Multiple sequence alignment - TraesCS1D01G025600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G025600 chr1D 100.000 3114 0 0 1 3114 10550302 10547189 0.000000e+00 5751
1 TraesCS1D01G025600 chr1D 86.495 933 92 13 585 1488 10457934 10457007 0.000000e+00 994
2 TraesCS1D01G025600 chr1D 94.253 87 5 0 2104 2190 10456995 10456909 1.950000e-27 134
3 TraesCS1D01G025600 chr1A 96.525 1410 45 4 451 1860 12186413 12185008 0.000000e+00 2329
4 TraesCS1D01G025600 chr1A 95.439 285 13 0 1906 2190 12185007 12184723 3.660000e-124 455
5 TraesCS1D01G025600 chr6A 90.147 1634 129 7 585 2187 206345654 206347286 0.000000e+00 2097
6 TraesCS1D01G025600 chr6D 90.024 1634 131 7 585 2187 153856477 153858109 0.000000e+00 2085
7 TraesCS1D01G025600 chr6D 85.794 901 122 6 2210 3107 411017031 411017928 0.000000e+00 950
8 TraesCS1D01G025600 chrUn 85.012 854 115 12 2268 3114 303542863 303543710 0.000000e+00 856
9 TraesCS1D01G025600 chr5D 90.260 616 54 3 2505 3114 16121527 16122142 0.000000e+00 800
10 TraesCS1D01G025600 chr3D 82.353 935 122 30 2185 3114 133266625 133267521 0.000000e+00 773
11 TraesCS1D01G025600 chr7D 81.398 930 167 6 2185 3110 56979419 56980346 0.000000e+00 754
12 TraesCS1D01G025600 chr2D 81.263 934 169 6 2185 3114 447323374 447324305 0.000000e+00 750
13 TraesCS1D01G025600 chr2D 85.569 589 53 14 1341 1915 450398973 450399543 3.460000e-164 588
14 TraesCS1D01G025600 chr2D 88.115 244 24 4 1697 1939 498869067 498868828 5.080000e-73 285
15 TraesCS1D01G025600 chr2D 87.629 97 12 0 139 235 43094892 43094988 2.540000e-21 113
16 TraesCS1D01G025600 chr2D 87.629 97 11 1 139 235 43415392 43415487 9.130000e-21 111
17 TraesCS1D01G025600 chr5B 81.481 891 157 8 2225 3110 160105052 160104165 0.000000e+00 725
18 TraesCS1D01G025600 chr5A 85.569 589 48 18 1342 1915 220899669 220899103 1.610000e-162 582
19 TraesCS1D01G025600 chr3B 84.772 591 63 15 1353 1939 27506509 27505942 4.510000e-158 568
20 TraesCS1D01G025600 chr3B 73.482 939 234 15 2185 3114 22647013 22646081 1.070000e-89 340
21 TraesCS1D01G025600 chr6B 75.399 939 215 15 2185 3114 52812297 52811366 1.030000e-119 440
22 TraesCS1D01G025600 chr2B 84.795 342 41 10 1341 1675 17859799 17860136 1.790000e-87 333
23 TraesCS1D01G025600 chr2B 88.660 97 11 0 139 235 68253435 68253531 5.460000e-23 119
24 TraesCS1D01G025600 chr1B 73.548 930 221 24 2190 3105 624993428 624992510 6.440000e-87 331
25 TraesCS1D01G025600 chr2A 88.660 97 10 1 139 235 45144822 45144917 1.960000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G025600 chr1D 10547189 10550302 3113 True 5751 5751 100.000 1 3114 1 chr1D.!!$R1 3113
1 TraesCS1D01G025600 chr1D 10456909 10457934 1025 True 564 994 90.374 585 2190 2 chr1D.!!$R2 1605
2 TraesCS1D01G025600 chr1A 12184723 12186413 1690 True 1392 2329 95.982 451 2190 2 chr1A.!!$R1 1739
3 TraesCS1D01G025600 chr6A 206345654 206347286 1632 False 2097 2097 90.147 585 2187 1 chr6A.!!$F1 1602
4 TraesCS1D01G025600 chr6D 153856477 153858109 1632 False 2085 2085 90.024 585 2187 1 chr6D.!!$F1 1602
5 TraesCS1D01G025600 chr6D 411017031 411017928 897 False 950 950 85.794 2210 3107 1 chr6D.!!$F2 897
6 TraesCS1D01G025600 chrUn 303542863 303543710 847 False 856 856 85.012 2268 3114 1 chrUn.!!$F1 846
7 TraesCS1D01G025600 chr5D 16121527 16122142 615 False 800 800 90.260 2505 3114 1 chr5D.!!$F1 609
8 TraesCS1D01G025600 chr3D 133266625 133267521 896 False 773 773 82.353 2185 3114 1 chr3D.!!$F1 929
9 TraesCS1D01G025600 chr7D 56979419 56980346 927 False 754 754 81.398 2185 3110 1 chr7D.!!$F1 925
10 TraesCS1D01G025600 chr2D 447323374 447324305 931 False 750 750 81.263 2185 3114 1 chr2D.!!$F3 929
11 TraesCS1D01G025600 chr2D 450398973 450399543 570 False 588 588 85.569 1341 1915 1 chr2D.!!$F4 574
12 TraesCS1D01G025600 chr5B 160104165 160105052 887 True 725 725 81.481 2225 3110 1 chr5B.!!$R1 885
13 TraesCS1D01G025600 chr5A 220899103 220899669 566 True 582 582 85.569 1342 1915 1 chr5A.!!$R1 573
14 TraesCS1D01G025600 chr3B 27505942 27506509 567 True 568 568 84.772 1353 1939 1 chr3B.!!$R2 586
15 TraesCS1D01G025600 chr3B 22646081 22647013 932 True 340 340 73.482 2185 3114 1 chr3B.!!$R1 929
16 TraesCS1D01G025600 chr6B 52811366 52812297 931 True 440 440 75.399 2185 3114 1 chr6B.!!$R1 929
17 TraesCS1D01G025600 chr1B 624992510 624993428 918 True 331 331 73.548 2190 3105 1 chr1B.!!$R1 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.03254 GTTGGGGCTGCTTGTTTCAG 59.967 55.0 0.0 0.0 34.79 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2125 2183 0.251787 AAATTGACCACCTCCCTGGC 60.252 55.0 0.0 0.0 40.22 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.511900 TCGAAAGGTTGGCGGGTT 59.488 55.556 0.00 0.00 0.00 4.11
18 19 1.152922 TCGAAAGGTTGGCGGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
19 20 0.752376 TCGAAAGGTTGGCGGGTTTT 60.752 50.000 0.00 0.00 0.00 2.43
20 21 0.318360 CGAAAGGTTGGCGGGTTTTC 60.318 55.000 0.00 0.00 0.00 2.29
21 22 1.037493 GAAAGGTTGGCGGGTTTTCT 58.963 50.000 0.00 0.00 0.00 2.52
22 23 0.750249 AAAGGTTGGCGGGTTTTCTG 59.250 50.000 0.00 0.00 0.00 3.02
23 24 1.744320 AAGGTTGGCGGGTTTTCTGC 61.744 55.000 0.00 0.00 46.78 4.26
30 31 1.646189 GCGGGTTTTCTGCAAAAACA 58.354 45.000 24.99 2.61 46.73 2.83
31 32 2.003301 GCGGGTTTTCTGCAAAAACAA 58.997 42.857 24.99 0.00 46.73 2.83
32 33 2.416893 GCGGGTTTTCTGCAAAAACAAA 59.583 40.909 24.99 5.78 46.73 2.83
33 34 3.120165 GCGGGTTTTCTGCAAAAACAAAA 60.120 39.130 24.99 9.75 46.73 2.44
34 35 4.399112 CGGGTTTTCTGCAAAAACAAAAC 58.601 39.130 24.99 17.19 40.51 2.43
35 36 4.153296 CGGGTTTTCTGCAAAAACAAAACT 59.847 37.500 24.99 0.00 40.51 2.66
36 37 5.334491 CGGGTTTTCTGCAAAAACAAAACTT 60.334 36.000 24.99 0.00 40.51 2.66
37 38 6.442952 GGGTTTTCTGCAAAAACAAAACTTT 58.557 32.000 24.99 0.00 40.51 2.66
38 39 6.920758 GGGTTTTCTGCAAAAACAAAACTTTT 59.079 30.769 24.99 0.00 40.51 2.27
39 40 7.436673 GGGTTTTCTGCAAAAACAAAACTTTTT 59.563 29.630 24.99 0.00 40.51 1.94
64 65 8.712285 TTCTATATTTACTCAAAACAGGACCG 57.288 34.615 0.00 0.00 0.00 4.79
65 66 5.813080 ATATTTACTCAAAACAGGACCGC 57.187 39.130 0.00 0.00 0.00 5.68
66 67 1.504359 TTACTCAAAACAGGACCGCG 58.496 50.000 0.00 0.00 0.00 6.46
67 68 0.320073 TACTCAAAACAGGACCGCGG 60.320 55.000 26.86 26.86 0.00 6.46
68 69 1.597027 CTCAAAACAGGACCGCGGT 60.597 57.895 34.89 34.89 0.00 5.68
69 70 1.153127 TCAAAACAGGACCGCGGTT 60.153 52.632 34.65 15.76 0.00 4.44
70 71 1.161563 TCAAAACAGGACCGCGGTTC 61.162 55.000 34.65 32.27 0.00 3.62
71 72 1.153127 AAAACAGGACCGCGGTTCA 60.153 52.632 37.02 0.00 0.00 3.18
72 73 0.748729 AAAACAGGACCGCGGTTCAA 60.749 50.000 37.02 0.00 0.00 2.69
73 74 0.536460 AAACAGGACCGCGGTTCAAT 60.536 50.000 37.02 22.30 0.00 2.57
74 75 0.536460 AACAGGACCGCGGTTCAATT 60.536 50.000 37.02 26.53 0.00 2.32
75 76 0.953960 ACAGGACCGCGGTTCAATTC 60.954 55.000 37.02 20.88 0.00 2.17
76 77 0.953471 CAGGACCGCGGTTCAATTCA 60.953 55.000 37.02 0.00 0.00 2.57
77 78 0.673644 AGGACCGCGGTTCAATTCAG 60.674 55.000 37.02 4.60 0.00 3.02
78 79 0.672401 GGACCGCGGTTCAATTCAGA 60.672 55.000 34.65 0.00 0.00 3.27
79 80 1.153353 GACCGCGGTTCAATTCAGAA 58.847 50.000 34.65 0.00 0.00 3.02
80 81 1.533731 GACCGCGGTTCAATTCAGAAA 59.466 47.619 34.65 0.00 0.00 2.52
81 82 2.159382 ACCGCGGTTCAATTCAGAAAT 58.841 42.857 28.70 0.00 0.00 2.17
82 83 2.095263 ACCGCGGTTCAATTCAGAAATG 60.095 45.455 28.70 0.00 0.00 2.32
83 84 2.095263 CCGCGGTTCAATTCAGAAATGT 60.095 45.455 19.50 0.00 0.00 2.71
84 85 2.910482 CGCGGTTCAATTCAGAAATGTG 59.090 45.455 0.00 0.00 0.00 3.21
85 86 3.244976 GCGGTTCAATTCAGAAATGTGG 58.755 45.455 0.00 0.00 0.00 4.17
86 87 3.244976 CGGTTCAATTCAGAAATGTGGC 58.755 45.455 0.00 0.00 0.00 5.01
87 88 3.305267 CGGTTCAATTCAGAAATGTGGCA 60.305 43.478 0.00 0.00 0.00 4.92
88 89 3.989817 GGTTCAATTCAGAAATGTGGCAC 59.010 43.478 11.55 11.55 0.00 5.01
89 90 4.262164 GGTTCAATTCAGAAATGTGGCACT 60.262 41.667 19.83 0.00 0.00 4.40
90 91 5.291971 GTTCAATTCAGAAATGTGGCACTT 58.708 37.500 19.83 9.98 0.00 3.16
91 92 4.873817 TCAATTCAGAAATGTGGCACTTG 58.126 39.130 19.83 11.19 0.00 3.16
92 93 3.947910 ATTCAGAAATGTGGCACTTGG 57.052 42.857 19.83 4.11 0.00 3.61
93 94 2.363306 TCAGAAATGTGGCACTTGGT 57.637 45.000 19.83 4.47 0.00 3.67
94 95 2.665165 TCAGAAATGTGGCACTTGGTT 58.335 42.857 19.83 4.68 0.00 3.67
95 96 2.361757 TCAGAAATGTGGCACTTGGTTG 59.638 45.455 19.83 11.66 0.00 3.77
96 97 2.101249 CAGAAATGTGGCACTTGGTTGT 59.899 45.455 19.83 0.63 0.00 3.32
97 98 2.101249 AGAAATGTGGCACTTGGTTGTG 59.899 45.455 19.83 0.00 40.62 3.33
98 99 1.774110 AATGTGGCACTTGGTTGTGA 58.226 45.000 19.83 0.00 40.12 3.58
99 100 1.999648 ATGTGGCACTTGGTTGTGAT 58.000 45.000 19.83 0.00 40.12 3.06
100 101 1.774110 TGTGGCACTTGGTTGTGATT 58.226 45.000 19.83 0.00 40.12 2.57
101 102 2.106566 TGTGGCACTTGGTTGTGATTT 58.893 42.857 19.83 0.00 40.12 2.17
102 103 2.499289 TGTGGCACTTGGTTGTGATTTT 59.501 40.909 19.83 0.00 40.12 1.82
103 104 2.865551 GTGGCACTTGGTTGTGATTTTG 59.134 45.455 11.13 0.00 40.12 2.44
104 105 1.866601 GGCACTTGGTTGTGATTTTGC 59.133 47.619 0.00 0.00 40.12 3.68
105 106 1.866601 GCACTTGGTTGTGATTTTGCC 59.133 47.619 0.00 0.00 40.12 4.52
106 107 2.126467 CACTTGGTTGTGATTTTGCCG 58.874 47.619 0.00 0.00 40.12 5.69
107 108 2.028130 ACTTGGTTGTGATTTTGCCGA 58.972 42.857 0.00 0.00 0.00 5.54
108 109 2.627699 ACTTGGTTGTGATTTTGCCGAT 59.372 40.909 0.00 0.00 0.00 4.18
109 110 3.069443 ACTTGGTTGTGATTTTGCCGATT 59.931 39.130 0.00 0.00 0.00 3.34
110 111 3.296322 TGGTTGTGATTTTGCCGATTC 57.704 42.857 0.00 0.00 0.00 2.52
111 112 2.625314 TGGTTGTGATTTTGCCGATTCA 59.375 40.909 0.00 0.00 0.00 2.57
112 113 2.986479 GGTTGTGATTTTGCCGATTCAC 59.014 45.455 0.00 0.00 39.11 3.18
113 114 3.305335 GGTTGTGATTTTGCCGATTCACT 60.305 43.478 10.71 0.00 39.33 3.41
114 115 3.557577 TGTGATTTTGCCGATTCACTG 57.442 42.857 10.71 0.00 39.33 3.66
115 116 3.145286 TGTGATTTTGCCGATTCACTGA 58.855 40.909 10.71 0.00 39.33 3.41
116 117 3.758023 TGTGATTTTGCCGATTCACTGAT 59.242 39.130 10.71 0.00 39.33 2.90
117 118 4.940654 TGTGATTTTGCCGATTCACTGATA 59.059 37.500 10.71 0.00 39.33 2.15
118 119 5.414144 TGTGATTTTGCCGATTCACTGATAA 59.586 36.000 10.71 0.00 39.33 1.75
119 120 6.072230 TGTGATTTTGCCGATTCACTGATAAA 60.072 34.615 10.71 0.00 39.33 1.40
120 121 6.470235 GTGATTTTGCCGATTCACTGATAAAG 59.530 38.462 0.00 0.00 36.43 1.85
121 122 5.957842 TTTTGCCGATTCACTGATAAAGT 57.042 34.783 0.00 0.00 40.93 2.66
122 123 5.545658 TTTGCCGATTCACTGATAAAGTC 57.454 39.130 0.00 0.00 36.83 3.01
123 124 4.200838 TGCCGATTCACTGATAAAGTCA 57.799 40.909 0.00 0.00 36.83 3.41
124 125 3.932710 TGCCGATTCACTGATAAAGTCAC 59.067 43.478 0.00 0.00 36.83 3.67
125 126 4.184629 GCCGATTCACTGATAAAGTCACT 58.815 43.478 0.00 0.00 36.83 3.41
126 127 4.268884 GCCGATTCACTGATAAAGTCACTC 59.731 45.833 0.00 0.00 36.83 3.51
127 128 4.500837 CCGATTCACTGATAAAGTCACTCG 59.499 45.833 0.00 0.00 36.83 4.18
128 129 4.500837 CGATTCACTGATAAAGTCACTCGG 59.499 45.833 0.00 0.00 36.83 4.63
129 130 4.866508 TTCACTGATAAAGTCACTCGGT 57.133 40.909 0.00 0.00 36.83 4.69
130 131 5.970317 TTCACTGATAAAGTCACTCGGTA 57.030 39.130 0.00 0.00 36.83 4.02
131 132 5.970317 TCACTGATAAAGTCACTCGGTAA 57.030 39.130 0.00 0.00 36.83 2.85
132 133 6.335471 TCACTGATAAAGTCACTCGGTAAA 57.665 37.500 0.00 0.00 36.83 2.01
133 134 6.387465 TCACTGATAAAGTCACTCGGTAAAG 58.613 40.000 0.00 0.00 36.83 1.85
134 135 5.577164 CACTGATAAAGTCACTCGGTAAAGG 59.423 44.000 0.00 0.00 36.83 3.11
135 136 5.479375 ACTGATAAAGTCACTCGGTAAAGGA 59.521 40.000 0.00 0.00 31.64 3.36
136 137 5.962433 TGATAAAGTCACTCGGTAAAGGAG 58.038 41.667 0.00 0.00 37.54 3.69
137 138 5.713389 TGATAAAGTCACTCGGTAAAGGAGA 59.287 40.000 0.00 0.00 35.49 3.71
138 139 4.522722 AAAGTCACTCGGTAAAGGAGAG 57.477 45.455 0.00 0.00 37.96 3.20
139 140 3.157750 AGTCACTCGGTAAAGGAGAGT 57.842 47.619 0.00 0.00 45.07 3.24
140 141 3.498334 AGTCACTCGGTAAAGGAGAGTT 58.502 45.455 0.00 0.00 42.65 3.01
141 142 3.256136 AGTCACTCGGTAAAGGAGAGTTG 59.744 47.826 0.00 0.00 42.65 3.16
142 143 3.005578 GTCACTCGGTAAAGGAGAGTTGT 59.994 47.826 0.00 0.00 42.65 3.32
143 144 3.640029 TCACTCGGTAAAGGAGAGTTGTT 59.360 43.478 0.00 0.00 42.65 2.83
144 145 3.741344 CACTCGGTAAAGGAGAGTTGTTG 59.259 47.826 0.00 0.00 42.65 3.33
145 146 3.244112 ACTCGGTAAAGGAGAGTTGTTGG 60.244 47.826 0.00 0.00 41.93 3.77
146 147 2.038033 TCGGTAAAGGAGAGTTGTTGGG 59.962 50.000 0.00 0.00 0.00 4.12
147 148 2.791655 GGTAAAGGAGAGTTGTTGGGG 58.208 52.381 0.00 0.00 0.00 4.96
148 149 2.160205 GTAAAGGAGAGTTGTTGGGGC 58.840 52.381 0.00 0.00 0.00 5.80
149 150 0.853530 AAAGGAGAGTTGTTGGGGCT 59.146 50.000 0.00 0.00 0.00 5.19
150 151 0.111253 AAGGAGAGTTGTTGGGGCTG 59.889 55.000 0.00 0.00 0.00 4.85
151 152 1.973812 GGAGAGTTGTTGGGGCTGC 60.974 63.158 0.00 0.00 0.00 5.25
152 153 1.073897 GAGAGTTGTTGGGGCTGCT 59.926 57.895 0.00 0.00 0.00 4.24
153 154 0.538287 GAGAGTTGTTGGGGCTGCTT 60.538 55.000 0.00 0.00 0.00 3.91
154 155 0.825010 AGAGTTGTTGGGGCTGCTTG 60.825 55.000 0.00 0.00 0.00 4.01
155 156 1.076044 AGTTGTTGGGGCTGCTTGT 60.076 52.632 0.00 0.00 0.00 3.16
156 157 0.687427 AGTTGTTGGGGCTGCTTGTT 60.687 50.000 0.00 0.00 0.00 2.83
157 158 0.177836 GTTGTTGGGGCTGCTTGTTT 59.822 50.000 0.00 0.00 0.00 2.83
158 159 0.463620 TTGTTGGGGCTGCTTGTTTC 59.536 50.000 0.00 0.00 0.00 2.78
159 160 0.685785 TGTTGGGGCTGCTTGTTTCA 60.686 50.000 0.00 0.00 0.00 2.69
160 161 0.032540 GTTGGGGCTGCTTGTTTCAG 59.967 55.000 0.00 0.00 34.79 3.02
161 162 0.396974 TTGGGGCTGCTTGTTTCAGT 60.397 50.000 0.00 0.00 34.21 3.41
162 163 0.396974 TGGGGCTGCTTGTTTCAGTT 60.397 50.000 0.00 0.00 34.21 3.16
163 164 1.133637 TGGGGCTGCTTGTTTCAGTTA 60.134 47.619 0.00 0.00 34.21 2.24
164 165 1.960689 GGGGCTGCTTGTTTCAGTTAA 59.039 47.619 0.00 0.00 34.21 2.01
165 166 2.029918 GGGGCTGCTTGTTTCAGTTAAG 60.030 50.000 0.00 0.00 34.21 1.85
166 167 2.608016 GGGCTGCTTGTTTCAGTTAAGC 60.608 50.000 0.00 0.00 45.23 3.09
167 168 2.608016 GGCTGCTTGTTTCAGTTAAGCC 60.608 50.000 0.00 0.00 44.60 4.35
168 169 2.918131 GCTGCTTGTTTCAGTTAAGCCG 60.918 50.000 0.00 0.00 44.60 5.52
169 170 2.548057 CTGCTTGTTTCAGTTAAGCCGA 59.452 45.455 0.00 0.00 44.60 5.54
170 171 2.548057 TGCTTGTTTCAGTTAAGCCGAG 59.452 45.455 0.00 0.00 44.60 4.63
171 172 2.548480 GCTTGTTTCAGTTAAGCCGAGT 59.452 45.455 0.00 0.00 40.58 4.18
172 173 3.607078 GCTTGTTTCAGTTAAGCCGAGTG 60.607 47.826 0.00 0.00 40.58 3.51
173 174 3.188159 TGTTTCAGTTAAGCCGAGTGT 57.812 42.857 0.00 0.00 0.00 3.55
174 175 4.325028 TGTTTCAGTTAAGCCGAGTGTA 57.675 40.909 0.00 0.00 0.00 2.90
175 176 4.053295 TGTTTCAGTTAAGCCGAGTGTAC 58.947 43.478 0.00 0.00 0.00 2.90
176 177 2.624316 TCAGTTAAGCCGAGTGTACG 57.376 50.000 0.00 0.00 0.00 3.67
177 178 0.989890 CAGTTAAGCCGAGTGTACGC 59.010 55.000 0.00 0.00 0.00 4.42
178 179 0.886563 AGTTAAGCCGAGTGTACGCT 59.113 50.000 9.11 9.11 0.00 5.07
179 180 1.135460 AGTTAAGCCGAGTGTACGCTC 60.135 52.381 23.74 23.74 0.00 5.03
180 181 1.135460 GTTAAGCCGAGTGTACGCTCT 60.135 52.381 28.68 15.81 33.55 4.09
181 182 0.731417 TAAGCCGAGTGTACGCTCTC 59.269 55.000 28.68 20.97 33.55 3.20
185 186 2.875485 GAGTGTACGCTCTCGGCA 59.125 61.111 25.75 0.00 41.91 5.69
186 187 1.211969 GAGTGTACGCTCTCGGCAA 59.788 57.895 25.75 0.00 41.91 4.52
187 188 0.179134 GAGTGTACGCTCTCGGCAAT 60.179 55.000 25.75 0.00 41.91 3.56
188 189 0.246635 AGTGTACGCTCTCGGCAATT 59.753 50.000 2.24 0.00 41.91 2.32
189 190 1.076332 GTGTACGCTCTCGGCAATTT 58.924 50.000 0.00 0.00 41.91 1.82
190 191 1.075542 TGTACGCTCTCGGCAATTTG 58.924 50.000 0.00 0.00 41.91 2.32
191 192 0.247695 GTACGCTCTCGGCAATTTGC 60.248 55.000 13.04 13.04 44.08 3.68
192 193 1.692148 TACGCTCTCGGCAATTTGCG 61.692 55.000 14.83 10.39 46.21 4.85
193 194 2.870372 GCTCTCGGCAATTTGCGT 59.130 55.556 14.83 0.00 46.21 5.24
194 195 1.512734 GCTCTCGGCAATTTGCGTG 60.513 57.895 14.83 10.11 46.21 5.34
195 196 1.911293 GCTCTCGGCAATTTGCGTGA 61.911 55.000 14.83 13.53 46.21 4.35
196 197 0.095935 CTCTCGGCAATTTGCGTGAG 59.904 55.000 24.89 24.89 46.21 3.51
197 198 0.602638 TCTCGGCAATTTGCGTGAGT 60.603 50.000 27.34 0.00 46.21 3.41
198 199 0.238289 CTCGGCAATTTGCGTGAGTT 59.762 50.000 23.56 0.00 46.21 3.01
199 200 0.665835 TCGGCAATTTGCGTGAGTTT 59.334 45.000 14.83 0.00 46.21 2.66
200 201 0.777631 CGGCAATTTGCGTGAGTTTG 59.222 50.000 14.83 0.00 46.21 2.93
201 202 0.508213 GGCAATTTGCGTGAGTTTGC 59.492 50.000 14.83 0.00 46.21 3.68
202 203 0.508213 GCAATTTGCGTGAGTTTGCC 59.492 50.000 5.49 0.00 37.34 4.52
203 204 0.777631 CAATTTGCGTGAGTTTGCCG 59.222 50.000 0.00 0.00 0.00 5.69
204 205 0.665835 AATTTGCGTGAGTTTGCCGA 59.334 45.000 0.00 0.00 0.00 5.54
205 206 0.238289 ATTTGCGTGAGTTTGCCGAG 59.762 50.000 0.00 0.00 0.00 4.63
206 207 1.092921 TTTGCGTGAGTTTGCCGAGT 61.093 50.000 0.00 0.00 0.00 4.18
207 208 1.771073 TTGCGTGAGTTTGCCGAGTG 61.771 55.000 0.00 0.00 0.00 3.51
208 209 2.954753 GCGTGAGTTTGCCGAGTGG 61.955 63.158 0.00 0.00 38.77 4.00
209 210 2.317609 CGTGAGTTTGCCGAGTGGG 61.318 63.158 0.00 0.00 39.58 4.61
210 211 1.070786 GTGAGTTTGCCGAGTGGGA 59.929 57.895 0.00 0.00 38.47 4.37
211 212 0.951040 GTGAGTTTGCCGAGTGGGAG 60.951 60.000 0.00 0.00 36.70 4.30
212 213 2.032681 AGTTTGCCGAGTGGGAGC 59.967 61.111 0.00 0.00 36.70 4.70
213 214 2.032681 GTTTGCCGAGTGGGAGCT 59.967 61.111 0.00 0.00 36.70 4.09
214 215 2.035442 GTTTGCCGAGTGGGAGCTC 61.035 63.158 4.71 4.71 36.70 4.09
215 216 2.217038 TTTGCCGAGTGGGAGCTCT 61.217 57.895 14.64 0.00 36.70 4.09
216 217 2.172483 TTTGCCGAGTGGGAGCTCTC 62.172 60.000 14.64 10.93 36.70 3.20
219 220 4.200283 CGAGTGGGAGCTCTCGGC 62.200 72.222 14.64 6.78 46.26 5.54
220 221 3.071206 GAGTGGGAGCTCTCGGCA 61.071 66.667 14.64 0.00 44.79 5.69
221 222 2.604686 AGTGGGAGCTCTCGGCAA 60.605 61.111 14.64 0.00 44.79 4.52
222 223 2.172483 GAGTGGGAGCTCTCGGCAAA 62.172 60.000 14.64 0.00 44.79 3.68
223 224 1.743252 GTGGGAGCTCTCGGCAAAG 60.743 63.158 14.64 0.00 44.79 2.77
224 225 1.913262 TGGGAGCTCTCGGCAAAGA 60.913 57.895 14.64 0.00 44.79 2.52
225 226 1.448717 GGGAGCTCTCGGCAAAGAC 60.449 63.158 14.64 0.00 44.79 3.01
226 227 1.594310 GGAGCTCTCGGCAAAGACT 59.406 57.895 14.64 0.00 44.79 3.24
227 228 0.036858 GGAGCTCTCGGCAAAGACTT 60.037 55.000 14.64 0.00 44.79 3.01
228 229 1.074752 GAGCTCTCGGCAAAGACTTG 58.925 55.000 6.43 0.00 44.79 3.16
229 230 0.681733 AGCTCTCGGCAAAGACTTGA 59.318 50.000 0.00 0.00 44.79 3.02
230 231 1.277557 AGCTCTCGGCAAAGACTTGAT 59.722 47.619 0.00 0.00 44.79 2.57
231 232 1.396301 GCTCTCGGCAAAGACTTGATG 59.604 52.381 0.00 0.00 41.35 3.07
232 233 2.005451 CTCTCGGCAAAGACTTGATGG 58.995 52.381 0.00 0.00 34.14 3.51
233 234 1.623311 TCTCGGCAAAGACTTGATGGA 59.377 47.619 0.00 0.00 34.14 3.41
234 235 2.038426 TCTCGGCAAAGACTTGATGGAA 59.962 45.455 0.00 0.00 34.14 3.53
235 236 2.151202 TCGGCAAAGACTTGATGGAAC 58.849 47.619 0.00 0.00 34.14 3.62
236 237 1.200020 CGGCAAAGACTTGATGGAACC 59.800 52.381 0.00 0.00 34.14 3.62
237 238 2.238521 GGCAAAGACTTGATGGAACCA 58.761 47.619 0.00 0.00 34.14 3.67
238 239 2.229784 GGCAAAGACTTGATGGAACCAG 59.770 50.000 0.00 0.00 34.14 4.00
239 240 2.352127 GCAAAGACTTGATGGAACCAGC 60.352 50.000 1.88 1.88 34.14 4.85
240 241 1.813513 AAGACTTGATGGAACCAGCG 58.186 50.000 4.67 0.00 34.72 5.18
241 242 0.687354 AGACTTGATGGAACCAGCGT 59.313 50.000 4.67 0.00 34.72 5.07
242 243 1.079503 GACTTGATGGAACCAGCGTC 58.920 55.000 4.67 3.51 34.72 5.19
243 244 0.396435 ACTTGATGGAACCAGCGTCA 59.604 50.000 4.67 0.00 34.72 4.35
244 245 1.081892 CTTGATGGAACCAGCGTCAG 58.918 55.000 4.67 0.00 34.72 3.51
245 246 0.396435 TTGATGGAACCAGCGTCAGT 59.604 50.000 4.67 0.00 34.72 3.41
246 247 0.320683 TGATGGAACCAGCGTCAGTG 60.321 55.000 4.67 0.00 34.72 3.66
247 248 0.037326 GATGGAACCAGCGTCAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
248 249 0.396435 ATGGAACCAGCGTCAGTGAA 59.604 50.000 0.00 0.00 0.00 3.18
249 250 0.249868 TGGAACCAGCGTCAGTGAAG 60.250 55.000 1.20 1.20 0.00 3.02
250 251 0.249911 GGAACCAGCGTCAGTGAAGT 60.250 55.000 7.91 0.00 0.00 3.01
251 252 1.140816 GAACCAGCGTCAGTGAAGTC 58.859 55.000 7.91 0.78 0.00 3.01
252 253 0.464036 AACCAGCGTCAGTGAAGTCA 59.536 50.000 7.91 0.00 0.00 3.41
253 254 0.249489 ACCAGCGTCAGTGAAGTCAC 60.249 55.000 7.91 3.12 46.77 3.67
267 268 6.617289 GTGAAGTCACTTTTGTTTGTCAAG 57.383 37.500 4.15 0.00 43.25 3.02
268 269 6.378582 GTGAAGTCACTTTTGTTTGTCAAGA 58.621 36.000 4.15 0.00 43.25 3.02
269 270 7.029563 GTGAAGTCACTTTTGTTTGTCAAGAT 58.970 34.615 4.15 0.00 43.25 2.40
270 271 7.008628 GTGAAGTCACTTTTGTTTGTCAAGATG 59.991 37.037 4.15 0.00 43.25 2.90
271 272 5.343249 AGTCACTTTTGTTTGTCAAGATGC 58.657 37.500 0.00 0.00 37.35 3.91
272 273 5.101628 GTCACTTTTGTTTGTCAAGATGCA 58.898 37.500 0.00 0.00 37.35 3.96
273 274 5.576384 GTCACTTTTGTTTGTCAAGATGCAA 59.424 36.000 0.00 0.00 37.35 4.08
274 275 6.256321 GTCACTTTTGTTTGTCAAGATGCAAT 59.744 34.615 0.00 0.00 37.35 3.56
275 276 6.256104 TCACTTTTGTTTGTCAAGATGCAATG 59.744 34.615 0.00 0.00 37.35 2.82
276 277 6.036300 CACTTTTGTTTGTCAAGATGCAATGT 59.964 34.615 0.00 0.00 37.35 2.71
277 278 6.594937 ACTTTTGTTTGTCAAGATGCAATGTT 59.405 30.769 0.00 0.00 37.35 2.71
278 279 6.981762 TTTGTTTGTCAAGATGCAATGTTT 57.018 29.167 0.00 0.00 37.35 2.83
279 280 5.970140 TGTTTGTCAAGATGCAATGTTTG 57.030 34.783 0.00 0.00 0.00 2.93
280 281 4.809958 TGTTTGTCAAGATGCAATGTTTGG 59.190 37.500 0.00 0.00 0.00 3.28
281 282 3.029320 TGTCAAGATGCAATGTTTGGC 57.971 42.857 0.00 0.00 0.00 4.52
282 283 2.629137 TGTCAAGATGCAATGTTTGGCT 59.371 40.909 0.00 0.00 0.00 4.75
283 284 3.248266 GTCAAGATGCAATGTTTGGCTC 58.752 45.455 0.00 0.00 0.00 4.70
284 285 3.057033 GTCAAGATGCAATGTTTGGCTCT 60.057 43.478 0.00 0.00 0.00 4.09
285 286 3.192001 TCAAGATGCAATGTTTGGCTCTC 59.808 43.478 0.00 0.00 0.00 3.20
286 287 1.741706 AGATGCAATGTTTGGCTCTCG 59.258 47.619 0.00 0.00 0.00 4.04
287 288 0.171903 ATGCAATGTTTGGCTCTCGC 59.828 50.000 0.00 0.00 0.00 5.03
288 289 1.171549 TGCAATGTTTGGCTCTCGCA 61.172 50.000 0.00 0.00 38.10 5.10
289 290 0.039256 GCAATGTTTGGCTCTCGCAA 60.039 50.000 0.00 0.00 38.10 4.85
290 291 1.602668 GCAATGTTTGGCTCTCGCAAA 60.603 47.619 0.00 0.00 38.10 3.68
291 292 2.053627 CAATGTTTGGCTCTCGCAAAC 58.946 47.619 8.14 8.14 37.51 2.93
292 293 1.609208 ATGTTTGGCTCTCGCAAACT 58.391 45.000 14.06 1.43 37.69 2.66
293 294 0.944386 TGTTTGGCTCTCGCAAACTC 59.056 50.000 14.06 0.00 37.69 3.01
294 295 1.230324 GTTTGGCTCTCGCAAACTCT 58.770 50.000 0.00 0.00 35.84 3.24
295 296 2.224185 TGTTTGGCTCTCGCAAACTCTA 60.224 45.455 14.06 0.00 37.69 2.43
296 297 3.003480 GTTTGGCTCTCGCAAACTCTAT 58.997 45.455 0.00 0.00 35.84 1.98
297 298 2.299993 TGGCTCTCGCAAACTCTATG 57.700 50.000 0.00 0.00 38.10 2.23
298 299 0.933796 GGCTCTCGCAAACTCTATGC 59.066 55.000 0.00 0.00 40.41 3.14
299 300 1.472376 GGCTCTCGCAAACTCTATGCT 60.472 52.381 0.00 0.00 41.64 3.79
300 301 1.592081 GCTCTCGCAAACTCTATGCTG 59.408 52.381 0.00 0.00 41.64 4.41
301 302 2.736719 GCTCTCGCAAACTCTATGCTGA 60.737 50.000 0.00 0.00 41.64 4.26
302 303 3.114809 CTCTCGCAAACTCTATGCTGAG 58.885 50.000 11.41 11.41 41.64 3.35
303 304 6.977821 GCTCTCGCAAACTCTATGCTGAGT 62.978 50.000 14.85 2.59 41.16 3.41
304 305 2.602211 CTCGCAAACTCTATGCTGAGTG 59.398 50.000 8.01 0.00 45.49 3.51
305 306 1.061711 CGCAAACTCTATGCTGAGTGC 59.938 52.381 8.01 7.52 45.49 4.40
306 307 1.399791 GCAAACTCTATGCTGAGTGCC 59.600 52.381 8.01 0.00 45.49 5.01
307 308 2.012673 CAAACTCTATGCTGAGTGCCC 58.987 52.381 8.01 0.00 45.49 5.36
308 309 0.176680 AACTCTATGCTGAGTGCCCG 59.823 55.000 8.01 0.00 45.49 6.13
309 310 0.684479 ACTCTATGCTGAGTGCCCGA 60.684 55.000 6.76 0.00 44.64 5.14
310 311 0.249238 CTCTATGCTGAGTGCCCGAC 60.249 60.000 0.00 0.00 42.00 4.79
311 312 1.589993 CTATGCTGAGTGCCCGACG 60.590 63.158 0.00 0.00 42.00 5.12
312 313 2.960957 CTATGCTGAGTGCCCGACGG 62.961 65.000 6.99 6.99 42.00 4.79
314 315 4.681978 GCTGAGTGCCCGACGGTT 62.682 66.667 13.94 0.00 35.15 4.44
315 316 2.738521 CTGAGTGCCCGACGGTTG 60.739 66.667 13.94 0.00 0.00 3.77
316 317 4.308458 TGAGTGCCCGACGGTTGG 62.308 66.667 13.94 7.49 0.00 3.77
317 318 4.309950 GAGTGCCCGACGGTTGGT 62.310 66.667 13.94 0.00 0.00 3.67
318 319 3.819877 GAGTGCCCGACGGTTGGTT 62.820 63.158 13.94 0.00 0.00 3.67
319 320 3.351416 GTGCCCGACGGTTGGTTC 61.351 66.667 13.94 5.47 0.00 3.62
320 321 3.862991 TGCCCGACGGTTGGTTCA 61.863 61.111 13.94 7.90 0.00 3.18
321 322 3.351416 GCCCGACGGTTGGTTCAC 61.351 66.667 13.94 0.00 0.00 3.18
322 323 3.039588 CCCGACGGTTGGTTCACG 61.040 66.667 13.94 0.00 0.00 4.35
323 324 3.039588 CCGACGGTTGGTTCACGG 61.040 66.667 5.48 0.00 34.77 4.94
324 325 2.279650 CGACGGTTGGTTCACGGT 60.280 61.111 0.00 0.00 33.21 4.83
325 326 1.007502 CGACGGTTGGTTCACGGTA 60.008 57.895 0.00 0.00 30.84 4.02
326 327 0.597118 CGACGGTTGGTTCACGGTAA 60.597 55.000 0.00 0.00 30.84 2.85
327 328 1.580815 GACGGTTGGTTCACGGTAAA 58.419 50.000 0.00 0.00 30.84 2.01
328 329 1.528161 GACGGTTGGTTCACGGTAAAG 59.472 52.381 0.00 0.00 30.84 1.85
329 330 1.134431 ACGGTTGGTTCACGGTAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
330 331 1.941975 CGGTTGGTTCACGGTAAAGTT 59.058 47.619 0.00 0.00 0.00 2.66
331 332 2.032636 CGGTTGGTTCACGGTAAAGTTC 60.033 50.000 0.00 0.00 0.00 3.01
332 333 3.208594 GGTTGGTTCACGGTAAAGTTCT 58.791 45.455 0.00 0.00 0.00 3.01
333 334 4.379652 GGTTGGTTCACGGTAAAGTTCTA 58.620 43.478 0.00 0.00 0.00 2.10
334 335 4.999311 GGTTGGTTCACGGTAAAGTTCTAT 59.001 41.667 0.00 0.00 0.00 1.98
335 336 5.471116 GGTTGGTTCACGGTAAAGTTCTATT 59.529 40.000 0.00 0.00 0.00 1.73
336 337 6.016860 GGTTGGTTCACGGTAAAGTTCTATTT 60.017 38.462 0.00 0.00 0.00 1.40
337 338 6.548441 TGGTTCACGGTAAAGTTCTATTTG 57.452 37.500 0.00 0.00 0.00 2.32
338 339 5.049267 TGGTTCACGGTAAAGTTCTATTTGC 60.049 40.000 0.00 0.00 0.00 3.68
339 340 5.388111 GTTCACGGTAAAGTTCTATTTGCC 58.612 41.667 0.00 0.00 40.40 4.52
340 341 4.901868 TCACGGTAAAGTTCTATTTGCCT 58.098 39.130 5.08 0.00 41.30 4.75
341 342 4.693566 TCACGGTAAAGTTCTATTTGCCTG 59.306 41.667 5.08 3.37 41.30 4.85
342 343 4.693566 CACGGTAAAGTTCTATTTGCCTGA 59.306 41.667 5.08 0.00 41.30 3.86
343 344 5.180492 CACGGTAAAGTTCTATTTGCCTGAA 59.820 40.000 5.08 0.00 41.30 3.02
344 345 5.766174 ACGGTAAAGTTCTATTTGCCTGAAA 59.234 36.000 5.08 0.00 41.30 2.69
345 346 6.072673 ACGGTAAAGTTCTATTTGCCTGAAAG 60.073 38.462 5.08 0.00 41.30 2.62
363 364 2.967270 GGTGTACACCGGGTAGTCT 58.033 57.895 28.55 0.00 42.29 3.24
364 365 1.260544 GGTGTACACCGGGTAGTCTT 58.739 55.000 28.55 0.00 42.29 3.01
365 366 1.620323 GGTGTACACCGGGTAGTCTTT 59.380 52.381 28.55 0.00 42.29 2.52
366 367 2.611224 GGTGTACACCGGGTAGTCTTTG 60.611 54.545 28.55 0.00 42.29 2.77
367 368 1.001181 TGTACACCGGGTAGTCTTTGC 59.999 52.381 6.32 0.00 31.13 3.68
368 369 1.274447 GTACACCGGGTAGTCTTTGCT 59.726 52.381 6.32 0.00 31.13 3.91
369 370 1.636148 ACACCGGGTAGTCTTTGCTA 58.364 50.000 6.32 0.00 0.00 3.49
370 371 1.972795 ACACCGGGTAGTCTTTGCTAA 59.027 47.619 6.32 0.00 0.00 3.09
371 372 2.028385 ACACCGGGTAGTCTTTGCTAAG 60.028 50.000 6.32 1.04 0.00 2.18
372 373 2.232941 CACCGGGTAGTCTTTGCTAAGA 59.767 50.000 6.32 6.50 38.06 2.10
373 374 2.901839 ACCGGGTAGTCTTTGCTAAGAA 59.098 45.455 12.25 0.00 41.86 2.52
374 375 3.259902 CCGGGTAGTCTTTGCTAAGAAC 58.740 50.000 12.25 8.00 41.86 3.01
375 376 3.306502 CCGGGTAGTCTTTGCTAAGAACA 60.307 47.826 12.25 0.75 41.86 3.18
376 377 4.312443 CGGGTAGTCTTTGCTAAGAACAA 58.688 43.478 12.25 0.00 41.86 2.83
377 378 4.935808 CGGGTAGTCTTTGCTAAGAACAAT 59.064 41.667 12.25 2.48 41.86 2.71
378 379 5.411669 CGGGTAGTCTTTGCTAAGAACAATT 59.588 40.000 12.25 0.00 41.86 2.32
379 380 6.402226 CGGGTAGTCTTTGCTAAGAACAATTC 60.402 42.308 12.25 0.00 41.86 2.17
380 381 6.655425 GGGTAGTCTTTGCTAAGAACAATTCT 59.345 38.462 12.25 6.89 41.86 2.40
394 395 7.440523 AGAACAATTCTTGGCAAAGTACTAG 57.559 36.000 0.00 0.00 36.36 2.57
395 396 5.629079 ACAATTCTTGGCAAAGTACTAGC 57.371 39.130 10.84 10.84 34.78 3.42
396 397 8.917594 AGAACAATTCTTGGCAAAGTACTAGCC 61.918 40.741 25.00 25.00 39.69 3.93
401 402 2.381725 GGCAAAGTACTAGCCGAGTT 57.618 50.000 19.80 0.00 39.81 3.01
402 403 2.696506 GGCAAAGTACTAGCCGAGTTT 58.303 47.619 19.80 0.00 39.81 2.66
403 404 3.853475 GGCAAAGTACTAGCCGAGTTTA 58.147 45.455 19.80 0.00 39.81 2.01
404 405 4.439968 GGCAAAGTACTAGCCGAGTTTAT 58.560 43.478 19.80 0.00 39.81 1.40
405 406 4.874396 GGCAAAGTACTAGCCGAGTTTATT 59.126 41.667 19.80 0.00 39.81 1.40
406 407 5.353400 GGCAAAGTACTAGCCGAGTTTATTT 59.647 40.000 19.80 0.00 39.81 1.40
407 408 6.248631 GCAAAGTACTAGCCGAGTTTATTTG 58.751 40.000 8.62 11.95 39.81 2.32
408 409 6.674760 GCAAAGTACTAGCCGAGTTTATTTGG 60.675 42.308 8.62 0.00 39.81 3.28
409 410 4.439968 AGTACTAGCCGAGTTTATTTGGC 58.560 43.478 0.00 0.00 46.31 4.52
412 413 2.882170 GCCGAGTTTATTTGGCCCT 58.118 52.632 0.00 0.00 41.09 5.19
413 414 1.182667 GCCGAGTTTATTTGGCCCTT 58.817 50.000 0.00 0.00 41.09 3.95
414 415 1.548719 GCCGAGTTTATTTGGCCCTTT 59.451 47.619 0.00 0.00 41.09 3.11
415 416 2.673893 GCCGAGTTTATTTGGCCCTTTG 60.674 50.000 0.00 0.00 41.09 2.77
416 417 2.606108 CGAGTTTATTTGGCCCTTTGC 58.394 47.619 0.00 0.00 40.16 3.68
417 418 2.231235 CGAGTTTATTTGGCCCTTTGCT 59.769 45.455 0.00 0.00 40.92 3.91
418 419 3.588955 GAGTTTATTTGGCCCTTTGCTG 58.411 45.455 0.00 0.00 40.92 4.41
419 420 2.302733 AGTTTATTTGGCCCTTTGCTGG 59.697 45.455 0.00 0.00 40.92 4.85
426 427 4.293610 CCCTTTGCTGGGGTGTTT 57.706 55.556 2.64 0.00 43.45 2.83
427 428 2.049435 CCCTTTGCTGGGGTGTTTC 58.951 57.895 2.64 0.00 43.45 2.78
428 429 0.469892 CCCTTTGCTGGGGTGTTTCT 60.470 55.000 2.64 0.00 43.45 2.52
429 430 0.675633 CCTTTGCTGGGGTGTTTCTG 59.324 55.000 0.00 0.00 0.00 3.02
430 431 0.675633 CTTTGCTGGGGTGTTTCTGG 59.324 55.000 0.00 0.00 0.00 3.86
431 432 1.398958 TTTGCTGGGGTGTTTCTGGC 61.399 55.000 0.00 0.00 0.00 4.85
432 433 2.203480 GCTGGGGTGTTTCTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
433 434 2.564721 GCTGGGGTGTTTCTGGCAC 61.565 63.158 0.00 0.00 36.22 5.01
434 435 1.151450 CTGGGGTGTTTCTGGCACT 59.849 57.895 0.00 0.00 37.07 4.40
435 436 0.890996 CTGGGGTGTTTCTGGCACTC 60.891 60.000 0.00 0.00 36.65 3.51
436 437 1.966451 GGGGTGTTTCTGGCACTCG 60.966 63.158 0.00 0.00 38.17 4.18
437 438 1.966451 GGGTGTTTCTGGCACTCGG 60.966 63.158 0.00 0.00 37.07 4.63
438 439 2.617274 GGTGTTTCTGGCACTCGGC 61.617 63.158 0.00 0.00 43.74 5.54
439 440 2.664851 TGTTTCTGGCACTCGGCG 60.665 61.111 0.00 0.00 46.16 6.46
440 441 2.665185 GTTTCTGGCACTCGGCGT 60.665 61.111 6.85 0.00 46.16 5.68
441 442 1.373748 GTTTCTGGCACTCGGCGTA 60.374 57.895 6.85 0.00 46.16 4.42
442 443 1.080093 TTTCTGGCACTCGGCGTAG 60.080 57.895 6.85 5.77 46.16 3.51
443 444 1.812686 TTTCTGGCACTCGGCGTAGT 61.813 55.000 6.85 6.48 46.16 2.73
448 449 4.957266 CACTCGGCGTAGTGTGAA 57.043 55.556 22.65 0.00 41.63 3.18
449 450 3.188773 CACTCGGCGTAGTGTGAAA 57.811 52.632 22.65 0.00 41.63 2.69
450 451 1.710013 CACTCGGCGTAGTGTGAAAT 58.290 50.000 22.65 0.00 41.63 2.17
451 452 2.066262 CACTCGGCGTAGTGTGAAATT 58.934 47.619 22.65 0.00 41.63 1.82
452 453 2.092211 CACTCGGCGTAGTGTGAAATTC 59.908 50.000 22.65 0.00 41.63 2.17
453 454 1.659098 CTCGGCGTAGTGTGAAATTCC 59.341 52.381 6.85 0.00 0.00 3.01
454 455 1.001068 TCGGCGTAGTGTGAAATTCCA 59.999 47.619 6.85 0.00 0.00 3.53
455 456 1.393539 CGGCGTAGTGTGAAATTCCAG 59.606 52.381 0.00 0.00 0.00 3.86
456 457 2.423577 GGCGTAGTGTGAAATTCCAGT 58.576 47.619 0.00 0.00 0.00 4.00
1067 1091 5.055265 TCTAGAGATACTGGTTCAGGGAG 57.945 47.826 0.00 0.00 35.51 4.30
1310 1346 1.839424 GAGCTAATTGTTGGCACCCT 58.161 50.000 1.02 0.00 39.92 4.34
1522 1562 5.730550 TGTCAAACTCACTGTCTAACAACT 58.269 37.500 0.00 0.00 0.00 3.16
1570 1619 5.752955 CCAGGTAAACCAAACAAATCAGTTG 59.247 40.000 1.26 0.00 39.95 3.16
1572 1621 5.053811 GGTAAACCAAACAAATCAGTTGGG 58.946 41.667 6.61 1.80 46.19 4.12
1582 1631 2.496899 ATCAGTTGGGCAAGTGGTAG 57.503 50.000 0.00 0.00 41.02 3.18
1584 1633 1.071699 TCAGTTGGGCAAGTGGTAGTC 59.928 52.381 0.00 0.00 41.02 2.59
1602 1651 1.066787 GTCTGGGTGGAGTCTAAGCAC 60.067 57.143 0.00 0.00 0.00 4.40
1615 1664 4.061596 GTCTAAGCACAAGAAGCAGAAGT 58.938 43.478 0.00 0.00 0.00 3.01
1644 1693 8.939201 TTGAGATAATGAAGAGTAAGAAGCAG 57.061 34.615 0.00 0.00 0.00 4.24
1658 1707 7.680730 AGTAAGAAGCAGTTTAAATCTCCTGA 58.319 34.615 7.52 0.00 0.00 3.86
1667 1716 8.462016 GCAGTTTAAATCTCCTGATGTTGTATT 58.538 33.333 7.52 0.00 32.44 1.89
1690 1739 1.131638 TGAGTTCCAGAGTTGGTGCT 58.868 50.000 0.00 0.00 45.26 4.40
1752 1801 3.686016 AGGTTGTTTCTATTCATGGCGT 58.314 40.909 0.00 0.00 0.00 5.68
1847 1896 0.036306 GGTCTTGGGACGTGGAATGT 59.964 55.000 0.00 0.00 42.97 2.71
1855 1904 4.283337 TGGGACGTGGAATGTATCTTCTA 58.717 43.478 0.00 0.00 35.18 2.10
1890 1939 5.366460 TGTGATTTTGTTTGACATGCCAAT 58.634 33.333 0.00 0.00 0.00 3.16
1952 2001 2.543067 GATGGGTGAGGAGGGTGTGC 62.543 65.000 0.00 0.00 0.00 4.57
1973 2022 5.412594 GTGCCTATTGTCTTTGTGAATGAGA 59.587 40.000 0.00 0.00 0.00 3.27
2037 2086 2.001803 CAGGAGCTCCAATTCCCCA 58.998 57.895 33.90 0.00 38.89 4.96
2125 2183 1.134367 CCTTCTTGACCAGCATGCATG 59.866 52.381 22.70 22.70 31.97 4.06
2210 2269 3.907894 TGCGGGTGAAAAACTTGTATC 57.092 42.857 0.00 0.00 0.00 2.24
2217 2276 6.206498 GGGTGAAAAACTTGTATCACTCAAC 58.794 40.000 4.94 0.00 41.77 3.18
2260 2319 5.207354 TCAGAAGCTATCTCCATCACTTCT 58.793 41.667 0.00 0.00 43.37 2.85
2263 2322 6.040278 CAGAAGCTATCTCCATCACTTCTACA 59.960 42.308 0.00 0.00 41.30 2.74
2297 2356 1.123928 CCAGGTCATGGTCCTACCTC 58.876 60.000 9.41 0.00 44.91 3.85
2312 2371 4.710375 TCCTACCTCGAGTTCTAGCAAAAT 59.290 41.667 12.31 0.00 0.00 1.82
2313 2372 4.806247 CCTACCTCGAGTTCTAGCAAAATG 59.194 45.833 12.31 0.00 0.00 2.32
2344 2403 9.959721 AAACTATCACTAGCTTTATTTTGAGGA 57.040 29.630 0.00 0.00 0.00 3.71
2362 2421 8.777865 TTTGAGGACTAGAAACATGAGTAATG 57.222 34.615 0.00 0.00 42.48 1.90
2430 2489 1.873591 GGCATAAATTGAGCGGTCGAT 59.126 47.619 11.63 11.63 0.00 3.59
2484 2543 3.196685 AGAGAATCCAGCTCCACAACTAC 59.803 47.826 0.00 0.00 33.66 2.73
2517 2576 1.270041 GCGTTGAATTGCCAGGGAAAA 60.270 47.619 0.00 0.00 0.00 2.29
2612 2676 4.044065 AGTTGATGATCCCTTGGTGGTTAA 59.956 41.667 0.00 0.00 0.00 2.01
2627 2691 4.892934 GGTGGTTAAGCATAATCATCCCAA 59.107 41.667 11.06 0.00 34.74 4.12
2638 2702 1.656587 TCATCCCAACACCAGCTACT 58.343 50.000 0.00 0.00 0.00 2.57
2778 2844 2.533916 TGCATGATTTACCTTTGGCCA 58.466 42.857 0.00 0.00 0.00 5.36
2901 2967 3.067461 CACTTCATTCCGGACAAACCAAA 59.933 43.478 1.83 0.00 38.90 3.28
2966 3032 0.622665 AAGGAGCCAGGACATGAAGG 59.377 55.000 0.00 0.00 0.00 3.46
3066 3132 2.637025 CAAACTGGCACCGAACGG 59.363 61.111 11.83 11.83 42.03 4.44
3092 3158 4.202131 GGGTGGTAGTTATCTTCTTCCTCG 60.202 50.000 0.00 0.00 0.00 4.63
3101 3167 0.905357 CTTCTTCCTCGACCCCACAT 59.095 55.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.037493 AGAAAACCCGCCAACCTTTC 58.963 50.000 0.00 0.00 0.00 2.62
3 4 0.750249 CAGAAAACCCGCCAACCTTT 59.250 50.000 0.00 0.00 0.00 3.11
6 7 2.022240 TTGCAGAAAACCCGCCAACC 62.022 55.000 0.00 0.00 0.00 3.77
7 8 0.179097 TTTGCAGAAAACCCGCCAAC 60.179 50.000 0.00 0.00 0.00 3.77
8 9 0.537188 TTTTGCAGAAAACCCGCCAA 59.463 45.000 0.00 0.00 0.00 4.52
9 10 0.537188 TTTTTGCAGAAAACCCGCCA 59.463 45.000 0.00 0.00 30.56 5.69
10 11 0.934496 GTTTTTGCAGAAAACCCGCC 59.066 50.000 18.53 0.00 34.88 6.13
11 12 1.646189 TGTTTTTGCAGAAAACCCGC 58.354 45.000 22.79 7.28 38.88 6.13
12 13 4.153296 AGTTTTGTTTTTGCAGAAAACCCG 59.847 37.500 22.79 0.00 38.50 5.28
13 14 5.621197 AGTTTTGTTTTTGCAGAAAACCC 57.379 34.783 22.79 13.92 38.50 4.11
14 15 7.922505 AAAAGTTTTGTTTTTGCAGAAAACC 57.077 28.000 22.79 13.70 38.50 3.27
38 39 9.158233 CGGTCCTGTTTTGAGTAAATATAGAAA 57.842 33.333 0.00 0.00 0.00 2.52
39 40 7.279313 GCGGTCCTGTTTTGAGTAAATATAGAA 59.721 37.037 0.00 0.00 0.00 2.10
40 41 6.759827 GCGGTCCTGTTTTGAGTAAATATAGA 59.240 38.462 0.00 0.00 0.00 1.98
41 42 6.292168 CGCGGTCCTGTTTTGAGTAAATATAG 60.292 42.308 0.00 0.00 0.00 1.31
42 43 5.521010 CGCGGTCCTGTTTTGAGTAAATATA 59.479 40.000 0.00 0.00 0.00 0.86
43 44 4.331717 CGCGGTCCTGTTTTGAGTAAATAT 59.668 41.667 0.00 0.00 0.00 1.28
44 45 3.680937 CGCGGTCCTGTTTTGAGTAAATA 59.319 43.478 0.00 0.00 0.00 1.40
45 46 2.482721 CGCGGTCCTGTTTTGAGTAAAT 59.517 45.455 0.00 0.00 0.00 1.40
46 47 1.868498 CGCGGTCCTGTTTTGAGTAAA 59.132 47.619 0.00 0.00 0.00 2.01
47 48 1.504359 CGCGGTCCTGTTTTGAGTAA 58.496 50.000 0.00 0.00 0.00 2.24
48 49 0.320073 CCGCGGTCCTGTTTTGAGTA 60.320 55.000 19.50 0.00 0.00 2.59
49 50 1.597027 CCGCGGTCCTGTTTTGAGT 60.597 57.895 19.50 0.00 0.00 3.41
50 51 1.164041 AACCGCGGTCCTGTTTTGAG 61.164 55.000 34.29 0.00 0.00 3.02
51 52 1.153127 AACCGCGGTCCTGTTTTGA 60.153 52.632 34.29 0.00 0.00 2.69
52 53 1.281656 GAACCGCGGTCCTGTTTTG 59.718 57.895 34.29 0.00 0.00 2.44
53 54 0.748729 TTGAACCGCGGTCCTGTTTT 60.749 50.000 34.29 14.80 0.00 2.43
54 55 0.536460 ATTGAACCGCGGTCCTGTTT 60.536 50.000 34.29 15.71 0.00 2.83
55 56 0.536460 AATTGAACCGCGGTCCTGTT 60.536 50.000 34.29 20.83 0.00 3.16
56 57 0.953960 GAATTGAACCGCGGTCCTGT 60.954 55.000 34.29 17.10 0.00 4.00
57 58 0.953471 TGAATTGAACCGCGGTCCTG 60.953 55.000 34.29 4.06 0.00 3.86
58 59 0.673644 CTGAATTGAACCGCGGTCCT 60.674 55.000 34.29 18.48 0.00 3.85
59 60 0.672401 TCTGAATTGAACCGCGGTCC 60.672 55.000 34.29 22.50 0.00 4.46
60 61 1.153353 TTCTGAATTGAACCGCGGTC 58.847 50.000 34.29 24.26 0.00 4.79
61 62 1.600023 TTTCTGAATTGAACCGCGGT 58.400 45.000 28.70 28.70 0.00 5.68
62 63 2.095263 ACATTTCTGAATTGAACCGCGG 60.095 45.455 26.86 26.86 0.00 6.46
63 64 2.910482 CACATTTCTGAATTGAACCGCG 59.090 45.455 16.62 0.00 0.00 6.46
64 65 3.244976 CCACATTTCTGAATTGAACCGC 58.755 45.455 16.62 0.00 0.00 5.68
65 66 3.244976 GCCACATTTCTGAATTGAACCG 58.755 45.455 16.62 4.80 0.00 4.44
66 67 3.989817 GTGCCACATTTCTGAATTGAACC 59.010 43.478 16.62 6.59 0.00 3.62
67 68 4.874970 AGTGCCACATTTCTGAATTGAAC 58.125 39.130 16.62 9.97 0.00 3.18
68 69 5.291178 CAAGTGCCACATTTCTGAATTGAA 58.709 37.500 16.62 0.00 0.00 2.69
69 70 4.262121 CCAAGTGCCACATTTCTGAATTGA 60.262 41.667 16.62 0.00 0.00 2.57
70 71 3.991773 CCAAGTGCCACATTTCTGAATTG 59.008 43.478 9.96 9.96 0.00 2.32
71 72 3.642848 ACCAAGTGCCACATTTCTGAATT 59.357 39.130 0.00 0.00 0.00 2.17
72 73 3.233507 ACCAAGTGCCACATTTCTGAAT 58.766 40.909 0.00 0.00 0.00 2.57
73 74 2.665165 ACCAAGTGCCACATTTCTGAA 58.335 42.857 0.00 0.00 0.00 3.02
74 75 2.361757 CAACCAAGTGCCACATTTCTGA 59.638 45.455 0.00 0.00 0.00 3.27
75 76 2.101249 ACAACCAAGTGCCACATTTCTG 59.899 45.455 0.00 0.00 0.00 3.02
76 77 2.101249 CACAACCAAGTGCCACATTTCT 59.899 45.455 0.00 0.00 32.04 2.52
77 78 2.100584 TCACAACCAAGTGCCACATTTC 59.899 45.455 0.00 0.00 39.35 2.17
78 79 2.106566 TCACAACCAAGTGCCACATTT 58.893 42.857 0.00 0.00 39.35 2.32
79 80 1.774110 TCACAACCAAGTGCCACATT 58.226 45.000 0.00 0.00 39.35 2.71
80 81 1.999648 ATCACAACCAAGTGCCACAT 58.000 45.000 0.00 0.00 39.35 3.21
81 82 1.774110 AATCACAACCAAGTGCCACA 58.226 45.000 0.00 0.00 39.35 4.17
82 83 2.865551 CAAAATCACAACCAAGTGCCAC 59.134 45.455 0.00 0.00 39.35 5.01
83 84 2.741228 GCAAAATCACAACCAAGTGCCA 60.741 45.455 0.00 0.00 39.35 4.92
84 85 1.866601 GCAAAATCACAACCAAGTGCC 59.133 47.619 0.00 0.00 39.35 5.01
85 86 1.866601 GGCAAAATCACAACCAAGTGC 59.133 47.619 0.00 0.00 39.35 4.40
86 87 2.126467 CGGCAAAATCACAACCAAGTG 58.874 47.619 0.00 0.00 40.85 3.16
87 88 2.028130 TCGGCAAAATCACAACCAAGT 58.972 42.857 0.00 0.00 0.00 3.16
88 89 2.791383 TCGGCAAAATCACAACCAAG 57.209 45.000 0.00 0.00 0.00 3.61
89 90 3.068732 TGAATCGGCAAAATCACAACCAA 59.931 39.130 0.00 0.00 0.00 3.67
90 91 2.625314 TGAATCGGCAAAATCACAACCA 59.375 40.909 0.00 0.00 0.00 3.67
91 92 2.986479 GTGAATCGGCAAAATCACAACC 59.014 45.455 6.96 0.00 41.35 3.77
92 93 3.670055 CAGTGAATCGGCAAAATCACAAC 59.330 43.478 12.48 0.00 43.53 3.32
93 94 3.567585 TCAGTGAATCGGCAAAATCACAA 59.432 39.130 12.48 0.90 43.53 3.33
94 95 3.145286 TCAGTGAATCGGCAAAATCACA 58.855 40.909 12.48 0.00 43.53 3.58
95 96 3.829886 TCAGTGAATCGGCAAAATCAC 57.170 42.857 0.00 4.37 41.88 3.06
96 97 6.150976 ACTTTATCAGTGAATCGGCAAAATCA 59.849 34.615 0.00 0.00 32.83 2.57
97 98 6.555315 ACTTTATCAGTGAATCGGCAAAATC 58.445 36.000 0.00 0.00 32.83 2.17
98 99 6.150976 TGACTTTATCAGTGAATCGGCAAAAT 59.849 34.615 0.00 0.00 35.01 1.82
99 100 5.471797 TGACTTTATCAGTGAATCGGCAAAA 59.528 36.000 0.00 0.00 35.01 2.44
100 101 5.000591 TGACTTTATCAGTGAATCGGCAAA 58.999 37.500 0.00 0.00 35.01 3.68
101 102 4.391830 GTGACTTTATCAGTGAATCGGCAA 59.608 41.667 0.00 0.00 38.28 4.52
102 103 3.932710 GTGACTTTATCAGTGAATCGGCA 59.067 43.478 0.00 0.00 38.28 5.69
103 104 4.184629 AGTGACTTTATCAGTGAATCGGC 58.815 43.478 0.00 0.00 39.69 5.54
104 105 5.957910 GAGTGACTTTATCAGTGAATCGG 57.042 43.478 0.00 0.00 41.36 4.18
106 107 5.411781 ACCGAGTGACTTTATCAGTGAATC 58.588 41.667 0.00 0.00 41.36 2.52
107 108 5.407407 ACCGAGTGACTTTATCAGTGAAT 57.593 39.130 0.00 0.00 41.36 2.57
108 109 4.866508 ACCGAGTGACTTTATCAGTGAA 57.133 40.909 0.00 0.00 41.36 3.18
109 110 5.970317 TTACCGAGTGACTTTATCAGTGA 57.030 39.130 0.00 0.00 41.36 3.41
110 111 5.577164 CCTTTACCGAGTGACTTTATCAGTG 59.423 44.000 0.00 0.00 41.36 3.66
111 112 5.479375 TCCTTTACCGAGTGACTTTATCAGT 59.521 40.000 0.00 0.00 44.18 3.41
112 113 5.962433 TCCTTTACCGAGTGACTTTATCAG 58.038 41.667 0.00 0.00 38.28 2.90
113 114 5.713389 TCTCCTTTACCGAGTGACTTTATCA 59.287 40.000 0.00 0.00 33.79 2.15
114 115 6.127675 ACTCTCCTTTACCGAGTGACTTTATC 60.128 42.308 0.00 0.00 36.70 1.75
115 116 5.715753 ACTCTCCTTTACCGAGTGACTTTAT 59.284 40.000 0.00 0.00 36.70 1.40
116 117 5.075493 ACTCTCCTTTACCGAGTGACTTTA 58.925 41.667 0.00 0.00 36.70 1.85
117 118 3.896272 ACTCTCCTTTACCGAGTGACTTT 59.104 43.478 0.00 0.00 36.70 2.66
118 119 3.498334 ACTCTCCTTTACCGAGTGACTT 58.502 45.455 0.00 0.00 36.70 3.01
119 120 3.157750 ACTCTCCTTTACCGAGTGACT 57.842 47.619 0.00 0.00 36.70 3.41
120 121 3.005578 ACAACTCTCCTTTACCGAGTGAC 59.994 47.826 0.00 0.00 38.00 3.67
121 122 3.228453 ACAACTCTCCTTTACCGAGTGA 58.772 45.455 0.00 0.00 38.00 3.41
122 123 3.662247 ACAACTCTCCTTTACCGAGTG 57.338 47.619 0.00 0.00 38.00 3.51
123 124 3.244112 CCAACAACTCTCCTTTACCGAGT 60.244 47.826 0.00 0.00 39.53 4.18
124 125 3.326747 CCAACAACTCTCCTTTACCGAG 58.673 50.000 0.00 0.00 0.00 4.63
125 126 2.038033 CCCAACAACTCTCCTTTACCGA 59.962 50.000 0.00 0.00 0.00 4.69
126 127 2.423577 CCCAACAACTCTCCTTTACCG 58.576 52.381 0.00 0.00 0.00 4.02
127 128 2.791655 CCCCAACAACTCTCCTTTACC 58.208 52.381 0.00 0.00 0.00 2.85
128 129 2.160205 GCCCCAACAACTCTCCTTTAC 58.840 52.381 0.00 0.00 0.00 2.01
129 130 2.062636 AGCCCCAACAACTCTCCTTTA 58.937 47.619 0.00 0.00 0.00 1.85
130 131 0.853530 AGCCCCAACAACTCTCCTTT 59.146 50.000 0.00 0.00 0.00 3.11
131 132 0.111253 CAGCCCCAACAACTCTCCTT 59.889 55.000 0.00 0.00 0.00 3.36
132 133 1.763770 CAGCCCCAACAACTCTCCT 59.236 57.895 0.00 0.00 0.00 3.69
133 134 1.973812 GCAGCCCCAACAACTCTCC 60.974 63.158 0.00 0.00 0.00 3.71
134 135 0.538287 AAGCAGCCCCAACAACTCTC 60.538 55.000 0.00 0.00 0.00 3.20
135 136 0.825010 CAAGCAGCCCCAACAACTCT 60.825 55.000 0.00 0.00 0.00 3.24
136 137 1.109323 ACAAGCAGCCCCAACAACTC 61.109 55.000 0.00 0.00 0.00 3.01
137 138 0.687427 AACAAGCAGCCCCAACAACT 60.687 50.000 0.00 0.00 0.00 3.16
138 139 0.177836 AAACAAGCAGCCCCAACAAC 59.822 50.000 0.00 0.00 0.00 3.32
139 140 0.463620 GAAACAAGCAGCCCCAACAA 59.536 50.000 0.00 0.00 0.00 2.83
140 141 0.685785 TGAAACAAGCAGCCCCAACA 60.686 50.000 0.00 0.00 0.00 3.33
141 142 0.032540 CTGAAACAAGCAGCCCCAAC 59.967 55.000 0.00 0.00 0.00 3.77
142 143 0.396974 ACTGAAACAAGCAGCCCCAA 60.397 50.000 0.00 0.00 36.86 4.12
143 144 0.396974 AACTGAAACAAGCAGCCCCA 60.397 50.000 0.00 0.00 36.86 4.96
144 145 1.616159 TAACTGAAACAAGCAGCCCC 58.384 50.000 0.00 0.00 36.86 5.80
145 146 2.608016 GCTTAACTGAAACAAGCAGCCC 60.608 50.000 0.89 0.00 43.29 5.19
146 147 2.608016 GGCTTAACTGAAACAAGCAGCC 60.608 50.000 7.73 0.00 45.13 4.85
147 148 2.666026 GGCTTAACTGAAACAAGCAGC 58.334 47.619 7.73 0.00 45.13 5.25
148 149 2.548057 TCGGCTTAACTGAAACAAGCAG 59.452 45.455 7.73 3.95 45.13 4.24
149 150 2.548057 CTCGGCTTAACTGAAACAAGCA 59.452 45.455 7.73 0.00 45.13 3.91
150 151 2.548480 ACTCGGCTTAACTGAAACAAGC 59.452 45.455 0.00 0.00 43.12 4.01
151 152 3.560068 ACACTCGGCTTAACTGAAACAAG 59.440 43.478 0.00 0.00 31.65 3.16
152 153 3.537580 ACACTCGGCTTAACTGAAACAA 58.462 40.909 0.00 0.00 31.65 2.83
153 154 3.188159 ACACTCGGCTTAACTGAAACA 57.812 42.857 0.00 0.00 31.65 2.83
154 155 3.120782 CGTACACTCGGCTTAACTGAAAC 59.879 47.826 0.00 0.00 31.65 2.78
155 156 3.311106 CGTACACTCGGCTTAACTGAAA 58.689 45.455 0.00 0.00 31.65 2.69
156 157 2.923605 GCGTACACTCGGCTTAACTGAA 60.924 50.000 0.00 0.00 31.65 3.02
157 158 1.401931 GCGTACACTCGGCTTAACTGA 60.402 52.381 0.00 0.00 0.00 3.41
158 159 0.989890 GCGTACACTCGGCTTAACTG 59.010 55.000 0.00 0.00 0.00 3.16
159 160 0.886563 AGCGTACACTCGGCTTAACT 59.113 50.000 0.00 0.00 0.00 2.24
160 161 1.135460 AGAGCGTACACTCGGCTTAAC 60.135 52.381 5.28 0.00 41.77 2.01
161 162 1.131883 GAGAGCGTACACTCGGCTTAA 59.868 52.381 5.28 0.00 41.77 1.85
162 163 0.731417 GAGAGCGTACACTCGGCTTA 59.269 55.000 5.28 0.00 41.77 3.09
163 164 1.507174 GAGAGCGTACACTCGGCTT 59.493 57.895 5.28 0.00 41.77 4.35
164 165 3.188965 GAGAGCGTACACTCGGCT 58.811 61.111 5.28 0.00 41.77 5.52
176 177 1.512734 CACGCAAATTGCCGAGAGC 60.513 57.895 12.80 0.00 41.12 4.09
177 178 0.095935 CTCACGCAAATTGCCGAGAG 59.904 55.000 20.87 18.59 40.09 3.20
178 179 0.602638 ACTCACGCAAATTGCCGAGA 60.603 50.000 27.96 18.46 40.09 4.04
179 180 0.238289 AACTCACGCAAATTGCCGAG 59.762 50.000 22.69 22.69 41.12 4.63
180 181 0.665835 AAACTCACGCAAATTGCCGA 59.334 45.000 12.80 8.35 41.12 5.54
181 182 0.777631 CAAACTCACGCAAATTGCCG 59.222 50.000 12.80 10.00 41.12 5.69
182 183 0.508213 GCAAACTCACGCAAATTGCC 59.492 50.000 12.80 0.00 41.12 4.52
183 184 0.508213 GGCAAACTCACGCAAATTGC 59.492 50.000 8.09 8.09 44.18 3.56
184 185 0.777631 CGGCAAACTCACGCAAATTG 59.222 50.000 0.00 0.00 0.00 2.32
185 186 0.665835 TCGGCAAACTCACGCAAATT 59.334 45.000 0.00 0.00 0.00 1.82
186 187 0.238289 CTCGGCAAACTCACGCAAAT 59.762 50.000 0.00 0.00 0.00 2.32
187 188 1.092921 ACTCGGCAAACTCACGCAAA 61.093 50.000 0.00 0.00 0.00 3.68
188 189 1.522806 ACTCGGCAAACTCACGCAA 60.523 52.632 0.00 0.00 0.00 4.85
189 190 2.108157 ACTCGGCAAACTCACGCA 59.892 55.556 0.00 0.00 0.00 5.24
190 191 2.551270 CACTCGGCAAACTCACGC 59.449 61.111 0.00 0.00 0.00 5.34
191 192 2.317609 CCCACTCGGCAAACTCACG 61.318 63.158 0.00 0.00 0.00 4.35
192 193 0.951040 CTCCCACTCGGCAAACTCAC 60.951 60.000 0.00 0.00 0.00 3.51
193 194 1.371183 CTCCCACTCGGCAAACTCA 59.629 57.895 0.00 0.00 0.00 3.41
194 195 2.035442 GCTCCCACTCGGCAAACTC 61.035 63.158 0.00 0.00 0.00 3.01
195 196 2.032681 GCTCCCACTCGGCAAACT 59.967 61.111 0.00 0.00 0.00 2.66
196 197 2.032681 AGCTCCCACTCGGCAAAC 59.967 61.111 0.00 0.00 0.00 2.93
197 198 2.172483 GAGAGCTCCCACTCGGCAAA 62.172 60.000 10.93 0.00 41.77 3.68
198 199 2.604686 AGAGCTCCCACTCGGCAA 60.605 61.111 10.93 0.00 41.77 4.52
199 200 3.071206 GAGAGCTCCCACTCGGCA 61.071 66.667 10.93 0.00 41.77 5.69
203 204 2.172483 TTTGCCGAGAGCTCCCACTC 62.172 60.000 10.93 0.00 44.23 3.51
204 205 2.177594 CTTTGCCGAGAGCTCCCACT 62.178 60.000 10.93 0.00 44.23 4.00
205 206 1.743252 CTTTGCCGAGAGCTCCCAC 60.743 63.158 10.93 1.42 44.23 4.61
206 207 1.913262 TCTTTGCCGAGAGCTCCCA 60.913 57.895 10.93 0.00 44.23 4.37
207 208 1.448717 GTCTTTGCCGAGAGCTCCC 60.449 63.158 10.93 0.00 44.23 4.30
208 209 0.036858 AAGTCTTTGCCGAGAGCTCC 60.037 55.000 10.93 0.68 44.23 4.70
209 210 1.074752 CAAGTCTTTGCCGAGAGCTC 58.925 55.000 5.27 5.27 44.23 4.09
210 211 0.681733 TCAAGTCTTTGCCGAGAGCT 59.318 50.000 0.00 0.00 44.23 4.09
211 212 1.396301 CATCAAGTCTTTGCCGAGAGC 59.604 52.381 0.00 0.00 44.14 4.09
212 213 2.005451 CCATCAAGTCTTTGCCGAGAG 58.995 52.381 0.00 0.00 34.21 3.20
213 214 1.623311 TCCATCAAGTCTTTGCCGAGA 59.377 47.619 0.00 0.00 34.21 4.04
214 215 2.099141 TCCATCAAGTCTTTGCCGAG 57.901 50.000 0.00 0.00 34.21 4.63
215 216 2.151202 GTTCCATCAAGTCTTTGCCGA 58.849 47.619 0.00 0.00 34.21 5.54
216 217 1.200020 GGTTCCATCAAGTCTTTGCCG 59.800 52.381 0.00 0.00 34.21 5.69
217 218 2.229784 CTGGTTCCATCAAGTCTTTGCC 59.770 50.000 0.00 0.00 34.21 4.52
218 219 2.352127 GCTGGTTCCATCAAGTCTTTGC 60.352 50.000 0.00 0.00 34.21 3.68
219 220 2.095567 CGCTGGTTCCATCAAGTCTTTG 60.096 50.000 0.00 0.00 35.57 2.77
220 221 2.154462 CGCTGGTTCCATCAAGTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
221 222 1.072331 ACGCTGGTTCCATCAAGTCTT 59.928 47.619 0.00 0.00 0.00 3.01
222 223 0.687354 ACGCTGGTTCCATCAAGTCT 59.313 50.000 0.00 0.00 0.00 3.24
223 224 1.079503 GACGCTGGTTCCATCAAGTC 58.920 55.000 0.00 0.00 0.00 3.01
224 225 0.396435 TGACGCTGGTTCCATCAAGT 59.604 50.000 0.00 0.00 0.00 3.16
225 226 1.081892 CTGACGCTGGTTCCATCAAG 58.918 55.000 0.00 0.00 0.00 3.02
226 227 0.396435 ACTGACGCTGGTTCCATCAA 59.604 50.000 0.00 0.00 0.00 2.57
227 228 0.320683 CACTGACGCTGGTTCCATCA 60.321 55.000 0.00 0.00 0.00 3.07
228 229 0.037326 TCACTGACGCTGGTTCCATC 60.037 55.000 0.00 0.00 0.00 3.51
229 230 0.396435 TTCACTGACGCTGGTTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
230 231 0.249868 CTTCACTGACGCTGGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
231 232 0.249911 ACTTCACTGACGCTGGTTCC 60.250 55.000 0.00 0.00 0.00 3.62
232 233 1.140816 GACTTCACTGACGCTGGTTC 58.859 55.000 0.00 0.00 0.00 3.62
233 234 0.464036 TGACTTCACTGACGCTGGTT 59.536 50.000 0.00 0.00 0.00 3.67
234 235 0.249489 GTGACTTCACTGACGCTGGT 60.249 55.000 1.92 0.00 43.25 4.00
235 236 2.522060 GTGACTTCACTGACGCTGG 58.478 57.895 1.92 0.00 43.25 4.85
240 241 7.995224 TTGACAAACAAAAGTGACTTCACTGAC 60.995 37.037 12.62 1.33 44.13 3.51
241 242 6.016693 TTGACAAACAAAAGTGACTTCACTGA 60.017 34.615 12.62 0.00 44.13 3.41
242 243 6.148948 TTGACAAACAAAAGTGACTTCACTG 58.851 36.000 12.62 4.34 44.13 3.66
243 244 6.206634 TCTTGACAAACAAAAGTGACTTCACT 59.793 34.615 6.04 6.04 44.76 3.41
244 245 6.378582 TCTTGACAAACAAAAGTGACTTCAC 58.621 36.000 0.00 0.77 41.29 3.18
245 246 6.567687 TCTTGACAAACAAAAGTGACTTCA 57.432 33.333 0.00 0.00 38.08 3.02
246 247 6.020360 GCATCTTGACAAACAAAAGTGACTTC 60.020 38.462 0.00 0.00 38.08 3.01
247 248 5.807011 GCATCTTGACAAACAAAAGTGACTT 59.193 36.000 0.00 0.00 38.08 3.01
248 249 5.105797 TGCATCTTGACAAACAAAAGTGACT 60.106 36.000 0.00 0.00 38.08 3.41
249 250 5.101628 TGCATCTTGACAAACAAAAGTGAC 58.898 37.500 0.00 0.00 38.08 3.67
250 251 5.321959 TGCATCTTGACAAACAAAAGTGA 57.678 34.783 0.00 0.00 38.08 3.41
251 252 6.036300 ACATTGCATCTTGACAAACAAAAGTG 59.964 34.615 0.00 0.00 38.08 3.16
252 253 6.108015 ACATTGCATCTTGACAAACAAAAGT 58.892 32.000 0.00 0.00 38.08 2.66
253 254 6.592798 ACATTGCATCTTGACAAACAAAAG 57.407 33.333 0.00 0.00 38.08 2.27
254 255 6.981762 AACATTGCATCTTGACAAACAAAA 57.018 29.167 0.00 0.00 38.08 2.44
255 256 6.183360 CCAAACATTGCATCTTGACAAACAAA 60.183 34.615 0.00 0.00 38.08 2.83
256 257 5.293814 CCAAACATTGCATCTTGACAAACAA 59.706 36.000 0.00 0.00 36.97 2.83
257 258 4.809958 CCAAACATTGCATCTTGACAAACA 59.190 37.500 0.00 0.00 0.00 2.83
258 259 4.318974 GCCAAACATTGCATCTTGACAAAC 60.319 41.667 0.00 0.00 0.00 2.93
259 260 3.808726 GCCAAACATTGCATCTTGACAAA 59.191 39.130 0.00 0.00 0.00 2.83
260 261 3.069872 AGCCAAACATTGCATCTTGACAA 59.930 39.130 0.00 0.00 0.00 3.18
261 262 2.629137 AGCCAAACATTGCATCTTGACA 59.371 40.909 0.00 0.00 0.00 3.58
262 263 3.057033 AGAGCCAAACATTGCATCTTGAC 60.057 43.478 0.00 0.00 0.00 3.18
263 264 3.159472 AGAGCCAAACATTGCATCTTGA 58.841 40.909 0.00 0.00 0.00 3.02
264 265 3.508762 GAGAGCCAAACATTGCATCTTG 58.491 45.455 0.00 0.00 0.00 3.02
265 266 2.163010 CGAGAGCCAAACATTGCATCTT 59.837 45.455 0.00 0.00 0.00 2.40
266 267 1.741706 CGAGAGCCAAACATTGCATCT 59.258 47.619 0.00 0.00 0.00 2.90
267 268 2.184385 CGAGAGCCAAACATTGCATC 57.816 50.000 0.00 0.00 0.00 3.91
281 282 3.114809 CTCAGCATAGAGTTTGCGAGAG 58.885 50.000 10.04 8.42 44.82 3.20
282 283 2.493675 ACTCAGCATAGAGTTTGCGAGA 59.506 45.455 17.66 8.32 46.26 4.04
283 284 2.602211 CACTCAGCATAGAGTTTGCGAG 59.398 50.000 4.03 12.51 46.26 5.03
284 285 2.610433 CACTCAGCATAGAGTTTGCGA 58.390 47.619 4.03 0.00 46.26 5.10
285 286 1.061711 GCACTCAGCATAGAGTTTGCG 59.938 52.381 4.03 0.00 46.26 4.85
286 287 1.399791 GGCACTCAGCATAGAGTTTGC 59.600 52.381 4.03 6.00 46.26 3.68
287 288 2.012673 GGGCACTCAGCATAGAGTTTG 58.987 52.381 4.03 0.00 46.26 2.93
288 289 1.406069 CGGGCACTCAGCATAGAGTTT 60.406 52.381 4.03 0.00 46.26 2.66
289 290 0.176680 CGGGCACTCAGCATAGAGTT 59.823 55.000 4.03 0.00 46.26 3.01
297 298 4.681978 AACCGTCGGGCACTCAGC 62.682 66.667 17.28 0.00 44.65 4.26
298 299 2.738521 CAACCGTCGGGCACTCAG 60.739 66.667 17.28 0.00 36.48 3.35
299 300 4.308458 CCAACCGTCGGGCACTCA 62.308 66.667 17.28 0.00 36.48 3.41
300 301 3.819877 AACCAACCGTCGGGCACTC 62.820 63.158 17.28 0.00 36.48 3.51
301 302 3.819877 GAACCAACCGTCGGGCACT 62.820 63.158 17.28 0.00 36.48 4.40
302 303 3.351416 GAACCAACCGTCGGGCAC 61.351 66.667 17.28 0.00 36.48 5.01
303 304 3.862991 TGAACCAACCGTCGGGCA 61.863 61.111 17.28 0.86 36.48 5.36
304 305 3.351416 GTGAACCAACCGTCGGGC 61.351 66.667 17.28 0.00 36.48 6.13
305 306 3.039588 CGTGAACCAACCGTCGGG 61.040 66.667 17.28 0.00 40.11 5.14
306 307 2.419057 TACCGTGAACCAACCGTCGG 62.419 60.000 10.48 10.48 42.94 4.79
307 308 0.597118 TTACCGTGAACCAACCGTCG 60.597 55.000 0.00 0.00 0.00 5.12
308 309 1.528161 CTTTACCGTGAACCAACCGTC 59.472 52.381 0.00 0.00 0.00 4.79
309 310 1.134431 ACTTTACCGTGAACCAACCGT 60.134 47.619 0.00 0.00 0.00 4.83
310 311 1.585297 ACTTTACCGTGAACCAACCG 58.415 50.000 0.00 0.00 0.00 4.44
311 312 3.208594 AGAACTTTACCGTGAACCAACC 58.791 45.455 0.00 0.00 0.00 3.77
312 313 6.549912 AATAGAACTTTACCGTGAACCAAC 57.450 37.500 0.00 0.00 0.00 3.77
313 314 6.513720 GCAAATAGAACTTTACCGTGAACCAA 60.514 38.462 0.00 0.00 0.00 3.67
314 315 5.049267 GCAAATAGAACTTTACCGTGAACCA 60.049 40.000 0.00 0.00 0.00 3.67
315 316 5.388111 GCAAATAGAACTTTACCGTGAACC 58.612 41.667 0.00 0.00 0.00 3.62
316 317 5.180680 AGGCAAATAGAACTTTACCGTGAAC 59.819 40.000 0.00 0.00 28.54 3.18
317 318 5.180492 CAGGCAAATAGAACTTTACCGTGAA 59.820 40.000 0.00 0.00 28.54 3.18
318 319 4.693566 CAGGCAAATAGAACTTTACCGTGA 59.306 41.667 0.00 0.00 28.54 4.35
319 320 4.693566 TCAGGCAAATAGAACTTTACCGTG 59.306 41.667 0.00 0.00 28.54 4.94
320 321 4.901868 TCAGGCAAATAGAACTTTACCGT 58.098 39.130 0.00 0.00 28.54 4.83
321 322 5.873179 TTCAGGCAAATAGAACTTTACCG 57.127 39.130 0.00 0.00 28.54 4.02
322 323 6.208797 ACCTTTCAGGCAAATAGAACTTTACC 59.791 38.462 0.00 0.00 39.63 2.85
323 324 7.084486 CACCTTTCAGGCAAATAGAACTTTAC 58.916 38.462 0.00 0.00 39.63 2.01
324 325 6.775629 ACACCTTTCAGGCAAATAGAACTTTA 59.224 34.615 0.00 0.00 39.63 1.85
325 326 5.598417 ACACCTTTCAGGCAAATAGAACTTT 59.402 36.000 0.00 0.00 39.63 2.66
326 327 5.140454 ACACCTTTCAGGCAAATAGAACTT 58.860 37.500 0.00 0.00 39.63 2.66
327 328 4.729868 ACACCTTTCAGGCAAATAGAACT 58.270 39.130 0.00 0.00 39.63 3.01
328 329 5.472137 TGTACACCTTTCAGGCAAATAGAAC 59.528 40.000 0.00 0.00 39.63 3.01
329 330 5.472137 GTGTACACCTTTCAGGCAAATAGAA 59.528 40.000 15.42 0.00 39.63 2.10
330 331 5.001232 GTGTACACCTTTCAGGCAAATAGA 58.999 41.667 15.42 0.00 39.63 1.98
331 332 5.296813 GTGTACACCTTTCAGGCAAATAG 57.703 43.478 15.42 0.00 39.63 1.73
346 347 2.680577 CAAAGACTACCCGGTGTACAC 58.319 52.381 18.01 18.01 0.00 2.90
347 348 1.001181 GCAAAGACTACCCGGTGTACA 59.999 52.381 0.00 0.00 0.00 2.90
348 349 1.274447 AGCAAAGACTACCCGGTGTAC 59.726 52.381 0.00 0.00 0.00 2.90
349 350 1.636148 AGCAAAGACTACCCGGTGTA 58.364 50.000 0.00 1.33 0.00 2.90
350 351 1.636148 TAGCAAAGACTACCCGGTGT 58.364 50.000 0.00 0.00 0.00 4.16
351 352 2.232941 TCTTAGCAAAGACTACCCGGTG 59.767 50.000 0.00 0.00 36.80 4.94
352 353 2.532843 TCTTAGCAAAGACTACCCGGT 58.467 47.619 0.00 0.00 36.80 5.28
353 354 3.259902 GTTCTTAGCAAAGACTACCCGG 58.740 50.000 0.00 0.00 41.48 5.73
354 355 3.921677 TGTTCTTAGCAAAGACTACCCG 58.078 45.455 0.00 0.00 41.48 5.28
355 356 6.655425 AGAATTGTTCTTAGCAAAGACTACCC 59.345 38.462 0.00 0.00 41.48 3.69
356 357 7.674471 AGAATTGTTCTTAGCAAAGACTACC 57.326 36.000 0.00 0.00 41.48 3.18
370 371 6.072452 GCTAGTACTTTGCCAAGAATTGTTCT 60.072 38.462 0.00 0.00 46.99 3.01
371 372 6.086871 GCTAGTACTTTGCCAAGAATTGTTC 58.913 40.000 0.00 0.00 46.99 3.18
372 373 5.048013 GGCTAGTACTTTGCCAAGAATTGTT 60.048 40.000 25.40 0.00 46.99 2.83
373 374 4.459337 GGCTAGTACTTTGCCAAGAATTGT 59.541 41.667 25.40 0.00 46.99 2.71
375 376 3.689649 CGGCTAGTACTTTGCCAAGAATT 59.310 43.478 27.77 0.00 46.39 2.17
376 377 3.055385 TCGGCTAGTACTTTGCCAAGAAT 60.055 43.478 27.77 0.00 46.39 2.40
377 378 2.300723 TCGGCTAGTACTTTGCCAAGAA 59.699 45.455 27.77 14.26 46.39 2.52
378 379 1.897133 TCGGCTAGTACTTTGCCAAGA 59.103 47.619 27.77 19.30 46.39 3.02
379 380 2.271800 CTCGGCTAGTACTTTGCCAAG 58.728 52.381 27.77 20.33 46.39 3.61
380 381 1.621814 ACTCGGCTAGTACTTTGCCAA 59.378 47.619 27.77 16.31 46.39 4.52
381 382 1.263356 ACTCGGCTAGTACTTTGCCA 58.737 50.000 27.77 18.31 46.39 4.92
382 383 2.381725 AACTCGGCTAGTACTTTGCC 57.618 50.000 22.34 22.34 37.50 4.52
383 384 6.248631 CAAATAAACTCGGCTAGTACTTTGC 58.751 40.000 0.00 6.35 37.50 3.68
384 385 6.674760 GCCAAATAAACTCGGCTAGTACTTTG 60.675 42.308 0.00 11.07 41.50 2.77
385 386 5.353400 GCCAAATAAACTCGGCTAGTACTTT 59.647 40.000 0.00 0.00 41.50 2.66
386 387 4.874396 GCCAAATAAACTCGGCTAGTACTT 59.126 41.667 0.00 0.00 41.50 2.24
387 388 4.439968 GCCAAATAAACTCGGCTAGTACT 58.560 43.478 0.00 0.00 41.50 2.73
388 389 3.558829 GGCCAAATAAACTCGGCTAGTAC 59.441 47.826 0.00 0.00 44.27 2.73
389 390 3.432608 GGGCCAAATAAACTCGGCTAGTA 60.433 47.826 4.39 0.00 44.27 1.82
390 391 2.640184 GGCCAAATAAACTCGGCTAGT 58.360 47.619 0.00 0.00 44.27 2.57
391 392 1.947456 GGGCCAAATAAACTCGGCTAG 59.053 52.381 4.39 0.00 44.27 3.42
392 393 1.562475 AGGGCCAAATAAACTCGGCTA 59.438 47.619 6.18 0.00 44.27 3.93
393 394 0.331616 AGGGCCAAATAAACTCGGCT 59.668 50.000 6.18 0.00 44.27 5.52
394 395 1.182667 AAGGGCCAAATAAACTCGGC 58.817 50.000 6.18 0.00 44.10 5.54
395 396 2.673893 GCAAAGGGCCAAATAAACTCGG 60.674 50.000 6.18 0.00 36.11 4.63
396 397 2.231235 AGCAAAGGGCCAAATAAACTCG 59.769 45.455 6.18 0.00 46.50 4.18
397 398 3.588955 CAGCAAAGGGCCAAATAAACTC 58.411 45.455 6.18 0.00 46.50 3.01
398 399 2.302733 CCAGCAAAGGGCCAAATAAACT 59.697 45.455 6.18 0.00 46.50 2.66
399 400 2.615240 CCCAGCAAAGGGCCAAATAAAC 60.615 50.000 6.18 0.00 46.50 2.01
400 401 1.627834 CCCAGCAAAGGGCCAAATAAA 59.372 47.619 6.18 0.00 46.50 1.40
401 402 1.274712 CCCAGCAAAGGGCCAAATAA 58.725 50.000 6.18 0.00 46.50 1.40
402 403 2.989480 CCCAGCAAAGGGCCAAATA 58.011 52.632 6.18 0.00 46.50 1.40
403 404 3.810255 CCCAGCAAAGGGCCAAAT 58.190 55.556 6.18 0.00 46.50 2.32
410 411 0.675633 CAGAAACACCCCAGCAAAGG 59.324 55.000 0.00 0.00 0.00 3.11
411 412 0.675633 CCAGAAACACCCCAGCAAAG 59.324 55.000 0.00 0.00 0.00 2.77
412 413 1.398958 GCCAGAAACACCCCAGCAAA 61.399 55.000 0.00 0.00 0.00 3.68
413 414 1.832167 GCCAGAAACACCCCAGCAA 60.832 57.895 0.00 0.00 0.00 3.91
414 415 2.203480 GCCAGAAACACCCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
415 416 2.203480 TGCCAGAAACACCCCAGC 60.203 61.111 0.00 0.00 0.00 4.85
416 417 0.890996 GAGTGCCAGAAACACCCCAG 60.891 60.000 0.00 0.00 38.87 4.45
417 418 1.150536 GAGTGCCAGAAACACCCCA 59.849 57.895 0.00 0.00 38.87 4.96
418 419 1.966451 CGAGTGCCAGAAACACCCC 60.966 63.158 0.00 0.00 38.87 4.95
419 420 1.966451 CCGAGTGCCAGAAACACCC 60.966 63.158 0.00 0.00 38.87 4.61
420 421 2.617274 GCCGAGTGCCAGAAACACC 61.617 63.158 0.00 0.00 38.87 4.16
421 422 2.946762 GCCGAGTGCCAGAAACAC 59.053 61.111 0.00 0.00 38.35 3.32
422 423 2.089887 TACGCCGAGTGCCAGAAACA 62.090 55.000 0.00 0.00 36.24 2.83
423 424 1.352156 CTACGCCGAGTGCCAGAAAC 61.352 60.000 0.00 0.00 36.24 2.78
424 425 1.080093 CTACGCCGAGTGCCAGAAA 60.080 57.895 0.00 0.00 36.24 2.52
425 426 2.273179 ACTACGCCGAGTGCCAGAA 61.273 57.895 0.00 0.00 36.24 3.02
426 427 2.675423 ACTACGCCGAGTGCCAGA 60.675 61.111 0.00 0.00 36.24 3.86
427 428 2.507102 CACTACGCCGAGTGCCAG 60.507 66.667 0.00 0.00 40.42 4.85
432 433 2.334838 GAATTTCACACTACGCCGAGT 58.665 47.619 0.00 0.00 0.00 4.18
433 434 1.659098 GGAATTTCACACTACGCCGAG 59.341 52.381 0.00 0.00 0.00 4.63
434 435 1.001068 TGGAATTTCACACTACGCCGA 59.999 47.619 0.00 0.00 0.00 5.54
435 436 1.393539 CTGGAATTTCACACTACGCCG 59.606 52.381 0.00 0.00 0.00 6.46
436 437 2.423577 ACTGGAATTTCACACTACGCC 58.576 47.619 0.00 0.00 0.00 5.68
437 438 4.243270 ACTACTGGAATTTCACACTACGC 58.757 43.478 0.00 0.00 0.00 4.42
438 439 6.780706 AAACTACTGGAATTTCACACTACG 57.219 37.500 0.00 0.00 0.00 3.51
441 442 9.959721 ACATATAAACTACTGGAATTTCACACT 57.040 29.630 0.00 0.00 0.00 3.55
531 532 7.781056 TGTCATGTATGAGCTAACACTATTCA 58.219 34.615 0.00 0.00 37.51 2.57
1310 1346 6.874278 TCAGAAGATCAATTAGTCTCCCAA 57.126 37.500 0.00 0.00 0.00 4.12
1522 1562 3.680490 TCCCGCAAGAAATGTGTATCAA 58.320 40.909 0.00 0.00 37.87 2.57
1570 1619 1.299976 CCCAGACTACCACTTGCCC 59.700 63.158 0.00 0.00 0.00 5.36
1572 1621 0.321653 CCACCCAGACTACCACTTGC 60.322 60.000 0.00 0.00 0.00 4.01
1582 1631 1.066787 GTGCTTAGACTCCACCCAGAC 60.067 57.143 0.00 0.00 0.00 3.51
1584 1633 0.976641 TGTGCTTAGACTCCACCCAG 59.023 55.000 0.00 0.00 0.00 4.45
1651 1700 6.533730 ACTCACAAAATACAACATCAGGAGA 58.466 36.000 0.00 0.00 0.00 3.71
1658 1707 6.772716 ACTCTGGAACTCACAAAATACAACAT 59.227 34.615 0.00 0.00 0.00 2.71
1667 1716 3.278574 CACCAACTCTGGAACTCACAAA 58.721 45.455 0.00 0.00 46.92 2.83
1690 1739 3.777106 ATTGCTTCAGACAAGAGACCA 57.223 42.857 0.00 0.00 0.00 4.02
1692 1741 6.163159 CAGTAATTGCTTCAGACAAGAGAC 57.837 41.667 0.00 0.00 0.00 3.36
1717 1766 0.673644 CAACCTCCAACCCAGTAGCG 60.674 60.000 0.00 0.00 0.00 4.26
1752 1801 8.737168 TTCTCTTCTCTCTTTCATTGTTTTCA 57.263 30.769 0.00 0.00 0.00 2.69
1797 1846 5.836024 AACAACAACAGATACTTCCCCTA 57.164 39.130 0.00 0.00 0.00 3.53
1855 1904 9.814899 TCAAACAAAATCACATGATGTACTTTT 57.185 25.926 0.00 4.75 34.49 2.27
1867 1916 4.397481 TGGCATGTCAAACAAAATCACA 57.603 36.364 0.00 0.00 0.00 3.58
1952 2001 6.881065 TCCTTCTCATTCACAAAGACAATAGG 59.119 38.462 0.00 0.00 0.00 2.57
1973 2022 5.644206 GCTCTCTAAAAAGTTTCCGATCCTT 59.356 40.000 0.00 0.00 0.00 3.36
2037 2086 7.944554 TGGTGAATTTTGAATTAGAGAGTTCCT 59.055 33.333 0.00 0.00 0.00 3.36
2094 2152 2.290577 GGTCAAGAAGGTGGCAGAGAAT 60.291 50.000 0.00 0.00 0.00 2.40
2102 2160 1.171308 CATGCTGGTCAAGAAGGTGG 58.829 55.000 0.00 0.00 0.00 4.61
2125 2183 0.251787 AAATTGACCACCTCCCTGGC 60.252 55.000 0.00 0.00 40.22 4.85
2130 2188 6.434340 ACATCTTAAGAAAATTGACCACCTCC 59.566 38.462 9.71 0.00 0.00 4.30
2196 2254 7.397892 TTGGTTGAGTGATACAAGTTTTTCA 57.602 32.000 0.00 0.00 0.00 2.69
2210 2269 5.766150 TGTAAGGACATTTTGGTTGAGTG 57.234 39.130 0.00 0.00 0.00 3.51
2217 2276 7.395190 TCTGATGATTGTAAGGACATTTTGG 57.605 36.000 0.00 0.00 34.86 3.28
2260 2319 2.602676 GCTTGGGGCTGGTCCTGTA 61.603 63.158 0.00 0.00 38.06 2.74
2297 2356 1.394917 AGCGCATTTTGCTAGAACTCG 59.605 47.619 11.47 0.00 42.25 4.18
2312 2371 4.386867 AAGCTAGTGATAGTTTAGCGCA 57.613 40.909 11.47 0.00 43.43 6.09
2313 2372 7.409465 AATAAAGCTAGTGATAGTTTAGCGC 57.591 36.000 0.00 0.00 43.43 5.92
2343 2402 7.602517 ACTTGCATTACTCATGTTTCTAGTC 57.397 36.000 0.00 0.00 34.98 2.59
2344 2403 7.986085 AACTTGCATTACTCATGTTTCTAGT 57.014 32.000 0.00 0.00 34.98 2.57
2454 2513 1.632409 AGCTGGATTCTCTTGAGGCAA 59.368 47.619 0.00 0.00 0.00 4.52
2484 2543 0.389817 TCAACGCAGTGATCTTCCGG 60.390 55.000 0.00 0.00 45.00 5.14
2517 2576 2.897271 TTGTGCATGTATGGAAGGGT 57.103 45.000 0.00 0.00 0.00 4.34
2612 2676 3.559069 CTGGTGTTGGGATGATTATGCT 58.441 45.455 0.00 0.00 0.00 3.79
2627 2691 1.045407 TTTCCACGAGTAGCTGGTGT 58.955 50.000 0.00 0.00 38.27 4.16
2638 2702 1.974265 TGGCTCATTTGTTTCCACGA 58.026 45.000 0.00 0.00 0.00 4.35
2778 2844 2.032860 CTGAATCCCCACGCGGATCT 62.033 60.000 12.47 0.00 42.05 2.75
2901 2967 9.512588 GATGGTACTGATGATATTTTGAAGGAT 57.487 33.333 0.00 0.00 0.00 3.24
3066 3132 5.425862 AGGAAGAAGATAACTACCACCCTTC 59.574 44.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.