Multiple sequence alignment - TraesCS1D01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G024700 chr1D 100.000 3751 0 0 1 3751 10379678 10383428 0.000000e+00 6927
1 TraesCS1D01G024700 chr1D 95.946 148 6 0 1145 1292 167392421 167392274 1.350000e-59 241
2 TraesCS1D01G024700 chr1D 96.032 126 5 0 1178 1303 90163050 90162925 4.910000e-49 206
3 TraesCS1D01G024700 chr1D 94.915 118 6 0 738 855 167392536 167392419 6.400000e-43 185
4 TraesCS1D01G024700 chr1D 88.742 151 7 7 1551 1697 90162932 90162788 3.850000e-40 176
5 TraesCS1D01G024700 chr1A 84.969 3067 252 114 625 3583 12096155 12099120 0.000000e+00 2916
6 TraesCS1D01G024700 chr1A 92.053 151 10 1 3600 3750 12099255 12099403 1.060000e-50 211
7 TraesCS1D01G024700 chr1B 85.827 1397 118 41 1690 3038 15289079 15290443 0.000000e+00 1410
8 TraesCS1D01G024700 chr1B 80.266 527 37 35 626 1119 15287923 15288415 6.000000e-88 335
9 TraesCS1D01G024700 chr1B 83.288 371 19 21 25 358 15287262 15287626 6.090000e-78 302
10 TraesCS1D01G024700 chr1B 90.455 220 17 4 1424 1640 15288615 15288833 1.700000e-73 287
11 TraesCS1D01G024700 chr1B 92.896 183 12 1 1424 1605 229730221 229730403 7.990000e-67 265
12 TraesCS1D01G024700 chr1B 91.758 182 8 4 3570 3751 15290915 15291089 2.890000e-61 246
13 TraesCS1D01G024700 chr1B 83.630 281 20 16 3366 3638 15290670 15290932 1.350000e-59 241
14 TraesCS1D01G024700 chr1B 96.739 92 3 0 738 829 197864771 197864680 1.800000e-33 154
15 TraesCS1D01G024700 chr4D 92.379 643 34 10 1145 1780 183237921 183237287 0.000000e+00 902
16 TraesCS1D01G024700 chr4D 96.610 118 4 0 738 855 183238036 183237919 2.960000e-46 196
17 TraesCS1D01G024700 chr7D 92.093 645 35 13 1145 1780 564640828 564640191 0.000000e+00 894
18 TraesCS1D01G024700 chr7D 94.915 118 6 0 738 855 564640943 564640826 6.400000e-43 185
19 TraesCS1D01G024700 chr7D 93.162 117 8 0 416 532 205549981 205550097 4.980000e-39 172
20 TraesCS1D01G024700 chr5D 90.184 652 34 18 1148 1780 448285716 448285076 0.000000e+00 822
21 TraesCS1D01G024700 chr5D 91.406 128 10 1 405 532 353750382 353750256 1.380000e-39 174
22 TraesCS1D01G024700 chr3A 92.586 553 32 7 1111 1662 692034933 692035477 0.000000e+00 785
23 TraesCS1D01G024700 chr3A 96.154 130 4 1 738 867 692034753 692034881 1.060000e-50 211
24 TraesCS1D01G024700 chr3B 86.888 511 33 20 1462 1959 46902357 46901868 3.300000e-150 542
25 TraesCS1D01G024700 chr3B 86.667 510 35 21 1462 1959 46931636 46931148 5.510000e-148 534
26 TraesCS1D01G024700 chr3B 96.739 92 3 0 738 829 281516140 281516231 1.800000e-33 154
27 TraesCS1D01G024700 chr3B 95.652 92 4 0 738 829 16880335 16880244 8.390000e-32 148
28 TraesCS1D01G024700 chr4A 93.388 121 8 0 412 532 3001168 3001288 2.980000e-41 180
29 TraesCS1D01G024700 chr2D 92.562 121 8 1 413 532 647763096 647763216 4.980000e-39 172
30 TraesCS1D01G024700 chr2D 92.500 120 8 1 413 532 619428145 619428263 1.790000e-38 171
31 TraesCS1D01G024700 chr2D 93.043 115 8 0 416 530 590369644 590369530 6.440000e-38 169
32 TraesCS1D01G024700 chr2D 92.308 117 9 0 416 532 623492236 623492352 2.320000e-37 167
33 TraesCS1D01G024700 chr6D 91.200 125 10 1 408 532 141141489 141141612 6.440000e-38 169
34 TraesCS1D01G024700 chr5B 92.308 117 9 0 416 532 61502791 61502907 2.320000e-37 167
35 TraesCS1D01G024700 chr4B 96.739 92 3 0 738 829 84533921 84533830 1.800000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G024700 chr1D 10379678 10383428 3750 False 6927.000000 6927 100.000000 1 3751 1 chr1D.!!$F1 3750
1 TraesCS1D01G024700 chr1A 12096155 12099403 3248 False 1563.500000 2916 88.511000 625 3750 2 chr1A.!!$F1 3125
2 TraesCS1D01G024700 chr1B 15287262 15291089 3827 False 470.166667 1410 85.870667 25 3751 6 chr1B.!!$F2 3726
3 TraesCS1D01G024700 chr4D 183237287 183238036 749 True 549.000000 902 94.494500 738 1780 2 chr4D.!!$R1 1042
4 TraesCS1D01G024700 chr7D 564640191 564640943 752 True 539.500000 894 93.504000 738 1780 2 chr7D.!!$R1 1042
5 TraesCS1D01G024700 chr5D 448285076 448285716 640 True 822.000000 822 90.184000 1148 1780 1 chr5D.!!$R2 632
6 TraesCS1D01G024700 chr3A 692034753 692035477 724 False 498.000000 785 94.370000 738 1662 2 chr3A.!!$F1 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 442 0.104304 ATGGACGAGACCAATACCGC 59.896 55.0 0.00 0.0 43.47 5.68 F
401 444 0.175073 GGACGAGACCAATACCGCTT 59.825 55.0 0.00 0.0 0.00 4.68 F
1858 2353 0.108233 CTCTTCTCAGAGGCACTGGC 60.108 60.0 12.06 0.0 45.76 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1645 0.678048 AGAGATCAAAACGCAGGCCC 60.678 55.0 0.0 0.0 0.00 5.80 R
2323 2841 0.987294 CTCCTGCCCTGGAAGAAGAA 59.013 55.0 0.0 0.0 35.43 2.52 R
3270 3832 0.250640 AAGCTGGCTTCTGGTGTCTG 60.251 55.0 1.6 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.780902 CCCAGGTCTCAAACAAACAAAC 58.219 45.455 0.00 0.00 0.00 2.93
22 23 3.434637 CCAGGTCTCAAACAAACAAACG 58.565 45.455 0.00 0.00 0.00 3.60
23 24 2.851824 CAGGTCTCAAACAAACAAACGC 59.148 45.455 0.00 0.00 0.00 4.84
28 29 1.989165 TCAAACAAACAAACGCACTGC 59.011 42.857 0.00 0.00 0.00 4.40
40 41 1.879380 ACGCACTGCATGTACACATTT 59.121 42.857 0.00 0.00 33.61 2.32
42 43 2.657848 CGCACTGCATGTACACATTTTG 59.342 45.455 0.00 0.00 33.61 2.44
43 44 3.641648 GCACTGCATGTACACATTTTGT 58.358 40.909 0.00 0.00 42.84 2.83
44 45 4.050553 GCACTGCATGTACACATTTTGTT 58.949 39.130 0.00 0.00 39.91 2.83
47 48 6.639212 CACTGCATGTACACATTTTGTTTTC 58.361 36.000 0.00 0.00 39.91 2.29
56 59 4.635324 ACACATTTTGTTTTCCTTTGCTGG 59.365 37.500 0.00 0.00 33.09 4.85
67 70 1.345415 CCTTTGCTGGCACTTTCCAAT 59.655 47.619 0.00 0.00 35.36 3.16
135 142 7.871853 TGTTACTTATTGGAAAGAGAAGCAAC 58.128 34.615 0.00 0.00 0.00 4.17
140 147 8.734386 ACTTATTGGAAAGAGAAGCAACATAAG 58.266 33.333 0.00 0.00 0.00 1.73
141 148 5.964958 TTGGAAAGAGAAGCAACATAAGG 57.035 39.130 0.00 0.00 0.00 2.69
142 149 3.758554 TGGAAAGAGAAGCAACATAAGGC 59.241 43.478 0.00 0.00 0.00 4.35
143 150 3.129462 GGAAAGAGAAGCAACATAAGGCC 59.871 47.826 0.00 0.00 0.00 5.19
165 172 5.451242 GCCGGCCATGAAGACAATTAATTAA 60.451 40.000 18.11 0.00 0.00 1.40
166 173 6.208644 CCGGCCATGAAGACAATTAATTAAG 58.791 40.000 2.24 0.00 0.00 1.85
184 191 5.934402 TTAAGAGTTAGATCAGGACACCC 57.066 43.478 0.00 0.00 0.00 4.61
193 200 2.516227 TCAGGACACCCACAAACAAA 57.484 45.000 0.00 0.00 33.88 2.83
198 205 1.136110 GACACCCACAAACAAACCTGG 59.864 52.381 0.00 0.00 0.00 4.45
199 206 0.179086 CACCCACAAACAAACCTGGC 60.179 55.000 0.00 0.00 0.00 4.85
203 210 1.140652 CCACAAACAAACCTGGCCATT 59.859 47.619 5.51 0.00 0.00 3.16
243 275 1.921982 TTAACCACATGCCACATGCT 58.078 45.000 7.46 0.00 42.00 3.79
245 277 0.251474 AACCACATGCCACATGCTCT 60.251 50.000 7.46 0.00 42.00 4.09
247 279 0.393944 CCACATGCCACATGCTCTCT 60.394 55.000 7.46 0.00 42.00 3.10
249 281 2.486727 CCACATGCCACATGCTCTCTAT 60.487 50.000 7.46 0.00 42.00 1.98
250 282 3.244318 CCACATGCCACATGCTCTCTATA 60.244 47.826 7.46 0.00 42.00 1.31
251 283 4.383173 CACATGCCACATGCTCTCTATAA 58.617 43.478 7.46 0.00 42.00 0.98
252 284 5.001874 CACATGCCACATGCTCTCTATAAT 58.998 41.667 7.46 0.00 42.00 1.28
253 285 5.001874 ACATGCCACATGCTCTCTATAATG 58.998 41.667 7.46 0.00 42.00 1.90
254 286 4.694760 TGCCACATGCTCTCTATAATGT 57.305 40.909 0.00 0.00 42.00 2.71
256 288 5.059161 TGCCACATGCTCTCTATAATGTTC 58.941 41.667 0.00 0.00 42.00 3.18
257 289 5.163269 TGCCACATGCTCTCTATAATGTTCT 60.163 40.000 0.00 0.00 42.00 3.01
258 290 5.407995 GCCACATGCTCTCTATAATGTTCTC 59.592 44.000 0.00 0.00 36.87 2.87
341 379 2.355010 AATATGCCTTGAGAGTGCCC 57.645 50.000 0.00 0.00 0.00 5.36
370 413 7.118723 TGCTTAATCCAAAGTCACATTAGGAT 58.881 34.615 0.00 0.00 37.46 3.24
375 418 8.970859 AATCCAAAGTCACATTAGGATAAGAG 57.029 34.615 0.00 0.00 34.95 2.85
376 419 6.349300 TCCAAAGTCACATTAGGATAAGAGC 58.651 40.000 0.00 0.00 0.00 4.09
377 420 6.070251 TCCAAAGTCACATTAGGATAAGAGCA 60.070 38.462 0.00 0.00 0.00 4.26
378 421 6.599244 CCAAAGTCACATTAGGATAAGAGCAA 59.401 38.462 0.00 0.00 0.00 3.91
379 422 7.201679 CCAAAGTCACATTAGGATAAGAGCAAG 60.202 40.741 0.00 0.00 0.00 4.01
380 423 6.798427 AGTCACATTAGGATAAGAGCAAGA 57.202 37.500 0.00 0.00 0.00 3.02
381 424 7.372260 AGTCACATTAGGATAAGAGCAAGAT 57.628 36.000 0.00 0.00 0.00 2.40
382 425 7.215789 AGTCACATTAGGATAAGAGCAAGATG 58.784 38.462 0.00 0.00 0.00 2.90
383 426 6.426328 GTCACATTAGGATAAGAGCAAGATGG 59.574 42.308 0.00 0.00 0.00 3.51
384 427 6.327365 TCACATTAGGATAAGAGCAAGATGGA 59.673 38.462 0.00 0.00 0.00 3.41
385 428 6.426328 CACATTAGGATAAGAGCAAGATGGAC 59.574 42.308 0.00 0.00 0.00 4.02
386 429 3.742433 AGGATAAGAGCAAGATGGACG 57.258 47.619 0.00 0.00 0.00 4.79
387 430 3.300388 AGGATAAGAGCAAGATGGACGA 58.700 45.455 0.00 0.00 0.00 4.20
388 431 3.320541 AGGATAAGAGCAAGATGGACGAG 59.679 47.826 0.00 0.00 0.00 4.18
389 432 3.319405 GGATAAGAGCAAGATGGACGAGA 59.681 47.826 0.00 0.00 0.00 4.04
390 433 2.663826 AAGAGCAAGATGGACGAGAC 57.336 50.000 0.00 0.00 0.00 3.36
393 436 0.976641 AGCAAGATGGACGAGACCAA 59.023 50.000 0.00 0.00 43.47 3.67
394 437 1.556911 AGCAAGATGGACGAGACCAAT 59.443 47.619 0.00 0.00 43.47 3.16
395 438 2.766263 AGCAAGATGGACGAGACCAATA 59.234 45.455 0.00 0.00 43.47 1.90
396 439 2.866762 GCAAGATGGACGAGACCAATAC 59.133 50.000 0.00 0.00 43.47 1.89
397 440 3.458189 CAAGATGGACGAGACCAATACC 58.542 50.000 0.00 0.00 43.47 2.73
398 441 1.681793 AGATGGACGAGACCAATACCG 59.318 52.381 0.00 0.00 43.47 4.02
399 442 0.104304 ATGGACGAGACCAATACCGC 59.896 55.000 0.00 0.00 43.47 5.68
400 443 0.968901 TGGACGAGACCAATACCGCT 60.969 55.000 0.00 0.00 36.96 5.52
401 444 0.175073 GGACGAGACCAATACCGCTT 59.825 55.000 0.00 0.00 0.00 4.68
402 445 1.405121 GGACGAGACCAATACCGCTTT 60.405 52.381 0.00 0.00 0.00 3.51
403 446 1.659098 GACGAGACCAATACCGCTTTG 59.341 52.381 0.00 0.00 0.00 2.77
404 447 1.001633 ACGAGACCAATACCGCTTTGT 59.998 47.619 0.00 0.00 0.00 2.83
405 448 2.073816 CGAGACCAATACCGCTTTGTT 58.926 47.619 0.00 0.00 0.00 2.83
406 449 2.482721 CGAGACCAATACCGCTTTGTTT 59.517 45.455 0.00 0.00 0.00 2.83
407 450 3.058501 CGAGACCAATACCGCTTTGTTTT 60.059 43.478 0.00 0.00 0.00 2.43
408 451 4.152759 CGAGACCAATACCGCTTTGTTTTA 59.847 41.667 0.00 0.00 0.00 1.52
409 452 5.163794 CGAGACCAATACCGCTTTGTTTTAT 60.164 40.000 0.00 0.00 0.00 1.40
410 453 6.036300 CGAGACCAATACCGCTTTGTTTTATA 59.964 38.462 0.00 0.00 0.00 0.98
411 454 7.316544 AGACCAATACCGCTTTGTTTTATAG 57.683 36.000 0.00 0.00 0.00 1.31
412 455 6.882678 AGACCAATACCGCTTTGTTTTATAGT 59.117 34.615 0.00 0.00 0.00 2.12
413 456 8.042515 AGACCAATACCGCTTTGTTTTATAGTA 58.957 33.333 0.00 0.00 0.00 1.82
414 457 7.977904 ACCAATACCGCTTTGTTTTATAGTAC 58.022 34.615 0.00 0.00 0.00 2.73
415 458 7.825761 ACCAATACCGCTTTGTTTTATAGTACT 59.174 33.333 0.00 0.00 0.00 2.73
416 459 9.316730 CCAATACCGCTTTGTTTTATAGTACTA 57.683 33.333 4.77 4.77 0.00 1.82
419 462 9.741647 ATACCGCTTTGTTTTATAGTACTACTC 57.258 33.333 4.31 0.00 0.00 2.59
420 463 7.038048 ACCGCTTTGTTTTATAGTACTACTCC 58.962 38.462 4.31 0.00 0.00 3.85
421 464 6.478016 CCGCTTTGTTTTATAGTACTACTCCC 59.522 42.308 4.31 0.00 0.00 4.30
422 465 7.263496 CGCTTTGTTTTATAGTACTACTCCCT 58.737 38.462 4.31 0.00 0.00 4.20
423 466 7.434602 CGCTTTGTTTTATAGTACTACTCCCTC 59.565 40.741 4.31 0.00 0.00 4.30
424 467 7.710044 GCTTTGTTTTATAGTACTACTCCCTCC 59.290 40.741 4.31 0.00 0.00 4.30
425 468 6.949352 TGTTTTATAGTACTACTCCCTCCG 57.051 41.667 4.31 0.00 0.00 4.63
426 469 6.426587 TGTTTTATAGTACTACTCCCTCCGT 58.573 40.000 4.31 0.00 0.00 4.69
427 470 6.891908 TGTTTTATAGTACTACTCCCTCCGTT 59.108 38.462 4.31 0.00 0.00 4.44
428 471 7.067494 TGTTTTATAGTACTACTCCCTCCGTTC 59.933 40.741 4.31 0.00 0.00 3.95
429 472 2.433662 AGTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
430 473 1.637553 AGTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
431 474 2.244252 AGTACTACTCCCTCCGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
432 475 3.461085 AGTACTACTCCCTCCGTTCCATA 59.539 47.826 0.00 0.00 0.00 2.74
433 476 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
434 477 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
435 478 5.070823 ACTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
436 479 5.652324 ACTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
437 480 6.797707 ACTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
438 481 6.890814 ACTACTCCCTCCGTTCCATAATATAG 59.109 42.308 0.00 0.00 0.00 1.31
439 482 5.652324 ACTCCCTCCGTTCCATAATATAGT 58.348 41.667 0.00 0.00 0.00 2.12
440 483 5.480772 ACTCCCTCCGTTCCATAATATAGTG 59.519 44.000 0.00 0.00 0.00 2.74
441 484 4.222145 TCCCTCCGTTCCATAATATAGTGC 59.778 45.833 0.00 0.00 0.00 4.40
442 485 4.504858 CCTCCGTTCCATAATATAGTGCC 58.495 47.826 0.00 0.00 0.00 5.01
443 486 4.223032 CCTCCGTTCCATAATATAGTGCCT 59.777 45.833 0.00 0.00 0.00 4.75
444 487 5.421056 CCTCCGTTCCATAATATAGTGCCTA 59.579 44.000 0.00 0.00 0.00 3.93
445 488 6.098409 CCTCCGTTCCATAATATAGTGCCTAT 59.902 42.308 1.18 1.18 0.00 2.57
446 489 7.287005 CCTCCGTTCCATAATATAGTGCCTATA 59.713 40.741 4.91 4.91 34.07 1.31
447 490 8.598202 TCCGTTCCATAATATAGTGCCTATAA 57.402 34.615 6.16 0.00 33.40 0.98
448 491 9.038072 TCCGTTCCATAATATAGTGCCTATAAA 57.962 33.333 6.16 0.60 33.40 1.40
449 492 9.095065 CCGTTCCATAATATAGTGCCTATAAAC 57.905 37.037 6.16 4.98 33.40 2.01
450 493 9.871238 CGTTCCATAATATAGTGCCTATAAACT 57.129 33.333 6.16 0.00 33.40 2.66
463 506 9.077885 AGTGCCTATAAACTTTTTGAGAAATCA 57.922 29.630 0.00 0.00 0.00 2.57
464 507 9.691362 GTGCCTATAAACTTTTTGAGAAATCAA 57.309 29.630 0.00 0.00 0.00 2.57
472 515 7.903995 ACTTTTTGAGAAATCAAACTTTGCA 57.096 28.000 3.03 0.00 39.06 4.08
473 516 8.321650 ACTTTTTGAGAAATCAAACTTTGCAA 57.678 26.923 0.00 0.00 39.06 4.08
474 517 8.782144 ACTTTTTGAGAAATCAAACTTTGCAAA 58.218 25.926 12.14 12.14 39.06 3.68
475 518 8.947304 TTTTTGAGAAATCAAACTTTGCAAAC 57.053 26.923 8.05 0.00 39.06 2.93
476 519 7.903995 TTTGAGAAATCAAACTTTGCAAACT 57.096 28.000 8.05 0.00 35.01 2.66
477 520 7.903995 TTGAGAAATCAAACTTTGCAAACTT 57.096 28.000 8.05 2.81 0.00 2.66
478 521 7.903995 TGAGAAATCAAACTTTGCAAACTTT 57.096 28.000 8.05 9.26 0.00 2.66
479 522 7.741198 TGAGAAATCAAACTTTGCAAACTTTG 58.259 30.769 25.88 25.88 0.00 2.77
480 523 7.601886 TGAGAAATCAAACTTTGCAAACTTTGA 59.398 29.630 31.31 31.31 36.16 2.69
481 524 7.742151 AGAAATCAAACTTTGCAAACTTTGAC 58.258 30.769 31.60 23.86 35.26 3.18
482 525 6.421377 AATCAAACTTTGCAAACTTTGACC 57.579 33.333 31.60 0.00 35.26 4.02
483 526 4.887748 TCAAACTTTGCAAACTTTGACCA 58.112 34.783 28.34 15.97 30.84 4.02
484 527 5.300752 TCAAACTTTGCAAACTTTGACCAA 58.699 33.333 28.34 15.72 30.84 3.67
485 528 5.407995 TCAAACTTTGCAAACTTTGACCAAG 59.592 36.000 28.34 12.42 38.64 3.61
495 538 4.513406 ACTTTGACCAAGTTTGTAGGGA 57.487 40.909 0.00 0.00 43.89 4.20
496 539 4.862371 ACTTTGACCAAGTTTGTAGGGAA 58.138 39.130 0.00 0.00 43.89 3.97
497 540 5.265989 ACTTTGACCAAGTTTGTAGGGAAA 58.734 37.500 0.00 0.00 43.89 3.13
498 541 5.717654 ACTTTGACCAAGTTTGTAGGGAAAA 59.282 36.000 0.00 0.00 43.89 2.29
499 542 6.211785 ACTTTGACCAAGTTTGTAGGGAAAAA 59.788 34.615 0.00 0.00 43.89 1.94
500 543 6.800072 TTGACCAAGTTTGTAGGGAAAAAT 57.200 33.333 0.00 0.00 0.00 1.82
501 544 7.899648 TTGACCAAGTTTGTAGGGAAAAATA 57.100 32.000 0.00 0.00 0.00 1.40
502 545 8.485578 TTGACCAAGTTTGTAGGGAAAAATAT 57.514 30.769 0.00 0.00 0.00 1.28
503 546 8.485578 TGACCAAGTTTGTAGGGAAAAATATT 57.514 30.769 0.00 0.00 0.00 1.28
504 547 8.929487 TGACCAAGTTTGTAGGGAAAAATATTT 58.071 29.630 0.00 0.00 0.00 1.40
577 751 9.476202 AAAAACTTCAACAATTAGGATAGTTGC 57.524 29.630 0.00 0.00 41.41 4.17
578 752 7.759489 AACTTCAACAATTAGGATAGTTGCA 57.241 32.000 0.00 0.00 41.41 4.08
579 753 7.383102 ACTTCAACAATTAGGATAGTTGCAG 57.617 36.000 0.00 0.00 41.41 4.41
580 754 7.168219 ACTTCAACAATTAGGATAGTTGCAGA 58.832 34.615 9.95 0.00 41.41 4.26
581 755 7.665559 ACTTCAACAATTAGGATAGTTGCAGAA 59.334 33.333 9.95 2.83 41.41 3.02
582 756 7.377766 TCAACAATTAGGATAGTTGCAGAAC 57.622 36.000 0.00 0.00 41.41 3.01
583 757 7.168219 TCAACAATTAGGATAGTTGCAGAACT 58.832 34.615 0.00 0.00 41.41 3.01
584 758 6.992063 ACAATTAGGATAGTTGCAGAACTG 57.008 37.500 1.14 0.00 41.41 3.16
585 759 6.711277 ACAATTAGGATAGTTGCAGAACTGA 58.289 36.000 5.97 0.00 41.41 3.41
586 760 6.820656 ACAATTAGGATAGTTGCAGAACTGAG 59.179 38.462 5.97 0.00 41.41 3.35
587 761 3.258971 AGGATAGTTGCAGAACTGAGC 57.741 47.619 5.97 0.00 42.66 4.26
602 776 6.753279 CAGAACTGAGCAATCAAGAAAACAAA 59.247 34.615 0.00 0.00 0.00 2.83
603 777 6.976925 AGAACTGAGCAATCAAGAAAACAAAG 59.023 34.615 0.00 0.00 0.00 2.77
608 782 5.359756 AGCAATCAAGAAAACAAAGGGTTC 58.640 37.500 0.00 0.00 39.29 3.62
618 792 4.385358 AACAAAGGGTTCATGTTGACAC 57.615 40.909 0.00 0.00 36.03 3.67
619 793 3.360867 ACAAAGGGTTCATGTTGACACA 58.639 40.909 0.00 0.00 37.31 3.72
621 795 5.136828 ACAAAGGGTTCATGTTGACACATA 58.863 37.500 0.00 0.00 42.14 2.29
622 796 5.241506 ACAAAGGGTTCATGTTGACACATAG 59.758 40.000 0.00 0.00 42.14 2.23
623 797 4.640771 AGGGTTCATGTTGACACATAGT 57.359 40.909 0.00 0.00 42.14 2.12
651 849 3.265489 TCTCCCCTCACCTAACCAAATT 58.735 45.455 0.00 0.00 0.00 1.82
662 860 0.894835 AACCAAATTCCATCACGGGC 59.105 50.000 0.00 0.00 34.36 6.13
672 871 0.801872 CATCACGGGCGTCATTTTCA 59.198 50.000 0.00 0.00 0.00 2.69
686 885 6.215845 CGTCATTTTCACCATCCTTTTTCTT 58.784 36.000 0.00 0.00 0.00 2.52
698 897 2.920490 CCTTTTTCTTCTCTCTCTCGCG 59.080 50.000 0.00 0.00 0.00 5.87
736 947 1.508632 TCGCACGGGAAGAAAAGAAG 58.491 50.000 0.00 0.00 0.00 2.85
789 1000 4.175337 CCATGGACGGACGGGCAT 62.175 66.667 5.56 0.00 0.00 4.40
809 1020 7.968405 CGGGCATCCTAGTTTATTTATAAATGC 59.032 37.037 18.98 11.51 35.02 3.56
951 1192 4.190772 AGAAGAATAGAAGAGCAAGCAGC 58.809 43.478 0.00 0.00 46.19 5.25
964 1205 0.246086 AAGCAGCGAGAACTCTGAGG 59.754 55.000 9.85 0.00 31.33 3.86
965 1206 1.809209 GCAGCGAGAACTCTGAGGC 60.809 63.158 9.85 2.22 31.33 4.70
994 1253 4.624913 AGAGAGAGAGAGAGAGAGGAAGA 58.375 47.826 0.00 0.00 0.00 2.87
1029 1288 4.552365 GCTCGCCATGGCTGCCTA 62.552 66.667 33.07 12.90 39.32 3.93
1077 1336 2.036098 CATGGCCAGGCTCACCAA 59.964 61.111 13.05 0.00 39.06 3.67
1141 1403 1.630878 TCTCTTCTTTCCCCCTCTTGC 59.369 52.381 0.00 0.00 0.00 4.01
1362 1645 3.339141 GTTTTACTGGCTTCTGAGGAGG 58.661 50.000 0.00 0.00 0.00 4.30
1451 1739 2.019984 CCATTAGAAGCAGGAGCAACC 58.980 52.381 0.00 0.00 45.49 3.77
1490 1782 3.627123 TGTTTTCAGGGATACATCATGCG 59.373 43.478 0.00 0.00 39.74 4.73
1640 1933 2.418976 CTGCAGTGTGAATCACATGAGG 59.581 50.000 19.72 10.16 46.32 3.86
1660 1971 2.243736 GGGAGAAAGAGAGAGAGGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
1680 1991 3.140144 AGAGAGGGATTTGTGTGGGAAAA 59.860 43.478 0.00 0.00 0.00 2.29
1740 2230 2.508526 ACAGCTTTTGTGACTCCCATC 58.491 47.619 0.00 0.00 38.99 3.51
1757 2248 3.840078 CCCATCCTTTCCTTTCAAACCAT 59.160 43.478 0.00 0.00 0.00 3.55
1769 2260 5.643348 CCTTTCAAACCATAAAAATGCCCTC 59.357 40.000 0.00 0.00 0.00 4.30
1775 2266 5.151297 ACCATAAAAATGCCCTCAAAGTG 57.849 39.130 0.00 0.00 0.00 3.16
1784 2275 3.700538 TGCCCTCAAAGTGCAGATAAAT 58.299 40.909 0.00 0.00 0.00 1.40
1789 2280 6.095377 CCCTCAAAGTGCAGATAAATTTCAC 58.905 40.000 0.00 0.00 0.00 3.18
1800 2291 8.087136 TGCAGATAAATTTCACAAATGCAGTTA 58.913 29.630 0.00 0.00 0.00 2.24
1857 2352 1.477700 CTCTCTTCTCAGAGGCACTGG 59.522 57.143 12.06 3.41 46.17 4.00
1858 2353 0.108233 CTCTTCTCAGAGGCACTGGC 60.108 60.000 12.06 0.00 45.76 4.85
1883 2381 7.499232 GCTCCACATCTTTTACCACTGTATAAT 59.501 37.037 0.00 0.00 0.00 1.28
2023 2526 3.994392 GACATGAGGAACGCTGTAAGAAA 59.006 43.478 0.00 0.00 34.07 2.52
2026 2529 5.049405 ACATGAGGAACGCTGTAAGAAAAAG 60.049 40.000 0.00 0.00 34.07 2.27
2028 2531 5.120399 TGAGGAACGCTGTAAGAAAAAGAA 58.880 37.500 0.00 0.00 34.07 2.52
2249 2767 5.308014 ACTTGCAGTAATGTCATGAACAGA 58.692 37.500 0.00 0.00 42.37 3.41
2257 2775 2.916640 TGTCATGAACAGACACTGCAA 58.083 42.857 0.00 0.00 40.80 4.08
2258 2776 3.479489 TGTCATGAACAGACACTGCAAT 58.521 40.909 0.00 0.00 40.80 3.56
2259 2777 3.499537 TGTCATGAACAGACACTGCAATC 59.500 43.478 0.00 0.00 40.80 2.67
2260 2778 3.499537 GTCATGAACAGACACTGCAATCA 59.500 43.478 0.00 0.00 34.37 2.57
2261 2779 4.023792 GTCATGAACAGACACTGCAATCAA 60.024 41.667 0.00 0.00 34.37 2.57
2323 2841 4.529769 TGATCACAACAGATGAGGAAGTCT 59.470 41.667 0.00 0.00 0.00 3.24
2377 2895 3.979347 ACAAGGAGGCATATGAAGAGGAT 59.021 43.478 6.97 0.00 0.00 3.24
2437 2955 2.693069 CCGGTAGCTGATGATCATTCC 58.307 52.381 10.14 0.00 0.00 3.01
2494 3015 2.842462 CCCCCGGTCATCGATCCA 60.842 66.667 0.00 0.00 42.43 3.41
2517 3038 3.710722 CAGCAAGGCCGAGGAGGT 61.711 66.667 0.00 0.00 43.70 3.85
2518 3039 2.930562 AGCAAGGCCGAGGAGGTT 60.931 61.111 0.00 0.00 43.70 3.50
2569 3090 7.401955 TCAGAGGTATGATCAGTGCATATAG 57.598 40.000 0.09 0.00 31.54 1.31
2570 3091 7.177878 TCAGAGGTATGATCAGTGCATATAGA 58.822 38.462 0.09 0.00 31.54 1.98
2572 3093 6.096705 AGAGGTATGATCAGTGCATATAGAGC 59.903 42.308 0.09 0.00 31.54 4.09
2574 3095 6.440010 AGGTATGATCAGTGCATATAGAGCTT 59.560 38.462 0.09 0.00 31.54 3.74
2575 3096 6.534436 GGTATGATCAGTGCATATAGAGCTTG 59.466 42.308 0.09 0.00 31.54 4.01
2577 3098 6.165700 TGATCAGTGCATATAGAGCTTGAA 57.834 37.500 0.00 0.00 32.87 2.69
2578 3099 6.585416 TGATCAGTGCATATAGAGCTTGAAA 58.415 36.000 0.00 3.17 32.87 2.69
2663 3203 3.285484 GCTGAATCAGGTTGTGATGGAT 58.715 45.455 12.66 0.00 45.89 3.41
2676 3216 0.510359 GATGGATGATGCGTCGAAGC 59.490 55.000 16.84 16.84 37.71 3.86
2738 3278 1.785430 CAGATGCTGATGACGACGATG 59.215 52.381 0.00 0.00 32.44 3.84
2753 3293 1.303309 CGATGGCTTGGGACTGATTC 58.697 55.000 0.00 0.00 0.00 2.52
2778 3324 2.565841 GGGCTGGTTATAGCACTTGAG 58.434 52.381 0.00 0.00 43.74 3.02
2792 3338 3.462021 CACTTGAGTAGCTAGGATTGCC 58.538 50.000 0.00 0.00 0.00 4.52
2805 3353 1.063717 GGATTGCCCAGGATCTTGGAA 60.064 52.381 24.74 12.47 40.87 3.53
2855 3403 0.523072 GGCACATGTACACCTGCAAG 59.477 55.000 22.03 4.92 0.00 4.01
2879 3431 5.450965 GCTTGGATACCTGAATTGACCAATG 60.451 44.000 0.00 0.00 35.79 2.82
2900 3453 6.934048 ATGTTGATCCTTTAAGCTAAGCTC 57.066 37.500 0.00 0.00 38.25 4.09
2938 3491 2.783510 TCTTCCCAGGAGAAACCAGTTT 59.216 45.455 0.00 0.00 42.04 2.66
2940 3493 1.144913 TCCCAGGAGAAACCAGTTTGG 59.855 52.381 0.00 0.00 45.02 3.28
2989 3549 4.627058 TGACACTTCACTCTTTCGCATTA 58.373 39.130 0.00 0.00 0.00 1.90
3052 3612 4.757149 AGAAGAAACATCCAGCAAGTACAC 59.243 41.667 0.00 0.00 0.00 2.90
3066 3626 4.970003 GCAAGTACACTGTACAAGCAAAAG 59.030 41.667 19.34 3.60 0.00 2.27
3076 3637 0.890683 CAAGCAAAAGGGCAGGTAGG 59.109 55.000 0.00 0.00 35.83 3.18
3079 3640 1.359130 AGCAAAAGGGCAGGTAGGATT 59.641 47.619 0.00 0.00 35.83 3.01
3084 3645 2.570386 AGGGCAGGTAGGATTACACT 57.430 50.000 0.00 0.00 0.00 3.55
3091 3652 7.294958 AGGGCAGGTAGGATTACACTATATTTT 59.705 37.037 0.00 0.00 0.00 1.82
3146 3707 1.740380 GCGGCAGAAGAGCTACATCAA 60.740 52.381 0.00 0.00 34.17 2.57
3150 3711 3.254060 GCAGAAGAGCTACATCAACGAA 58.746 45.455 0.00 0.00 0.00 3.85
3153 3714 3.868077 AGAAGAGCTACATCAACGAATGC 59.132 43.478 0.00 0.00 0.00 3.56
3158 3719 2.613595 GCTACATCAACGAATGCATCCA 59.386 45.455 0.00 0.00 0.00 3.41
3160 3721 3.703286 ACATCAACGAATGCATCCATG 57.297 42.857 0.00 0.00 0.00 3.66
3173 3734 3.997681 TGCATCCATGACAATTTTGCAAG 59.002 39.130 0.00 0.00 35.85 4.01
3179 3740 6.990798 TCCATGACAATTTTGCAAGACATAA 58.009 32.000 0.00 0.00 0.00 1.90
3180 3741 7.440198 TCCATGACAATTTTGCAAGACATAAA 58.560 30.769 0.00 0.00 0.00 1.40
3181 3742 7.930325 TCCATGACAATTTTGCAAGACATAAAA 59.070 29.630 0.00 0.00 0.00 1.52
3185 3746 9.809096 TGACAATTTTGCAAGACATAAAACTAA 57.191 25.926 0.00 0.00 0.00 2.24
3195 3756 8.589629 GCAAGACATAAAACTAAGCATTCATTG 58.410 33.333 0.00 0.00 0.00 2.82
3225 3786 6.606234 TGCAATAAAACAGAACTACGACAA 57.394 33.333 0.00 0.00 0.00 3.18
3226 3787 6.423862 TGCAATAAAACAGAACTACGACAAC 58.576 36.000 0.00 0.00 0.00 3.32
3233 3794 4.806330 ACAGAACTACGACAACCATACAG 58.194 43.478 0.00 0.00 0.00 2.74
3235 3796 2.667473 ACTACGACAACCATACAGCC 57.333 50.000 0.00 0.00 0.00 4.85
3246 3808 2.505819 ACCATACAGCCTTCAGGGTTAG 59.494 50.000 0.00 0.00 44.81 2.34
3248 3810 0.535335 TACAGCCTTCAGGGTTAGCG 59.465 55.000 0.00 0.00 44.81 4.26
3269 3831 5.361857 AGCGAATGAATTCCTTGATTCCAAT 59.638 36.000 2.27 0.00 33.06 3.16
3270 3832 5.689068 GCGAATGAATTCCTTGATTCCAATC 59.311 40.000 2.27 0.00 33.06 2.67
3275 3837 6.247676 TGAATTCCTTGATTCCAATCAGACA 58.752 36.000 2.27 0.00 45.35 3.41
3276 3838 6.151648 TGAATTCCTTGATTCCAATCAGACAC 59.848 38.462 2.27 0.00 45.35 3.67
3277 3839 3.955471 TCCTTGATTCCAATCAGACACC 58.045 45.455 2.35 0.00 45.35 4.16
3283 3845 2.479566 TCCAATCAGACACCAGAAGC 57.520 50.000 0.00 0.00 0.00 3.86
3287 3849 0.035630 ATCAGACACCAGAAGCCAGC 60.036 55.000 0.00 0.00 0.00 4.85
3289 3851 0.250640 CAGACACCAGAAGCCAGCTT 60.251 55.000 4.17 4.17 39.23 3.74
3290 3852 0.250640 AGACACCAGAAGCCAGCTTG 60.251 55.000 10.13 0.00 36.26 4.01
3301 3863 0.599558 GCCAGCTTGTGCAGATTCAA 59.400 50.000 0.00 0.00 42.74 2.69
3325 3887 3.647636 AGACCATACCACTGTATCAGCT 58.352 45.455 0.00 0.00 35.46 4.24
3326 3888 3.639094 AGACCATACCACTGTATCAGCTC 59.361 47.826 0.00 0.00 35.46 4.09
3336 3898 1.561076 TGTATCAGCTCCTTGCACCAT 59.439 47.619 0.00 0.00 45.94 3.55
3352 3914 0.256752 CCATGACCATGAGGGCTCAA 59.743 55.000 11.28 0.00 46.30 3.02
3367 3937 1.741706 GCTCAATCCACCACATGTCTG 59.258 52.381 0.00 0.00 0.00 3.51
3375 3945 3.587061 TCCACCACATGTCTGGAAATAGT 59.413 43.478 16.43 0.00 35.04 2.12
3376 3946 3.691118 CCACCACATGTCTGGAAATAGTG 59.309 47.826 12.22 0.00 35.04 2.74
3382 3952 4.018960 ACATGTCTGGAAATAGTGGCTCTT 60.019 41.667 0.00 0.00 0.00 2.85
3383 3953 4.640771 TGTCTGGAAATAGTGGCTCTTT 57.359 40.909 0.00 0.00 0.00 2.52
3395 3965 3.624861 AGTGGCTCTTTATCGCAATCTTG 59.375 43.478 0.00 0.00 0.00 3.02
3418 3988 2.134789 AGGGCATGACCAATTCTCAC 57.865 50.000 22.78 0.00 42.05 3.51
3420 3990 2.170166 GGGCATGACCAATTCTCACAA 58.830 47.619 14.59 0.00 42.05 3.33
3489 4059 2.380084 TTGACCGAATAGTCACCTGC 57.620 50.000 0.00 0.00 46.18 4.85
3490 4060 0.535335 TGACCGAATAGTCACCTGCC 59.465 55.000 0.00 0.00 41.78 4.85
3491 4061 0.527817 GACCGAATAGTCACCTGCCG 60.528 60.000 0.00 0.00 36.73 5.69
3492 4062 0.968901 ACCGAATAGTCACCTGCCGA 60.969 55.000 0.00 0.00 0.00 5.54
3493 4063 0.249073 CCGAATAGTCACCTGCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
3494 4064 0.872021 CGAATAGTCACCTGCCGAGC 60.872 60.000 0.00 0.00 0.00 5.03
3495 4065 0.175760 GAATAGTCACCTGCCGAGCA 59.824 55.000 0.00 0.00 36.92 4.26
3529 4099 8.676401 GGCATAAAAATCAATGGCATAAAAAGT 58.324 29.630 0.00 0.00 45.31 2.66
3536 4106 8.789825 AATCAATGGCATAAAAAGTATTTGCA 57.210 26.923 0.00 0.00 39.02 4.08
3537 4107 8.789825 ATCAATGGCATAAAAAGTATTTGCAA 57.210 26.923 0.00 0.00 39.02 4.08
3540 4110 9.843334 CAATGGCATAAAAAGTATTTGCAATTT 57.157 25.926 0.00 0.00 39.02 1.82
3542 4112 8.845413 TGGCATAAAAAGTATTTGCAATTTCT 57.155 26.923 0.00 0.00 39.02 2.52
3563 4140 5.240891 TCTGAGTCTTATGTGCCTTGAAAG 58.759 41.667 0.00 0.00 0.00 2.62
3722 4417 6.416750 TGCGTACACATTAGATTTAGTCATCG 59.583 38.462 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.733684 CGTTTGTTTGTTTGAGACCTGGG 60.734 47.826 0.00 0.00 0.00 4.45
1 2 3.434637 CGTTTGTTTGTTTGAGACCTGG 58.565 45.455 0.00 0.00 0.00 4.45
2 3 2.851824 GCGTTTGTTTGTTTGAGACCTG 59.148 45.455 0.00 0.00 0.00 4.00
3 4 2.490115 TGCGTTTGTTTGTTTGAGACCT 59.510 40.909 0.00 0.00 0.00 3.85
4 5 2.596862 GTGCGTTTGTTTGTTTGAGACC 59.403 45.455 0.00 0.00 0.00 3.85
5 6 3.300590 CAGTGCGTTTGTTTGTTTGAGAC 59.699 43.478 0.00 0.00 0.00 3.36
6 7 3.497118 CAGTGCGTTTGTTTGTTTGAGA 58.503 40.909 0.00 0.00 0.00 3.27
7 8 2.027926 GCAGTGCGTTTGTTTGTTTGAG 59.972 45.455 0.00 0.00 0.00 3.02
8 9 1.989165 GCAGTGCGTTTGTTTGTTTGA 59.011 42.857 0.00 0.00 0.00 2.69
9 10 1.723542 TGCAGTGCGTTTGTTTGTTTG 59.276 42.857 11.20 0.00 0.00 2.93
10 11 2.071688 TGCAGTGCGTTTGTTTGTTT 57.928 40.000 11.20 0.00 0.00 2.83
11 12 1.925847 CATGCAGTGCGTTTGTTTGTT 59.074 42.857 7.22 0.00 0.00 2.83
12 13 1.135141 ACATGCAGTGCGTTTGTTTGT 60.135 42.857 7.22 0.00 0.00 2.83
13 14 1.558741 ACATGCAGTGCGTTTGTTTG 58.441 45.000 7.22 0.00 0.00 2.93
14 15 2.098280 TGTACATGCAGTGCGTTTGTTT 59.902 40.909 19.21 3.19 35.35 2.83
15 16 1.673400 TGTACATGCAGTGCGTTTGTT 59.327 42.857 19.21 3.76 35.35 2.83
16 17 1.002900 GTGTACATGCAGTGCGTTTGT 60.003 47.619 18.37 18.37 35.35 2.83
17 18 1.003008 TGTGTACATGCAGTGCGTTTG 60.003 47.619 7.22 8.96 35.35 2.93
18 19 1.304254 TGTGTACATGCAGTGCGTTT 58.696 45.000 7.22 3.81 35.35 3.60
19 20 1.522668 ATGTGTACATGCAGTGCGTT 58.477 45.000 7.22 2.30 35.35 4.84
20 21 1.522668 AATGTGTACATGCAGTGCGT 58.477 45.000 11.20 7.46 36.56 5.24
21 22 2.617250 AAATGTGTACATGCAGTGCG 57.383 45.000 11.20 0.00 36.56 5.34
22 23 3.641648 ACAAAATGTGTACATGCAGTGC 58.358 40.909 8.58 8.58 39.29 4.40
23 24 6.292274 GGAAAACAAAATGTGTACATGCAGTG 60.292 38.462 0.00 0.00 40.60 3.66
28 29 7.011295 AGCAAAGGAAAACAAAATGTGTACATG 59.989 33.333 0.00 0.00 40.60 3.21
40 41 1.830477 AGTGCCAGCAAAGGAAAACAA 59.170 42.857 0.00 0.00 0.00 2.83
42 43 2.602257 AAGTGCCAGCAAAGGAAAAC 57.398 45.000 0.00 0.00 0.00 2.43
43 44 2.158971 GGAAAGTGCCAGCAAAGGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
44 45 1.412343 GGAAAGTGCCAGCAAAGGAAA 59.588 47.619 0.00 0.00 0.00 3.13
47 48 0.752054 TTGGAAAGTGCCAGCAAAGG 59.248 50.000 0.00 0.00 39.52 3.11
121 124 3.129462 GGCCTTATGTTGCTTCTCTTTCC 59.871 47.826 0.00 0.00 0.00 3.13
135 142 0.179020 TCTTCATGGCCGGCCTTATG 60.179 55.000 43.34 36.49 36.94 1.90
140 147 1.322538 AATTGTCTTCATGGCCGGCC 61.323 55.000 39.40 39.40 0.00 6.13
141 148 1.388547 TAATTGTCTTCATGGCCGGC 58.611 50.000 21.18 21.18 0.00 6.13
142 149 4.654091 AATTAATTGTCTTCATGGCCGG 57.346 40.909 0.00 0.00 0.00 6.13
143 150 7.026631 TCTTAATTAATTGTCTTCATGGCCG 57.973 36.000 11.05 0.00 0.00 6.13
165 172 3.100671 GTGGGTGTCCTGATCTAACTCT 58.899 50.000 0.00 0.00 0.00 3.24
166 173 2.832129 TGTGGGTGTCCTGATCTAACTC 59.168 50.000 0.00 0.00 0.00 3.01
182 189 1.333636 TGGCCAGGTTTGTTTGTGGG 61.334 55.000 0.00 0.00 0.00 4.61
183 190 0.758123 ATGGCCAGGTTTGTTTGTGG 59.242 50.000 13.05 0.00 0.00 4.17
184 191 2.211806 CAATGGCCAGGTTTGTTTGTG 58.788 47.619 13.05 0.00 0.00 3.33
193 200 0.760189 AACTTGCACAATGGCCAGGT 60.760 50.000 13.05 9.60 31.24 4.00
216 248 4.100035 TGTGGCATGTGGTTAAACAAATGA 59.900 37.500 25.07 4.53 38.15 2.57
249 281 9.547753 GGCACAGAAAGATTATAGAGAACATTA 57.452 33.333 0.00 0.00 0.00 1.90
250 282 8.049117 TGGCACAGAAAGATTATAGAGAACATT 58.951 33.333 0.00 0.00 0.00 2.71
251 283 7.568349 TGGCACAGAAAGATTATAGAGAACAT 58.432 34.615 0.00 0.00 0.00 2.71
252 284 6.946340 TGGCACAGAAAGATTATAGAGAACA 58.054 36.000 0.00 0.00 0.00 3.18
341 379 2.083774 TGACTTTGGATTAAGCAGGCG 58.916 47.619 0.00 0.00 0.00 5.52
370 413 2.427453 GGTCTCGTCCATCTTGCTCTTA 59.573 50.000 0.00 0.00 0.00 2.10
373 416 0.532573 TGGTCTCGTCCATCTTGCTC 59.467 55.000 0.00 0.00 31.96 4.26
374 417 0.976641 TTGGTCTCGTCCATCTTGCT 59.023 50.000 0.00 0.00 37.33 3.91
375 418 2.029838 ATTGGTCTCGTCCATCTTGC 57.970 50.000 0.00 0.00 37.33 4.01
376 419 3.458189 GGTATTGGTCTCGTCCATCTTG 58.542 50.000 0.00 0.00 37.33 3.02
377 420 2.100916 CGGTATTGGTCTCGTCCATCTT 59.899 50.000 0.00 0.00 37.33 2.40
378 421 1.681793 CGGTATTGGTCTCGTCCATCT 59.318 52.381 0.00 0.00 37.33 2.90
379 422 1.868519 GCGGTATTGGTCTCGTCCATC 60.869 57.143 0.00 0.00 37.33 3.51
380 423 0.104304 GCGGTATTGGTCTCGTCCAT 59.896 55.000 0.00 0.00 37.33 3.41
381 424 0.968901 AGCGGTATTGGTCTCGTCCA 60.969 55.000 0.00 0.00 35.49 4.02
382 425 0.175073 AAGCGGTATTGGTCTCGTCC 59.825 55.000 0.00 0.00 0.00 4.79
383 426 1.659098 CAAAGCGGTATTGGTCTCGTC 59.341 52.381 0.00 0.00 0.00 4.20
384 427 1.001633 ACAAAGCGGTATTGGTCTCGT 59.998 47.619 12.04 0.00 32.02 4.18
385 428 1.722011 ACAAAGCGGTATTGGTCTCG 58.278 50.000 12.04 0.00 32.02 4.04
386 429 4.499037 AAAACAAAGCGGTATTGGTCTC 57.501 40.909 12.04 0.00 32.02 3.36
387 430 6.882678 ACTATAAAACAAAGCGGTATTGGTCT 59.117 34.615 12.04 0.00 32.02 3.85
388 431 7.080353 ACTATAAAACAAAGCGGTATTGGTC 57.920 36.000 12.04 0.00 32.02 4.02
389 432 7.825761 AGTACTATAAAACAAAGCGGTATTGGT 59.174 33.333 0.00 4.88 32.02 3.67
390 433 8.205131 AGTACTATAAAACAAAGCGGTATTGG 57.795 34.615 0.00 0.00 32.02 3.16
393 436 9.741647 GAGTAGTACTATAAAACAAAGCGGTAT 57.258 33.333 5.75 0.00 0.00 2.73
394 437 8.190784 GGAGTAGTACTATAAAACAAAGCGGTA 58.809 37.037 5.75 0.00 0.00 4.02
395 438 7.038048 GGAGTAGTACTATAAAACAAAGCGGT 58.962 38.462 5.75 0.00 0.00 5.68
396 439 6.478016 GGGAGTAGTACTATAAAACAAAGCGG 59.522 42.308 5.75 0.00 0.00 5.52
397 440 7.263496 AGGGAGTAGTACTATAAAACAAAGCG 58.737 38.462 5.75 0.00 0.00 4.68
398 441 7.710044 GGAGGGAGTAGTACTATAAAACAAAGC 59.290 40.741 5.75 0.00 0.00 3.51
399 442 7.919621 CGGAGGGAGTAGTACTATAAAACAAAG 59.080 40.741 5.75 0.00 0.00 2.77
400 443 7.397192 ACGGAGGGAGTAGTACTATAAAACAAA 59.603 37.037 5.75 0.00 0.00 2.83
401 444 6.891908 ACGGAGGGAGTAGTACTATAAAACAA 59.108 38.462 5.75 0.00 0.00 2.83
402 445 6.426587 ACGGAGGGAGTAGTACTATAAAACA 58.573 40.000 5.75 0.00 0.00 2.83
403 446 6.951062 ACGGAGGGAGTAGTACTATAAAAC 57.049 41.667 5.75 0.00 0.00 2.43
404 447 6.547510 GGAACGGAGGGAGTAGTACTATAAAA 59.452 42.308 5.75 0.00 0.00 1.52
405 448 6.064717 GGAACGGAGGGAGTAGTACTATAAA 58.935 44.000 5.75 0.00 0.00 1.40
406 449 5.132648 TGGAACGGAGGGAGTAGTACTATAA 59.867 44.000 5.75 0.00 0.00 0.98
407 450 4.660303 TGGAACGGAGGGAGTAGTACTATA 59.340 45.833 5.75 0.00 0.00 1.31
408 451 3.461085 TGGAACGGAGGGAGTAGTACTAT 59.539 47.826 5.75 0.00 0.00 2.12
409 452 2.846206 TGGAACGGAGGGAGTAGTACTA 59.154 50.000 1.88 0.00 0.00 1.82
410 453 1.637553 TGGAACGGAGGGAGTAGTACT 59.362 52.381 1.37 1.37 0.00 2.73
411 454 2.134789 TGGAACGGAGGGAGTAGTAC 57.865 55.000 0.00 0.00 0.00 2.73
412 455 4.524802 TTATGGAACGGAGGGAGTAGTA 57.475 45.455 0.00 0.00 0.00 1.82
413 456 3.393426 TTATGGAACGGAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
414 457 6.890814 ACTATATTATGGAACGGAGGGAGTAG 59.109 42.308 0.00 0.00 0.00 2.57
415 458 6.662234 CACTATATTATGGAACGGAGGGAGTA 59.338 42.308 0.00 0.00 0.00 2.59
416 459 5.480772 CACTATATTATGGAACGGAGGGAGT 59.519 44.000 0.00 0.00 0.00 3.85
417 460 5.624738 GCACTATATTATGGAACGGAGGGAG 60.625 48.000 0.00 0.00 0.00 4.30
418 461 4.222145 GCACTATATTATGGAACGGAGGGA 59.778 45.833 0.00 0.00 0.00 4.20
419 462 4.504858 GCACTATATTATGGAACGGAGGG 58.495 47.826 0.00 0.00 0.00 4.30
420 463 4.223032 AGGCACTATATTATGGAACGGAGG 59.777 45.833 0.00 0.00 36.02 4.30
421 464 5.407407 AGGCACTATATTATGGAACGGAG 57.593 43.478 0.00 0.00 36.02 4.63
437 480 9.077885 TGATTTCTCAAAAAGTTTATAGGCACT 57.922 29.630 0.00 0.00 46.37 4.40
438 481 9.691362 TTGATTTCTCAAAAAGTTTATAGGCAC 57.309 29.630 0.00 0.00 38.43 5.01
452 495 7.903995 AGTTTGCAAAGTTTGATTTCTCAAA 57.096 28.000 19.82 14.41 46.53 2.69
453 496 7.903995 AAGTTTGCAAAGTTTGATTTCTCAA 57.096 28.000 23.54 9.48 39.62 3.02
454 497 7.903995 AAAGTTTGCAAAGTTTGATTTCTCA 57.096 28.000 33.55 3.64 39.40 3.27
463 506 5.861222 CTTGGTCAAAGTTTGCAAAGTTT 57.139 34.783 30.47 30.47 41.01 2.66
475 518 5.845391 TTTCCCTACAAACTTGGTCAAAG 57.155 39.130 0.00 0.00 42.07 2.77
476 519 6.607004 TTTTTCCCTACAAACTTGGTCAAA 57.393 33.333 0.00 0.00 0.00 2.69
477 520 6.800072 ATTTTTCCCTACAAACTTGGTCAA 57.200 33.333 0.00 0.00 0.00 3.18
478 521 8.485578 AATATTTTTCCCTACAAACTTGGTCA 57.514 30.769 0.00 0.00 0.00 4.02
551 594 9.476202 GCAACTATCCTAATTGTTGAAGTTTTT 57.524 29.630 14.10 0.00 45.60 1.94
559 733 7.119699 TCAGTTCTGCAACTATCCTAATTGTTG 59.880 37.037 7.91 7.91 45.55 3.33
563 737 5.819901 GCTCAGTTCTGCAACTATCCTAATT 59.180 40.000 0.00 0.00 41.24 1.40
575 749 3.130280 TCTTGATTGCTCAGTTCTGCA 57.870 42.857 0.00 0.00 37.42 4.41
576 750 4.494350 TTTCTTGATTGCTCAGTTCTGC 57.506 40.909 0.00 0.00 31.68 4.26
577 751 5.824429 TGTTTTCTTGATTGCTCAGTTCTG 58.176 37.500 0.00 0.00 31.68 3.02
578 752 6.455360 TTGTTTTCTTGATTGCTCAGTTCT 57.545 33.333 0.00 0.00 31.68 3.01
579 753 6.199719 CCTTTGTTTTCTTGATTGCTCAGTTC 59.800 38.462 0.00 0.00 31.68 3.01
580 754 6.044682 CCTTTGTTTTCTTGATTGCTCAGTT 58.955 36.000 0.00 0.00 31.68 3.16
581 755 5.452356 CCCTTTGTTTTCTTGATTGCTCAGT 60.452 40.000 0.00 0.00 31.68 3.41
582 756 4.986659 CCCTTTGTTTTCTTGATTGCTCAG 59.013 41.667 0.00 0.00 31.68 3.35
583 757 4.405358 ACCCTTTGTTTTCTTGATTGCTCA 59.595 37.500 0.00 0.00 0.00 4.26
584 758 4.948847 ACCCTTTGTTTTCTTGATTGCTC 58.051 39.130 0.00 0.00 0.00 4.26
585 759 5.104982 TGAACCCTTTGTTTTCTTGATTGCT 60.105 36.000 0.00 0.00 37.29 3.91
586 760 5.115480 TGAACCCTTTGTTTTCTTGATTGC 58.885 37.500 0.00 0.00 37.29 3.56
587 761 6.762661 ACATGAACCCTTTGTTTTCTTGATTG 59.237 34.615 0.00 0.00 37.29 2.67
602 776 4.640771 ACTATGTGTCAACATGAACCCT 57.359 40.909 0.00 0.00 46.66 4.34
603 777 6.205853 TGTTAACTATGTGTCAACATGAACCC 59.794 38.462 7.22 0.00 46.66 4.11
608 782 8.177663 GGAGAATGTTAACTATGTGTCAACATG 58.822 37.037 7.22 0.00 46.66 3.21
618 792 5.131142 AGGTGAGGGGAGAATGTTAACTATG 59.869 44.000 7.22 0.00 0.00 2.23
619 793 5.289510 AGGTGAGGGGAGAATGTTAACTAT 58.710 41.667 7.22 0.00 0.00 2.12
621 795 3.532102 AGGTGAGGGGAGAATGTTAACT 58.468 45.455 7.22 0.00 0.00 2.24
622 796 5.183969 GTTAGGTGAGGGGAGAATGTTAAC 58.816 45.833 0.00 0.00 0.00 2.01
623 797 4.226620 GGTTAGGTGAGGGGAGAATGTTAA 59.773 45.833 0.00 0.00 0.00 2.01
651 849 0.322098 AAAATGACGCCCGTGATGGA 60.322 50.000 0.00 0.00 42.00 3.41
662 860 5.772521 AGAAAAAGGATGGTGAAAATGACG 58.227 37.500 0.00 0.00 0.00 4.35
672 871 5.337169 CGAGAGAGAGAAGAAAAAGGATGGT 60.337 44.000 0.00 0.00 0.00 3.55
686 885 0.598562 AAAGCAACGCGAGAGAGAGA 59.401 50.000 15.93 0.00 33.96 3.10
698 897 3.120121 GCGATGACATGTTCAAAAGCAAC 59.880 43.478 0.00 0.00 37.92 4.17
736 947 2.689983 CCTTTGTGGCCACAGGAATATC 59.310 50.000 35.60 8.01 40.40 1.63
789 1000 9.386010 ACACACGCATTTATAAATAAACTAGGA 57.614 29.630 10.34 0.00 35.31 2.94
964 1205 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
965 1206 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
994 1253 1.919600 GCCTGCACCTCCATCTCCTT 61.920 60.000 0.00 0.00 0.00 3.36
1025 1284 2.272471 GCCTCCCTGTTGGTAGGC 59.728 66.667 2.99 2.99 44.66 3.93
1029 1288 3.177884 TGCTGCCTCCCTGTTGGT 61.178 61.111 0.00 0.00 34.77 3.67
1068 1327 1.603739 GGGAGGTTGTTGGTGAGCC 60.604 63.158 0.00 0.00 0.00 4.70
1069 1328 1.966451 CGGGAGGTTGTTGGTGAGC 60.966 63.158 0.00 0.00 0.00 4.26
1141 1403 0.172352 GAGAGCAGAGAACTGTCGGG 59.828 60.000 0.00 0.00 45.04 5.14
1218 1483 1.672898 GCAATGGCTGCCCAAGAAA 59.327 52.632 17.53 0.00 46.14 2.52
1314 1597 3.090532 CGGGGGAAAGGGGAGGAG 61.091 72.222 0.00 0.00 0.00 3.69
1362 1645 0.678048 AGAGATCAAAACGCAGGCCC 60.678 55.000 0.00 0.00 0.00 5.80
1451 1739 6.155827 TGAAAACAGGAAAAATATTGCCTCG 58.844 36.000 2.66 2.77 41.10 4.63
1481 1772 5.413969 CATCACAAGATAACGCATGATGT 57.586 39.130 0.00 0.00 38.94 3.06
1490 1782 4.877823 TGCTGGATCACATCACAAGATAAC 59.122 41.667 0.00 0.00 31.88 1.89
1615 1908 1.160137 GTGATTCACACTGCAGACCC 58.840 55.000 23.35 2.60 45.13 4.46
1640 1933 3.202151 TCTCTCCCTCTCTCTCTTTCTCC 59.798 52.174 0.00 0.00 0.00 3.71
1660 1971 3.611025 TTTTCCCACACAAATCCCTCT 57.389 42.857 0.00 0.00 0.00 3.69
1680 1991 6.073314 AGACAATATGCAGATAAGCCCAAAT 58.927 36.000 0.00 0.00 0.00 2.32
1740 2230 7.308529 GGCATTTTTATGGTTTGAAAGGAAAGG 60.309 37.037 0.00 0.00 0.00 3.11
1769 2260 7.742963 GCATTTGTGAAATTTATCTGCACTTTG 59.257 33.333 8.04 5.07 0.00 2.77
1775 2266 6.956299 ACTGCATTTGTGAAATTTATCTGC 57.044 33.333 0.00 0.00 0.00 4.26
1806 2297 6.093219 CAGTAAGTTCACAGCTGCATCTTATT 59.907 38.462 15.27 11.20 0.00 1.40
1807 2298 5.583854 CAGTAAGTTCACAGCTGCATCTTAT 59.416 40.000 15.27 0.00 0.00 1.73
1808 2299 4.931601 CAGTAAGTTCACAGCTGCATCTTA 59.068 41.667 15.27 14.05 0.00 2.10
1811 2302 3.329386 TCAGTAAGTTCACAGCTGCATC 58.671 45.455 15.27 2.02 0.00 3.91
1857 2352 3.412386 ACAGTGGTAAAAGATGTGGAGC 58.588 45.455 0.00 0.00 0.00 4.70
1858 2353 8.964476 ATTATACAGTGGTAAAAGATGTGGAG 57.036 34.615 0.00 0.00 32.19 3.86
1883 2381 8.037758 TCTTCTCCTGCAAATTTGTTTGTTTTA 58.962 29.630 19.03 0.00 34.56 1.52
2000 2503 2.560981 TCTTACAGCGTTCCTCATGTCA 59.439 45.455 0.00 0.00 0.00 3.58
2033 2536 2.512896 AGAGAGGGGAATGCACAATGAT 59.487 45.455 0.00 0.00 0.00 2.45
2034 2537 1.918262 AGAGAGGGGAATGCACAATGA 59.082 47.619 0.00 0.00 0.00 2.57
2046 2549 1.209019 CACTGAATCACCAGAGAGGGG 59.791 57.143 0.00 0.00 44.73 4.79
2168 2683 2.045045 TGCTCCCTGAAATGCCCG 60.045 61.111 0.00 0.00 0.00 6.13
2225 2741 6.368791 GTCTGTTCATGACATTACTGCAAGTA 59.631 38.462 0.00 0.00 41.54 2.24
2229 2745 4.452114 GTGTCTGTTCATGACATTACTGCA 59.548 41.667 0.00 0.00 44.74 4.41
2305 2823 5.546526 GAAGAAGACTTCCTCATCTGTTGT 58.453 41.667 11.67 0.00 44.60 3.32
2323 2841 0.987294 CTCCTGCCCTGGAAGAAGAA 59.013 55.000 0.00 0.00 35.43 2.52
2377 2895 4.601084 AGGATTCTTCGAAGTAGGAGTCA 58.399 43.478 23.85 0.00 0.00 3.41
2389 2907 4.934001 CCCATGATGTATGAGGATTCTTCG 59.066 45.833 0.00 0.00 39.21 3.79
2422 2940 2.106166 GTCAGGGGAATGATCATCAGCT 59.894 50.000 9.06 0.00 0.00 4.24
2423 2941 2.502295 GTCAGGGGAATGATCATCAGC 58.498 52.381 9.06 1.74 0.00 4.26
2437 2955 2.063378 GGAGAGCAGAGGGTCAGGG 61.063 68.421 0.00 0.00 43.97 4.45
2486 3007 1.340399 TTGCTGGGCTCTGGATCGAT 61.340 55.000 0.00 0.00 0.00 3.59
2517 3038 1.005097 AGGAAGGTGCAGCATGATCAA 59.995 47.619 19.63 0.00 39.69 2.57
2518 3039 0.622136 AGGAAGGTGCAGCATGATCA 59.378 50.000 19.63 0.00 39.69 2.92
2558 3079 5.121811 ACCTTTCAAGCTCTATATGCACTG 58.878 41.667 0.00 0.00 0.00 3.66
2565 3086 6.613271 AGATTCAGGACCTTTCAAGCTCTATA 59.387 38.462 0.00 0.00 0.00 1.31
2569 3090 3.688673 CAGATTCAGGACCTTTCAAGCTC 59.311 47.826 0.00 0.00 0.00 4.09
2570 3091 3.328931 TCAGATTCAGGACCTTTCAAGCT 59.671 43.478 0.00 0.00 0.00 3.74
2572 3093 5.065914 TGTTCAGATTCAGGACCTTTCAAG 58.934 41.667 0.00 0.00 0.00 3.02
2574 3095 4.705110 TGTTCAGATTCAGGACCTTTCA 57.295 40.909 0.00 0.00 0.00 2.69
2575 3096 5.105997 CCATTGTTCAGATTCAGGACCTTTC 60.106 44.000 0.00 0.00 0.00 2.62
2577 3098 4.202609 ACCATTGTTCAGATTCAGGACCTT 60.203 41.667 0.00 0.00 0.00 3.50
2578 3099 3.331889 ACCATTGTTCAGATTCAGGACCT 59.668 43.478 0.00 0.00 0.00 3.85
2663 3203 1.446099 GTCCTGCTTCGACGCATCA 60.446 57.895 17.59 3.95 39.52 3.07
2676 3216 3.522731 CCGCTCCTCGAGGTCCTG 61.523 72.222 30.17 18.84 41.67 3.86
2702 3242 2.890808 TCTGCTTCACAAACTCGACT 57.109 45.000 0.00 0.00 0.00 4.18
2738 3278 0.620556 TGGAGAATCAGTCCCAAGCC 59.379 55.000 0.00 0.00 36.25 4.35
2778 3324 1.424638 TCCTGGGCAATCCTAGCTAC 58.575 55.000 0.00 0.00 39.43 3.58
2792 3338 1.457346 GCACACTTCCAAGATCCTGG 58.543 55.000 3.72 3.72 37.87 4.45
2855 3403 3.620488 TGGTCAATTCAGGTATCCAAGC 58.380 45.455 0.00 0.00 0.00 4.01
2879 3431 5.295540 CCAGAGCTTAGCTTAAAGGATCAAC 59.704 44.000 8.58 0.00 39.88 3.18
2900 3453 4.508662 GGAAGAGACATGAAGGTAACCAG 58.491 47.826 0.00 0.00 37.17 4.00
2954 3507 9.778741 AGAGTGAAGTGTCAATTATGTAAAAGA 57.221 29.630 0.00 0.00 34.87 2.52
2970 3523 6.430451 ACTTTTAATGCGAAAGAGTGAAGTG 58.570 36.000 3.83 0.00 37.50 3.16
2971 3524 6.619801 ACTTTTAATGCGAAAGAGTGAAGT 57.380 33.333 3.83 0.00 37.50 3.01
2972 3525 7.530861 GTGTACTTTTAATGCGAAAGAGTGAAG 59.469 37.037 3.83 0.00 37.50 3.02
2973 3526 7.011576 TGTGTACTTTTAATGCGAAAGAGTGAA 59.988 33.333 3.83 0.00 37.50 3.18
3052 3612 1.270550 CCTGCCCTTTTGCTTGTACAG 59.729 52.381 0.00 0.00 0.00 2.74
3066 3626 6.622427 AATATAGTGTAATCCTACCTGCCC 57.378 41.667 0.00 0.00 0.00 5.36
3104 3665 6.081049 CGCAAATTTTGATGTTGAATGCATT 58.919 32.000 12.83 12.83 0.00 3.56
3105 3666 5.391097 CCGCAAATTTTGATGTTGAATGCAT 60.391 36.000 13.26 0.00 0.00 3.96
3106 3667 4.083961 CCGCAAATTTTGATGTTGAATGCA 60.084 37.500 13.26 0.00 0.00 3.96
3107 3668 4.396519 CCGCAAATTTTGATGTTGAATGC 58.603 39.130 13.26 0.00 0.00 3.56
3108 3669 4.083961 TGCCGCAAATTTTGATGTTGAATG 60.084 37.500 13.26 0.00 0.00 2.67
3112 3673 3.058450 TCTGCCGCAAATTTTGATGTTG 58.942 40.909 13.26 0.46 0.00 3.33
3113 3674 3.383620 TCTGCCGCAAATTTTGATGTT 57.616 38.095 13.26 0.00 0.00 2.71
3146 3707 4.724074 AAATTGTCATGGATGCATTCGT 57.276 36.364 0.00 0.00 0.00 3.85
3150 3711 4.209307 TGCAAAATTGTCATGGATGCAT 57.791 36.364 0.00 0.00 37.40 3.96
3153 3714 5.231702 TGTCTTGCAAAATTGTCATGGATG 58.768 37.500 0.00 0.00 0.00 3.51
3158 3719 8.891671 AGTTTTATGTCTTGCAAAATTGTCAT 57.108 26.923 0.00 1.21 0.00 3.06
3196 3757 6.359617 CGTAGTTCTGTTTTATTGCAAACCTG 59.640 38.462 1.71 0.00 36.03 4.00
3199 3760 6.908284 TGTCGTAGTTCTGTTTTATTGCAAAC 59.092 34.615 1.71 0.00 37.20 2.93
3207 3768 7.208777 TGTATGGTTGTCGTAGTTCTGTTTTA 58.791 34.615 0.00 0.00 0.00 1.52
3208 3769 6.050432 TGTATGGTTGTCGTAGTTCTGTTTT 58.950 36.000 0.00 0.00 0.00 2.43
3209 3770 5.603596 TGTATGGTTGTCGTAGTTCTGTTT 58.396 37.500 0.00 0.00 0.00 2.83
3210 3771 5.204409 TGTATGGTTGTCGTAGTTCTGTT 57.796 39.130 0.00 0.00 0.00 3.16
3219 3780 1.346395 TGAAGGCTGTATGGTTGTCGT 59.654 47.619 0.00 0.00 0.00 4.34
3225 3786 1.372501 AACCCTGAAGGCTGTATGGT 58.627 50.000 0.00 0.00 40.58 3.55
3226 3787 2.746472 GCTAACCCTGAAGGCTGTATGG 60.746 54.545 0.00 0.00 40.58 2.74
3233 3794 1.017387 CATTCGCTAACCCTGAAGGC 58.983 55.000 0.00 0.00 40.58 4.35
3235 3796 4.035675 GGAATTCATTCGCTAACCCTGAAG 59.964 45.833 7.93 0.00 37.67 3.02
3246 3808 4.637483 TGGAATCAAGGAATTCATTCGC 57.363 40.909 7.93 3.59 37.38 4.70
3248 3810 7.919621 GTCTGATTGGAATCAAGGAATTCATTC 59.080 37.037 7.93 7.62 44.20 2.67
3269 3831 1.123861 AGCTGGCTTCTGGTGTCTGA 61.124 55.000 0.00 0.00 0.00 3.27
3270 3832 0.250640 AAGCTGGCTTCTGGTGTCTG 60.251 55.000 1.60 0.00 0.00 3.51
3275 3837 1.900498 GCACAAGCTGGCTTCTGGT 60.900 57.895 11.33 2.70 37.91 4.00
3276 3838 1.863662 CTGCACAAGCTGGCTTCTGG 61.864 60.000 11.33 2.15 42.74 3.86
3277 3839 0.887836 TCTGCACAAGCTGGCTTCTG 60.888 55.000 4.73 5.60 42.74 3.02
3283 3845 1.884579 ACTTGAATCTGCACAAGCTGG 59.115 47.619 13.15 0.00 44.75 4.85
3287 3849 4.318332 TGGTCTACTTGAATCTGCACAAG 58.682 43.478 11.97 11.97 45.85 3.16
3289 3851 4.558226 ATGGTCTACTTGAATCTGCACA 57.442 40.909 0.00 0.00 0.00 4.57
3290 3852 4.811557 GGTATGGTCTACTTGAATCTGCAC 59.188 45.833 0.00 0.00 0.00 4.57
3301 3863 4.585162 GCTGATACAGTGGTATGGTCTACT 59.415 45.833 0.00 0.00 40.28 2.57
3325 3887 0.697658 TCATGGTCATGGTGCAAGGA 59.302 50.000 10.61 0.00 39.24 3.36
3326 3888 1.100510 CTCATGGTCATGGTGCAAGG 58.899 55.000 10.61 0.00 39.24 3.61
3336 3898 0.548031 GGATTGAGCCCTCATGGTCA 59.452 55.000 0.00 0.00 40.73 4.02
3352 3914 3.744940 ATTTCCAGACATGTGGTGGAT 57.255 42.857 21.82 9.74 40.11 3.41
3367 3937 4.127171 TGCGATAAAGAGCCACTATTTCC 58.873 43.478 0.00 0.00 0.00 3.13
3375 3945 2.355756 GCAAGATTGCGATAAAGAGCCA 59.644 45.455 1.16 0.00 45.11 4.75
3376 3946 2.992242 GCAAGATTGCGATAAAGAGCC 58.008 47.619 1.16 0.00 45.11 4.70
3395 3965 1.551883 AGAATTGGTCATGCCCTTTGC 59.448 47.619 0.00 0.00 41.77 3.68
3407 3977 5.520748 AAGGGATACTTGTGAGAATTGGT 57.479 39.130 0.00 0.00 38.21 3.67
3420 3990 5.520748 AGAACAAATCACCAAGGGATACT 57.479 39.130 0.00 0.00 0.00 2.12
3497 4067 4.124238 CCATTGATTTTTATGCCTGCTGG 58.876 43.478 5.03 5.03 0.00 4.85
3498 4068 3.558418 GCCATTGATTTTTATGCCTGCTG 59.442 43.478 0.00 0.00 0.00 4.41
3527 4097 9.236006 ACATAAGACTCAGAAATTGCAAATACT 57.764 29.630 1.71 0.00 0.00 2.12
3528 4098 9.282247 CACATAAGACTCAGAAATTGCAAATAC 57.718 33.333 1.71 0.00 0.00 1.89
3529 4099 7.970061 GCACATAAGACTCAGAAATTGCAAATA 59.030 33.333 1.71 0.00 0.00 1.40
3530 4100 6.810182 GCACATAAGACTCAGAAATTGCAAAT 59.190 34.615 1.71 0.00 0.00 2.32
3533 4103 4.156556 GGCACATAAGACTCAGAAATTGCA 59.843 41.667 0.00 0.00 0.00 4.08
3534 4104 4.397417 AGGCACATAAGACTCAGAAATTGC 59.603 41.667 0.00 0.00 0.00 3.56
3535 4105 6.149973 TCAAGGCACATAAGACTCAGAAATTG 59.850 38.462 0.00 0.00 0.00 2.32
3536 4106 6.240894 TCAAGGCACATAAGACTCAGAAATT 58.759 36.000 0.00 0.00 0.00 1.82
3537 4107 5.809001 TCAAGGCACATAAGACTCAGAAAT 58.191 37.500 0.00 0.00 0.00 2.17
3540 4110 4.890158 TTCAAGGCACATAAGACTCAGA 57.110 40.909 0.00 0.00 0.00 3.27
3542 4112 3.753272 GCTTTCAAGGCACATAAGACTCA 59.247 43.478 0.00 0.00 0.00 3.41
3638 4333 5.982890 AGGGACTCAATTGGTATGTTTTG 57.017 39.130 5.42 0.00 0.00 2.44
3722 4417 6.204359 CACCTCTTTTATGCTGATACATTGC 58.796 40.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.