Multiple sequence alignment - TraesCS1D01G025100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G025100 chr1D 100.000 3801 0 0 1 3801 10401441 10397641 0.000000e+00 7020.0
1 TraesCS1D01G025100 chr1D 81.905 630 79 19 1950 2561 10538586 10539198 2.040000e-137 499.0
2 TraesCS1D01G025100 chr1D 81.818 429 44 16 1950 2366 10442621 10443027 2.830000e-86 329.0
3 TraesCS1D01G025100 chr1D 100.000 31 0 0 1868 1898 10538423 10538453 1.470000e-04 58.4
4 TraesCS1D01G025100 chr1D 100.000 30 0 0 1869 1898 10442451 10442480 5.300000e-04 56.5
5 TraesCS1D01G025100 chr1A 93.875 947 35 8 1928 2873 12143384 12142460 0.000000e+00 1406.0
6 TraesCS1D01G025100 chr1A 85.827 889 64 30 828 1671 12144666 12143795 0.000000e+00 887.0
7 TraesCS1D01G025100 chr1A 90.411 365 22 6 3134 3491 12142207 12141849 5.750000e-128 468.0
8 TraesCS1D01G025100 chr1A 94.211 190 8 3 3601 3788 12141846 12141658 1.730000e-73 287.0
9 TraesCS1D01G025100 chr1A 81.106 217 16 5 2905 3117 12142459 12142264 2.370000e-32 150.0
10 TraesCS1D01G025100 chr1B 89.304 1150 76 25 1934 3078 15440263 15439156 0.000000e+00 1399.0
11 TraesCS1D01G025100 chr1B 85.872 906 58 23 768 1622 15442099 15441213 0.000000e+00 900.0
12 TraesCS1D01G025100 chr1B 96.597 382 13 0 2499 2880 15383492 15383111 5.360000e-178 634.0
13 TraesCS1D01G025100 chr1B 96.597 382 13 0 2499 2880 15389483 15389102 5.360000e-178 634.0
14 TraesCS1D01G025100 chr1B 82.615 650 60 29 3128 3762 15382490 15381879 3.360000e-145 525.0
15 TraesCS1D01G025100 chr1B 82.615 650 60 29 3128 3762 15388481 15387870 3.360000e-145 525.0
16 TraesCS1D01G025100 chr1B 84.937 478 45 7 2 453 15443021 15442545 3.460000e-125 459.0
17 TraesCS1D01G025100 chr1B 87.267 322 30 8 420 741 15442535 15442225 1.300000e-94 357.0
18 TraesCS1D01G025100 chr1B 88.839 224 19 5 2019 2242 15383707 15383490 1.740000e-68 270.0
19 TraesCS1D01G025100 chr1B 88.839 224 19 5 2019 2242 15389698 15389481 1.740000e-68 270.0
20 TraesCS1D01G025100 chr1B 78.313 332 31 7 2789 3117 15382837 15382544 3.900000e-40 176.0
21 TraesCS1D01G025100 chr1B 78.313 332 31 7 2789 3117 15388828 15388535 3.900000e-40 176.0
22 TraesCS1D01G025100 chr1B 86.061 165 15 4 3516 3677 15438542 15438383 1.820000e-38 171.0
23 TraesCS1D01G025100 chr1B 87.356 87 7 1 2930 3016 15439146 15439064 3.130000e-16 97.1
24 TraesCS1D01G025100 chr1B 90.196 51 5 0 1956 2006 15440405 15440355 2.450000e-07 67.6
25 TraesCS1D01G025100 chr2D 80.374 856 133 21 1933 2778 539223638 539224468 5.390000e-173 617.0
26 TraesCS1D01G025100 chr2B 80.867 784 125 11 1997 2774 643089523 643090287 9.090000e-166 593.0
27 TraesCS1D01G025100 chr2A 83.369 463 59 10 2326 2778 682490218 682490672 2.730000e-111 412.0
28 TraesCS1D01G025100 chr2A 81.905 315 47 7 1933 2247 682489737 682490041 1.350000e-64 257.0
29 TraesCS1D01G025100 chr5A 85.714 91 10 2 3439 3529 649199383 649199470 4.040000e-15 93.5
30 TraesCS1D01G025100 chr7D 100.000 28 0 0 3501 3528 355858823 355858796 7.000000e-03 52.8
31 TraesCS1D01G025100 chr6D 100.000 28 0 0 3501 3528 148711319 148711292 7.000000e-03 52.8
32 TraesCS1D01G025100 chr6B 100.000 28 0 0 3501 3528 220490659 220490686 7.000000e-03 52.8
33 TraesCS1D01G025100 chr5B 100.000 28 0 0 3501 3528 206332750 206332777 7.000000e-03 52.8
34 TraesCS1D01G025100 chr4D 100.000 28 0 0 3501 3528 15944781 15944754 7.000000e-03 52.8
35 TraesCS1D01G025100 chr3D 100.000 28 0 0 3501 3528 106446255 106446282 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G025100 chr1D 10397641 10401441 3800 True 7020.000000 7020 100.000000 1 3801 1 chr1D.!!$R1 3800
1 TraesCS1D01G025100 chr1D 10538423 10539198 775 False 278.700000 499 90.952500 1868 2561 2 chr1D.!!$F2 693
2 TraesCS1D01G025100 chr1A 12141658 12144666 3008 True 639.600000 1406 89.086000 828 3788 5 chr1A.!!$R1 2960
3 TraesCS1D01G025100 chr1B 15438383 15443021 4638 True 492.957143 1399 87.284714 2 3677 7 chr1B.!!$R3 3675
4 TraesCS1D01G025100 chr1B 15381879 15383707 1828 True 401.250000 634 86.591000 2019 3762 4 chr1B.!!$R1 1743
5 TraesCS1D01G025100 chr1B 15387870 15389698 1828 True 401.250000 634 86.591000 2019 3762 4 chr1B.!!$R2 1743
6 TraesCS1D01G025100 chr2D 539223638 539224468 830 False 617.000000 617 80.374000 1933 2778 1 chr2D.!!$F1 845
7 TraesCS1D01G025100 chr2B 643089523 643090287 764 False 593.000000 593 80.867000 1997 2774 1 chr2B.!!$F1 777
8 TraesCS1D01G025100 chr2A 682489737 682490672 935 False 334.500000 412 82.637000 1933 2778 2 chr2A.!!$F1 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 817 0.394352 CTAGGGTTTGCCTTGCCGAT 60.394 55.0 0.00 0.00 34.45 4.18 F
1229 1424 0.401738 AATGCTGTAGGTGCACCACT 59.598 50.0 36.39 20.32 43.59 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 2150 0.036164 ATTACTTGACACGGCTGCCA 59.964 50.0 20.29 0.0 0.00 4.92 R
3118 4949 0.470766 TGGTTTACCTCGCAACCAGT 59.529 50.0 0.16 0.0 46.16 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.530288 ACGCGAAAATGGGAAATGGG 59.470 50.000 15.93 0.00 0.00 4.00
30 31 2.175202 CGAAAATGGGAAATGGGTGGA 58.825 47.619 0.00 0.00 0.00 4.02
31 32 2.094234 CGAAAATGGGAAATGGGTGGAC 60.094 50.000 0.00 0.00 0.00 4.02
32 33 1.555967 AAATGGGAAATGGGTGGACG 58.444 50.000 0.00 0.00 0.00 4.79
60 61 8.160106 GGATATGGTCATAGATTTGAAAGAGGT 58.840 37.037 0.00 0.00 0.00 3.85
64 65 7.004086 TGGTCATAGATTTGAAAGAGGTTTGT 58.996 34.615 0.00 0.00 0.00 2.83
72 73 2.092861 TGAAAGAGGTTTGTCCGTCCAA 60.093 45.455 0.00 0.00 41.99 3.53
77 78 2.592287 TTTGTCCGTCCAACCCGC 60.592 61.111 0.00 0.00 0.00 6.13
91 92 2.908940 CCGCCCTCATTGCCATCC 60.909 66.667 0.00 0.00 0.00 3.51
94 95 3.282157 CCCTCATTGCCATCCGCG 61.282 66.667 0.00 0.00 42.08 6.46
139 140 2.168521 ACCCTCATTGTCGTCATAGGTG 59.831 50.000 5.82 1.90 0.00 4.00
147 148 1.045407 TCGTCATAGGTGGCCATACC 58.955 55.000 9.72 6.47 41.17 2.73
153 154 4.657952 GGTGGCCATACCTGAACC 57.342 61.111 9.72 0.00 40.22 3.62
167 168 0.981183 TGAACCGAGCCAGTAATGGT 59.019 50.000 11.48 0.00 33.45 3.55
177 178 2.124445 GTAATGGTCCGGCCCACC 60.124 66.667 6.24 4.79 37.31 4.61
179 180 3.954740 TAATGGTCCGGCCCACCCT 62.955 63.158 6.24 0.00 37.31 4.34
183 184 3.155167 GTCCGGCCCACCCTAGAG 61.155 72.222 0.00 0.00 0.00 2.43
193 194 1.412710 CCACCCTAGAGCGCTCATTTA 59.587 52.381 36.87 20.59 0.00 1.40
194 195 2.546795 CCACCCTAGAGCGCTCATTTAG 60.547 54.545 36.87 27.45 0.00 1.85
195 196 1.689273 ACCCTAGAGCGCTCATTTAGG 59.311 52.381 36.87 33.20 0.00 2.69
196 197 1.606737 CCCTAGAGCGCTCATTTAGGC 60.607 57.143 36.87 10.39 31.55 3.93
201 202 3.409856 CGCTCATTTAGGCGGGTG 58.590 61.111 0.00 0.00 46.42 4.61
210 212 0.606944 TTAGGCGGGTGCGATTTGTT 60.607 50.000 0.00 0.00 44.10 2.83
213 215 1.006825 GGCGGGTGCGATTTGTTTTC 61.007 55.000 0.00 0.00 44.10 2.29
225 227 6.655003 TGCGATTTGTTTTCCTTCTCTTCTAT 59.345 34.615 0.00 0.00 0.00 1.98
242 244 8.101419 TCTCTTCTATTCTAGTTGGGGTTTTTC 58.899 37.037 0.00 0.00 0.00 2.29
243 245 7.985589 TCTTCTATTCTAGTTGGGGTTTTTCT 58.014 34.615 0.00 0.00 0.00 2.52
268 270 3.728566 CGAAAAACCGAACGTTGGACTTT 60.729 43.478 19.38 16.38 33.93 2.66
280 282 4.037565 ACGTTGGACTTTTTCAAAGGGATC 59.962 41.667 1.50 0.00 28.50 3.36
285 287 8.367911 GTTGGACTTTTTCAAAGGGATCTAAAT 58.632 33.333 1.50 0.00 0.00 1.40
475 544 9.744468 AAAAAGTGTTCGCTTATGTTAGAAAAT 57.256 25.926 0.00 0.00 0.00 1.82
476 545 9.744468 AAAAGTGTTCGCTTATGTTAGAAAATT 57.256 25.926 0.00 0.00 0.00 1.82
477 546 9.744468 AAAGTGTTCGCTTATGTTAGAAAATTT 57.256 25.926 0.00 0.00 0.00 1.82
479 548 9.180678 AGTGTTCGCTTATGTTAGAAAATTTTG 57.819 29.630 8.47 0.00 0.00 2.44
480 549 8.964150 GTGTTCGCTTATGTTAGAAAATTTTGT 58.036 29.630 8.47 7.01 0.00 2.83
561 630 9.889128 AAAAATCAAACCTCAAGAAAAGATGAA 57.111 25.926 0.00 0.00 0.00 2.57
562 631 9.889128 AAAATCAAACCTCAAGAAAAGATGAAA 57.111 25.926 0.00 0.00 0.00 2.69
563 632 9.889128 AAATCAAACCTCAAGAAAAGATGAAAA 57.111 25.926 0.00 0.00 0.00 2.29
628 697 7.616313 ACAGAAAACCAAAACAAAACCATAGA 58.384 30.769 0.00 0.00 0.00 1.98
638 707 9.848172 CAAAACAAAACCATAGAAGAAAAATCG 57.152 29.630 0.00 0.00 0.00 3.34
698 767 1.009389 GGACGCGAACTCTGGAACTG 61.009 60.000 15.93 0.00 0.00 3.16
703 772 1.336887 GCGAACTCTGGAACTGTGCTA 60.337 52.381 0.00 0.00 0.00 3.49
714 783 2.999507 ACTGTGCTAACTCTGTCTCG 57.000 50.000 0.00 0.00 0.00 4.04
716 785 0.888619 TGTGCTAACTCTGTCTCGGG 59.111 55.000 0.00 0.00 0.00 5.14
720 789 1.658686 CTAACTCTGTCTCGGGCGCT 61.659 60.000 7.64 0.00 0.00 5.92
741 810 0.605589 GCGTCAACTAGGGTTTGCCT 60.606 55.000 0.00 0.00 32.73 4.75
742 811 1.892209 CGTCAACTAGGGTTTGCCTT 58.108 50.000 0.00 0.00 32.73 4.35
743 812 1.535462 CGTCAACTAGGGTTTGCCTTG 59.465 52.381 0.00 0.00 32.73 3.61
744 813 1.269723 GTCAACTAGGGTTTGCCTTGC 59.730 52.381 0.00 0.00 32.73 4.01
745 814 0.603065 CAACTAGGGTTTGCCTTGCC 59.397 55.000 0.00 0.00 32.73 4.52
746 815 0.893727 AACTAGGGTTTGCCTTGCCG 60.894 55.000 0.00 0.00 30.55 5.69
747 816 1.002624 CTAGGGTTTGCCTTGCCGA 60.003 57.895 0.00 0.00 34.45 5.54
748 817 0.394352 CTAGGGTTTGCCTTGCCGAT 60.394 55.000 0.00 0.00 34.45 4.18
750 819 0.394352 AGGGTTTGCCTTGCCGATAG 60.394 55.000 0.00 0.00 34.45 2.08
752 821 1.680338 GGTTTGCCTTGCCGATAGAT 58.320 50.000 0.00 0.00 39.76 1.98
753 822 1.604278 GGTTTGCCTTGCCGATAGATC 59.396 52.381 0.00 0.00 39.76 2.75
754 823 2.288666 GTTTGCCTTGCCGATAGATCA 58.711 47.619 0.00 0.00 39.76 2.92
755 824 2.880890 GTTTGCCTTGCCGATAGATCAT 59.119 45.455 0.00 0.00 39.76 2.45
756 825 4.065088 GTTTGCCTTGCCGATAGATCATA 58.935 43.478 0.00 0.00 39.76 2.15
757 826 3.599730 TGCCTTGCCGATAGATCATAG 57.400 47.619 0.00 0.00 39.76 2.23
758 827 2.899900 TGCCTTGCCGATAGATCATAGT 59.100 45.455 0.00 0.00 39.76 2.12
759 828 4.086457 TGCCTTGCCGATAGATCATAGTA 58.914 43.478 0.00 0.00 39.76 1.82
760 829 4.082190 TGCCTTGCCGATAGATCATAGTAC 60.082 45.833 0.00 0.00 39.76 2.73
762 831 5.336849 GCCTTGCCGATAGATCATAGTACTT 60.337 44.000 0.00 0.00 39.76 2.24
763 832 6.692486 CCTTGCCGATAGATCATAGTACTTT 58.308 40.000 0.00 0.00 39.76 2.66
764 833 7.155328 CCTTGCCGATAGATCATAGTACTTTT 58.845 38.462 0.00 0.00 39.76 2.27
765 834 7.657761 CCTTGCCGATAGATCATAGTACTTTTT 59.342 37.037 0.00 0.00 39.76 1.94
798 968 4.404394 TGTAGAAGATGAGCCGATAAACCA 59.596 41.667 0.00 0.00 0.00 3.67
799 969 4.696479 AGAAGATGAGCCGATAAACCAT 57.304 40.909 0.00 0.00 0.00 3.55
800 970 5.808366 AGAAGATGAGCCGATAAACCATA 57.192 39.130 0.00 0.00 0.00 2.74
801 971 5.542779 AGAAGATGAGCCGATAAACCATAC 58.457 41.667 0.00 0.00 0.00 2.39
802 972 5.305644 AGAAGATGAGCCGATAAACCATACT 59.694 40.000 0.00 0.00 0.00 2.12
803 973 5.140747 AGATGAGCCGATAAACCATACTC 57.859 43.478 0.00 0.00 0.00 2.59
813 985 6.799925 CCGATAAACCATACTCAAACAACAAC 59.200 38.462 0.00 0.00 0.00 3.32
816 988 5.514274 AACCATACTCAAACAACAACAGG 57.486 39.130 0.00 0.00 0.00 4.00
817 989 4.532834 ACCATACTCAAACAACAACAGGT 58.467 39.130 0.00 0.00 0.00 4.00
818 990 5.686753 ACCATACTCAAACAACAACAGGTA 58.313 37.500 0.00 0.00 0.00 3.08
821 993 7.286775 ACCATACTCAAACAACAACAGGTAAAT 59.713 33.333 0.00 0.00 0.00 1.40
825 999 7.257722 ACTCAAACAACAACAGGTAAATTCAG 58.742 34.615 0.00 0.00 0.00 3.02
826 1000 7.093945 ACTCAAACAACAACAGGTAAATTCAGT 60.094 33.333 0.00 0.00 0.00 3.41
831 1005 6.208599 ACAACAACAGGTAAATTCAGTATGGG 59.791 38.462 0.00 0.00 36.16 4.00
913 1091 8.716646 AGAGAAAACAAAAACTTAAACCCATG 57.283 30.769 0.00 0.00 0.00 3.66
923 1101 5.327737 ACTTAAACCCATGTCTAAACCCA 57.672 39.130 0.00 0.00 0.00 4.51
1229 1424 0.401738 AATGCTGTAGGTGCACCACT 59.598 50.000 36.39 20.32 43.59 4.00
1244 1439 1.984570 CACTCCTCTCCCGCTCCAA 60.985 63.158 0.00 0.00 0.00 3.53
1245 1440 1.002274 ACTCCTCTCCCGCTCCAAT 59.998 57.895 0.00 0.00 0.00 3.16
1252 1447 3.181450 CCTCTCCCGCTCCAATTTCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
1256 1451 5.071788 TCTCCCGCTCCAATTTCTTATACAT 59.928 40.000 0.00 0.00 0.00 2.29
1265 1460 5.179368 CCAATTTCTTATACATGATCCGCGT 59.821 40.000 4.92 0.00 0.00 6.01
1271 1482 2.371910 TACATGATCCGCGTTGTTGA 57.628 45.000 4.92 0.00 0.00 3.18
1279 1490 3.196007 TCCGCGTTGTTGATGAAATTC 57.804 42.857 4.92 0.00 0.00 2.17
1281 1492 1.314412 CGCGTTGTTGATGAAATTCGC 59.686 47.619 0.00 0.00 39.21 4.70
1286 1497 5.559227 CGTTGTTGATGAAATTCGCTGATA 58.441 37.500 0.00 0.00 0.00 2.15
1290 1501 5.007039 TGTTGATGAAATTCGCTGATAGCTC 59.993 40.000 0.00 0.00 39.60 4.09
1296 1507 6.489675 TGAAATTCGCTGATAGCTCAAATTC 58.510 36.000 0.00 2.40 39.60 2.17
1297 1508 5.429957 AATTCGCTGATAGCTCAAATTCC 57.570 39.130 0.00 0.00 39.60 3.01
1298 1509 2.838736 TCGCTGATAGCTCAAATTCCC 58.161 47.619 0.00 0.00 39.60 3.97
1300 1511 2.486191 CGCTGATAGCTCAAATTCCCCT 60.486 50.000 0.00 0.00 39.60 4.79
1301 1512 2.883386 GCTGATAGCTCAAATTCCCCTG 59.117 50.000 0.00 0.00 38.45 4.45
1302 1513 3.484407 CTGATAGCTCAAATTCCCCTGG 58.516 50.000 0.00 0.00 0.00 4.45
1309 1530 2.228822 CTCAAATTCCCCTGGTGTTTCG 59.771 50.000 0.00 0.00 0.00 3.46
1339 1560 3.062466 TCGACCACGAGGAGCCTG 61.062 66.667 5.68 0.00 43.81 4.85
1357 1578 2.719979 CTTGCTGCGGATGATGCC 59.280 61.111 0.00 0.00 0.00 4.40
1366 1587 1.228675 GGATGATGCCATGGTCCCC 60.229 63.158 14.67 4.56 32.09 4.81
1375 1596 1.024579 CCATGGTCCCCGTTTCTTCG 61.025 60.000 2.57 0.00 0.00 3.79
1426 1647 1.446272 GACCGACAAGAAGGGAGCG 60.446 63.158 0.00 0.00 0.00 5.03
1429 1650 1.601419 CCGACAAGAAGGGAGCGGTA 61.601 60.000 0.00 0.00 34.45 4.02
1488 1710 1.610522 CAAGCAGGTAAACAGCAGCTT 59.389 47.619 0.00 1.30 42.45 3.74
1489 1711 1.242076 AGCAGGTAAACAGCAGCTTG 58.758 50.000 0.00 0.00 0.00 4.01
1499 1733 3.771577 ACAGCAGCTTGGTAGTAGTTT 57.228 42.857 0.00 0.00 0.00 2.66
1511 1745 8.996271 GCTTGGTAGTAGTTTGTTAGTTATGTT 58.004 33.333 0.00 0.00 0.00 2.71
1513 1747 9.492973 TTGGTAGTAGTTTGTTAGTTATGTTCC 57.507 33.333 0.00 0.00 0.00 3.62
1514 1748 8.873144 TGGTAGTAGTTTGTTAGTTATGTTCCT 58.127 33.333 0.00 0.00 0.00 3.36
1515 1749 9.363763 GGTAGTAGTTTGTTAGTTATGTTCCTC 57.636 37.037 0.00 0.00 0.00 3.71
1516 1750 9.918630 GTAGTAGTTTGTTAGTTATGTTCCTCA 57.081 33.333 0.00 0.00 0.00 3.86
1551 1785 9.512588 AGATATCCTAAAATGCTTGAGTAATGG 57.487 33.333 0.00 0.00 0.00 3.16
1575 1809 2.591429 TTGTGCAGCCCTGTGACG 60.591 61.111 0.00 0.00 0.00 4.35
1588 1829 2.279851 TGACGGCCGTGTCAAGTG 60.280 61.111 39.65 0.00 45.40 3.16
1589 1830 3.712881 GACGGCCGTGTCAAGTGC 61.713 66.667 39.65 15.35 38.75 4.40
1608 1849 1.269257 GCGCAGTTTCCTGAAAGCTTT 60.269 47.619 12.53 12.53 41.50 3.51
1610 1851 2.654987 GCAGTTTCCTGAAAGCTTTCG 58.345 47.619 29.03 23.15 41.50 3.46
1615 1856 3.963383 TTCCTGAAAGCTTTCGTTCAC 57.037 42.857 29.03 10.07 40.01 3.18
1630 2034 3.810941 TCGTTCACCATGTAGTTTTGTCC 59.189 43.478 0.00 0.00 0.00 4.02
1671 2125 7.652909 TCCATGAAACTTACTGAAAATTGCTTG 59.347 33.333 0.00 0.00 0.00 4.01
1672 2126 7.652909 CCATGAAACTTACTGAAAATTGCTTGA 59.347 33.333 0.00 0.00 0.00 3.02
1673 2127 8.697067 CATGAAACTTACTGAAAATTGCTTGAG 58.303 33.333 0.00 0.00 0.00 3.02
1674 2128 7.771183 TGAAACTTACTGAAAATTGCTTGAGT 58.229 30.769 0.00 0.00 0.00 3.41
1675 2129 8.898761 TGAAACTTACTGAAAATTGCTTGAGTA 58.101 29.630 0.00 0.00 0.00 2.59
1676 2130 9.730420 GAAACTTACTGAAAATTGCTTGAGTAA 57.270 29.630 3.09 3.09 0.00 2.24
1677 2131 9.736023 AAACTTACTGAAAATTGCTTGAGTAAG 57.264 29.630 19.36 19.36 41.49 2.34
1678 2132 7.875971 ACTTACTGAAAATTGCTTGAGTAAGG 58.124 34.615 22.39 11.77 40.84 2.69
1679 2133 7.719633 ACTTACTGAAAATTGCTTGAGTAAGGA 59.280 33.333 22.39 0.00 40.84 3.36
1680 2134 6.319141 ACTGAAAATTGCTTGAGTAAGGAC 57.681 37.500 0.00 0.00 33.70 3.85
1681 2135 5.827797 ACTGAAAATTGCTTGAGTAAGGACA 59.172 36.000 0.00 0.00 33.70 4.02
1682 2136 6.491403 ACTGAAAATTGCTTGAGTAAGGACAT 59.509 34.615 0.00 0.00 33.70 3.06
1683 2137 6.680810 TGAAAATTGCTTGAGTAAGGACATG 58.319 36.000 0.00 0.00 33.70 3.21
1684 2138 6.265196 TGAAAATTGCTTGAGTAAGGACATGT 59.735 34.615 0.00 0.00 33.70 3.21
1685 2139 5.633830 AATTGCTTGAGTAAGGACATGTG 57.366 39.130 1.15 0.00 33.70 3.21
1686 2140 2.426522 TGCTTGAGTAAGGACATGTGC 58.573 47.619 9.70 9.70 34.40 4.57
1687 2141 1.394917 GCTTGAGTAAGGACATGTGCG 59.605 52.381 12.02 0.00 34.40 5.34
1688 2142 1.394917 CTTGAGTAAGGACATGTGCGC 59.605 52.381 12.02 0.00 0.00 6.09
1689 2143 0.735978 TGAGTAAGGACATGTGCGCG 60.736 55.000 12.02 0.00 0.00 6.86
1690 2144 1.421410 GAGTAAGGACATGTGCGCGG 61.421 60.000 12.02 0.00 0.00 6.46
1691 2145 1.740296 GTAAGGACATGTGCGCGGT 60.740 57.895 12.02 0.00 0.00 5.68
1692 2146 1.004320 TAAGGACATGTGCGCGGTT 60.004 52.632 12.02 3.34 0.00 4.44
1693 2147 1.017177 TAAGGACATGTGCGCGGTTC 61.017 55.000 12.02 0.00 0.00 3.62
1694 2148 2.731691 AAGGACATGTGCGCGGTTCT 62.732 55.000 12.02 0.00 0.00 3.01
1695 2149 2.476051 GACATGTGCGCGGTTCTG 59.524 61.111 8.83 0.00 0.00 3.02
1696 2150 2.280797 ACATGTGCGCGGTTCTGT 60.281 55.556 8.83 0.00 0.00 3.41
1697 2151 2.174107 CATGTGCGCGGTTCTGTG 59.826 61.111 8.83 0.00 0.00 3.66
1698 2152 3.049674 ATGTGCGCGGTTCTGTGG 61.050 61.111 8.83 0.00 0.00 4.17
1705 2159 4.988598 CGGTTCTGTGGCAGCCGT 62.989 66.667 7.03 0.00 34.22 5.68
1706 2160 3.357079 GGTTCTGTGGCAGCCGTG 61.357 66.667 7.03 0.00 0.00 4.94
1707 2161 2.591715 GTTCTGTGGCAGCCGTGT 60.592 61.111 7.03 0.00 0.00 4.49
1708 2162 2.280797 TTCTGTGGCAGCCGTGTC 60.281 61.111 7.03 0.00 0.00 3.67
1709 2163 3.100503 TTCTGTGGCAGCCGTGTCA 62.101 57.895 7.03 2.71 35.32 3.58
1710 2164 2.591429 CTGTGGCAGCCGTGTCAA 60.591 61.111 7.03 0.00 40.92 3.18
1711 2165 2.591429 TGTGGCAGCCGTGTCAAG 60.591 61.111 7.03 0.00 40.92 3.02
1712 2166 2.591715 GTGGCAGCCGTGTCAAGT 60.592 61.111 7.03 0.00 40.92 3.16
1713 2167 1.301401 GTGGCAGCCGTGTCAAGTA 60.301 57.895 7.03 0.00 40.92 2.24
1714 2168 0.882927 GTGGCAGCCGTGTCAAGTAA 60.883 55.000 7.03 0.00 40.92 2.24
1715 2169 0.036164 TGGCAGCCGTGTCAAGTAAT 59.964 50.000 7.03 0.00 34.53 1.89
1716 2170 0.447801 GGCAGCCGTGTCAAGTAATG 59.552 55.000 0.00 0.00 0.00 1.90
1717 2171 0.179189 GCAGCCGTGTCAAGTAATGC 60.179 55.000 0.00 0.00 0.00 3.56
1718 2172 1.155889 CAGCCGTGTCAAGTAATGCA 58.844 50.000 0.00 0.00 0.00 3.96
1719 2173 1.129251 CAGCCGTGTCAAGTAATGCAG 59.871 52.381 0.00 0.00 0.00 4.41
1720 2174 1.156736 GCCGTGTCAAGTAATGCAGT 58.843 50.000 0.00 0.00 0.00 4.40
1721 2175 1.135972 GCCGTGTCAAGTAATGCAGTG 60.136 52.381 0.00 0.00 0.00 3.66
1722 2176 2.143122 CCGTGTCAAGTAATGCAGTGT 58.857 47.619 0.00 0.00 0.00 3.55
1723 2177 3.322369 CCGTGTCAAGTAATGCAGTGTA 58.678 45.455 0.00 0.00 0.00 2.90
1724 2178 3.122948 CCGTGTCAAGTAATGCAGTGTAC 59.877 47.826 0.00 0.00 0.00 2.90
1725 2179 3.122948 CGTGTCAAGTAATGCAGTGTACC 59.877 47.826 0.00 0.00 0.00 3.34
1726 2180 4.315803 GTGTCAAGTAATGCAGTGTACCT 58.684 43.478 0.00 0.00 0.00 3.08
1727 2181 4.152402 GTGTCAAGTAATGCAGTGTACCTG 59.848 45.833 0.00 6.91 44.53 4.00
1728 2182 4.039852 TGTCAAGTAATGCAGTGTACCTGA 59.960 41.667 13.57 0.00 44.49 3.86
1729 2183 4.994852 GTCAAGTAATGCAGTGTACCTGAA 59.005 41.667 13.57 5.26 44.49 3.02
1730 2184 5.468746 GTCAAGTAATGCAGTGTACCTGAAA 59.531 40.000 13.57 3.59 44.49 2.69
1731 2185 5.468746 TCAAGTAATGCAGTGTACCTGAAAC 59.531 40.000 13.57 2.16 44.49 2.78
1732 2186 5.228945 AGTAATGCAGTGTACCTGAAACT 57.771 39.130 13.57 4.04 44.49 2.66
1733 2187 5.621193 AGTAATGCAGTGTACCTGAAACTT 58.379 37.500 13.57 1.20 44.49 2.66
1734 2188 6.062095 AGTAATGCAGTGTACCTGAAACTTT 58.938 36.000 13.57 0.64 44.49 2.66
1735 2189 5.438761 AATGCAGTGTACCTGAAACTTTC 57.561 39.130 13.57 0.00 44.49 2.62
1736 2190 4.150897 TGCAGTGTACCTGAAACTTTCT 57.849 40.909 13.57 0.00 44.49 2.52
1737 2191 4.127171 TGCAGTGTACCTGAAACTTTCTC 58.873 43.478 13.57 0.00 44.49 2.87
1738 2192 4.141711 TGCAGTGTACCTGAAACTTTCTCT 60.142 41.667 13.57 0.00 44.49 3.10
1739 2193 4.816925 GCAGTGTACCTGAAACTTTCTCTT 59.183 41.667 13.57 0.00 44.49 2.85
1740 2194 5.050023 GCAGTGTACCTGAAACTTTCTCTTC 60.050 44.000 13.57 0.00 44.49 2.87
1741 2195 6.049149 CAGTGTACCTGAAACTTTCTCTTCA 58.951 40.000 5.67 0.00 44.49 3.02
1742 2196 6.538742 CAGTGTACCTGAAACTTTCTCTTCAA 59.461 38.462 5.67 0.00 44.49 2.69
1743 2197 6.539103 AGTGTACCTGAAACTTTCTCTTCAAC 59.461 38.462 3.22 0.00 31.41 3.18
1744 2198 6.315393 GTGTACCTGAAACTTTCTCTTCAACA 59.685 38.462 3.22 0.00 31.41 3.33
1745 2199 7.012421 GTGTACCTGAAACTTTCTCTTCAACAT 59.988 37.037 3.22 0.00 31.41 2.71
1746 2200 6.382869 ACCTGAAACTTTCTCTTCAACATG 57.617 37.500 3.22 0.00 31.41 3.21
1747 2201 5.888161 ACCTGAAACTTTCTCTTCAACATGT 59.112 36.000 0.00 0.00 31.41 3.21
1748 2202 7.054124 ACCTGAAACTTTCTCTTCAACATGTA 58.946 34.615 0.00 0.00 31.41 2.29
1749 2203 7.227512 ACCTGAAACTTTCTCTTCAACATGTAG 59.772 37.037 0.00 0.00 31.41 2.74
1750 2204 6.959361 TGAAACTTTCTCTTCAACATGTAGC 58.041 36.000 0.00 0.00 0.00 3.58
1751 2205 6.767902 TGAAACTTTCTCTTCAACATGTAGCT 59.232 34.615 0.00 0.00 0.00 3.32
1752 2206 7.283127 TGAAACTTTCTCTTCAACATGTAGCTT 59.717 33.333 0.00 0.00 0.00 3.74
1753 2207 8.677148 AAACTTTCTCTTCAACATGTAGCTTA 57.323 30.769 0.00 0.00 0.00 3.09
1754 2208 7.897575 ACTTTCTCTTCAACATGTAGCTTAG 57.102 36.000 0.00 0.00 0.00 2.18
1755 2209 7.445945 ACTTTCTCTTCAACATGTAGCTTAGT 58.554 34.615 0.00 0.00 0.00 2.24
1756 2210 7.600752 ACTTTCTCTTCAACATGTAGCTTAGTC 59.399 37.037 0.00 0.00 0.00 2.59
1757 2211 6.590234 TCTCTTCAACATGTAGCTTAGTCA 57.410 37.500 0.00 0.00 0.00 3.41
1758 2212 6.993079 TCTCTTCAACATGTAGCTTAGTCAA 58.007 36.000 0.00 0.00 0.00 3.18
1759 2213 7.093354 TCTCTTCAACATGTAGCTTAGTCAAG 58.907 38.462 0.00 0.00 34.66 3.02
1760 2214 6.993079 TCTTCAACATGTAGCTTAGTCAAGA 58.007 36.000 0.00 0.00 33.20 3.02
1761 2215 7.615403 TCTTCAACATGTAGCTTAGTCAAGAT 58.385 34.615 0.00 0.00 33.20 2.40
1762 2216 8.749354 TCTTCAACATGTAGCTTAGTCAAGATA 58.251 33.333 0.00 0.00 33.20 1.98
1770 2224 5.746990 AGCTTAGTCAAGATACAGGTTGT 57.253 39.130 0.00 0.00 33.20 3.32
1771 2225 6.115448 AGCTTAGTCAAGATACAGGTTGTT 57.885 37.500 0.00 0.00 33.20 2.83
1772 2226 6.534634 AGCTTAGTCAAGATACAGGTTGTTT 58.465 36.000 0.00 0.00 33.20 2.83
1773 2227 6.651225 AGCTTAGTCAAGATACAGGTTGTTTC 59.349 38.462 0.00 0.00 33.20 2.78
1774 2228 6.128254 GCTTAGTCAAGATACAGGTTGTTTCC 60.128 42.308 0.00 0.00 33.20 3.13
1775 2229 5.304686 AGTCAAGATACAGGTTGTTTCCA 57.695 39.130 0.00 0.00 30.17 3.53
1776 2230 5.880901 AGTCAAGATACAGGTTGTTTCCAT 58.119 37.500 0.00 0.00 30.17 3.41
1777 2231 5.707298 AGTCAAGATACAGGTTGTTTCCATG 59.293 40.000 0.00 0.00 30.17 3.66
1778 2232 5.705441 GTCAAGATACAGGTTGTTTCCATGA 59.295 40.000 0.00 0.00 30.17 3.07
1779 2233 5.705441 TCAAGATACAGGTTGTTTCCATGAC 59.295 40.000 0.00 0.00 30.17 3.06
1780 2234 5.241403 AGATACAGGTTGTTTCCATGACA 57.759 39.130 0.00 0.00 30.17 3.58
1781 2235 5.003804 AGATACAGGTTGTTTCCATGACAC 58.996 41.667 0.00 0.00 30.17 3.67
1782 2236 3.297134 ACAGGTTGTTTCCATGACACT 57.703 42.857 0.00 0.00 0.00 3.55
1783 2237 3.631250 ACAGGTTGTTTCCATGACACTT 58.369 40.909 0.00 0.00 0.00 3.16
1784 2238 4.787551 ACAGGTTGTTTCCATGACACTTA 58.212 39.130 0.00 0.00 0.00 2.24
1785 2239 4.578928 ACAGGTTGTTTCCATGACACTTAC 59.421 41.667 0.00 0.00 0.00 2.34
1786 2240 4.821805 CAGGTTGTTTCCATGACACTTACT 59.178 41.667 0.00 0.00 0.00 2.24
1787 2241 5.995282 CAGGTTGTTTCCATGACACTTACTA 59.005 40.000 0.00 0.00 0.00 1.82
1788 2242 6.485313 CAGGTTGTTTCCATGACACTTACTAA 59.515 38.462 0.00 0.00 0.00 2.24
1789 2243 6.710744 AGGTTGTTTCCATGACACTTACTAAG 59.289 38.462 0.00 0.00 0.00 2.18
1790 2244 6.708949 GGTTGTTTCCATGACACTTACTAAGA 59.291 38.462 2.65 0.00 0.00 2.10
1791 2245 7.095187 GGTTGTTTCCATGACACTTACTAAGAG 60.095 40.741 2.65 0.00 0.00 2.85
1792 2246 7.062749 TGTTTCCATGACACTTACTAAGAGT 57.937 36.000 2.65 0.75 34.95 3.24
1802 2256 6.170675 CACTTACTAAGAGTGTTTGGATGC 57.829 41.667 2.65 0.00 39.66 3.91
1803 2257 5.934625 CACTTACTAAGAGTGTTTGGATGCT 59.065 40.000 2.65 0.00 39.66 3.79
1804 2258 6.428159 CACTTACTAAGAGTGTTTGGATGCTT 59.572 38.462 2.65 0.00 39.66 3.91
1805 2259 6.428159 ACTTACTAAGAGTGTTTGGATGCTTG 59.572 38.462 2.65 0.00 0.00 4.01
1806 2260 4.074970 ACTAAGAGTGTTTGGATGCTTGG 58.925 43.478 0.00 0.00 0.00 3.61
1807 2261 2.664402 AGAGTGTTTGGATGCTTGGT 57.336 45.000 0.00 0.00 0.00 3.67
1808 2262 3.788227 AGAGTGTTTGGATGCTTGGTA 57.212 42.857 0.00 0.00 0.00 3.25
1809 2263 4.307032 AGAGTGTTTGGATGCTTGGTAT 57.693 40.909 0.00 0.00 0.00 2.73
1810 2264 4.012374 AGAGTGTTTGGATGCTTGGTATG 58.988 43.478 0.00 0.00 0.00 2.39
1811 2265 3.758554 GAGTGTTTGGATGCTTGGTATGT 59.241 43.478 0.00 0.00 0.00 2.29
1812 2266 3.758554 AGTGTTTGGATGCTTGGTATGTC 59.241 43.478 0.00 0.00 0.00 3.06
1813 2267 2.746904 TGTTTGGATGCTTGGTATGTCG 59.253 45.455 0.00 0.00 0.00 4.35
1814 2268 2.036958 TTGGATGCTTGGTATGTCGG 57.963 50.000 0.00 0.00 0.00 4.79
1815 2269 1.199615 TGGATGCTTGGTATGTCGGA 58.800 50.000 0.00 0.00 0.00 4.55
1816 2270 1.557371 TGGATGCTTGGTATGTCGGAA 59.443 47.619 0.00 0.00 0.00 4.30
1817 2271 1.940613 GGATGCTTGGTATGTCGGAAC 59.059 52.381 0.00 0.00 0.00 3.62
1818 2272 1.940613 GATGCTTGGTATGTCGGAACC 59.059 52.381 0.00 0.00 36.24 3.62
1819 2273 0.687920 TGCTTGGTATGTCGGAACCA 59.312 50.000 0.00 0.00 43.99 3.67
1820 2274 1.084289 GCTTGGTATGTCGGAACCAC 58.916 55.000 0.00 0.00 45.31 4.16
1821 2275 1.734163 CTTGGTATGTCGGAACCACC 58.266 55.000 0.00 0.00 45.31 4.61
1822 2276 1.002659 CTTGGTATGTCGGAACCACCA 59.997 52.381 0.00 1.25 45.31 4.17
1823 2277 1.057471 TGGTATGTCGGAACCACCAA 58.943 50.000 0.00 0.00 40.84 3.67
1824 2278 1.270947 TGGTATGTCGGAACCACCAAC 60.271 52.381 0.00 0.00 40.84 3.77
1825 2279 1.445871 GTATGTCGGAACCACCAACC 58.554 55.000 0.00 0.00 38.90 3.77
1826 2280 0.037139 TATGTCGGAACCACCAACCG 60.037 55.000 0.00 0.00 46.71 4.44
1827 2281 2.667199 GTCGGAACCACCAACCGG 60.667 66.667 0.00 0.00 45.61 5.28
1829 2283 1.836158 TCGGAACCACCAACCGGTA 60.836 57.895 8.00 0.00 46.94 4.02
1830 2284 1.193462 TCGGAACCACCAACCGGTAT 61.193 55.000 8.00 0.00 46.94 2.73
1831 2285 1.022451 CGGAACCACCAACCGGTATG 61.022 60.000 8.00 8.73 46.94 2.39
1832 2286 0.678684 GGAACCACCAACCGGTATGG 60.679 60.000 25.23 25.23 46.94 2.74
1833 2287 0.325602 GAACCACCAACCGGTATGGA 59.674 55.000 30.45 0.00 46.94 3.41
1834 2288 0.326927 AACCACCAACCGGTATGGAG 59.673 55.000 30.45 24.69 46.94 3.86
1835 2289 0.545787 ACCACCAACCGGTATGGAGA 60.546 55.000 30.45 0.00 46.94 3.71
1836 2290 0.616371 CCACCAACCGGTATGGAGAA 59.384 55.000 30.45 0.00 46.94 2.87
1837 2291 1.406887 CCACCAACCGGTATGGAGAAG 60.407 57.143 30.45 19.88 46.94 2.85
1838 2292 1.553248 CACCAACCGGTATGGAGAAGA 59.447 52.381 30.45 0.00 46.94 2.87
1839 2293 2.170607 CACCAACCGGTATGGAGAAGAT 59.829 50.000 30.45 12.98 46.94 2.40
1840 2294 3.386726 CACCAACCGGTATGGAGAAGATA 59.613 47.826 30.45 0.00 46.94 1.98
1841 2295 4.035112 ACCAACCGGTATGGAGAAGATAA 58.965 43.478 30.45 0.00 46.71 1.75
1842 2296 4.472108 ACCAACCGGTATGGAGAAGATAAA 59.528 41.667 30.45 0.00 46.71 1.40
1843 2297 5.057149 CCAACCGGTATGGAGAAGATAAAG 58.943 45.833 23.61 0.46 42.00 1.85
1844 2298 4.338379 ACCGGTATGGAGAAGATAAAGC 57.662 45.455 4.49 0.00 42.00 3.51
1845 2299 3.709653 ACCGGTATGGAGAAGATAAAGCA 59.290 43.478 4.49 0.00 42.00 3.91
1846 2300 4.348168 ACCGGTATGGAGAAGATAAAGCAT 59.652 41.667 4.49 0.00 42.00 3.79
1847 2301 5.163195 ACCGGTATGGAGAAGATAAAGCATT 60.163 40.000 4.49 0.00 42.00 3.56
1911 2727 8.462016 GTTAAATATGTGTTCCTGAGATTTGCT 58.538 33.333 0.00 0.00 0.00 3.91
1942 2758 5.823045 ACTTAGCCTACTGGTTATTCATTGC 59.177 40.000 0.00 0.00 35.27 3.56
1985 3022 8.232913 TGGAAAACACTTGCTTATCTTACTTT 57.767 30.769 0.00 0.00 0.00 2.66
2029 3232 1.040339 AGAGAGACTAAGGCTGCCCG 61.040 60.000 16.57 6.88 35.76 6.13
2058 3261 2.632512 TCATGAACTGGTGTACTGCTCA 59.367 45.455 0.00 0.00 0.00 4.26
2059 3262 3.261643 TCATGAACTGGTGTACTGCTCAT 59.738 43.478 0.00 0.00 35.16 2.90
2060 3263 4.466015 TCATGAACTGGTGTACTGCTCATA 59.534 41.667 0.00 0.00 33.69 2.15
2064 3267 6.573434 TGAACTGGTGTACTGCTCATAATAG 58.427 40.000 0.00 0.00 0.00 1.73
2438 3760 9.555727 GCAGATAAACTTATTGTGGGTAAGATA 57.444 33.333 0.37 0.00 34.17 1.98
2447 3769 6.949352 ATTGTGGGTAAGATAAGATTGCAG 57.051 37.500 0.00 0.00 0.00 4.41
2468 3792 2.989166 GCAAAGCTGCTCACATTTTACC 59.011 45.455 1.00 0.00 45.74 2.85
2474 3798 3.181493 GCTGCTCACATTTTACCTCCATG 60.181 47.826 0.00 0.00 0.00 3.66
2508 3842 1.813102 AATCTCATCACCCTCCTCCC 58.187 55.000 0.00 0.00 0.00 4.30
2877 4583 3.370104 ACTAGTAGCTGGATCTGCAGTT 58.630 45.455 14.67 5.03 0.00 3.16
2882 4588 1.066286 AGCTGGATCTGCAGTTGTCTC 60.066 52.381 14.67 4.28 0.00 3.36
2891 4597 1.337167 TGCAGTTGTCTCGTCCATCTG 60.337 52.381 0.00 0.00 34.32 2.90
2916 4622 8.735315 TGTTTGTTGAGATTTACTGAAGAACAA 58.265 29.630 0.00 0.00 31.63 2.83
2917 4623 9.736023 GTTTGTTGAGATTTACTGAAGAACAAT 57.264 29.630 0.00 0.00 33.43 2.71
2919 4625 8.675705 TGTTGAGATTTACTGAAGAACAATCA 57.324 30.769 0.00 0.00 0.00 2.57
2947 4654 2.007049 GCGCTCCCTCGAAAGAATTCA 61.007 52.381 8.44 0.00 41.32 2.57
2993 4700 4.206375 TCTGTTGTGTTTGTGTCATCCAT 58.794 39.130 0.00 0.00 0.00 3.41
2994 4701 4.275689 TCTGTTGTGTTTGTGTCATCCATC 59.724 41.667 0.00 0.00 0.00 3.51
2995 4702 3.317711 TGTTGTGTTTGTGTCATCCATCC 59.682 43.478 0.00 0.00 0.00 3.51
2996 4703 2.150390 TGTGTTTGTGTCATCCATCCG 58.850 47.619 0.00 0.00 0.00 4.18
3020 4727 6.031417 CGTACGAAATCTTTCAAGACATTTGC 59.969 38.462 10.44 0.00 37.98 3.68
3021 4728 6.076981 ACGAAATCTTTCAAGACATTTGCT 57.923 33.333 3.77 0.00 37.98 3.91
3022 4729 6.145535 ACGAAATCTTTCAAGACATTTGCTC 58.854 36.000 3.77 0.00 37.98 4.26
3023 4730 6.016777 ACGAAATCTTTCAAGACATTTGCTCT 60.017 34.615 3.77 0.00 37.98 4.09
3024 4731 6.860023 CGAAATCTTTCAAGACATTTGCTCTT 59.140 34.615 3.77 0.00 37.98 2.85
3025 4732 7.380602 CGAAATCTTTCAAGACATTTGCTCTTT 59.619 33.333 3.77 0.00 37.98 2.52
3026 4733 8.585189 AAATCTTTCAAGACATTTGCTCTTTC 57.415 30.769 0.00 0.00 37.98 2.62
3027 4734 6.698008 TCTTTCAAGACATTTGCTCTTTCA 57.302 33.333 0.00 0.00 0.00 2.69
3028 4735 7.099266 TCTTTCAAGACATTTGCTCTTTCAA 57.901 32.000 0.00 0.00 0.00 2.69
3029 4736 7.198390 TCTTTCAAGACATTTGCTCTTTCAAG 58.802 34.615 0.00 0.00 0.00 3.02
3030 4737 6.698008 TTCAAGACATTTGCTCTTTCAAGA 57.302 33.333 0.00 0.00 0.00 3.02
3031 4738 6.064846 TCAAGACATTTGCTCTTTCAAGAC 57.935 37.500 0.00 0.00 0.00 3.01
3032 4739 5.589855 TCAAGACATTTGCTCTTTCAAGACA 59.410 36.000 0.00 0.00 0.00 3.41
3033 4740 6.263842 TCAAGACATTTGCTCTTTCAAGACAT 59.736 34.615 0.00 0.00 0.00 3.06
3034 4741 6.645790 AGACATTTGCTCTTTCAAGACATT 57.354 33.333 0.00 0.00 0.00 2.71
3035 4742 7.047460 AGACATTTGCTCTTTCAAGACATTT 57.953 32.000 0.00 0.00 0.00 2.32
3036 4743 6.921857 AGACATTTGCTCTTTCAAGACATTTG 59.078 34.615 0.00 0.00 0.00 2.32
3041 4748 4.023450 TGCTCTTTCAAGACATTTGCTCTG 60.023 41.667 0.00 0.00 0.00 3.35
3095 4923 3.064207 TGTTCGGCATGTCTGTTCTTAC 58.936 45.455 0.00 0.00 0.00 2.34
3117 4948 3.748048 CACATGTCGGTCTGTTTCTTGAT 59.252 43.478 0.00 0.00 0.00 2.57
3118 4949 4.929211 CACATGTCGGTCTGTTTCTTGATA 59.071 41.667 0.00 0.00 0.00 2.15
3119 4950 4.929808 ACATGTCGGTCTGTTTCTTGATAC 59.070 41.667 0.00 0.00 0.00 2.24
3122 4953 3.927142 GTCGGTCTGTTTCTTGATACTGG 59.073 47.826 0.00 0.00 0.00 4.00
3123 4954 3.576982 TCGGTCTGTTTCTTGATACTGGT 59.423 43.478 0.00 0.00 0.00 4.00
3124 4955 4.039973 TCGGTCTGTTTCTTGATACTGGTT 59.960 41.667 0.00 0.00 0.00 3.67
3125 4956 4.152402 CGGTCTGTTTCTTGATACTGGTTG 59.848 45.833 0.00 0.00 0.00 3.77
3126 4957 4.083271 GGTCTGTTTCTTGATACTGGTTGC 60.083 45.833 0.00 0.00 0.00 4.17
3166 5043 5.389520 TGAATTTTTGATACTGGTGTGGGA 58.610 37.500 0.00 0.00 0.00 4.37
3167 5044 6.015918 TGAATTTTTGATACTGGTGTGGGAT 58.984 36.000 0.00 0.00 0.00 3.85
3168 5045 6.152661 TGAATTTTTGATACTGGTGTGGGATC 59.847 38.462 0.00 0.00 0.00 3.36
3183 5083 5.529060 GTGTGGGATCCAGAAGTTGATATTC 59.471 44.000 15.23 0.00 32.34 1.75
3203 5103 1.339929 CAAGGGTGTTTAGGTTGTGGC 59.660 52.381 0.00 0.00 0.00 5.01
3204 5104 0.178973 AGGGTGTTTAGGTTGTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
3205 5105 0.178973 GGGTGTTTAGGTTGTGGCCT 60.179 55.000 3.32 0.00 42.43 5.19
3208 5108 1.339929 GTGTTTAGGTTGTGGCCTTGG 59.660 52.381 3.32 0.00 39.94 3.61
3212 5112 2.706952 TAGGTTGTGGCCTTGGGTGC 62.707 60.000 3.32 0.00 39.94 5.01
3215 5115 4.514585 TGTGGCCTTGGGTGCGTT 62.515 61.111 3.32 0.00 0.00 4.84
3216 5116 2.281900 GTGGCCTTGGGTGCGTTA 60.282 61.111 3.32 0.00 0.00 3.18
3375 5302 6.827727 TGAATACTCCCAAACCTAATAGCTC 58.172 40.000 0.00 0.00 0.00 4.09
3378 5305 3.118223 ACTCCCAAACCTAATAGCTCAGC 60.118 47.826 0.00 0.00 0.00 4.26
3435 5363 4.966787 GTCCGGCCTGCCAAACCA 62.967 66.667 9.17 0.00 35.37 3.67
3502 5430 9.313118 AGTTTAAATTTGAACTGAAACCATGAC 57.687 29.630 23.18 0.00 35.92 3.06
3551 5479 8.451908 ACCTTATATTGTCAAAACCATCTAGC 57.548 34.615 0.00 0.00 0.00 3.42
3579 5507 2.287248 GGACTGAAAGCAGCTTTGACAC 60.287 50.000 25.40 10.94 46.26 3.67
3611 5540 1.512926 AGTTCTTTGCACACCTAGCG 58.487 50.000 0.00 0.00 33.85 4.26
3663 5594 6.133356 AGGGGAAACAAGAAAATGTAAGTGA 58.867 36.000 0.00 0.00 32.02 3.41
3664 5595 6.782494 AGGGGAAACAAGAAAATGTAAGTGAT 59.218 34.615 0.00 0.00 32.02 3.06
3666 5597 8.581578 GGGGAAACAAGAAAATGTAAGTGATAA 58.418 33.333 0.00 0.00 32.02 1.75
3788 5724 5.946377 GGTTTCCAACTTATCACATTCTCCT 59.054 40.000 0.00 0.00 0.00 3.69
3789 5725 6.434340 GGTTTCCAACTTATCACATTCTCCTT 59.566 38.462 0.00 0.00 0.00 3.36
3790 5726 7.362142 GGTTTCCAACTTATCACATTCTCCTTC 60.362 40.741 0.00 0.00 0.00 3.46
3791 5727 6.373005 TCCAACTTATCACATTCTCCTTCA 57.627 37.500 0.00 0.00 0.00 3.02
3792 5728 6.409704 TCCAACTTATCACATTCTCCTTCAG 58.590 40.000 0.00 0.00 0.00 3.02
3793 5729 6.013379 TCCAACTTATCACATTCTCCTTCAGT 60.013 38.462 0.00 0.00 0.00 3.41
3794 5730 6.656693 CCAACTTATCACATTCTCCTTCAGTT 59.343 38.462 0.00 0.00 0.00 3.16
3795 5731 7.175641 CCAACTTATCACATTCTCCTTCAGTTT 59.824 37.037 0.00 0.00 0.00 2.66
3796 5732 7.678947 ACTTATCACATTCTCCTTCAGTTTG 57.321 36.000 0.00 0.00 0.00 2.93
3797 5733 7.227156 ACTTATCACATTCTCCTTCAGTTTGT 58.773 34.615 0.00 0.00 0.00 2.83
3798 5734 7.721399 ACTTATCACATTCTCCTTCAGTTTGTT 59.279 33.333 0.00 0.00 0.00 2.83
3799 5735 9.219603 CTTATCACATTCTCCTTCAGTTTGTTA 57.780 33.333 0.00 0.00 0.00 2.41
3800 5736 9.567776 TTATCACATTCTCCTTCAGTTTGTTAA 57.432 29.630 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.405391 CCACCCATTTCCCATTTTCGC 60.405 52.381 0.00 0.00 0.00 4.70
10 11 2.094234 GTCCACCCATTTCCCATTTTCG 60.094 50.000 0.00 0.00 0.00 3.46
26 27 2.910688 ATGACCATATCCACGTCCAC 57.089 50.000 0.00 0.00 0.00 4.02
30 31 6.419484 TCAAATCTATGACCATATCCACGT 57.581 37.500 0.00 0.00 0.00 4.49
31 32 7.657354 TCTTTCAAATCTATGACCATATCCACG 59.343 37.037 0.00 0.00 0.00 4.94
32 33 8.908786 TCTTTCAAATCTATGACCATATCCAC 57.091 34.615 0.00 0.00 0.00 4.02
60 61 2.592287 GCGGGTTGGACGGACAAA 60.592 61.111 0.00 0.00 31.17 2.83
72 73 3.721370 GATGGCAATGAGGGCGGGT 62.721 63.158 0.00 0.00 35.84 5.28
77 78 3.282157 CGCGGATGGCAATGAGGG 61.282 66.667 0.00 0.00 43.84 4.30
91 92 2.879646 AGAGGTCTCTAGTTTATCCGCG 59.120 50.000 0.00 0.00 38.35 6.46
139 140 1.523938 GCTCGGTTCAGGTATGGCC 60.524 63.158 0.00 0.00 37.58 5.36
147 148 1.656652 CCATTACTGGCTCGGTTCAG 58.343 55.000 0.00 0.00 35.23 3.02
177 178 1.789506 GCCTAAATGAGCGCTCTAGG 58.210 55.000 32.09 32.09 0.00 3.02
179 180 3.569916 CGCCTAAATGAGCGCTCTA 57.430 52.632 35.27 22.83 46.50 2.43
185 186 2.823829 CGCACCCGCCTAAATGAGC 61.824 63.158 0.00 0.00 33.11 4.26
193 194 1.460273 AAAACAAATCGCACCCGCCT 61.460 50.000 0.00 0.00 33.11 5.52
194 195 1.006688 AAAACAAATCGCACCCGCC 60.007 52.632 0.00 0.00 33.11 6.13
195 196 1.006825 GGAAAACAAATCGCACCCGC 61.007 55.000 0.00 0.00 0.00 6.13
196 197 0.596082 AGGAAAACAAATCGCACCCG 59.404 50.000 0.00 0.00 0.00 5.28
197 198 2.296190 AGAAGGAAAACAAATCGCACCC 59.704 45.455 0.00 0.00 0.00 4.61
200 201 4.821805 AGAAGAGAAGGAAAACAAATCGCA 59.178 37.500 0.00 0.00 0.00 5.10
201 202 5.363979 AGAAGAGAAGGAAAACAAATCGC 57.636 39.130 0.00 0.00 0.00 4.58
210 212 7.092846 CCCCAACTAGAATAGAAGAGAAGGAAA 60.093 40.741 0.00 0.00 42.77 3.13
213 215 5.663556 ACCCCAACTAGAATAGAAGAGAAGG 59.336 44.000 0.00 0.00 42.77 3.46
225 227 5.438833 TCGAAAGAAAAACCCCAACTAGAA 58.561 37.500 0.00 0.00 37.03 2.10
257 259 3.358118 TCCCTTTGAAAAAGTCCAACGT 58.642 40.909 0.00 0.00 0.00 3.99
268 270 9.387397 AGGGTTTTTATTTAGATCCCTTTGAAA 57.613 29.630 0.00 0.00 40.56 2.69
453 522 9.180678 CAAAATTTTCTAACATAAGCGAACACT 57.819 29.630 0.00 0.00 0.00 3.55
592 661 6.926630 TTTGGTTTTCTGTATGGCCTTATT 57.073 33.333 3.32 0.00 0.00 1.40
594 663 5.598830 TGTTTTGGTTTTCTGTATGGCCTTA 59.401 36.000 3.32 0.00 0.00 2.69
596 665 3.964031 TGTTTTGGTTTTCTGTATGGCCT 59.036 39.130 3.32 0.00 0.00 5.19
597 666 4.329462 TGTTTTGGTTTTCTGTATGGCC 57.671 40.909 0.00 0.00 0.00 5.36
654 723 0.241213 CTCTGTCTCGTCCGCTGAAA 59.759 55.000 0.00 0.00 0.00 2.69
698 767 0.458716 GCCCGAGACAGAGTTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
703 772 2.992114 AGCGCCCGAGACAGAGTT 60.992 61.111 2.29 0.00 0.00 3.01
714 783 4.752879 TAGTTGACGCCAGCGCCC 62.753 66.667 12.72 5.01 44.19 6.13
716 785 3.188786 CCTAGTTGACGCCAGCGC 61.189 66.667 12.72 0.00 44.19 5.92
720 789 0.887387 GCAAACCCTAGTTGACGCCA 60.887 55.000 0.00 0.00 35.97 5.69
723 792 1.535462 CAAGGCAAACCCTAGTTGACG 59.465 52.381 0.00 0.00 45.62 4.35
764 833 8.450964 CGGCTCATCTTCTACAAAGAAAAATAA 58.549 33.333 0.00 0.00 41.19 1.40
765 834 7.822334 TCGGCTCATCTTCTACAAAGAAAAATA 59.178 33.333 0.00 0.00 41.19 1.40
777 945 5.808366 ATGGTTTATCGGCTCATCTTCTA 57.192 39.130 0.00 0.00 0.00 2.10
798 968 8.908903 TGAATTTACCTGTTGTTGTTTGAGTAT 58.091 29.630 0.00 0.00 0.00 2.12
799 969 8.282455 TGAATTTACCTGTTGTTGTTTGAGTA 57.718 30.769 0.00 0.00 0.00 2.59
800 970 7.093945 ACTGAATTTACCTGTTGTTGTTTGAGT 60.094 33.333 0.00 0.00 0.00 3.41
801 971 7.257722 ACTGAATTTACCTGTTGTTGTTTGAG 58.742 34.615 0.00 0.00 0.00 3.02
802 972 7.164230 ACTGAATTTACCTGTTGTTGTTTGA 57.836 32.000 0.00 0.00 0.00 2.69
803 973 8.967218 CATACTGAATTTACCTGTTGTTGTTTG 58.033 33.333 0.00 0.00 0.00 2.93
813 985 5.163519 CCAAAGCCCATACTGAATTTACCTG 60.164 44.000 0.00 0.00 0.00 4.00
816 988 5.394115 CCACCAAAGCCCATACTGAATTTAC 60.394 44.000 0.00 0.00 0.00 2.01
817 989 4.709397 CCACCAAAGCCCATACTGAATTTA 59.291 41.667 0.00 0.00 0.00 1.40
818 990 3.515104 CCACCAAAGCCCATACTGAATTT 59.485 43.478 0.00 0.00 0.00 1.82
821 993 1.272425 CCCACCAAAGCCCATACTGAA 60.272 52.381 0.00 0.00 0.00 3.02
825 999 2.058001 GGCCCACCAAAGCCCATAC 61.058 63.158 0.00 0.00 43.76 2.39
826 1000 2.362565 GGCCCACCAAAGCCCATA 59.637 61.111 0.00 0.00 43.76 2.74
831 1005 3.365265 CTCACGGCCCACCAAAGC 61.365 66.667 0.00 0.00 34.57 3.51
923 1101 0.911525 AGAGCTGTGTGGCCCACTAT 60.912 55.000 16.23 9.82 44.81 2.12
1192 1387 0.179065 TTGCGGATCAGCTGATGGAG 60.179 55.000 33.33 22.49 38.13 3.86
1229 1424 0.541863 GAAATTGGAGCGGGAGAGGA 59.458 55.000 0.00 0.00 0.00 3.71
1244 1439 5.758296 ACAACGCGGATCATGTATAAGAAAT 59.242 36.000 12.47 0.00 0.00 2.17
1245 1440 5.113383 ACAACGCGGATCATGTATAAGAAA 58.887 37.500 12.47 0.00 0.00 2.52
1252 1447 2.371910 TCAACAACGCGGATCATGTA 57.628 45.000 12.47 0.00 0.00 2.29
1256 1451 1.802069 TTCATCAACAACGCGGATCA 58.198 45.000 12.47 0.00 0.00 2.92
1265 1460 5.572211 GCTATCAGCGAATTTCATCAACAA 58.428 37.500 0.00 0.00 0.00 2.83
1281 1492 3.117738 ACCAGGGGAATTTGAGCTATCAG 60.118 47.826 0.00 0.00 36.61 2.90
1286 1497 0.779997 ACACCAGGGGAATTTGAGCT 59.220 50.000 0.00 0.00 0.00 4.09
1290 1501 1.960689 ACGAAACACCAGGGGAATTTG 59.039 47.619 0.00 0.00 0.00 2.32
1296 1507 1.795170 CTGCAACGAAACACCAGGGG 61.795 60.000 0.00 0.00 0.00 4.79
1297 1508 1.654220 CTGCAACGAAACACCAGGG 59.346 57.895 0.00 0.00 0.00 4.45
1298 1509 1.654220 CCTGCAACGAAACACCAGG 59.346 57.895 0.00 0.00 37.35 4.45
1300 1511 1.826054 CCCCTGCAACGAAACACCA 60.826 57.895 0.00 0.00 0.00 4.17
1301 1512 0.893727 ATCCCCTGCAACGAAACACC 60.894 55.000 0.00 0.00 0.00 4.16
1302 1513 1.816074 TATCCCCTGCAACGAAACAC 58.184 50.000 0.00 0.00 0.00 3.32
1309 1530 0.468226 TGGTCGATATCCCCTGCAAC 59.532 55.000 0.00 0.00 0.00 4.17
1339 1560 2.025727 GCATCATCCGCAGCAAGC 59.974 61.111 0.00 0.00 40.87 4.01
1348 1569 4.507969 GGGACCATGGCATCATCC 57.492 61.111 13.04 10.89 0.00 3.51
1366 1587 1.154908 CGACAACGGCGAAGAAACG 60.155 57.895 16.62 7.71 35.72 3.60
1426 1647 1.336609 ACTTTCGTCCGCTTCACTACC 60.337 52.381 0.00 0.00 0.00 3.18
1429 1650 3.196613 GACTTTCGTCCGCTTCACT 57.803 52.632 0.00 0.00 33.98 3.41
1488 1710 8.873144 AGGAACATAACTAACAAACTACTACCA 58.127 33.333 0.00 0.00 0.00 3.25
1489 1711 9.363763 GAGGAACATAACTAACAAACTACTACC 57.636 37.037 0.00 0.00 0.00 3.18
1499 1733 7.180229 TCTGAGGATTGAGGAACATAACTAACA 59.820 37.037 0.00 0.00 0.00 2.41
1511 1745 5.613698 AGGATATCTCTGAGGATTGAGGA 57.386 43.478 4.59 0.00 0.00 3.71
1512 1746 7.789202 TTTAGGATATCTCTGAGGATTGAGG 57.211 40.000 4.59 0.00 0.00 3.86
1513 1747 9.656040 CATTTTAGGATATCTCTGAGGATTGAG 57.344 37.037 4.59 0.00 0.00 3.02
1514 1748 8.099537 GCATTTTAGGATATCTCTGAGGATTGA 58.900 37.037 4.59 0.00 0.00 2.57
1515 1749 8.102047 AGCATTTTAGGATATCTCTGAGGATTG 58.898 37.037 4.59 0.00 0.00 2.67
1516 1750 8.217188 AGCATTTTAGGATATCTCTGAGGATT 57.783 34.615 4.59 0.00 0.00 3.01
1517 1751 7.811482 AGCATTTTAGGATATCTCTGAGGAT 57.189 36.000 4.59 0.00 0.00 3.24
1549 1783 2.729455 GCTGCACAACACATGCCA 59.271 55.556 0.00 0.00 42.69 4.92
1551 1785 2.048877 GGGCTGCACAACACATGC 60.049 61.111 0.50 0.00 43.68 4.06
1579 1813 0.317020 GGAAACTGCGCACTTGACAC 60.317 55.000 5.66 0.00 0.00 3.67
1608 1849 3.810941 GGACAAAACTACATGGTGAACGA 59.189 43.478 0.00 0.00 0.00 3.85
1610 1851 5.508200 TTGGACAAAACTACATGGTGAAC 57.492 39.130 0.00 0.00 0.00 3.18
1615 1856 7.601856 ACATGTATTTGGACAAAACTACATGG 58.398 34.615 30.64 21.66 43.61 3.66
1630 2034 8.991243 AGTTTCATGGAAATGACATGTATTTG 57.009 30.769 14.17 5.29 44.57 2.32
1671 2125 1.421410 CCGCGCACATGTCCTTACTC 61.421 60.000 8.75 0.00 0.00 2.59
1672 2126 1.447838 CCGCGCACATGTCCTTACT 60.448 57.895 8.75 0.00 0.00 2.24
1673 2127 1.296056 AACCGCGCACATGTCCTTAC 61.296 55.000 8.75 0.00 0.00 2.34
1674 2128 1.004320 AACCGCGCACATGTCCTTA 60.004 52.632 8.75 0.00 0.00 2.69
1675 2129 2.281484 AACCGCGCACATGTCCTT 60.281 55.556 8.75 0.00 0.00 3.36
1676 2130 2.742372 GAACCGCGCACATGTCCT 60.742 61.111 8.75 0.00 0.00 3.85
1677 2131 2.742372 AGAACCGCGCACATGTCC 60.742 61.111 8.75 0.00 0.00 4.02
1678 2132 2.317609 ACAGAACCGCGCACATGTC 61.318 57.895 8.75 0.00 0.00 3.06
1679 2133 2.280797 ACAGAACCGCGCACATGT 60.281 55.556 8.75 1.13 0.00 3.21
1680 2134 2.174107 CACAGAACCGCGCACATG 59.826 61.111 8.75 0.42 0.00 3.21
1681 2135 3.049674 CCACAGAACCGCGCACAT 61.050 61.111 8.75 0.00 0.00 3.21
1688 2142 4.988598 ACGGCTGCCACAGAACCG 62.989 66.667 20.29 10.77 40.89 4.44
1689 2143 3.357079 CACGGCTGCCACAGAACC 61.357 66.667 20.29 0.00 32.44 3.62
1690 2144 2.591715 ACACGGCTGCCACAGAAC 60.592 61.111 20.29 0.00 32.44 3.01
1691 2145 2.280797 GACACGGCTGCCACAGAA 60.281 61.111 20.29 0.00 32.44 3.02
1692 2146 2.994387 CTTGACACGGCTGCCACAGA 62.994 60.000 20.29 0.00 32.44 3.41
1693 2147 2.591429 TTGACACGGCTGCCACAG 60.591 61.111 20.29 9.89 34.12 3.66
1694 2148 2.034048 TACTTGACACGGCTGCCACA 62.034 55.000 20.29 9.86 0.00 4.17
1695 2149 0.882927 TTACTTGACACGGCTGCCAC 60.883 55.000 20.29 7.30 0.00 5.01
1696 2150 0.036164 ATTACTTGACACGGCTGCCA 59.964 50.000 20.29 0.00 0.00 4.92
1697 2151 0.447801 CATTACTTGACACGGCTGCC 59.552 55.000 9.11 9.11 0.00 4.85
1698 2152 0.179189 GCATTACTTGACACGGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
1699 2153 1.129251 CTGCATTACTTGACACGGCTG 59.871 52.381 0.00 0.00 0.00 4.85
1700 2154 1.270839 ACTGCATTACTTGACACGGCT 60.271 47.619 0.00 0.00 0.00 5.52
1701 2155 1.135972 CACTGCATTACTTGACACGGC 60.136 52.381 0.00 0.00 0.00 5.68
1702 2156 2.143122 ACACTGCATTACTTGACACGG 58.857 47.619 0.00 0.00 0.00 4.94
1703 2157 3.122948 GGTACACTGCATTACTTGACACG 59.877 47.826 0.00 0.00 0.00 4.49
1704 2158 4.152402 CAGGTACACTGCATTACTTGACAC 59.848 45.833 6.56 0.00 40.97 3.67
1705 2159 4.314961 CAGGTACACTGCATTACTTGACA 58.685 43.478 6.56 0.00 40.97 3.58
1706 2160 4.928661 CAGGTACACTGCATTACTTGAC 57.071 45.455 6.56 0.00 40.97 3.18
1718 2172 6.235231 TGAAGAGAAAGTTTCAGGTACACT 57.765 37.500 17.65 3.00 0.00 3.55
1719 2173 6.315393 TGTTGAAGAGAAAGTTTCAGGTACAC 59.685 38.462 17.65 7.89 35.01 2.90
1720 2174 6.411376 TGTTGAAGAGAAAGTTTCAGGTACA 58.589 36.000 17.65 10.26 35.01 2.90
1721 2175 6.920569 TGTTGAAGAGAAAGTTTCAGGTAC 57.079 37.500 17.65 8.11 35.01 3.34
1722 2176 7.054124 ACATGTTGAAGAGAAAGTTTCAGGTA 58.946 34.615 17.65 0.00 35.01 3.08
1723 2177 5.888161 ACATGTTGAAGAGAAAGTTTCAGGT 59.112 36.000 17.65 1.80 35.01 4.00
1724 2178 6.382869 ACATGTTGAAGAGAAAGTTTCAGG 57.617 37.500 17.65 0.00 35.01 3.86
1725 2179 7.041508 AGCTACATGTTGAAGAGAAAGTTTCAG 60.042 37.037 17.65 2.90 35.01 3.02
1726 2180 6.767902 AGCTACATGTTGAAGAGAAAGTTTCA 59.232 34.615 17.65 0.00 0.00 2.69
1727 2181 7.195839 AGCTACATGTTGAAGAGAAAGTTTC 57.804 36.000 11.66 7.57 0.00 2.78
1728 2182 7.573968 AAGCTACATGTTGAAGAGAAAGTTT 57.426 32.000 11.66 0.00 0.00 2.66
1729 2183 7.934120 ACTAAGCTACATGTTGAAGAGAAAGTT 59.066 33.333 11.66 0.00 0.00 2.66
1730 2184 7.445945 ACTAAGCTACATGTTGAAGAGAAAGT 58.554 34.615 11.66 1.28 0.00 2.66
1731 2185 7.600375 TGACTAAGCTACATGTTGAAGAGAAAG 59.400 37.037 11.66 0.00 0.00 2.62
1732 2186 7.441836 TGACTAAGCTACATGTTGAAGAGAAA 58.558 34.615 11.66 0.00 0.00 2.52
1733 2187 6.993079 TGACTAAGCTACATGTTGAAGAGAA 58.007 36.000 11.66 0.00 0.00 2.87
1734 2188 6.590234 TGACTAAGCTACATGTTGAAGAGA 57.410 37.500 11.66 0.00 0.00 3.10
1735 2189 7.093354 TCTTGACTAAGCTACATGTTGAAGAG 58.907 38.462 11.66 6.39 33.82 2.85
1736 2190 6.993079 TCTTGACTAAGCTACATGTTGAAGA 58.007 36.000 11.66 6.40 33.82 2.87
1737 2191 7.840342 ATCTTGACTAAGCTACATGTTGAAG 57.160 36.000 11.66 7.22 33.82 3.02
1738 2192 8.311109 TGTATCTTGACTAAGCTACATGTTGAA 58.689 33.333 11.66 0.00 39.36 2.69
1739 2193 7.836842 TGTATCTTGACTAAGCTACATGTTGA 58.163 34.615 11.66 0.00 39.36 3.18
1740 2194 7.223582 CCTGTATCTTGACTAAGCTACATGTTG 59.776 40.741 2.30 2.50 41.81 3.33
1741 2195 7.093289 ACCTGTATCTTGACTAAGCTACATGTT 60.093 37.037 2.30 0.00 41.81 2.71
1742 2196 6.381420 ACCTGTATCTTGACTAAGCTACATGT 59.619 38.462 2.69 2.69 41.81 3.21
1743 2197 6.810911 ACCTGTATCTTGACTAAGCTACATG 58.189 40.000 4.75 0.00 41.81 3.21
1744 2198 7.093289 ACAACCTGTATCTTGACTAAGCTACAT 60.093 37.037 4.75 0.00 41.81 2.29
1745 2199 6.210784 ACAACCTGTATCTTGACTAAGCTACA 59.789 38.462 0.00 0.00 40.98 2.74
1746 2200 6.631962 ACAACCTGTATCTTGACTAAGCTAC 58.368 40.000 0.00 0.00 36.51 3.58
1747 2201 6.852420 ACAACCTGTATCTTGACTAAGCTA 57.148 37.500 0.00 0.00 33.82 3.32
1748 2202 5.746990 ACAACCTGTATCTTGACTAAGCT 57.253 39.130 0.00 0.00 33.82 3.74
1749 2203 6.128254 GGAAACAACCTGTATCTTGACTAAGC 60.128 42.308 0.00 0.00 33.82 3.09
1750 2204 6.934645 TGGAAACAACCTGTATCTTGACTAAG 59.065 38.462 0.00 0.00 37.44 2.18
1751 2205 6.833041 TGGAAACAACCTGTATCTTGACTAA 58.167 36.000 0.00 0.00 37.44 2.24
1752 2206 6.428083 TGGAAACAACCTGTATCTTGACTA 57.572 37.500 0.00 0.00 37.44 2.59
1753 2207 5.304686 TGGAAACAACCTGTATCTTGACT 57.695 39.130 0.00 0.00 37.44 3.41
1766 2220 7.441458 ACTCTTAGTAAGTGTCATGGAAACAAC 59.559 37.037 11.03 0.00 35.51 3.32
1767 2221 7.441157 CACTCTTAGTAAGTGTCATGGAAACAA 59.559 37.037 13.40 0.00 40.88 2.83
1768 2222 6.929049 CACTCTTAGTAAGTGTCATGGAAACA 59.071 38.462 13.40 0.00 41.36 2.83
1769 2223 7.352719 CACTCTTAGTAAGTGTCATGGAAAC 57.647 40.000 13.40 0.00 39.42 2.78
1780 2234 6.115448 AGCATCCAAACACTCTTAGTAAGT 57.885 37.500 9.71 0.00 0.00 2.24
1781 2235 6.128172 CCAAGCATCCAAACACTCTTAGTAAG 60.128 42.308 3.29 3.29 0.00 2.34
1782 2236 5.705441 CCAAGCATCCAAACACTCTTAGTAA 59.295 40.000 0.00 0.00 0.00 2.24
1783 2237 5.221843 ACCAAGCATCCAAACACTCTTAGTA 60.222 40.000 0.00 0.00 0.00 1.82
1784 2238 4.074970 CCAAGCATCCAAACACTCTTAGT 58.925 43.478 0.00 0.00 0.00 2.24
1785 2239 4.074970 ACCAAGCATCCAAACACTCTTAG 58.925 43.478 0.00 0.00 0.00 2.18
1786 2240 4.098914 ACCAAGCATCCAAACACTCTTA 57.901 40.909 0.00 0.00 0.00 2.10
1787 2241 2.949447 ACCAAGCATCCAAACACTCTT 58.051 42.857 0.00 0.00 0.00 2.85
1788 2242 2.664402 ACCAAGCATCCAAACACTCT 57.336 45.000 0.00 0.00 0.00 3.24
1789 2243 3.758554 ACATACCAAGCATCCAAACACTC 59.241 43.478 0.00 0.00 0.00 3.51
1790 2244 3.758554 GACATACCAAGCATCCAAACACT 59.241 43.478 0.00 0.00 0.00 3.55
1791 2245 3.426159 CGACATACCAAGCATCCAAACAC 60.426 47.826 0.00 0.00 0.00 3.32
1792 2246 2.746904 CGACATACCAAGCATCCAAACA 59.253 45.455 0.00 0.00 0.00 2.83
1793 2247 2.097466 CCGACATACCAAGCATCCAAAC 59.903 50.000 0.00 0.00 0.00 2.93
1794 2248 2.026729 TCCGACATACCAAGCATCCAAA 60.027 45.455 0.00 0.00 0.00 3.28
1795 2249 1.557371 TCCGACATACCAAGCATCCAA 59.443 47.619 0.00 0.00 0.00 3.53
1796 2250 1.199615 TCCGACATACCAAGCATCCA 58.800 50.000 0.00 0.00 0.00 3.41
1797 2251 1.940613 GTTCCGACATACCAAGCATCC 59.059 52.381 0.00 0.00 0.00 3.51
1798 2252 1.940613 GGTTCCGACATACCAAGCATC 59.059 52.381 0.00 0.00 34.48 3.91
1799 2253 1.280710 TGGTTCCGACATACCAAGCAT 59.719 47.619 0.00 0.00 41.30 3.79
1800 2254 0.687920 TGGTTCCGACATACCAAGCA 59.312 50.000 0.00 0.00 41.30 3.91
1801 2255 1.084289 GTGGTTCCGACATACCAAGC 58.916 55.000 0.00 0.00 45.45 4.01
1802 2256 1.002659 TGGTGGTTCCGACATACCAAG 59.997 52.381 0.00 0.00 45.45 3.61
1803 2257 1.057471 TGGTGGTTCCGACATACCAA 58.943 50.000 0.00 0.00 45.45 3.67
1804 2258 1.057471 TTGGTGGTTCCGACATACCA 58.943 50.000 0.00 0.00 41.97 3.25
1805 2259 1.445871 GTTGGTGGTTCCGACATACC 58.554 55.000 0.00 0.00 47.00 2.73
1820 2274 4.682778 TTATCTTCTCCATACCGGTTGG 57.317 45.455 15.04 20.12 42.84 3.77
1821 2275 4.511826 GCTTTATCTTCTCCATACCGGTTG 59.488 45.833 15.04 11.19 35.57 3.77
1822 2276 4.163458 TGCTTTATCTTCTCCATACCGGTT 59.837 41.667 15.04 0.00 35.57 4.44
1823 2277 3.709653 TGCTTTATCTTCTCCATACCGGT 59.290 43.478 13.98 13.98 35.57 5.28
1824 2278 4.336889 TGCTTTATCTTCTCCATACCGG 57.663 45.455 0.00 0.00 0.00 5.28
1825 2279 6.591834 CCTAATGCTTTATCTTCTCCATACCG 59.408 42.308 0.00 0.00 0.00 4.02
1826 2280 6.372937 GCCTAATGCTTTATCTTCTCCATACC 59.627 42.308 0.00 0.00 36.87 2.73
1827 2281 6.091441 CGCCTAATGCTTTATCTTCTCCATAC 59.909 42.308 0.00 0.00 38.05 2.39
1828 2282 6.166279 CGCCTAATGCTTTATCTTCTCCATA 58.834 40.000 0.00 0.00 38.05 2.74
1829 2283 4.999950 CGCCTAATGCTTTATCTTCTCCAT 59.000 41.667 0.00 0.00 38.05 3.41
1830 2284 4.380531 CGCCTAATGCTTTATCTTCTCCA 58.619 43.478 0.00 0.00 38.05 3.86
1831 2285 3.187432 GCGCCTAATGCTTTATCTTCTCC 59.813 47.826 0.00 0.00 38.05 3.71
1832 2286 3.809832 TGCGCCTAATGCTTTATCTTCTC 59.190 43.478 4.18 0.00 38.05 2.87
1833 2287 3.808728 TGCGCCTAATGCTTTATCTTCT 58.191 40.909 4.18 0.00 38.05 2.85
1834 2288 4.214119 TCATGCGCCTAATGCTTTATCTTC 59.786 41.667 4.18 0.00 38.05 2.87
1835 2289 4.136796 TCATGCGCCTAATGCTTTATCTT 58.863 39.130 4.18 0.00 38.05 2.40
1836 2290 3.743521 TCATGCGCCTAATGCTTTATCT 58.256 40.909 4.18 0.00 38.05 1.98
1837 2291 4.470462 CTTCATGCGCCTAATGCTTTATC 58.530 43.478 4.18 0.00 38.05 1.75
1838 2292 3.304928 GCTTCATGCGCCTAATGCTTTAT 60.305 43.478 4.18 0.00 38.05 1.40
1839 2293 2.033299 GCTTCATGCGCCTAATGCTTTA 59.967 45.455 4.18 0.00 38.05 1.85
1840 2294 1.202336 GCTTCATGCGCCTAATGCTTT 60.202 47.619 4.18 0.00 38.05 3.51
1841 2295 0.383231 GCTTCATGCGCCTAATGCTT 59.617 50.000 4.18 0.00 38.05 3.91
1842 2296 2.028130 GCTTCATGCGCCTAATGCT 58.972 52.632 4.18 0.00 38.05 3.79
1843 2297 4.622364 GCTTCATGCGCCTAATGC 57.378 55.556 4.18 0.00 0.00 3.56
1845 2299 8.563127 TGCATAAAAAGCTTCATGCGCCTAAT 62.563 38.462 24.15 0.00 45.31 1.73
1846 2300 7.342936 TGCATAAAAAGCTTCATGCGCCTAA 62.343 40.000 24.15 11.84 45.31 2.69
1847 2301 5.933291 TGCATAAAAAGCTTCATGCGCCTA 61.933 41.667 24.15 12.09 45.31 3.93
1942 2758 8.887717 TGTTTTCCAACCAACATAAAAATTCAG 58.112 29.630 0.00 0.00 31.02 3.02
1950 2987 5.105146 AGCAAGTGTTTTCCAACCAACATAA 60.105 36.000 0.00 0.00 35.40 1.90
1954 2991 3.245518 AGCAAGTGTTTTCCAACCAAC 57.754 42.857 0.00 0.00 31.02 3.77
1985 3022 9.387257 CTACATGCTCATTATTATATTCCAGCA 57.613 33.333 0.00 0.00 39.81 4.41
2029 3232 1.808945 CACCAGTTCATGAAGTCTGCC 59.191 52.381 13.00 0.00 0.00 4.85
2290 3602 4.529897 TGGACCTATCGCAGAAAGTAGTA 58.470 43.478 0.00 0.00 43.58 1.82
2291 3603 3.362706 TGGACCTATCGCAGAAAGTAGT 58.637 45.455 0.00 0.00 43.58 2.73
2292 3604 3.632604 TCTGGACCTATCGCAGAAAGTAG 59.367 47.826 0.00 0.00 43.58 2.57
2447 3769 2.989166 GGTAAAATGTGAGCAGCTTTGC 59.011 45.455 0.00 0.00 0.00 3.68
2462 3786 7.716799 ATTTATTGCAGACATGGAGGTAAAA 57.283 32.000 0.00 0.00 29.38 1.52
2468 3792 9.674824 GAGATTTAATTTATTGCAGACATGGAG 57.325 33.333 0.00 0.00 0.00 3.86
2474 3798 9.455847 GGTGATGAGATTTAATTTATTGCAGAC 57.544 33.333 0.00 0.00 0.00 3.51
2508 3842 0.730834 CTCTTCTGCAGTGTCGTCGG 60.731 60.000 14.67 0.00 0.00 4.79
2877 4583 3.130633 CAACAAACAGATGGACGAGACA 58.869 45.455 0.00 0.00 0.00 3.41
2882 4588 5.362556 AAATCTCAACAAACAGATGGACG 57.637 39.130 0.00 0.00 29.40 4.79
2891 4597 9.736023 ATTGTTCTTCAGTAAATCTCAACAAAC 57.264 29.630 0.00 0.00 36.41 2.93
2936 4642 5.450385 GCAAACGAGATCATGAATTCTTTCG 59.550 40.000 7.05 8.92 34.39 3.46
2938 4645 5.416952 AGGCAAACGAGATCATGAATTCTTT 59.583 36.000 7.05 0.00 0.00 2.52
2947 4654 1.278985 TGGTCAGGCAAACGAGATCAT 59.721 47.619 0.00 0.00 0.00 2.45
2993 4700 4.873817 TGTCTTGAAAGATTTCGTACGGA 58.126 39.130 16.52 2.84 40.01 4.69
2994 4701 5.779806 ATGTCTTGAAAGATTTCGTACGG 57.220 39.130 16.52 0.00 40.01 4.02
2995 4702 6.031417 GCAAATGTCTTGAAAGATTTCGTACG 59.969 38.462 9.53 9.53 40.01 3.67
2996 4703 7.078228 AGCAAATGTCTTGAAAGATTTCGTAC 58.922 34.615 0.00 0.65 40.01 3.67
3020 4727 4.518211 ACCAGAGCAAATGTCTTGAAAGAG 59.482 41.667 0.00 0.00 35.32 2.85
3021 4728 4.464008 ACCAGAGCAAATGTCTTGAAAGA 58.536 39.130 0.00 0.00 0.00 2.52
3022 4729 4.843220 ACCAGAGCAAATGTCTTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
3023 4730 4.644234 TCAACCAGAGCAAATGTCTTGAAA 59.356 37.500 0.00 0.00 0.00 2.69
3024 4731 4.036734 GTCAACCAGAGCAAATGTCTTGAA 59.963 41.667 0.00 0.00 0.00 2.69
3025 4732 3.565482 GTCAACCAGAGCAAATGTCTTGA 59.435 43.478 0.00 0.00 0.00 3.02
3026 4733 3.316029 TGTCAACCAGAGCAAATGTCTTG 59.684 43.478 0.00 0.00 0.00 3.02
3027 4734 3.554934 TGTCAACCAGAGCAAATGTCTT 58.445 40.909 0.00 0.00 0.00 3.01
3028 4735 3.213206 TGTCAACCAGAGCAAATGTCT 57.787 42.857 0.00 0.00 0.00 3.41
3029 4736 3.988379 TTGTCAACCAGAGCAAATGTC 57.012 42.857 0.00 0.00 0.00 3.06
3030 4737 3.890756 TCATTGTCAACCAGAGCAAATGT 59.109 39.130 0.00 0.00 0.00 2.71
3031 4738 4.508461 TCATTGTCAACCAGAGCAAATG 57.492 40.909 0.00 0.00 0.00 2.32
3032 4739 5.733620 ATTCATTGTCAACCAGAGCAAAT 57.266 34.783 0.00 0.00 0.00 2.32
3033 4740 6.265196 ACTTATTCATTGTCAACCAGAGCAAA 59.735 34.615 0.00 0.00 0.00 3.68
3034 4741 5.769662 ACTTATTCATTGTCAACCAGAGCAA 59.230 36.000 0.00 0.00 0.00 3.91
3035 4742 5.316167 ACTTATTCATTGTCAACCAGAGCA 58.684 37.500 0.00 0.00 0.00 4.26
3036 4743 5.886960 ACTTATTCATTGTCAACCAGAGC 57.113 39.130 0.00 0.00 0.00 4.09
3041 4748 6.431234 AGAGGTCAACTTATTCATTGTCAACC 59.569 38.462 0.00 0.00 0.00 3.77
3095 4923 3.130633 TCAAGAAACAGACCGACATGTG 58.869 45.455 1.15 0.00 0.00 3.21
3117 4948 1.693062 TGGTTTACCTCGCAACCAGTA 59.307 47.619 0.16 0.00 46.16 2.74
3118 4949 0.470766 TGGTTTACCTCGCAACCAGT 59.529 50.000 0.16 0.00 46.16 4.00
3119 4950 3.315765 TGGTTTACCTCGCAACCAG 57.684 52.632 0.16 0.00 46.16 4.00
3122 4953 3.636282 AAATGTGGTTTACCTCGCAAC 57.364 42.857 0.00 0.00 36.82 4.17
3123 4954 3.632604 TCAAAATGTGGTTTACCTCGCAA 59.367 39.130 0.00 0.00 36.82 4.85
3124 4955 3.215151 TCAAAATGTGGTTTACCTCGCA 58.785 40.909 0.00 0.00 36.82 5.10
3125 4956 3.907894 TCAAAATGTGGTTTACCTCGC 57.092 42.857 0.00 0.00 36.82 5.03
3126 4957 7.707774 AAAATTCAAAATGTGGTTTACCTCG 57.292 32.000 0.00 0.00 36.82 4.63
3158 5032 1.351017 TCAACTTCTGGATCCCACACC 59.649 52.381 9.90 0.00 0.00 4.16
3166 5043 6.125029 CACCCTTGAATATCAACTTCTGGAT 58.875 40.000 0.00 0.00 32.21 3.41
3167 5044 5.014123 ACACCCTTGAATATCAACTTCTGGA 59.986 40.000 0.00 0.00 32.21 3.86
3168 5045 5.256474 ACACCCTTGAATATCAACTTCTGG 58.744 41.667 0.00 0.00 32.21 3.86
3183 5083 1.339929 GCCACAACCTAAACACCCTTG 59.660 52.381 0.00 0.00 0.00 3.61
3222 5144 5.850557 AACACCATTCATGACAACTTTCA 57.149 34.783 0.00 0.00 0.00 2.69
3223 5145 8.081633 TGATTAACACCATTCATGACAACTTTC 58.918 33.333 0.00 0.00 0.00 2.62
3232 5154 5.902613 ACCACTGATTAACACCATTCATG 57.097 39.130 0.00 0.00 0.00 3.07
3375 5302 7.730364 AACCTAATAATACTCCGATTTGCTG 57.270 36.000 0.00 0.00 0.00 4.41
3403 5331 6.183360 GCAGGCCGGACTTAAATTTTAAAATG 60.183 38.462 7.41 4.56 0.00 2.32
3487 5415 4.900635 ACAAGTGTCATGGTTTCAGTTC 57.099 40.909 0.00 0.00 0.00 3.01
3492 5420 5.004922 TCCAAAACAAGTGTCATGGTTTC 57.995 39.130 12.58 0.00 35.59 2.78
3502 5430 1.336755 CCCTCCGTTCCAAAACAAGTG 59.663 52.381 0.00 0.00 34.93 3.16
3551 5479 0.239347 CTGCTTTCAGTCCGGCAAAG 59.761 55.000 0.00 3.63 35.61 2.77
3579 5507 4.696877 TGCAAAGAACTATGTCCACATCAG 59.303 41.667 0.00 0.00 37.76 2.90
3588 5516 4.003648 GCTAGGTGTGCAAAGAACTATGT 58.996 43.478 0.00 0.00 0.00 2.29
3591 5519 2.611971 CCGCTAGGTGTGCAAAGAACTA 60.612 50.000 0.00 0.00 0.00 2.24
3611 5540 0.398318 AAGTCTGTCTTGACTGGGCC 59.602 55.000 0.00 0.00 45.49 5.80
3637 5567 6.701400 CACTTACATTTTCTTGTTTCCCCTTG 59.299 38.462 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.