4.460382 ACAGGACAGCAAATCCACTTATTG 59.540 41.667 4.00 0.00 38.86 1.90
77 78 4.666512 ACAGGACAGCAAATCCACTTATT 58.333 39.130 4.00 0.00 38.86 1.40
78 79 4.307032 ACAGGACAGCAAATCCACTTAT 57.693 40.909 4.00 0.00 38.86 1.73
79 80 3.788227 ACAGGACAGCAAATCCACTTA 57.212 42.857 4.00 0.00 38.86 2.24
80 81 2.664402 ACAGGACAGCAAATCCACTT 57.336 45.000 4.00 0.00 38.86 3.16
81 82 2.371841 TGTACAGGACAGCAAATCCACT 59.628 45.455 0.00 0.00 38.86 4.00
82 83 2.778299 TGTACAGGACAGCAAATCCAC 58.222 47.619 0.00 0.00 38.86 4.02
83 84 3.146066 GTTGTACAGGACAGCAAATCCA 58.854 45.455 0.00 0.00 39.88 3.41
84 85 3.189287 CAGTTGTACAGGACAGCAAATCC 59.811 47.826 1.97 0.00 41.51 3.01
85 86 3.815401 ACAGTTGTACAGGACAGCAAATC 59.185 43.478 1.97 0.00 41.51 2.17
86 87 3.820557 ACAGTTGTACAGGACAGCAAAT 58.179 40.909 1.97 0.00 41.51 2.32
87 88 3.275617 ACAGTTGTACAGGACAGCAAA 57.724 42.857 1.97 0.00 41.51 3.68
88 89 4.141801 ACTTACAGTTGTACAGGACAGCAA 60.142 41.667 1.97 0.00 41.51 3.91
89 90 3.386726 ACTTACAGTTGTACAGGACAGCA 59.613 43.478 1.97 0.00 41.51 4.41
90 91 3.991367 ACTTACAGTTGTACAGGACAGC 58.009 45.455 0.00 0.00 39.88 4.40
132 133 9.273016 CCAAACACACTAGGGTATATAGAAATG 57.727 37.037 0.00 0.00 0.00 2.32
133 134 8.437575 CCCAAACACACTAGGGTATATAGAAAT 58.562 37.037 0.00 0.00 36.52 2.17
134 135 7.147444 CCCCAAACACACTAGGGTATATAGAAA 60.147 40.741 0.00 0.00 39.76 2.52
135 136 6.328148 CCCCAAACACACTAGGGTATATAGAA 59.672 42.308 0.00 0.00 39.76 2.10
136 137 5.842328 CCCCAAACACACTAGGGTATATAGA 59.158 44.000 0.00 0.00 39.76 1.98
137 138 5.512576 GCCCCAAACACACTAGGGTATATAG 60.513 48.000 0.00 0.00 40.14 1.31
138 139 4.348754 GCCCCAAACACACTAGGGTATATA 59.651 45.833 0.00 0.00 40.14 0.86
146 147 0.110486 ACCAGCCCCAAACACACTAG 59.890 55.000 0.00 0.00 0.00 2.57
148 149 1.455587 CACCAGCCCCAAACACACT 60.456 57.895 0.00 0.00 0.00 3.55
185 186 5.182001 GCCTTTCATCTGTCTAACACACATT 59.818 40.000 0.00 0.00 0.00 2.71
194 195 3.713003 TCCTCTGCCTTTCATCTGTCTA 58.287 45.455 0.00 0.00 0.00 2.59
195 196 2.544721 TCCTCTGCCTTTCATCTGTCT 58.455 47.619 0.00 0.00 0.00 3.41
212 213 0.682209 GGTGATGCAGCCAACATCCT 60.682 55.000 0.00 0.00 42.68 3.24
239 240 3.057033 CCTGGCTTCCATTTCACTGAAAG 60.057 47.826 9.97 3.07 34.92 2.62
247 248 0.323725 TGGCTCCTGGCTTCCATTTC 60.324 55.000 0.00 0.00 41.46 2.17
251 259 2.679092 CATGGCTCCTGGCTTCCA 59.321 61.111 4.35 4.35 41.46 3.53
292 305 3.522553 AGGAAGACAAGCGCTATTGTAC 58.477 45.455 12.05 6.94 43.32 2.90
306 319 4.035675 GCTGCCAATAACATGTAGGAAGAC 59.964 45.833 15.24 6.18 0.00 3.01
325 338 0.108945 GGTTTGAGAATGGCTGCTGC 60.109 55.000 7.10 7.10 38.76 5.25
326 339 0.529378 GGGTTTGAGAATGGCTGCTG 59.471 55.000 0.00 0.00 0.00 4.41
327 340 0.112995 TGGGTTTGAGAATGGCTGCT 59.887 50.000 0.00 0.00 0.00 4.24
330 349 4.467769 CATAGATGGGTTTGAGAATGGCT 58.532 43.478 0.00 0.00 0.00 4.75
340 359 3.951563 TGCTTAGGCATAGATGGGTTT 57.048 42.857 0.00 0.00 44.28 3.27
364 383 5.980116 GCTATATTAGTGACTGGTGTGTCAG 59.020 44.000 0.00 0.00 46.09 3.51
365 384 5.656859 AGCTATATTAGTGACTGGTGTGTCA 59.343 40.000 0.00 0.00 43.72 3.58
367 386 5.656859 TGAGCTATATTAGTGACTGGTGTGT 59.343 40.000 0.00 0.00 0.00 3.72
368 387 6.149129 TGAGCTATATTAGTGACTGGTGTG 57.851 41.667 0.00 0.00 0.00 3.82
369 388 6.325028 ACATGAGCTATATTAGTGACTGGTGT 59.675 38.462 0.00 0.00 0.00 4.16
372 391 7.928167 TGAAACATGAGCTATATTAGTGACTGG 59.072 37.037 0.00 0.00 0.00 4.00
373 392 8.877808 TGAAACATGAGCTATATTAGTGACTG 57.122 34.615 0.00 0.00 0.00 3.51
374 393 9.703892 GATGAAACATGAGCTATATTAGTGACT 57.296 33.333 0.00 0.00 0.00 3.41
375 394 9.481340 TGATGAAACATGAGCTATATTAGTGAC 57.519 33.333 0.00 0.00 0.00 3.67
376 395 9.481340 GTGATGAAACATGAGCTATATTAGTGA 57.519 33.333 0.00 0.00 0.00 3.41
377 396 9.486497 AGTGATGAAACATGAGCTATATTAGTG 57.514 33.333 0.00 0.00 0.00 2.74
388 407 8.806177 TGAAAAATTGAGTGATGAAACATGAG 57.194 30.769 0.00 0.00 0.00 2.90
390 409 8.583810 ACTGAAAAATTGAGTGATGAAACATG 57.416 30.769 0.00 0.00 0.00 3.21
405 424 8.934023 TCCACTTGATAAGGTACTGAAAAATT 57.066 30.769 0.00 0.00 40.86 1.82
436 455 4.692625 CACCTTACAGTTCTCAAGGACATG 59.307 45.833 6.81 0.00 41.18 3.21
447 466 2.162408 GCATGAAGCCACCTTACAGTTC 59.838 50.000 0.00 0.00 37.23 3.01
464 483 2.666619 GCGACACAAAAAGGAGAGCATG 60.667 50.000 0.00 0.00 0.00 4.06
468 487 2.032549 CACAGCGACACAAAAAGGAGAG 60.033 50.000 0.00 0.00 0.00 3.20
472 491 1.400142 TCACACAGCGACACAAAAAGG 59.600 47.619 0.00 0.00 0.00 3.11
473 492 2.823196 TCACACAGCGACACAAAAAG 57.177 45.000 0.00 0.00 0.00 2.27
480 499 0.249826 TTCTGCATCACACAGCGACA 60.250 50.000 0.00 0.00 35.04 4.35
481 500 0.867746 TTTCTGCATCACACAGCGAC 59.132 50.000 0.00 0.00 35.04 5.19
483 502 2.313234 CTTTTTCTGCATCACACAGCG 58.687 47.619 0.00 0.00 35.04 5.18
495 514 8.408601 ACACTATGGCATATAAAGCTTTTTCTG 58.591 33.333 18.47 13.15 0.00 3.02
502 521 6.039717 CCAAACACACTATGGCATATAAAGCT 59.960 38.462 7.81 0.00 0.00 3.74
503 522 6.183360 ACCAAACACACTATGGCATATAAAGC 60.183 38.462 7.81 0.00 37.77 3.51
504 523 7.195646 CACCAAACACACTATGGCATATAAAG 58.804 38.462 7.81 0.12 37.77 1.85
512 534 1.247567 AGCACCAAACACACTATGGC 58.752 50.000 0.00 0.00 37.77 4.40
540 562 3.066064 ACAGACATACAAAACTGCGCAAA 59.934 39.130 13.05 0.00 34.25 3.68
547 569 4.085357 TGCCTCACAGACATACAAAACT 57.915 40.909 0.00 0.00 0.00 2.66
566 588 4.778143 AACATCCCCGCCGTCTGC 62.778 66.667 0.00 0.00 0.00 4.26
568 590 4.096003 CCAACATCCCCGCCGTCT 62.096 66.667 0.00 0.00 0.00 4.18
620 642 1.959282 GGAGCATGGATCCCACATTTC 59.041 52.381 9.90 0.00 35.80 2.17
647 669 9.604626 GCTGCATGATTATATTACTCTTTTGAC 57.395 33.333 0.00 0.00 0.00 3.18
654 676 5.726138 GCGCTGCTGCATGATTATATTACTC 60.726 44.000 16.29 0.00 39.64 2.59
656 678 4.093998 AGCGCTGCTGCATGATTATATTAC 59.906 41.667 10.39 0.00 37.57 1.89
659 681 2.708051 AGCGCTGCTGCATGATTATAT 58.292 42.857 10.39 0.00 37.57 0.86
666 788 2.196382 AAGACAAGCGCTGCTGCATG 62.196 55.000 12.58 6.87 39.62 4.06
669 791 2.175322 GAAGACAAGCGCTGCTGC 59.825 61.111 12.58 3.72 39.62 5.25
672 794 1.439365 CAACGAAGACAAGCGCTGC 60.439 57.895 12.58 3.44 0.00 5.25
673 795 1.136611 GTACAACGAAGACAAGCGCTG 60.137 52.381 12.58 8.13 0.00 5.18
674 796 1.137513 GTACAACGAAGACAAGCGCT 58.862 50.000 2.64 2.64 0.00 5.92
686 808 3.331150 TCTGCCCATAACAAGTACAACG 58.669 45.455 0.00 0.00 0.00 4.10
687 809 5.001232 TCTTCTGCCCATAACAAGTACAAC 58.999 41.667 0.00 0.00 0.00 3.32
688 810 5.235850 TCTTCTGCCCATAACAAGTACAA 57.764 39.130 0.00 0.00 0.00 2.41
694 816 6.039717 GCTTAATCATCTTCTGCCCATAACAA 59.960 38.462 0.00 0.00 0.00 2.83
735 858 5.460748 GCTGCTTGGTGTTTAAAACGTTTAT 59.539 36.000 15.03 7.39 0.00 1.40
744 867 4.620332 GCCATATTGCTGCTTGGTGTTTAA 60.620 41.667 0.00 0.00 0.00 1.52
749 872 0.103572 GGCCATATTGCTGCTTGGTG 59.896 55.000 0.00 0.00 0.00 4.17
757 880 1.656818 GCACACACGGCCATATTGCT 61.657 55.000 2.24 0.00 0.00 3.91
775 898 5.912955 GCGTATTATGTTTACAAAGGATGGC 59.087 40.000 0.00 0.00 0.00 4.40
776 899 6.435428 GGCGTATTATGTTTACAAAGGATGG 58.565 40.000 0.00 0.00 0.00 3.51
777 900 6.133392 CGGCGTATTATGTTTACAAAGGATG 58.867 40.000 0.00 0.00 0.00 3.51
779 902 4.034279 GCGGCGTATTATGTTTACAAAGGA 59.966 41.667 9.37 0.00 0.00 3.36
780 903 4.201832 TGCGGCGTATTATGTTTACAAAGG 60.202 41.667 9.37 0.00 0.00 3.11
781 904 4.899516 TGCGGCGTATTATGTTTACAAAG 58.100 39.130 9.37 0.00 0.00 2.77
782 905 4.941325 TGCGGCGTATTATGTTTACAAA 57.059 36.364 9.37 0.00 0.00 2.83
783 906 5.487153 AATGCGGCGTATTATGTTTACAA 57.513 34.783 21.50 0.00 0.00 2.41
784 907 5.487153 AAATGCGGCGTATTATGTTTACA 57.513 34.783 22.96 0.53 0.00 2.41
785 908 5.740099 ACAAAATGCGGCGTATTATGTTTAC 59.260 36.000 22.96 0.00 0.00 2.01
786 909 5.881447 ACAAAATGCGGCGTATTATGTTTA 58.119 33.333 22.96 0.00 0.00 2.01
787 910 4.739195 ACAAAATGCGGCGTATTATGTTT 58.261 34.783 22.96 11.14 0.00 2.83
788 911 4.095782 AGACAAAATGCGGCGTATTATGTT 59.904 37.500 22.96 11.49 0.00 2.71
789 912 3.625764 AGACAAAATGCGGCGTATTATGT 59.374 39.130 22.96 15.33 0.00 2.29
790 913 4.209452 AGACAAAATGCGGCGTATTATG 57.791 40.909 22.96 12.32 0.00 1.90
791 914 5.560183 GCTTAGACAAAATGCGGCGTATTAT 60.560 40.000 22.96 12.02 0.00 1.28
792 915 4.260456 GCTTAGACAAAATGCGGCGTATTA 60.260 41.667 22.96 4.09 0.00 0.98
793 916 3.486875 GCTTAGACAAAATGCGGCGTATT 60.487 43.478 17.52 17.52 0.00 1.89
794 917 2.031683 GCTTAGACAAAATGCGGCGTAT 59.968 45.455 9.37 6.74 0.00 3.06
795 918 1.395608 GCTTAGACAAAATGCGGCGTA 59.604 47.619 9.37 3.65 0.00 4.42
796 919 0.168128 GCTTAGACAAAATGCGGCGT 59.832 50.000 9.37 0.00 0.00 5.68
797 920 0.447801 AGCTTAGACAAAATGCGGCG 59.552 50.000 0.51 0.51 0.00 6.46
798 921 1.468520 TCAGCTTAGACAAAATGCGGC 59.531 47.619 0.00 0.00 0.00 6.53
799 922 3.426695 CCTTCAGCTTAGACAAAATGCGG 60.427 47.826 0.00 0.00 0.00 5.69
800 923 3.189287 ACCTTCAGCTTAGACAAAATGCG 59.811 43.478 0.00 0.00 0.00 4.73
801 924 4.216257 TCACCTTCAGCTTAGACAAAATGC 59.784 41.667 0.00 0.00 0.00 3.56
802 925 5.947228 TCACCTTCAGCTTAGACAAAATG 57.053 39.130 0.00 0.00 0.00 2.32
803 926 9.553064 CTATATCACCTTCAGCTTAGACAAAAT 57.447 33.333 0.00 0.00 0.00 1.82
804 927 8.540388 ACTATATCACCTTCAGCTTAGACAAAA 58.460 33.333 0.00 0.00 0.00 2.44
805 928 8.079211 ACTATATCACCTTCAGCTTAGACAAA 57.921 34.615 0.00 0.00 0.00 2.83
806 929 7.661536 ACTATATCACCTTCAGCTTAGACAA 57.338 36.000 0.00 0.00 0.00 3.18
807 930 7.561722 AGAACTATATCACCTTCAGCTTAGACA 59.438 37.037 0.00 0.00 0.00 3.41
808 931 7.947282 AGAACTATATCACCTTCAGCTTAGAC 58.053 38.462 0.00 0.00 0.00 2.59
809 932 8.540507 AAGAACTATATCACCTTCAGCTTAGA 57.459 34.615 0.00 0.00 0.00 2.10
810 933 9.039870 CAAAGAACTATATCACCTTCAGCTTAG 57.960 37.037 0.00 0.00 0.00 2.18
811 934 8.540388 ACAAAGAACTATATCACCTTCAGCTTA 58.460 33.333 0.00 0.00 0.00 3.09
812 935 7.398024 ACAAAGAACTATATCACCTTCAGCTT 58.602 34.615 0.00 0.00 0.00 3.74
813 936 6.951971 ACAAAGAACTATATCACCTTCAGCT 58.048 36.000 0.00 0.00 0.00 4.24
814 937 8.718102 TTACAAAGAACTATATCACCTTCAGC 57.282 34.615 0.00 0.00 0.00 4.26
826 949 9.386010 TGGCGTATTATGTTTACAAAGAACTAT 57.614 29.630 0.00 0.00 0.00 2.12
827 950 8.658609 GTGGCGTATTATGTTTACAAAGAACTA 58.341 33.333 0.00 0.00 0.00 2.24
828 951 7.173562 TGTGGCGTATTATGTTTACAAAGAACT 59.826 33.333 0.00 0.00 0.00 3.01
829 952 7.299586 TGTGGCGTATTATGTTTACAAAGAAC 58.700 34.615 0.00 0.00 0.00 3.01
830 953 7.436430 TGTGGCGTATTATGTTTACAAAGAA 57.564 32.000 0.00 0.00 0.00 2.52
831 954 7.618502 ATGTGGCGTATTATGTTTACAAAGA 57.381 32.000 0.00 0.00 0.00 2.52
832 955 8.682128 AAATGTGGCGTATTATGTTTACAAAG 57.318 30.769 0.00 0.00 0.00 2.77
833 956 8.916654 CAAAATGTGGCGTATTATGTTTACAAA 58.083 29.630 0.00 0.00 0.00 2.83
834 957 8.082852 ACAAAATGTGGCGTATTATGTTTACAA 58.917 29.630 0.00 0.00 0.00 2.41
835 958 7.594714 ACAAAATGTGGCGTATTATGTTTACA 58.405 30.769 0.00 0.00 0.00 2.41
836 959 7.966204 AGACAAAATGTGGCGTATTATGTTTAC 59.034 33.333 0.00 0.00 41.91 2.01
837 960 8.046294 AGACAAAATGTGGCGTATTATGTTTA 57.954 30.769 0.00 0.00 41.91 2.01
838 961 6.919721 AGACAAAATGTGGCGTATTATGTTT 58.080 32.000 0.00 0.00 41.91 2.83
839 962 6.509418 AGACAAAATGTGGCGTATTATGTT 57.491 33.333 0.00 0.00 41.91 2.71
840 963 7.618502 TTAGACAAAATGTGGCGTATTATGT 57.381 32.000 0.00 0.00 41.91 2.29
841 964 6.632834 GCTTAGACAAAATGTGGCGTATTATG 59.367 38.462 0.00 0.00 41.91 1.90
842 965 6.542370 AGCTTAGACAAAATGTGGCGTATTAT 59.458 34.615 0.00 0.00 41.91 1.28
843 966 5.878116 AGCTTAGACAAAATGTGGCGTATTA 59.122 36.000 0.00 0.00 41.91 0.98
844 967 4.700213 AGCTTAGACAAAATGTGGCGTATT 59.300 37.500 0.00 0.00 41.91 1.89
845 968 4.094887 CAGCTTAGACAAAATGTGGCGTAT 59.905 41.667 0.00 0.00 41.91 3.06
846 969 3.435327 CAGCTTAGACAAAATGTGGCGTA 59.565 43.478 0.00 0.00 41.91 4.42
847 970 2.226437 CAGCTTAGACAAAATGTGGCGT 59.774 45.455 0.00 0.00 41.91 5.68
848 971 2.483877 TCAGCTTAGACAAAATGTGGCG 59.516 45.455 0.00 0.00 41.91 5.69
849 972 4.479619 CTTCAGCTTAGACAAAATGTGGC 58.520 43.478 0.00 0.00 34.17 5.01
850 973 4.479619 GCTTCAGCTTAGACAAAATGTGG 58.520 43.478 0.00 0.00 38.21 4.17
865 988 9.712305 TTTATAAAGGAGTATATCAGCTTCAGC 57.288 33.333 0.00 0.00 42.49 4.26
879 1002 9.860650 TGTGGCATATTATGTTTATAAAGGAGT 57.139 29.630 0.00 0.00 32.80 3.85
938 1061 9.030301 GGACAAAATGTGGCATATTATGTTTAC 57.970 33.333 10.00 3.66 36.72 2.01
953 1076 3.003689 AGTTTCAGCTCGGACAAAATGTG 59.996 43.478 0.00 0.00 0.00 3.21
961 1086 5.189659 ACTATATCAGTTTCAGCTCGGAC 57.810 43.478 0.00 0.00 31.59 4.79
994 1119 6.762661 GCTTGGACAAAATGTGGCATATTATT 59.237 34.615 10.00 4.61 36.72 1.40
1034 1159 3.878160 AAAACACCAACACGGAACAAT 57.122 38.095 0.00 0.00 38.63 2.71
1083 1208 2.554032 CCCAATCTTTGAAACAGCGAGT 59.446 45.455 0.00 0.00 0.00 4.18
1500 1625 3.370840 TGCTCATTTCTAATGGGCTGT 57.629 42.857 21.08 0.00 45.35 4.40
1503 1628 2.363038 TGCATGCTCATTTCTAATGGGC 59.637 45.455 20.33 15.52 45.35 5.36
1544 1701 2.044551 CTGGAAAGCAGCCTCCCC 60.045 66.667 8.39 0.00 0.00 4.81
1545 1702 0.251341 TTTCTGGAAAGCAGCCTCCC 60.251 55.000 8.39 0.00 0.00 4.30
1546 1703 1.172175 CTTTCTGGAAAGCAGCCTCC 58.828 55.000 9.68 4.41 40.94 4.30
1555 1712 5.997746 CCTCATCACTAACACTTTCTGGAAA 59.002 40.000 0.00 0.00 0.00 3.13
1556 1713 5.306937 TCCTCATCACTAACACTTTCTGGAA 59.693 40.000 0.00 0.00 0.00 3.53
1557 1714 4.838423 TCCTCATCACTAACACTTTCTGGA 59.162 41.667 0.00 0.00 0.00 3.86
1558 1715 4.932200 GTCCTCATCACTAACACTTTCTGG 59.068 45.833 0.00 0.00 0.00 3.86
1559 1716 4.932200 GGTCCTCATCACTAACACTTTCTG 59.068 45.833 0.00 0.00 0.00 3.02
1560 1717 4.841246 AGGTCCTCATCACTAACACTTTCT 59.159 41.667 0.00 0.00 0.00 2.52
1561 1718 5.153950 AGGTCCTCATCACTAACACTTTC 57.846 43.478 0.00 0.00 0.00 2.62
1562 1719 5.163195 ACAAGGTCCTCATCACTAACACTTT 60.163 40.000 0.00 0.00 0.00 2.66
1563 1720 4.348168 ACAAGGTCCTCATCACTAACACTT 59.652 41.667 0.00 0.00 0.00 3.16
1564 1721 3.904339 ACAAGGTCCTCATCACTAACACT 59.096 43.478 0.00 0.00 0.00 3.55
1565 1722 4.273148 ACAAGGTCCTCATCACTAACAC 57.727 45.455 0.00 0.00 0.00 3.32
1566 1723 4.504864 CCAACAAGGTCCTCATCACTAACA 60.505 45.833 0.00 0.00 0.00 2.41
1567 1724 4.003648 CCAACAAGGTCCTCATCACTAAC 58.996 47.826 0.00 0.00 0.00 2.34
1568 1725 3.009033 CCCAACAAGGTCCTCATCACTAA 59.991 47.826 0.00 0.00 34.66 2.24
1569 1726 2.571653 CCCAACAAGGTCCTCATCACTA 59.428 50.000 0.00 0.00 34.66 2.74
1570 1727 1.352352 CCCAACAAGGTCCTCATCACT 59.648 52.381 0.00 0.00 34.66 3.41
1571 1728 1.351017 TCCCAACAAGGTCCTCATCAC 59.649 52.381 0.00 0.00 34.66 3.06
1572 1729 1.741028 TCCCAACAAGGTCCTCATCA 58.259 50.000 0.00 0.00 34.66 3.07
1573 1730 3.019564 CAATCCCAACAAGGTCCTCATC 58.980 50.000 0.00 0.00 34.66 2.92
1574 1731 2.649312 TCAATCCCAACAAGGTCCTCAT 59.351 45.455 0.00 0.00 34.66 2.90
1575 1732 2.061848 TCAATCCCAACAAGGTCCTCA 58.938 47.619 0.00 0.00 34.66 3.86
1587 1776 3.091545 GCTCCTGTTTTCATCAATCCCA 58.908 45.455 0.00 0.00 0.00 4.37
1634 1823 6.759827 TGTAACTACTGTGGTTTCTTTCTCAC 59.240 38.462 14.78 5.31 0.00 3.51
1653 1842 3.256704 TCCCATCCCAGAAACTGTAACT 58.743 45.455 0.00 0.00 0.00 2.24
1654 1843 3.610911 CTCCCATCCCAGAAACTGTAAC 58.389 50.000 0.00 0.00 0.00 2.50
1668 1857 0.041090 TTTTCCCCAAGCCTCCCATC 59.959 55.000 0.00 0.00 0.00 3.51
1762 1951 4.568072 AATCAACTACAGCATACACCCA 57.432 40.909 0.00 0.00 0.00 4.51
1766 1955 5.244755 TCAGCAAATCAACTACAGCATACA 58.755 37.500 0.00 0.00 0.00 2.29
1772 1961 4.088823 GCCTTCAGCAAATCAACTACAG 57.911 45.455 0.00 0.00 42.97 2.74
2547 2744 9.131791 TCATGCATCTTACATGTACTAACTCTA 57.868 33.333 4.68 0.00 44.26 2.43
2652 2849 4.828829 ACCGACGAACTTCTTTATCCATT 58.171 39.130 0.00 0.00 0.00 3.16
2796 2999 3.641906 CGGTAAGGTAGTTGGATCCAGAT 59.358 47.826 15.53 10.17 0.00 2.90
2909 3112 2.481952 GTGTCTGGCAATGACTGAACTC 59.518 50.000 0.00 0.00 35.63 3.01
3003 3206 2.240040 CGTAACTTCTCGACCTTCACG 58.760 52.381 0.00 0.00 0.00 4.35
3012 3215 4.089636 GCTAAAAGGTGACGTAACTTCTCG 59.910 45.833 2.34 0.00 0.00 4.04
3024 3227 1.053424 ACCTGTCGGCTAAAAGGTGA 58.947 50.000 0.00 0.00 41.52 4.02
3036 3239 3.379240 CTTCTCATCAGCATACCTGTCG 58.621 50.000 0.00 0.00 42.38 4.35
3044 3247 3.345508 TTGTCTGCTTCTCATCAGCAT 57.654 42.857 0.00 0.00 46.19 3.79
3116 3319 2.550180 GTCTCAAGAGTTTGCAGTTCCC 59.450 50.000 0.00 0.00 34.21 3.97
3141 3344 1.214589 CAAGTCCTTGCTGGCATGC 59.785 57.895 9.90 9.90 33.45 4.06
3189 3392 5.042463 TGTTATCAACCCAAACAGTCTGA 57.958 39.130 6.91 0.00 0.00 3.27
3214 3417 4.701765 AGGTCATCACAGTTAGATGCATC 58.298 43.478 19.37 19.37 41.98 3.91
3384 3587 4.096984 CCCTGAAATATTGGACACTTGAGC 59.903 45.833 0.00 0.00 0.00 4.26
3443 3646 2.749076 TCTTCATTCCCAAGATTGCACG 59.251 45.455 0.00 0.00 0.00 5.34
3600 3803 6.258230 TCAATCTCCAGTTGCTTTACATTG 57.742 37.500 0.00 0.00 0.00 2.82
3606 3809 3.560882 CCTCCTCAATCTCCAGTTGCTTT 60.561 47.826 0.00 0.00 0.00 3.51
3705 3908 2.238395 GAGCTTCTTCAGGGATCCAACT 59.762 50.000 15.23 0.00 0.00 3.16
3706 3909 2.238395 AGAGCTTCTTCAGGGATCCAAC 59.762 50.000 15.23 0.00 0.00 3.77
3794 3997 2.169789 CGGAGCTCTGGAACATGCG 61.170 63.158 15.27 1.60 41.29 4.73
3826 4029 2.136298 TCTCCATCTCTGACGCTCTT 57.864 50.000 0.00 0.00 0.00 2.85
3833 4036 5.684291 GCTTCATCATGTTCTCCATCTCTGA 60.684 44.000 0.00 0.00 0.00 3.27
3986 4203 5.306532 TGCAAAGAAATCAAGAGCTGATC 57.693 39.130 0.00 0.00 44.43 2.92
4040 4257 8.458843 CCGTGTTTCAGGAATTATTACAGAAAT 58.541 33.333 10.23 0.00 0.00 2.17
4184 4404 3.821600 ACAGATGGCCGAGTACATACTAG 59.178 47.826 0.00 0.00 36.50 2.57
4205 4425 7.678947 ACATTGCAATATATAGGAAGCAGAC 57.321 36.000 12.53 0.00 33.14 3.51
4342 4632 5.262009 TGTATGCCAGTTCAGTACTCTACT 58.738 41.667 0.00 0.00 40.28 2.57
4343 4633 5.578005 TGTATGCCAGTTCAGTACTCTAC 57.422 43.478 0.00 0.00 33.85 2.59
4344 4634 9.232473 CTATATGTATGCCAGTTCAGTACTCTA 57.768 37.037 0.00 0.00 33.85 2.43
4345 4635 6.985653 ATATGTATGCCAGTTCAGTACTCT 57.014 37.500 0.00 0.00 33.85 3.24
4346 4636 6.809196 GCTATATGTATGCCAGTTCAGTACTC 59.191 42.308 0.00 0.00 33.85 2.59
4420 4712 0.886490 AGCGCGATGGGGATCAAATC 60.886 55.000 12.10 0.00 0.00 2.17
4421 4713 0.396435 TAGCGCGATGGGGATCAAAT 59.604 50.000 12.10 0.00 0.00 2.32
4422 4714 0.396435 ATAGCGCGATGGGGATCAAA 59.604 50.000 12.10 0.00 0.00 2.69
4423 4715 0.396435 AATAGCGCGATGGGGATCAA 59.604 50.000 12.10 0.00 0.00 2.57
4425 4717 1.204941 AGTAATAGCGCGATGGGGATC 59.795 52.381 12.10 0.00 0.00 3.36
4426 4718 1.204941 GAGTAATAGCGCGATGGGGAT 59.795 52.381 12.10 0.00 0.00 3.85
4439 4734 4.600692 ACAGCAGTGTGTGTGAGTAATA 57.399 40.909 0.00 0.00 34.75 0.98
4455 4750 5.648092 GGCTCTATTTTTCCTTTCTACAGCA 59.352 40.000 0.00 0.00 0.00 4.41
4497 4792 1.294659 GCACTGCTGCTCTACCACAC 61.295 60.000 0.00 0.00 40.63 3.82
4516 4811 2.033194 GTTGCTCCGACGGGGAAAG 61.033 63.158 20.60 6.98 46.61 2.62
4522 4817 0.387622 TTCGTTAGTTGCTCCGACGG 60.388 55.000 7.84 7.84 34.72 4.79
4612 4907 0.883833 AAGCGGATGCAAAGGTTCTG 59.116 50.000 0.00 0.00 46.23 3.02
4629 4924 4.950050 ACAGTCACTGACCTTGAACTAAG 58.050 43.478 13.14 0.00 35.18 2.18
4642 4937 3.223953 CACGAACGTAGTACAGTCACTG 58.776 50.000 2.22 2.22 45.00 3.66
4683 4980 1.760613 ACGAAATCGGGCAGGAGATAA 59.239 47.619 7.81 0.00 44.95 1.75
4714 5012 2.485124 CCAGCCTGCAAACCAAATTTCA 60.485 45.455 0.00 0.00 0.00 2.69
4715 5013 2.145536 CCAGCCTGCAAACCAAATTTC 58.854 47.619 0.00 0.00 0.00 2.17
4768 5068 6.144175 CGTACCGGTTGAATTAACACAAAAT 58.856 36.000 15.04 0.00 41.18 1.82
4787 5087 2.230750 AGTACTCAGAACCTTGCGTACC 59.769 50.000 0.00 0.00 39.09 3.34
4794 5094 3.974642 AGAACCCAAGTACTCAGAACCTT 59.025 43.478 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.