Multiple sequence alignment - TraesCS1D01G023900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G023900 chr1D 100.000 4160 0 0 1 4160 10066744 10062585 0.000000e+00 7683.0
1 TraesCS1D01G023900 chr1D 99.239 3153 21 1 1008 4160 9884769 9887918 0.000000e+00 5686.0
2 TraesCS1D01G023900 chr1D 95.856 2341 57 12 1849 4160 10031002 10028673 0.000000e+00 3749.0
3 TraesCS1D01G023900 chr1D 91.360 1574 86 15 1849 3383 9930649 9932211 0.000000e+00 2108.0
4 TraesCS1D01G023900 chr1D 97.015 402 10 2 442 842 9878730 9879130 0.000000e+00 675.0
5 TraesCS1D01G023900 chr1D 81.747 641 53 36 1202 1789 9929873 9930502 1.050000e-130 477.0
6 TraesCS1D01G023900 chr1D 81.747 641 53 36 1202 1789 10031778 10031149 1.050000e-130 477.0
7 TraesCS1D01G023900 chr1D 98.947 190 2 0 255 444 9878503 9878692 1.430000e-89 340.0
8 TraesCS1D01G023900 chr1D 89.754 244 21 4 1 242 3088460 3088219 4.040000e-80 309.0
9 TraesCS1D01G023900 chr1D 83.240 179 28 2 446 622 489752141 489752319 3.330000e-36 163.0
10 TraesCS1D01G023900 chr1B 89.046 1625 131 20 1795 3388 14865106 14866714 0.000000e+00 1971.0
11 TraesCS1D01G023900 chr1B 88.543 1606 137 28 1640 3217 14951925 14950339 0.000000e+00 1903.0
12 TraesCS1D01G023900 chr1B 86.866 1005 72 26 833 1790 14864015 14865006 0.000000e+00 1070.0
13 TraesCS1D01G023900 chr1B 83.933 778 49 25 840 1578 14985299 14984559 0.000000e+00 675.0
14 TraesCS1D01G023900 chr1B 87.229 462 26 14 1120 1578 14952375 14951944 2.890000e-136 496.0
15 TraesCS1D01G023900 chr1B 83.104 509 54 20 1640 2134 14984540 14984050 6.390000e-118 435.0
16 TraesCS1D01G023900 chr1B 97.143 35 1 0 3525 3559 14933930 14933896 4.490000e-05 60.2
17 TraesCS1D01G023900 chr1A 92.979 1054 60 10 2132 3176 11671310 11672358 0.000000e+00 1524.0
18 TraesCS1D01G023900 chr1A 90.493 1157 61 12 2132 3279 11730748 11729632 0.000000e+00 1482.0
19 TraesCS1D01G023900 chr1A 96.030 529 18 3 3251 3778 11740256 11739730 0.000000e+00 857.0
20 TraesCS1D01G023900 chr1A 87.768 327 16 7 3858 4160 11739733 11739407 1.100000e-95 361.0
21 TraesCS1D01G023900 chr1A 87.234 235 22 4 446 679 11666433 11666660 1.150000e-65 261.0
22 TraesCS1D01G023900 chr1A 90.957 188 16 1 257 444 11666206 11666392 6.900000e-63 252.0
23 TraesCS1D01G023900 chr1A 78.947 171 34 2 1384 1553 13266944 13267113 9.450000e-22 115.0
24 TraesCS1D01G023900 chrUn 83.933 778 49 25 840 1578 2463025 2462285 0.000000e+00 675.0
25 TraesCS1D01G023900 chrUn 96.517 402 6 3 2260 2653 478548884 478548483 0.000000e+00 658.0
26 TraesCS1D01G023900 chrUn 83.104 509 54 20 1640 2134 2462266 2461776 6.390000e-118 435.0
27 TraesCS1D01G023900 chr3D 91.322 242 20 1 1 242 543921569 543921809 3.100000e-86 329.0
28 TraesCS1D01G023900 chr3D 88.477 243 25 3 1 242 578095091 578095331 1.460000e-74 291.0
29 TraesCS1D01G023900 chr3D 94.565 92 4 1 3777 3868 146981121 146981031 1.560000e-29 141.0
30 TraesCS1D01G023900 chr3D 88.991 109 10 2 3777 3883 142497510 142497618 2.610000e-27 134.0
31 TraesCS1D01G023900 chr4D 91.250 240 18 1 1 240 15865163 15865399 1.440000e-84 324.0
32 TraesCS1D01G023900 chr5D 90.123 243 22 2 1 242 553489508 553489749 8.680000e-82 315.0
33 TraesCS1D01G023900 chr5D 88.843 242 25 2 1 241 436869826 436870066 3.140000e-76 296.0
34 TraesCS1D01G023900 chr7D 88.980 245 21 6 1 242 39040204 39040445 8.740000e-77 298.0
35 TraesCS1D01G023900 chr7D 88.618 246 21 7 1 242 101788230 101787988 4.070000e-75 292.0
36 TraesCS1D01G023900 chr7D 93.617 141 9 0 3389 3529 264761685 264761825 1.170000e-50 211.0
37 TraesCS1D01G023900 chr2D 88.843 242 25 2 1 241 610092817 610092577 3.140000e-76 296.0
38 TraesCS1D01G023900 chr2D 91.608 143 11 1 3392 3534 63708543 63708402 3.280000e-46 196.0
39 TraesCS1D01G023900 chr2D 91.034 145 12 1 3392 3535 152021461 152021317 1.180000e-45 195.0
40 TraesCS1D01G023900 chr7B 92.908 141 10 0 3389 3529 245077388 245077528 5.450000e-49 206.0
41 TraesCS1D01G023900 chr4A 91.367 139 11 1 3392 3529 548778437 548778575 5.490000e-44 189.0
42 TraesCS1D01G023900 chr7A 90.780 141 11 2 3389 3529 288934263 288934401 1.970000e-43 187.0
43 TraesCS1D01G023900 chr7A 84.568 162 23 2 462 621 593072765 593072604 4.300000e-35 159.0
44 TraesCS1D01G023900 chr7A 83.436 163 23 4 465 624 577246934 577246773 9.320000e-32 148.0
45 TraesCS1D01G023900 chr7A 96.552 87 3 0 3776 3862 126927401 126927315 1.210000e-30 145.0
46 TraesCS1D01G023900 chr3B 85.276 163 20 4 462 621 653137536 653137375 9.250000e-37 165.0
47 TraesCS1D01G023900 chr2B 84.146 164 21 5 462 621 381292304 381292142 2.000000e-33 154.0
48 TraesCS1D01G023900 chr2A 84.277 159 21 4 463 618 730033198 730033355 7.200000e-33 152.0
49 TraesCS1D01G023900 chr2A 96.591 88 3 0 3777 3864 771514792 771514879 3.350000e-31 147.0
50 TraesCS1D01G023900 chr3A 83.636 165 20 6 462 621 726338867 726339029 9.320000e-32 148.0
51 TraesCS1D01G023900 chr3A 93.617 94 5 1 3769 3862 32991429 32991337 5.610000e-29 139.0
52 TraesCS1D01G023900 chr5A 94.565 92 5 0 3770 3861 64382098 64382189 4.340000e-30 143.0
53 TraesCS1D01G023900 chr5A 94.624 93 4 1 3777 3868 178391494 178391586 4.340000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G023900 chr1D 10062585 10066744 4159 True 7683.0 7683 100.0000 1 4160 1 chr1D.!!$R2 4159
1 TraesCS1D01G023900 chr1D 9884769 9887918 3149 False 5686.0 5686 99.2390 1008 4160 1 chr1D.!!$F1 3152
2 TraesCS1D01G023900 chr1D 10028673 10031778 3105 True 2113.0 3749 88.8015 1202 4160 2 chr1D.!!$R3 2958
3 TraesCS1D01G023900 chr1D 9929873 9932211 2338 False 1292.5 2108 86.5535 1202 3383 2 chr1D.!!$F4 2181
4 TraesCS1D01G023900 chr1D 9878503 9879130 627 False 507.5 675 97.9810 255 842 2 chr1D.!!$F3 587
5 TraesCS1D01G023900 chr1B 14864015 14866714 2699 False 1520.5 1971 87.9560 833 3388 2 chr1B.!!$F1 2555
6 TraesCS1D01G023900 chr1B 14950339 14952375 2036 True 1199.5 1903 87.8860 1120 3217 2 chr1B.!!$R2 2097
7 TraesCS1D01G023900 chr1B 14984050 14985299 1249 True 555.0 675 83.5185 840 2134 2 chr1B.!!$R3 1294
8 TraesCS1D01G023900 chr1A 11671310 11672358 1048 False 1524.0 1524 92.9790 2132 3176 1 chr1A.!!$F1 1044
9 TraesCS1D01G023900 chr1A 11729632 11730748 1116 True 1482.0 1482 90.4930 2132 3279 1 chr1A.!!$R1 1147
10 TraesCS1D01G023900 chr1A 11739407 11740256 849 True 609.0 857 91.8990 3251 4160 2 chr1A.!!$R2 909
11 TraesCS1D01G023900 chrUn 2461776 2463025 1249 True 555.0 675 83.5185 840 2134 2 chrUn.!!$R2 1294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.035739 GTACCGGTTGGAGCCAAGAA 59.964 55.0 15.04 0.0 39.21 2.52 F
231 232 0.035739 GTTGGAGCCAAGAACCGGTA 59.964 55.0 8.00 0.0 36.52 4.02 F
737 779 0.266152 ACCTGACCTAGCTAGCCCAT 59.734 55.0 15.74 0.0 0.00 4.00 F
821 863 1.263356 CACTCCCGTAGTTTCCTCCA 58.737 55.0 0.00 0.0 35.76 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 1329 1.337384 CCATGACGATCCCTGTCCCA 61.337 60.000 0.00 0.00 35.46 4.37 R
2614 2952 6.473455 GCCAACCTTGATTTTAAGATCAATCG 59.527 38.462 18.67 14.62 43.10 3.34 R
3134 3475 3.516300 TGATGTTACCACAGGATTACCGT 59.484 43.478 0.00 0.00 41.83 4.83 R
3834 4185 6.785963 ACTCCCTCCGTCCAATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.996434 GCTCACAGGGCAGCGTGT 62.996 66.667 0.00 0.00 34.66 4.49
21 22 2.656646 CTCACAGGGCAGCGTGTA 59.343 61.111 0.00 0.00 34.66 2.90
22 23 1.005037 CTCACAGGGCAGCGTGTAA 60.005 57.895 0.00 0.00 34.66 2.41
23 24 0.602638 CTCACAGGGCAGCGTGTAAA 60.603 55.000 0.00 0.00 34.66 2.01
24 25 0.602638 TCACAGGGCAGCGTGTAAAG 60.603 55.000 0.00 0.00 34.66 1.85
25 26 0.884704 CACAGGGCAGCGTGTAAAGT 60.885 55.000 0.00 0.00 0.00 2.66
26 27 0.179029 ACAGGGCAGCGTGTAAAGTT 60.179 50.000 0.00 0.00 0.00 2.66
27 28 1.071071 ACAGGGCAGCGTGTAAAGTTA 59.929 47.619 0.00 0.00 0.00 2.24
28 29 1.732259 CAGGGCAGCGTGTAAAGTTAG 59.268 52.381 0.00 0.00 0.00 2.34
29 30 1.084289 GGGCAGCGTGTAAAGTTAGG 58.916 55.000 0.00 0.00 0.00 2.69
30 31 0.446616 GGCAGCGTGTAAAGTTAGGC 59.553 55.000 0.00 0.00 0.00 3.93
31 32 0.446616 GCAGCGTGTAAAGTTAGGCC 59.553 55.000 0.00 0.00 0.00 5.19
32 33 1.084289 CAGCGTGTAAAGTTAGGCCC 58.916 55.000 0.00 0.00 0.00 5.80
33 34 0.688487 AGCGTGTAAAGTTAGGCCCA 59.312 50.000 0.00 0.00 0.00 5.36
34 35 1.084289 GCGTGTAAAGTTAGGCCCAG 58.916 55.000 0.00 0.00 0.00 4.45
35 36 1.338389 GCGTGTAAAGTTAGGCCCAGA 60.338 52.381 0.00 0.00 0.00 3.86
36 37 2.872842 GCGTGTAAAGTTAGGCCCAGAA 60.873 50.000 0.00 0.00 0.00 3.02
37 38 3.000727 CGTGTAAAGTTAGGCCCAGAAG 58.999 50.000 0.00 0.00 0.00 2.85
38 39 2.747989 GTGTAAAGTTAGGCCCAGAAGC 59.252 50.000 0.00 0.00 0.00 3.86
49 50 3.186702 GCCCAGAAGCCTACTTTAGAG 57.813 52.381 0.00 0.00 35.82 2.43
50 51 2.502130 GCCCAGAAGCCTACTTTAGAGT 59.498 50.000 0.00 0.00 35.82 3.24
51 52 3.680196 GCCCAGAAGCCTACTTTAGAGTG 60.680 52.174 0.00 0.00 35.82 3.51
52 53 3.769844 CCCAGAAGCCTACTTTAGAGTGA 59.230 47.826 0.00 0.00 35.82 3.41
53 54 4.223032 CCCAGAAGCCTACTTTAGAGTGAA 59.777 45.833 0.00 0.00 35.82 3.18
54 55 5.415221 CCAGAAGCCTACTTTAGAGTGAAG 58.585 45.833 0.00 0.00 35.82 3.02
55 56 4.867608 CAGAAGCCTACTTTAGAGTGAAGC 59.132 45.833 0.00 0.00 35.82 3.86
56 57 4.775253 AGAAGCCTACTTTAGAGTGAAGCT 59.225 41.667 0.00 0.00 37.99 3.74
57 58 5.247337 AGAAGCCTACTTTAGAGTGAAGCTT 59.753 40.000 14.94 14.94 43.43 3.74
58 59 4.826556 AGCCTACTTTAGAGTGAAGCTTG 58.173 43.478 2.10 0.00 34.93 4.01
59 60 4.528596 AGCCTACTTTAGAGTGAAGCTTGA 59.471 41.667 2.10 0.00 34.93 3.02
60 61 5.012148 AGCCTACTTTAGAGTGAAGCTTGAA 59.988 40.000 2.10 0.00 34.93 2.69
61 62 5.701290 GCCTACTTTAGAGTGAAGCTTGAAA 59.299 40.000 2.10 0.00 36.60 2.69
62 63 6.128418 GCCTACTTTAGAGTGAAGCTTGAAAG 60.128 42.308 2.10 6.38 36.60 2.62
63 64 7.155328 CCTACTTTAGAGTGAAGCTTGAAAGA 58.845 38.462 2.10 0.00 36.60 2.52
64 65 7.821846 CCTACTTTAGAGTGAAGCTTGAAAGAT 59.178 37.037 2.10 0.00 36.60 2.40
65 66 7.665561 ACTTTAGAGTGAAGCTTGAAAGATC 57.334 36.000 2.10 0.00 35.21 2.75
66 67 7.220030 ACTTTAGAGTGAAGCTTGAAAGATCA 58.780 34.615 2.10 0.00 35.21 2.92
67 68 7.387397 ACTTTAGAGTGAAGCTTGAAAGATCAG 59.613 37.037 2.10 0.00 33.86 2.90
68 69 5.226194 AGAGTGAAGCTTGAAAGATCAGT 57.774 39.130 2.10 0.00 36.78 3.41
69 70 5.237048 AGAGTGAAGCTTGAAAGATCAGTC 58.763 41.667 2.10 17.67 40.44 3.51
70 71 3.993081 AGTGAAGCTTGAAAGATCAGTCG 59.007 43.478 2.10 0.00 36.78 4.18
71 72 2.738846 TGAAGCTTGAAAGATCAGTCGC 59.261 45.455 2.10 0.00 36.78 5.19
72 73 1.354040 AGCTTGAAAGATCAGTCGCG 58.646 50.000 0.00 0.00 36.78 5.87
73 74 0.371645 GCTTGAAAGATCAGTCGCGG 59.628 55.000 6.13 0.00 36.78 6.46
74 75 0.371645 CTTGAAAGATCAGTCGCGGC 59.628 55.000 0.21 0.21 36.78 6.53
75 76 0.037326 TTGAAAGATCAGTCGCGGCT 60.037 50.000 7.80 7.80 36.78 5.52
76 77 0.737367 TGAAAGATCAGTCGCGGCTG 60.737 55.000 33.96 33.96 37.81 4.85
77 78 1.424493 GAAAGATCAGTCGCGGCTGG 61.424 60.000 37.47 20.70 37.12 4.85
78 79 2.859273 AAAGATCAGTCGCGGCTGGG 62.859 60.000 37.47 16.53 37.12 4.45
79 80 4.148825 GATCAGTCGCGGCTGGGT 62.149 66.667 37.47 26.96 37.12 4.51
80 81 3.665675 GATCAGTCGCGGCTGGGTT 62.666 63.158 37.47 23.62 37.12 4.11
81 82 3.254024 ATCAGTCGCGGCTGGGTTT 62.254 57.895 37.47 18.86 37.12 3.27
82 83 1.895020 ATCAGTCGCGGCTGGGTTTA 61.895 55.000 37.47 20.66 37.12 2.01
83 84 1.449601 CAGTCGCGGCTGGGTTTAT 60.450 57.895 32.36 0.00 33.11 1.40
84 85 0.179094 CAGTCGCGGCTGGGTTTATA 60.179 55.000 32.36 0.00 33.11 0.98
85 86 0.538118 AGTCGCGGCTGGGTTTATAA 59.462 50.000 14.96 0.00 0.00 0.98
86 87 1.065998 AGTCGCGGCTGGGTTTATAAA 60.066 47.619 14.96 0.00 0.00 1.40
87 88 1.063027 GTCGCGGCTGGGTTTATAAAC 59.937 52.381 18.30 18.30 38.17 2.01
88 89 1.065998 TCGCGGCTGGGTTTATAAACT 60.066 47.619 23.89 0.00 38.89 2.66
89 90 2.168106 TCGCGGCTGGGTTTATAAACTA 59.832 45.455 23.89 14.32 38.89 2.24
90 91 2.542595 CGCGGCTGGGTTTATAAACTAG 59.457 50.000 23.89 21.53 38.89 2.57
91 92 3.538591 GCGGCTGGGTTTATAAACTAGT 58.461 45.455 23.89 0.00 38.89 2.57
92 93 3.311596 GCGGCTGGGTTTATAAACTAGTG 59.688 47.826 23.89 18.36 38.89 2.74
93 94 4.510571 CGGCTGGGTTTATAAACTAGTGT 58.489 43.478 23.89 0.00 38.89 3.55
94 95 4.331717 CGGCTGGGTTTATAAACTAGTGTG 59.668 45.833 23.89 13.61 38.89 3.82
95 96 4.638865 GGCTGGGTTTATAAACTAGTGTGG 59.361 45.833 23.89 11.00 38.89 4.17
96 97 4.095932 GCTGGGTTTATAAACTAGTGTGGC 59.904 45.833 23.89 15.40 38.89 5.01
97 98 5.497474 CTGGGTTTATAAACTAGTGTGGCT 58.503 41.667 23.89 0.00 38.89 4.75
98 99 5.250200 TGGGTTTATAAACTAGTGTGGCTG 58.750 41.667 23.89 0.00 38.89 4.85
99 100 4.095932 GGGTTTATAAACTAGTGTGGCTGC 59.904 45.833 23.89 6.35 38.89 5.25
100 101 4.095932 GGTTTATAAACTAGTGTGGCTGCC 59.904 45.833 23.89 12.87 38.89 4.85
101 102 2.420058 ATAAACTAGTGTGGCTGCCC 57.580 50.000 17.53 8.23 0.00 5.36
102 103 1.358152 TAAACTAGTGTGGCTGCCCT 58.642 50.000 17.53 8.73 0.00 5.19
103 104 0.478507 AAACTAGTGTGGCTGCCCTT 59.521 50.000 17.53 1.33 0.00 3.95
104 105 0.036875 AACTAGTGTGGCTGCCCTTC 59.963 55.000 17.53 7.42 0.00 3.46
105 106 1.448540 CTAGTGTGGCTGCCCTTCG 60.449 63.158 17.53 0.00 0.00 3.79
106 107 3.605749 TAGTGTGGCTGCCCTTCGC 62.606 63.158 17.53 12.88 38.31 4.70
108 109 4.704833 TGTGGCTGCCCTTCGCTC 62.705 66.667 17.53 0.00 38.78 5.03
123 124 2.439701 CTCGGCGAGGTGGGACTA 60.440 66.667 28.52 0.00 0.00 2.59
124 125 2.036098 TCGGCGAGGTGGGACTAA 59.964 61.111 4.99 0.00 0.00 2.24
125 126 1.601419 CTCGGCGAGGTGGGACTAAA 61.601 60.000 28.52 0.00 0.00 1.85
126 127 1.447314 CGGCGAGGTGGGACTAAAC 60.447 63.158 0.00 0.00 0.00 2.01
127 128 1.675219 GGCGAGGTGGGACTAAACA 59.325 57.895 0.00 0.00 0.00 2.83
128 129 0.672711 GGCGAGGTGGGACTAAACAC 60.673 60.000 0.00 0.00 36.89 3.32
129 130 0.320697 GCGAGGTGGGACTAAACACT 59.679 55.000 0.00 0.00 37.72 3.55
130 131 1.939838 GCGAGGTGGGACTAAACACTG 60.940 57.143 0.00 0.00 37.72 3.66
131 132 1.343465 CGAGGTGGGACTAAACACTGT 59.657 52.381 0.00 0.00 37.72 3.55
132 133 2.767505 GAGGTGGGACTAAACACTGTG 58.232 52.381 6.19 6.19 37.72 3.66
133 134 1.202770 AGGTGGGACTAAACACTGTGC 60.203 52.381 7.90 0.00 37.72 4.57
134 135 1.476110 GGTGGGACTAAACACTGTGCA 60.476 52.381 7.90 0.00 37.72 4.57
135 136 1.602377 GTGGGACTAAACACTGTGCAC 59.398 52.381 10.75 10.75 34.84 4.57
136 137 1.235724 GGGACTAAACACTGTGCACC 58.764 55.000 15.69 0.00 0.00 5.01
137 138 0.865769 GGACTAAACACTGTGCACCG 59.134 55.000 15.69 11.05 0.00 4.94
138 139 0.234884 GACTAAACACTGTGCACCGC 59.765 55.000 15.69 0.00 0.00 5.68
139 140 1.204062 CTAAACACTGTGCACCGCG 59.796 57.895 15.69 4.31 0.00 6.46
140 141 2.170260 CTAAACACTGTGCACCGCGG 62.170 60.000 26.86 26.86 0.00 6.46
158 159 2.519302 GTGGCAGTGCACACCCTT 60.519 61.111 21.04 0.00 0.00 3.95
159 160 2.127232 GTGGCAGTGCACACCCTTT 61.127 57.895 21.04 0.00 0.00 3.11
160 161 0.821711 GTGGCAGTGCACACCCTTTA 60.822 55.000 21.04 1.05 0.00 1.85
161 162 0.537143 TGGCAGTGCACACCCTTTAG 60.537 55.000 21.04 0.00 0.00 1.85
162 163 0.537371 GGCAGTGCACACCCTTTAGT 60.537 55.000 21.04 0.00 0.00 2.24
163 164 1.271163 GGCAGTGCACACCCTTTAGTA 60.271 52.381 21.04 0.00 0.00 1.82
164 165 1.804748 GCAGTGCACACCCTTTAGTAC 59.195 52.381 21.04 0.00 0.00 2.73
165 166 2.423577 CAGTGCACACCCTTTAGTACC 58.576 52.381 21.04 0.00 0.00 3.34
166 167 1.001633 AGTGCACACCCTTTAGTACCG 59.998 52.381 21.04 0.00 0.00 4.02
167 168 0.322322 TGCACACCCTTTAGTACCGG 59.678 55.000 0.00 0.00 0.00 5.28
168 169 0.322648 GCACACCCTTTAGTACCGGT 59.677 55.000 13.98 13.98 0.00 5.28
169 170 1.271001 GCACACCCTTTAGTACCGGTT 60.271 52.381 15.04 0.00 0.00 4.44
170 171 2.419667 CACACCCTTTAGTACCGGTTG 58.580 52.381 15.04 3.53 0.00 3.77
171 172 1.348696 ACACCCTTTAGTACCGGTTGG 59.651 52.381 15.04 5.94 42.84 3.77
186 187 2.527123 TGGTGGCTCCAACCGGTA 60.527 61.111 8.00 0.00 44.12 4.02
187 188 2.046604 GGTGGCTCCAACCGGTAC 60.047 66.667 8.00 0.00 35.97 3.34
188 189 2.590114 GGTGGCTCCAACCGGTACT 61.590 63.158 8.00 0.00 35.97 2.73
189 190 1.259840 GGTGGCTCCAACCGGTACTA 61.260 60.000 8.00 0.00 35.97 1.82
190 191 0.609662 GTGGCTCCAACCGGTACTAA 59.390 55.000 8.00 0.00 0.00 2.24
191 192 1.208776 GTGGCTCCAACCGGTACTAAT 59.791 52.381 8.00 0.00 0.00 1.73
192 193 1.208535 TGGCTCCAACCGGTACTAATG 59.791 52.381 8.00 0.73 0.00 1.90
193 194 1.474498 GGCTCCAACCGGTACTAATGG 60.474 57.143 15.01 15.01 0.00 3.16
194 195 1.474498 GCTCCAACCGGTACTAATGGG 60.474 57.143 19.74 12.55 0.00 4.00
195 196 1.140252 CTCCAACCGGTACTAATGGGG 59.860 57.143 19.74 14.29 0.00 4.96
196 197 0.181824 CCAACCGGTACTAATGGGGG 59.818 60.000 8.00 0.00 0.00 5.40
212 213 4.435970 GGGGGCCTTTGGTACCGG 62.436 72.222 7.57 0.00 0.00 5.28
213 214 3.654143 GGGGCCTTTGGTACCGGT 61.654 66.667 13.98 13.98 0.00 5.28
214 215 2.437449 GGGCCTTTGGTACCGGTT 59.563 61.111 15.04 0.00 0.00 4.44
215 216 1.974875 GGGCCTTTGGTACCGGTTG 60.975 63.158 15.04 0.00 0.00 3.77
216 217 1.974875 GGCCTTTGGTACCGGTTGG 60.975 63.158 15.04 7.23 42.84 3.77
217 218 1.073548 GCCTTTGGTACCGGTTGGA 59.926 57.895 15.04 0.00 39.21 3.53
218 219 0.958876 GCCTTTGGTACCGGTTGGAG 60.959 60.000 15.04 4.23 39.21 3.86
219 220 0.958876 CCTTTGGTACCGGTTGGAGC 60.959 60.000 15.04 4.98 39.21 4.70
220 221 0.958876 CTTTGGTACCGGTTGGAGCC 60.959 60.000 15.04 8.63 39.21 4.70
221 222 1.706995 TTTGGTACCGGTTGGAGCCA 61.707 55.000 15.04 11.33 39.50 4.75
222 223 1.706995 TTGGTACCGGTTGGAGCCAA 61.707 55.000 15.04 16.63 44.19 4.52
223 224 1.376812 GGTACCGGTTGGAGCCAAG 60.377 63.158 15.04 0.00 39.21 3.61
224 225 1.675219 GTACCGGTTGGAGCCAAGA 59.325 57.895 15.04 0.00 39.21 3.02
225 226 0.035739 GTACCGGTTGGAGCCAAGAA 59.964 55.000 15.04 0.00 39.21 2.52
226 227 0.035739 TACCGGTTGGAGCCAAGAAC 59.964 55.000 15.04 0.00 39.21 3.01
227 228 1.971695 CCGGTTGGAGCCAAGAACC 60.972 63.158 1.41 0.46 36.52 3.62
228 229 3.668386 GGTTGGAGCCAAGAACCG 58.332 61.111 1.41 0.00 36.52 4.44
229 230 1.971695 GGTTGGAGCCAAGAACCGG 60.972 63.158 0.00 0.00 36.52 5.28
230 231 1.228154 GTTGGAGCCAAGAACCGGT 60.228 57.895 0.00 0.00 36.52 5.28
231 232 0.035739 GTTGGAGCCAAGAACCGGTA 59.964 55.000 8.00 0.00 36.52 4.02
232 233 0.035739 TTGGAGCCAAGAACCGGTAC 59.964 55.000 8.00 0.00 0.00 3.34
381 382 4.892433 TCTGTCGGGAAATAAAAACCGTA 58.108 39.130 0.00 0.00 46.06 4.02
403 404 8.122330 CCGTATGTAAACTATCGTACTGTACAA 58.878 37.037 17.35 0.00 0.00 2.41
490 531 7.598118 TGCTCGCATTTTCTGAATTTATTTCAA 59.402 29.630 0.00 0.00 43.64 2.69
558 599 3.194968 CACGAGGTACCTATGGTGACTTT 59.805 47.826 25.24 0.00 36.19 2.66
596 637 1.195115 ATGCCGGCTTAGTCTCTTGA 58.805 50.000 29.70 1.81 0.00 3.02
693 735 3.742433 TGTTTACATGCCCAACCAAAG 57.258 42.857 0.00 0.00 0.00 2.77
694 736 3.300388 TGTTTACATGCCCAACCAAAGA 58.700 40.909 0.00 0.00 0.00 2.52
695 737 3.900601 TGTTTACATGCCCAACCAAAGAT 59.099 39.130 0.00 0.00 0.00 2.40
696 738 4.244862 GTTTACATGCCCAACCAAAGATG 58.755 43.478 0.00 0.00 0.00 2.90
697 739 0.609662 ACATGCCCAACCAAAGATGC 59.390 50.000 0.00 0.00 0.00 3.91
698 740 0.899720 CATGCCCAACCAAAGATGCT 59.100 50.000 0.00 0.00 0.00 3.79
699 741 0.899720 ATGCCCAACCAAAGATGCTG 59.100 50.000 0.00 0.00 0.00 4.41
700 742 1.079612 GCCCAACCAAAGATGCTGC 60.080 57.895 0.00 0.00 0.00 5.25
701 743 1.593265 CCCAACCAAAGATGCTGCC 59.407 57.895 0.00 0.00 0.00 4.85
702 744 0.901580 CCCAACCAAAGATGCTGCCT 60.902 55.000 0.00 0.00 0.00 4.75
703 745 0.529378 CCAACCAAAGATGCTGCCTC 59.471 55.000 0.00 0.00 0.00 4.70
704 746 1.542492 CAACCAAAGATGCTGCCTCT 58.458 50.000 1.31 1.31 0.00 3.69
705 747 2.618816 CCAACCAAAGATGCTGCCTCTA 60.619 50.000 7.88 0.00 0.00 2.43
706 748 2.681848 CAACCAAAGATGCTGCCTCTAG 59.318 50.000 7.88 4.47 0.00 2.43
707 749 1.211457 ACCAAAGATGCTGCCTCTAGG 59.789 52.381 18.24 18.24 38.53 3.02
708 750 1.487976 CCAAAGATGCTGCCTCTAGGA 59.512 52.381 16.17 0.00 37.39 2.94
709 751 2.092753 CCAAAGATGCTGCCTCTAGGAA 60.093 50.000 16.17 0.00 37.39 3.36
710 752 3.614092 CAAAGATGCTGCCTCTAGGAAA 58.386 45.455 7.88 0.00 37.39 3.13
711 753 3.557228 AAGATGCTGCCTCTAGGAAAG 57.443 47.619 7.88 0.00 37.39 2.62
712 754 2.756907 AGATGCTGCCTCTAGGAAAGA 58.243 47.619 5.60 0.00 37.39 2.52
723 765 4.659529 TCTAGGAAAGAGAGACACCTGA 57.340 45.455 0.00 0.00 32.90 3.86
724 766 4.337145 TCTAGGAAAGAGAGACACCTGAC 58.663 47.826 0.00 0.00 32.90 3.51
725 767 2.252714 AGGAAAGAGAGACACCTGACC 58.747 52.381 0.00 0.00 0.00 4.02
726 768 2.158234 AGGAAAGAGAGACACCTGACCT 60.158 50.000 0.00 0.00 0.00 3.85
727 769 3.076182 AGGAAAGAGAGACACCTGACCTA 59.924 47.826 0.00 0.00 0.00 3.08
728 770 3.445805 GGAAAGAGAGACACCTGACCTAG 59.554 52.174 0.00 0.00 0.00 3.02
729 771 2.137810 AGAGAGACACCTGACCTAGC 57.862 55.000 0.00 0.00 0.00 3.42
730 772 1.638589 AGAGAGACACCTGACCTAGCT 59.361 52.381 0.00 0.00 0.00 3.32
731 773 2.847449 AGAGAGACACCTGACCTAGCTA 59.153 50.000 0.00 0.00 0.00 3.32
732 774 3.118038 AGAGAGACACCTGACCTAGCTAG 60.118 52.174 14.20 14.20 0.00 3.42
733 775 1.679153 GAGACACCTGACCTAGCTAGC 59.321 57.143 15.74 6.62 0.00 3.42
734 776 0.747852 GACACCTGACCTAGCTAGCC 59.252 60.000 15.74 9.53 0.00 3.93
735 777 0.688087 ACACCTGACCTAGCTAGCCC 60.688 60.000 15.74 9.18 0.00 5.19
736 778 0.687757 CACCTGACCTAGCTAGCCCA 60.688 60.000 15.74 13.08 0.00 5.36
737 779 0.266152 ACCTGACCTAGCTAGCCCAT 59.734 55.000 15.74 0.00 0.00 4.00
738 780 1.503784 ACCTGACCTAGCTAGCCCATA 59.496 52.381 15.74 0.00 0.00 2.74
739 781 2.090719 ACCTGACCTAGCTAGCCCATAA 60.091 50.000 15.74 0.00 0.00 1.90
740 782 2.972713 CCTGACCTAGCTAGCCCATAAA 59.027 50.000 15.74 0.00 0.00 1.40
741 783 3.244249 CCTGACCTAGCTAGCCCATAAAC 60.244 52.174 15.74 0.00 0.00 2.01
742 784 3.643792 CTGACCTAGCTAGCCCATAAACT 59.356 47.826 15.74 0.00 0.00 2.66
743 785 4.037927 TGACCTAGCTAGCCCATAAACTT 58.962 43.478 15.74 0.00 0.00 2.66
744 786 4.101119 TGACCTAGCTAGCCCATAAACTTC 59.899 45.833 15.74 0.00 0.00 3.01
745 787 4.037927 ACCTAGCTAGCCCATAAACTTCA 58.962 43.478 15.74 0.00 0.00 3.02
746 788 4.473559 ACCTAGCTAGCCCATAAACTTCAA 59.526 41.667 15.74 0.00 0.00 2.69
747 789 5.045140 ACCTAGCTAGCCCATAAACTTCAAA 60.045 40.000 15.74 0.00 0.00 2.69
748 790 5.885912 CCTAGCTAGCCCATAAACTTCAAAA 59.114 40.000 15.74 0.00 0.00 2.44
749 791 6.547510 CCTAGCTAGCCCATAAACTTCAAAAT 59.452 38.462 15.74 0.00 0.00 1.82
750 792 6.857437 AGCTAGCCCATAAACTTCAAAATT 57.143 33.333 12.13 0.00 0.00 1.82
751 793 7.954666 AGCTAGCCCATAAACTTCAAAATTA 57.045 32.000 12.13 0.00 0.00 1.40
752 794 8.000780 AGCTAGCCCATAAACTTCAAAATTAG 57.999 34.615 12.13 0.00 0.00 1.73
753 795 7.834181 AGCTAGCCCATAAACTTCAAAATTAGA 59.166 33.333 12.13 0.00 0.00 2.10
754 796 8.131731 GCTAGCCCATAAACTTCAAAATTAGAG 58.868 37.037 2.29 0.00 0.00 2.43
755 797 7.410120 AGCCCATAAACTTCAAAATTAGAGG 57.590 36.000 0.00 0.00 0.00 3.69
756 798 6.042777 GCCCATAAACTTCAAAATTAGAGGC 58.957 40.000 0.00 0.00 0.00 4.70
757 799 6.127338 GCCCATAAACTTCAAAATTAGAGGCT 60.127 38.462 0.00 0.00 32.26 4.58
758 800 7.484140 CCCATAAACTTCAAAATTAGAGGCTC 58.516 38.462 6.34 6.34 0.00 4.70
759 801 7.122650 CCCATAAACTTCAAAATTAGAGGCTCA 59.877 37.037 18.26 0.00 0.00 4.26
760 802 8.522830 CCATAAACTTCAAAATTAGAGGCTCAA 58.477 33.333 18.26 9.40 0.00 3.02
761 803 9.565213 CATAAACTTCAAAATTAGAGGCTCAAG 57.435 33.333 18.26 10.95 0.00 3.02
762 804 6.581171 AACTTCAAAATTAGAGGCTCAAGG 57.419 37.500 18.26 0.00 0.00 3.61
763 805 5.635120 ACTTCAAAATTAGAGGCTCAAGGT 58.365 37.500 18.26 0.00 0.00 3.50
764 806 6.071320 ACTTCAAAATTAGAGGCTCAAGGTT 58.929 36.000 18.26 2.50 0.00 3.50
765 807 6.551227 ACTTCAAAATTAGAGGCTCAAGGTTT 59.449 34.615 18.26 8.65 0.00 3.27
766 808 7.724061 ACTTCAAAATTAGAGGCTCAAGGTTTA 59.276 33.333 18.26 0.00 0.00 2.01
767 809 8.472007 TTCAAAATTAGAGGCTCAAGGTTTAA 57.528 30.769 18.26 5.71 0.00 1.52
768 810 8.472007 TCAAAATTAGAGGCTCAAGGTTTAAA 57.528 30.769 18.26 1.62 0.00 1.52
769 811 8.357402 TCAAAATTAGAGGCTCAAGGTTTAAAC 58.643 33.333 18.26 9.98 0.00 2.01
770 812 7.833285 AAATTAGAGGCTCAAGGTTTAAACA 57.167 32.000 18.26 0.00 0.00 2.83
771 813 8.422577 AAATTAGAGGCTCAAGGTTTAAACAT 57.577 30.769 18.26 10.32 0.00 2.71
772 814 8.422577 AATTAGAGGCTCAAGGTTTAAACATT 57.577 30.769 18.26 15.99 32.48 2.71
773 815 5.966742 AGAGGCTCAAGGTTTAAACATTC 57.033 39.130 18.26 7.40 29.39 2.67
774 816 5.635120 AGAGGCTCAAGGTTTAAACATTCT 58.365 37.500 18.26 11.64 29.39 2.40
775 817 6.779860 AGAGGCTCAAGGTTTAAACATTCTA 58.220 36.000 18.26 8.52 29.39 2.10
776 818 6.881602 AGAGGCTCAAGGTTTAAACATTCTAG 59.118 38.462 18.26 17.08 29.39 2.43
777 819 5.416013 AGGCTCAAGGTTTAAACATTCTAGC 59.584 40.000 26.34 26.34 37.70 3.42
778 820 5.183140 GGCTCAAGGTTTAAACATTCTAGCA 59.817 40.000 30.65 11.72 39.00 3.49
779 821 6.317857 GCTCAAGGTTTAAACATTCTAGCAG 58.682 40.000 27.87 14.44 38.03 4.24
780 822 6.072452 GCTCAAGGTTTAAACATTCTAGCAGT 60.072 38.462 27.87 4.80 38.03 4.40
781 823 7.522236 GCTCAAGGTTTAAACATTCTAGCAGTT 60.522 37.037 27.87 4.23 38.03 3.16
782 824 8.232913 TCAAGGTTTAAACATTCTAGCAGTTT 57.767 30.769 19.57 10.43 38.79 2.66
783 825 8.691797 TCAAGGTTTAAACATTCTAGCAGTTTT 58.308 29.630 19.57 0.00 36.85 2.43
784 826 8.755018 CAAGGTTTAAACATTCTAGCAGTTTTG 58.245 33.333 19.57 0.20 36.85 2.44
802 844 8.591698 CAGTTTTGCAAAATCTTTTTGAGAAC 57.408 30.769 26.24 10.33 38.06 3.01
803 845 8.229137 CAGTTTTGCAAAATCTTTTTGAGAACA 58.771 29.630 26.24 0.00 38.06 3.18
804 846 8.229811 AGTTTTGCAAAATCTTTTTGAGAACAC 58.770 29.630 26.24 9.30 38.06 3.32
805 847 7.903995 TTTGCAAAATCTTTTTGAGAACACT 57.096 28.000 10.02 0.00 38.06 3.55
806 848 7.524294 TTGCAAAATCTTTTTGAGAACACTC 57.476 32.000 15.00 0.00 38.06 3.51
807 849 6.042143 TGCAAAATCTTTTTGAGAACACTCC 58.958 36.000 15.00 0.00 38.06 3.85
808 850 5.463392 GCAAAATCTTTTTGAGAACACTCCC 59.537 40.000 15.00 0.00 38.06 4.30
809 851 5.438761 AAATCTTTTTGAGAACACTCCCG 57.561 39.130 0.00 0.00 38.06 5.14
810 852 3.553828 TCTTTTTGAGAACACTCCCGT 57.446 42.857 0.00 0.00 0.00 5.28
811 853 4.675976 TCTTTTTGAGAACACTCCCGTA 57.324 40.909 0.00 0.00 0.00 4.02
812 854 4.628074 TCTTTTTGAGAACACTCCCGTAG 58.372 43.478 0.00 0.00 0.00 3.51
813 855 4.100498 TCTTTTTGAGAACACTCCCGTAGT 59.900 41.667 0.00 0.00 39.81 2.73
814 856 4.411256 TTTTGAGAACACTCCCGTAGTT 57.589 40.909 0.00 0.00 35.76 2.24
815 857 4.411256 TTTGAGAACACTCCCGTAGTTT 57.589 40.909 0.00 0.00 35.76 2.66
816 858 3.655276 TGAGAACACTCCCGTAGTTTC 57.345 47.619 0.00 0.00 35.76 2.78
817 859 2.298163 TGAGAACACTCCCGTAGTTTCC 59.702 50.000 0.00 0.00 35.76 3.13
818 860 2.561858 GAGAACACTCCCGTAGTTTCCT 59.438 50.000 0.00 0.00 35.76 3.36
819 861 2.561858 AGAACACTCCCGTAGTTTCCTC 59.438 50.000 0.00 0.00 35.76 3.71
820 862 1.264295 ACACTCCCGTAGTTTCCTCC 58.736 55.000 0.00 0.00 35.76 4.30
821 863 1.263356 CACTCCCGTAGTTTCCTCCA 58.737 55.000 0.00 0.00 35.76 3.86
822 864 1.621814 CACTCCCGTAGTTTCCTCCAA 59.378 52.381 0.00 0.00 35.76 3.53
823 865 1.622312 ACTCCCGTAGTTTCCTCCAAC 59.378 52.381 0.00 0.00 33.35 3.77
824 866 1.900486 CTCCCGTAGTTTCCTCCAACT 59.100 52.381 0.00 0.00 40.28 3.16
825 867 1.897802 TCCCGTAGTTTCCTCCAACTC 59.102 52.381 0.00 0.00 38.07 3.01
826 868 1.900486 CCCGTAGTTTCCTCCAACTCT 59.100 52.381 0.00 0.00 38.07 3.24
827 869 2.302157 CCCGTAGTTTCCTCCAACTCTT 59.698 50.000 0.00 0.00 38.07 2.85
828 870 3.244457 CCCGTAGTTTCCTCCAACTCTTT 60.244 47.826 0.00 0.00 38.07 2.52
829 871 3.746492 CCGTAGTTTCCTCCAACTCTTTG 59.254 47.826 0.00 0.00 38.07 2.77
3357 3708 7.744087 AGTGTATTATGCTGAAAGTTGAACA 57.256 32.000 0.00 0.00 35.30 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.589654 TACACGCTGCCCTGTGAGC 62.590 63.158 12.12 0.00 39.38 4.26
4 5 0.602638 TTTACACGCTGCCCTGTGAG 60.603 55.000 12.12 0.00 39.38 3.51
6 7 0.884704 ACTTTACACGCTGCCCTGTG 60.885 55.000 7.65 6.30 41.81 3.66
7 8 0.179029 AACTTTACACGCTGCCCTGT 60.179 50.000 0.00 0.00 0.00 4.00
8 9 1.732259 CTAACTTTACACGCTGCCCTG 59.268 52.381 0.00 0.00 0.00 4.45
9 10 1.338769 CCTAACTTTACACGCTGCCCT 60.339 52.381 0.00 0.00 0.00 5.19
10 11 1.084289 CCTAACTTTACACGCTGCCC 58.916 55.000 0.00 0.00 0.00 5.36
11 12 0.446616 GCCTAACTTTACACGCTGCC 59.553 55.000 0.00 0.00 0.00 4.85
12 13 0.446616 GGCCTAACTTTACACGCTGC 59.553 55.000 0.00 0.00 0.00 5.25
13 14 1.084289 GGGCCTAACTTTACACGCTG 58.916 55.000 0.84 0.00 0.00 5.18
14 15 0.688487 TGGGCCTAACTTTACACGCT 59.312 50.000 4.53 0.00 0.00 5.07
15 16 1.084289 CTGGGCCTAACTTTACACGC 58.916 55.000 4.53 0.00 0.00 5.34
16 17 2.754946 TCTGGGCCTAACTTTACACG 57.245 50.000 4.53 0.00 0.00 4.49
17 18 2.747989 GCTTCTGGGCCTAACTTTACAC 59.252 50.000 4.53 0.00 0.00 2.90
18 19 3.067684 GCTTCTGGGCCTAACTTTACA 57.932 47.619 4.53 0.00 0.00 2.41
28 29 6.723464 CACTCTAAAGTAGGCTTCTGGGCC 62.723 54.167 0.00 0.00 42.49 5.80
29 30 2.502130 ACTCTAAAGTAGGCTTCTGGGC 59.498 50.000 0.00 0.00 41.20 5.36
30 31 3.769844 TCACTCTAAAGTAGGCTTCTGGG 59.230 47.826 0.00 0.00 33.25 4.45
31 32 5.407407 TTCACTCTAAAGTAGGCTTCTGG 57.593 43.478 0.00 0.00 33.25 3.86
32 33 4.867608 GCTTCACTCTAAAGTAGGCTTCTG 59.132 45.833 0.00 0.00 33.25 3.02
33 34 4.775253 AGCTTCACTCTAAAGTAGGCTTCT 59.225 41.667 0.00 0.00 33.16 2.85
34 35 5.079689 AGCTTCACTCTAAAGTAGGCTTC 57.920 43.478 0.00 0.00 33.16 3.86
35 36 5.012148 TCAAGCTTCACTCTAAAGTAGGCTT 59.988 40.000 0.00 0.00 40.78 4.35
36 37 4.528596 TCAAGCTTCACTCTAAAGTAGGCT 59.471 41.667 0.00 0.00 36.20 4.58
37 38 4.822026 TCAAGCTTCACTCTAAAGTAGGC 58.178 43.478 0.00 0.00 33.25 3.93
38 39 7.155328 TCTTTCAAGCTTCACTCTAAAGTAGG 58.845 38.462 0.00 0.00 34.21 3.18
39 40 8.770438 ATCTTTCAAGCTTCACTCTAAAGTAG 57.230 34.615 0.00 0.00 34.21 2.57
40 41 8.367911 TGATCTTTCAAGCTTCACTCTAAAGTA 58.632 33.333 0.00 0.00 34.21 2.24
41 42 7.220030 TGATCTTTCAAGCTTCACTCTAAAGT 58.780 34.615 0.00 0.00 34.21 2.66
42 43 7.387397 ACTGATCTTTCAAGCTTCACTCTAAAG 59.613 37.037 0.00 0.80 34.00 1.85
43 44 7.220030 ACTGATCTTTCAAGCTTCACTCTAAA 58.780 34.615 0.00 0.00 0.00 1.85
44 45 6.763355 ACTGATCTTTCAAGCTTCACTCTAA 58.237 36.000 0.00 0.00 0.00 2.10
45 46 6.352016 ACTGATCTTTCAAGCTTCACTCTA 57.648 37.500 0.00 0.00 0.00 2.43
46 47 5.226194 ACTGATCTTTCAAGCTTCACTCT 57.774 39.130 0.00 0.00 0.00 3.24
47 48 4.091220 CGACTGATCTTTCAAGCTTCACTC 59.909 45.833 0.00 0.00 0.00 3.51
48 49 3.993081 CGACTGATCTTTCAAGCTTCACT 59.007 43.478 0.00 0.00 0.00 3.41
49 50 3.424170 GCGACTGATCTTTCAAGCTTCAC 60.424 47.826 0.00 0.00 0.00 3.18
50 51 2.738846 GCGACTGATCTTTCAAGCTTCA 59.261 45.455 0.00 0.00 0.00 3.02
51 52 2.222685 CGCGACTGATCTTTCAAGCTTC 60.223 50.000 0.00 0.00 0.00 3.86
52 53 1.728971 CGCGACTGATCTTTCAAGCTT 59.271 47.619 0.00 0.00 0.00 3.74
53 54 1.354040 CGCGACTGATCTTTCAAGCT 58.646 50.000 0.00 0.00 0.00 3.74
54 55 0.371645 CCGCGACTGATCTTTCAAGC 59.628 55.000 8.23 0.00 0.00 4.01
55 56 0.371645 GCCGCGACTGATCTTTCAAG 59.628 55.000 8.23 0.00 0.00 3.02
56 57 0.037326 AGCCGCGACTGATCTTTCAA 60.037 50.000 8.23 0.00 0.00 2.69
57 58 0.737367 CAGCCGCGACTGATCTTTCA 60.737 55.000 18.32 0.00 40.25 2.69
58 59 1.424493 CCAGCCGCGACTGATCTTTC 61.424 60.000 24.75 0.00 40.25 2.62
59 60 1.448540 CCAGCCGCGACTGATCTTT 60.449 57.895 24.75 0.00 40.25 2.52
60 61 2.185350 CCAGCCGCGACTGATCTT 59.815 61.111 24.75 0.00 40.25 2.40
61 62 3.842923 CCCAGCCGCGACTGATCT 61.843 66.667 24.75 0.00 40.25 2.75
62 63 3.665675 AACCCAGCCGCGACTGATC 62.666 63.158 24.75 0.00 40.25 2.92
63 64 1.895020 TAAACCCAGCCGCGACTGAT 61.895 55.000 24.75 8.70 40.25 2.90
64 65 1.895020 ATAAACCCAGCCGCGACTGA 61.895 55.000 24.75 3.31 40.25 3.41
65 66 0.179094 TATAAACCCAGCCGCGACTG 60.179 55.000 16.16 16.16 37.42 3.51
66 67 0.538118 TTATAAACCCAGCCGCGACT 59.462 50.000 8.23 0.00 0.00 4.18
67 68 1.063027 GTTTATAAACCCAGCCGCGAC 59.937 52.381 16.14 0.00 32.82 5.19
68 69 1.065998 AGTTTATAAACCCAGCCGCGA 60.066 47.619 21.92 0.00 39.71 5.87
69 70 1.375551 AGTTTATAAACCCAGCCGCG 58.624 50.000 21.92 0.00 39.71 6.46
70 71 3.311596 CACTAGTTTATAAACCCAGCCGC 59.688 47.826 21.92 0.00 39.71 6.53
71 72 4.331717 CACACTAGTTTATAAACCCAGCCG 59.668 45.833 21.92 15.91 39.71 5.52
72 73 4.638865 CCACACTAGTTTATAAACCCAGCC 59.361 45.833 21.92 0.00 39.71 4.85
73 74 4.095932 GCCACACTAGTTTATAAACCCAGC 59.904 45.833 21.92 12.84 39.71 4.85
74 75 5.354234 CAGCCACACTAGTTTATAAACCCAG 59.646 44.000 21.92 20.26 39.71 4.45
75 76 5.250200 CAGCCACACTAGTTTATAAACCCA 58.750 41.667 21.92 11.30 39.71 4.51
76 77 4.095932 GCAGCCACACTAGTTTATAAACCC 59.904 45.833 21.92 1.56 39.71 4.11
77 78 4.095932 GGCAGCCACACTAGTTTATAAACC 59.904 45.833 21.92 6.76 39.71 3.27
78 79 4.095932 GGGCAGCCACACTAGTTTATAAAC 59.904 45.833 18.77 18.77 39.17 2.01
79 80 4.018779 AGGGCAGCCACACTAGTTTATAAA 60.019 41.667 15.19 0.00 0.00 1.40
80 81 3.521937 AGGGCAGCCACACTAGTTTATAA 59.478 43.478 15.19 0.00 0.00 0.98
81 82 3.112263 AGGGCAGCCACACTAGTTTATA 58.888 45.455 15.19 0.00 0.00 0.98
82 83 1.916181 AGGGCAGCCACACTAGTTTAT 59.084 47.619 15.19 0.00 0.00 1.40
83 84 1.358152 AGGGCAGCCACACTAGTTTA 58.642 50.000 15.19 0.00 0.00 2.01
84 85 0.478507 AAGGGCAGCCACACTAGTTT 59.521 50.000 15.19 0.00 0.00 2.66
85 86 0.036875 GAAGGGCAGCCACACTAGTT 59.963 55.000 15.19 0.00 0.00 2.24
86 87 1.679898 GAAGGGCAGCCACACTAGT 59.320 57.895 15.19 0.00 0.00 2.57
87 88 1.448540 CGAAGGGCAGCCACACTAG 60.449 63.158 15.19 0.00 0.00 2.57
88 89 2.662596 CGAAGGGCAGCCACACTA 59.337 61.111 15.19 0.00 0.00 2.74
106 107 1.601419 TTTAGTCCCACCTCGCCGAG 61.601 60.000 7.25 7.25 0.00 4.63
107 108 1.607178 TTTAGTCCCACCTCGCCGA 60.607 57.895 0.00 0.00 0.00 5.54
108 109 1.447314 GTTTAGTCCCACCTCGCCG 60.447 63.158 0.00 0.00 0.00 6.46
109 110 0.672711 GTGTTTAGTCCCACCTCGCC 60.673 60.000 0.00 0.00 0.00 5.54
110 111 0.320697 AGTGTTTAGTCCCACCTCGC 59.679 55.000 0.00 0.00 31.88 5.03
111 112 1.343465 ACAGTGTTTAGTCCCACCTCG 59.657 52.381 0.00 0.00 31.88 4.63
112 113 2.767505 CACAGTGTTTAGTCCCACCTC 58.232 52.381 0.00 0.00 31.88 3.85
113 114 1.202770 GCACAGTGTTTAGTCCCACCT 60.203 52.381 1.61 0.00 31.88 4.00
114 115 1.235724 GCACAGTGTTTAGTCCCACC 58.764 55.000 1.61 0.00 31.88 4.61
115 116 1.602377 GTGCACAGTGTTTAGTCCCAC 59.398 52.381 13.17 0.00 0.00 4.61
116 117 1.476110 GGTGCACAGTGTTTAGTCCCA 60.476 52.381 20.43 0.00 0.00 4.37
117 118 1.235724 GGTGCACAGTGTTTAGTCCC 58.764 55.000 20.43 0.00 0.00 4.46
118 119 0.865769 CGGTGCACAGTGTTTAGTCC 59.134 55.000 20.43 0.00 0.00 3.85
119 120 0.234884 GCGGTGCACAGTGTTTAGTC 59.765 55.000 20.43 0.00 0.00 2.59
120 121 1.495584 CGCGGTGCACAGTGTTTAGT 61.496 55.000 20.43 0.00 0.00 2.24
121 122 1.204062 CGCGGTGCACAGTGTTTAG 59.796 57.895 20.43 0.27 0.00 1.85
122 123 2.248135 CCGCGGTGCACAGTGTTTA 61.248 57.895 25.29 0.00 0.00 2.01
123 124 3.582120 CCGCGGTGCACAGTGTTT 61.582 61.111 25.29 0.00 0.00 2.83
140 141 4.586235 AGGGTGTGCACTGCCACC 62.586 66.667 23.48 23.48 43.79 4.61
141 142 0.821711 TAAAGGGTGTGCACTGCCAC 60.822 55.000 24.88 13.41 36.28 5.01
142 143 0.537143 CTAAAGGGTGTGCACTGCCA 60.537 55.000 24.88 9.75 0.00 4.92
143 144 0.537371 ACTAAAGGGTGTGCACTGCC 60.537 55.000 19.41 18.93 0.00 4.85
144 145 1.804748 GTACTAAAGGGTGTGCACTGC 59.195 52.381 19.41 10.77 0.00 4.40
145 146 2.423577 GGTACTAAAGGGTGTGCACTG 58.576 52.381 19.41 0.91 0.00 3.66
146 147 1.001633 CGGTACTAAAGGGTGTGCACT 59.998 52.381 19.41 0.00 0.00 4.40
147 148 1.435577 CGGTACTAAAGGGTGTGCAC 58.564 55.000 10.75 10.75 0.00 4.57
148 149 0.322322 CCGGTACTAAAGGGTGTGCA 59.678 55.000 0.00 0.00 0.00 4.57
149 150 0.322648 ACCGGTACTAAAGGGTGTGC 59.677 55.000 4.49 0.00 0.00 4.57
150 151 2.419667 CAACCGGTACTAAAGGGTGTG 58.580 52.381 8.00 0.00 37.92 3.82
151 152 1.348696 CCAACCGGTACTAAAGGGTGT 59.651 52.381 8.00 0.00 40.97 4.16
152 153 1.348696 ACCAACCGGTACTAAAGGGTG 59.651 52.381 8.00 0.00 46.71 4.61
153 154 1.348696 CACCAACCGGTACTAAAGGGT 59.651 52.381 8.00 4.39 46.94 4.34
154 155 1.339342 CCACCAACCGGTACTAAAGGG 60.339 57.143 8.00 3.70 46.94 3.95
155 156 1.947212 GCCACCAACCGGTACTAAAGG 60.947 57.143 8.00 6.95 46.94 3.11
156 157 1.002773 AGCCACCAACCGGTACTAAAG 59.997 52.381 8.00 0.00 46.94 1.85
157 158 1.002315 GAGCCACCAACCGGTACTAAA 59.998 52.381 8.00 0.00 46.94 1.85
158 159 0.609662 GAGCCACCAACCGGTACTAA 59.390 55.000 8.00 0.00 46.94 2.24
159 160 1.259840 GGAGCCACCAACCGGTACTA 61.260 60.000 8.00 0.00 46.94 1.82
160 161 2.590114 GGAGCCACCAACCGGTACT 61.590 63.158 8.00 0.00 46.94 2.73
161 162 2.046604 GGAGCCACCAACCGGTAC 60.047 66.667 8.00 0.00 46.94 3.34
162 163 2.527123 TGGAGCCACCAACCGGTA 60.527 61.111 8.00 0.00 46.94 4.02
170 171 1.259840 TAGTACCGGTTGGAGCCACC 61.260 60.000 15.04 0.00 39.21 4.61
171 172 0.609662 TTAGTACCGGTTGGAGCCAC 59.390 55.000 15.04 1.99 39.21 5.01
172 173 1.208535 CATTAGTACCGGTTGGAGCCA 59.791 52.381 15.04 0.00 39.21 4.75
173 174 1.474498 CCATTAGTACCGGTTGGAGCC 60.474 57.143 15.04 0.00 39.21 4.70
174 175 1.474498 CCCATTAGTACCGGTTGGAGC 60.474 57.143 21.50 4.54 39.21 4.70
175 176 1.140252 CCCCATTAGTACCGGTTGGAG 59.860 57.143 21.50 6.60 39.21 3.86
176 177 1.205966 CCCCATTAGTACCGGTTGGA 58.794 55.000 21.50 0.00 39.21 3.53
177 178 0.181824 CCCCCATTAGTACCGGTTGG 59.818 60.000 15.04 14.60 42.84 3.77
178 179 3.792712 CCCCCATTAGTACCGGTTG 57.207 57.895 15.04 3.82 0.00 3.77
195 196 4.435970 CCGGTACCAAAGGCCCCC 62.436 72.222 13.54 0.00 0.00 5.40
196 197 3.214190 AACCGGTACCAAAGGCCCC 62.214 63.158 8.00 0.00 0.00 5.80
197 198 1.974875 CAACCGGTACCAAAGGCCC 60.975 63.158 8.00 0.00 0.00 5.80
198 199 1.974875 CCAACCGGTACCAAAGGCC 60.975 63.158 8.00 0.00 0.00 5.19
199 200 0.958876 CTCCAACCGGTACCAAAGGC 60.959 60.000 8.00 0.00 0.00 4.35
200 201 0.958876 GCTCCAACCGGTACCAAAGG 60.959 60.000 8.00 7.78 0.00 3.11
201 202 0.958876 GGCTCCAACCGGTACCAAAG 60.959 60.000 8.00 2.56 0.00 2.77
202 203 1.073548 GGCTCCAACCGGTACCAAA 59.926 57.895 8.00 0.00 0.00 3.28
203 204 1.706995 TTGGCTCCAACCGGTACCAA 61.707 55.000 8.00 14.29 42.39 3.67
204 205 2.119484 CTTGGCTCCAACCGGTACCA 62.119 60.000 8.00 8.40 36.81 3.25
205 206 1.376812 CTTGGCTCCAACCGGTACC 60.377 63.158 8.00 0.16 0.00 3.34
206 207 0.035739 TTCTTGGCTCCAACCGGTAC 59.964 55.000 8.00 0.00 0.00 3.34
207 208 0.035739 GTTCTTGGCTCCAACCGGTA 59.964 55.000 8.00 0.00 0.00 4.02
208 209 1.228154 GTTCTTGGCTCCAACCGGT 60.228 57.895 0.00 0.00 0.00 5.28
209 210 1.971695 GGTTCTTGGCTCCAACCGG 60.972 63.158 0.00 0.00 30.63 5.28
210 211 3.668386 GGTTCTTGGCTCCAACCG 58.332 61.111 0.00 0.00 30.63 4.44
211 212 1.971695 CCGGTTCTTGGCTCCAACC 60.972 63.158 0.00 0.00 36.91 3.77
212 213 0.035739 TACCGGTTCTTGGCTCCAAC 59.964 55.000 15.04 0.00 0.00 3.77
213 214 0.035739 GTACCGGTTCTTGGCTCCAA 59.964 55.000 15.04 0.95 0.00 3.53
214 215 1.675219 GTACCGGTTCTTGGCTCCA 59.325 57.895 15.04 0.00 0.00 3.86
215 216 1.447314 CGTACCGGTTCTTGGCTCC 60.447 63.158 15.04 0.00 0.00 4.70
216 217 0.037975 TTCGTACCGGTTCTTGGCTC 60.038 55.000 15.04 0.00 0.00 4.70
217 218 0.611714 ATTCGTACCGGTTCTTGGCT 59.388 50.000 15.04 0.00 0.00 4.75
218 219 0.725117 CATTCGTACCGGTTCTTGGC 59.275 55.000 15.04 0.00 0.00 4.52
219 220 1.365699 CCATTCGTACCGGTTCTTGG 58.634 55.000 15.04 11.18 0.00 3.61
220 221 1.365699 CCCATTCGTACCGGTTCTTG 58.634 55.000 15.04 5.56 0.00 3.02
221 222 0.251073 CCCCATTCGTACCGGTTCTT 59.749 55.000 15.04 0.00 0.00 2.52
222 223 1.619807 CCCCCATTCGTACCGGTTCT 61.620 60.000 15.04 0.00 0.00 3.01
223 224 1.153309 CCCCCATTCGTACCGGTTC 60.153 63.158 15.04 6.83 0.00 3.62
224 225 2.992164 CCCCCATTCGTACCGGTT 59.008 61.111 15.04 0.00 0.00 4.44
241 242 2.718487 AAACGGTACCAAAGGCCCCC 62.718 60.000 13.54 0.00 0.00 5.40
242 243 1.228644 AAACGGTACCAAAGGCCCC 60.229 57.895 13.54 0.00 0.00 5.80
243 244 0.824595 ACAAACGGTACCAAAGGCCC 60.825 55.000 13.54 0.00 0.00 5.80
244 245 1.894881 TACAAACGGTACCAAAGGCC 58.105 50.000 13.54 0.00 0.00 5.19
245 246 3.986442 TTTACAAACGGTACCAAAGGC 57.014 42.857 13.54 0.00 0.00 4.35
246 247 5.239963 AGTGATTTACAAACGGTACCAAAGG 59.760 40.000 13.54 0.70 0.00 3.11
247 248 6.308371 AGTGATTTACAAACGGTACCAAAG 57.692 37.500 13.54 0.00 0.00 2.77
248 249 7.982761 ATAGTGATTTACAAACGGTACCAAA 57.017 32.000 13.54 3.95 0.00 3.28
249 250 8.313292 AGTATAGTGATTTACAAACGGTACCAA 58.687 33.333 13.54 0.00 0.00 3.67
250 251 7.760794 CAGTATAGTGATTTACAAACGGTACCA 59.239 37.037 13.54 0.00 0.00 3.25
251 252 7.761249 ACAGTATAGTGATTTACAAACGGTACC 59.239 37.037 14.61 0.16 0.00 3.34
252 253 8.693542 ACAGTATAGTGATTTACAAACGGTAC 57.306 34.615 14.61 0.00 0.00 3.34
253 254 9.787532 GTACAGTATAGTGATTTACAAACGGTA 57.212 33.333 14.61 0.00 0.00 4.02
403 404 0.531311 GTCGGTCCGGTCAGTTTTGT 60.531 55.000 12.29 0.00 0.00 2.83
504 545 1.401670 CGTCTCCTTCCACTGAACGAG 60.402 57.143 0.00 0.00 35.92 4.18
558 599 5.555017 GGCATAGCATCTTGAGATTTCCTA 58.445 41.667 0.00 0.00 31.21 2.94
596 637 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
674 716 4.244862 CATCTTTGGTTGGGCATGTAAAC 58.755 43.478 0.00 0.00 0.00 2.01
693 735 3.110447 CTCTTTCCTAGAGGCAGCATC 57.890 52.381 0.00 0.00 45.61 3.91
702 744 4.337145 GTCAGGTGTCTCTCTTTCCTAGA 58.663 47.826 0.00 0.00 0.00 2.43
703 745 3.445805 GGTCAGGTGTCTCTCTTTCCTAG 59.554 52.174 0.00 0.00 0.00 3.02
704 746 3.076182 AGGTCAGGTGTCTCTCTTTCCTA 59.924 47.826 0.00 0.00 0.00 2.94
705 747 2.158234 AGGTCAGGTGTCTCTCTTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
706 748 2.252714 AGGTCAGGTGTCTCTCTTTCC 58.747 52.381 0.00 0.00 0.00 3.13
707 749 3.119280 GCTAGGTCAGGTGTCTCTCTTTC 60.119 52.174 0.00 0.00 0.00 2.62
708 750 2.829120 GCTAGGTCAGGTGTCTCTCTTT 59.171 50.000 0.00 0.00 0.00 2.52
709 751 2.042433 AGCTAGGTCAGGTGTCTCTCTT 59.958 50.000 0.00 0.00 32.41 2.85
710 752 1.638589 AGCTAGGTCAGGTGTCTCTCT 59.361 52.381 0.00 0.00 32.41 3.10
711 753 2.137810 AGCTAGGTCAGGTGTCTCTC 57.862 55.000 0.00 0.00 32.41 3.20
712 754 2.685522 GCTAGCTAGGTCAGGTGTCTCT 60.686 54.545 22.10 0.00 36.15 3.10
713 755 1.679153 GCTAGCTAGGTCAGGTGTCTC 59.321 57.143 22.10 0.00 36.15 3.36
714 756 1.686741 GGCTAGCTAGGTCAGGTGTCT 60.687 57.143 22.10 0.00 36.15 3.41
715 757 0.747852 GGCTAGCTAGGTCAGGTGTC 59.252 60.000 22.10 2.00 36.15 3.67
716 758 0.688087 GGGCTAGCTAGGTCAGGTGT 60.688 60.000 22.10 0.00 36.15 4.16
717 759 0.687757 TGGGCTAGCTAGGTCAGGTG 60.688 60.000 22.10 0.00 36.15 4.00
718 760 0.266152 ATGGGCTAGCTAGGTCAGGT 59.734 55.000 22.10 0.00 38.84 4.00
719 761 2.310779 TATGGGCTAGCTAGGTCAGG 57.689 55.000 22.10 0.00 0.00 3.86
720 762 3.643792 AGTTTATGGGCTAGCTAGGTCAG 59.356 47.826 22.10 0.00 0.00 3.51
721 763 3.654273 AGTTTATGGGCTAGCTAGGTCA 58.346 45.455 22.10 6.24 0.00 4.02
722 764 4.101119 TGAAGTTTATGGGCTAGCTAGGTC 59.899 45.833 22.10 6.36 0.00 3.85
723 765 4.037927 TGAAGTTTATGGGCTAGCTAGGT 58.962 43.478 22.10 0.00 0.00 3.08
724 766 4.689612 TGAAGTTTATGGGCTAGCTAGG 57.310 45.455 22.10 4.48 0.00 3.02
725 767 7.573968 ATTTTGAAGTTTATGGGCTAGCTAG 57.426 36.000 16.84 16.84 0.00 3.42
726 768 7.954666 AATTTTGAAGTTTATGGGCTAGCTA 57.045 32.000 15.72 4.59 0.00 3.32
727 769 6.857437 AATTTTGAAGTTTATGGGCTAGCT 57.143 33.333 15.72 0.00 0.00 3.32
728 770 7.996385 TCTAATTTTGAAGTTTATGGGCTAGC 58.004 34.615 6.04 6.04 0.00 3.42
729 771 8.624776 CCTCTAATTTTGAAGTTTATGGGCTAG 58.375 37.037 0.00 0.00 0.00 3.42
730 772 7.068226 GCCTCTAATTTTGAAGTTTATGGGCTA 59.932 37.037 0.00 0.00 0.00 3.93
731 773 6.127338 GCCTCTAATTTTGAAGTTTATGGGCT 60.127 38.462 0.00 0.00 0.00 5.19
732 774 6.042777 GCCTCTAATTTTGAAGTTTATGGGC 58.957 40.000 0.00 0.00 0.00 5.36
733 775 7.122650 TGAGCCTCTAATTTTGAAGTTTATGGG 59.877 37.037 0.00 0.00 0.00 4.00
734 776 8.055279 TGAGCCTCTAATTTTGAAGTTTATGG 57.945 34.615 0.00 0.00 0.00 2.74
735 777 9.565213 CTTGAGCCTCTAATTTTGAAGTTTATG 57.435 33.333 0.00 0.00 0.00 1.90
736 778 8.743714 CCTTGAGCCTCTAATTTTGAAGTTTAT 58.256 33.333 0.00 0.00 0.00 1.40
737 779 7.724061 ACCTTGAGCCTCTAATTTTGAAGTTTA 59.276 33.333 0.00 0.00 0.00 2.01
738 780 6.551227 ACCTTGAGCCTCTAATTTTGAAGTTT 59.449 34.615 0.00 0.00 0.00 2.66
739 781 6.071320 ACCTTGAGCCTCTAATTTTGAAGTT 58.929 36.000 0.00 0.00 0.00 2.66
740 782 5.635120 ACCTTGAGCCTCTAATTTTGAAGT 58.365 37.500 0.00 0.00 0.00 3.01
741 783 6.581171 AACCTTGAGCCTCTAATTTTGAAG 57.419 37.500 0.00 0.00 0.00 3.02
742 784 6.976934 AAACCTTGAGCCTCTAATTTTGAA 57.023 33.333 0.00 0.00 0.00 2.69
743 785 8.357402 GTTTAAACCTTGAGCCTCTAATTTTGA 58.643 33.333 7.12 0.00 0.00 2.69
744 786 8.141268 TGTTTAAACCTTGAGCCTCTAATTTTG 58.859 33.333 15.59 0.00 0.00 2.44
745 787 8.245195 TGTTTAAACCTTGAGCCTCTAATTTT 57.755 30.769 15.59 0.00 0.00 1.82
746 788 7.833285 TGTTTAAACCTTGAGCCTCTAATTT 57.167 32.000 15.59 0.00 0.00 1.82
747 789 8.422577 AATGTTTAAACCTTGAGCCTCTAATT 57.577 30.769 15.59 1.56 0.00 1.40
748 790 7.890655 AGAATGTTTAAACCTTGAGCCTCTAAT 59.109 33.333 15.59 0.00 0.00 1.73
749 791 7.231467 AGAATGTTTAAACCTTGAGCCTCTAA 58.769 34.615 15.59 0.00 0.00 2.10
750 792 6.779860 AGAATGTTTAAACCTTGAGCCTCTA 58.220 36.000 15.59 0.00 0.00 2.43
751 793 5.635120 AGAATGTTTAAACCTTGAGCCTCT 58.365 37.500 15.59 2.28 0.00 3.69
752 794 5.966742 AGAATGTTTAAACCTTGAGCCTC 57.033 39.130 15.59 0.06 0.00 4.70
753 795 5.416013 GCTAGAATGTTTAAACCTTGAGCCT 59.584 40.000 15.59 7.88 0.00 4.58
754 796 5.183140 TGCTAGAATGTTTAAACCTTGAGCC 59.817 40.000 22.96 13.57 29.12 4.70
755 797 6.072452 ACTGCTAGAATGTTTAAACCTTGAGC 60.072 38.462 21.05 21.05 0.00 4.26
756 798 7.440523 ACTGCTAGAATGTTTAAACCTTGAG 57.559 36.000 15.59 11.59 0.00 3.02
757 799 7.817418 AACTGCTAGAATGTTTAAACCTTGA 57.183 32.000 15.59 0.00 0.00 3.02
758 800 8.755018 CAAAACTGCTAGAATGTTTAAACCTTG 58.245 33.333 15.59 7.78 34.09 3.61
759 801 7.438160 GCAAAACTGCTAGAATGTTTAAACCTT 59.562 33.333 15.59 11.88 34.09 3.50
760 802 6.923508 GCAAAACTGCTAGAATGTTTAAACCT 59.076 34.615 15.59 8.15 34.09 3.50
761 803 6.699642 TGCAAAACTGCTAGAATGTTTAAACC 59.300 34.615 15.59 0.61 34.09 3.27
762 804 7.692908 TGCAAAACTGCTAGAATGTTTAAAC 57.307 32.000 11.54 11.54 34.09 2.01
763 805 8.709386 TTTGCAAAACTGCTAGAATGTTTAAA 57.291 26.923 10.02 0.00 34.09 1.52
764 806 8.709386 TTTTGCAAAACTGCTAGAATGTTTAA 57.291 26.923 20.46 0.00 34.09 1.52
765 807 8.885494 ATTTTGCAAAACTGCTAGAATGTTTA 57.115 26.923 26.05 0.00 34.09 2.01
766 808 7.712205 AGATTTTGCAAAACTGCTAGAATGTTT 59.288 29.630 26.05 5.71 35.71 2.83
767 809 7.212274 AGATTTTGCAAAACTGCTAGAATGTT 58.788 30.769 26.05 6.16 35.49 2.71
768 810 6.752168 AGATTTTGCAAAACTGCTAGAATGT 58.248 32.000 26.05 6.36 35.49 2.71
769 811 7.647907 AAGATTTTGCAAAACTGCTAGAATG 57.352 32.000 26.05 0.00 35.49 2.67
770 812 8.667076 AAAAGATTTTGCAAAACTGCTAGAAT 57.333 26.923 26.05 7.64 35.49 2.40
771 813 8.389603 CAAAAAGATTTTGCAAAACTGCTAGAA 58.610 29.630 26.05 1.60 35.49 2.10
772 814 7.763528 TCAAAAAGATTTTGCAAAACTGCTAGA 59.236 29.630 26.05 15.40 35.49 2.43
773 815 7.908230 TCAAAAAGATTTTGCAAAACTGCTAG 58.092 30.769 26.05 13.56 35.49 3.42
774 816 7.763528 TCTCAAAAAGATTTTGCAAAACTGCTA 59.236 29.630 26.05 3.97 35.49 3.49
775 817 6.594937 TCTCAAAAAGATTTTGCAAAACTGCT 59.405 30.769 26.05 19.36 35.49 4.24
776 818 6.774084 TCTCAAAAAGATTTTGCAAAACTGC 58.226 32.000 26.05 17.59 0.00 4.40
777 819 8.229137 TGTTCTCAAAAAGATTTTGCAAAACTG 58.771 29.630 26.05 15.42 32.82 3.16
778 820 8.229811 GTGTTCTCAAAAAGATTTTGCAAAACT 58.770 29.630 26.05 20.34 32.82 2.66
779 821 8.229811 AGTGTTCTCAAAAAGATTTTGCAAAAC 58.770 29.630 26.05 18.64 32.82 2.43
780 822 8.321650 AGTGTTCTCAAAAAGATTTTGCAAAA 57.678 26.923 25.76 25.76 32.82 2.44
781 823 7.064490 GGAGTGTTCTCAAAAAGATTTTGCAAA 59.936 33.333 8.05 8.05 42.05 3.68
782 824 6.534793 GGAGTGTTCTCAAAAAGATTTTGCAA 59.465 34.615 10.01 0.00 42.05 4.08
783 825 6.042143 GGAGTGTTCTCAAAAAGATTTTGCA 58.958 36.000 10.01 0.00 42.05 4.08
784 826 5.463392 GGGAGTGTTCTCAAAAAGATTTTGC 59.537 40.000 10.01 0.00 42.05 3.68
785 827 5.687285 CGGGAGTGTTCTCAAAAAGATTTTG 59.313 40.000 8.83 8.83 42.05 2.44
786 828 5.359860 ACGGGAGTGTTCTCAAAAAGATTTT 59.640 36.000 0.00 0.00 44.82 1.82
787 829 4.887655 ACGGGAGTGTTCTCAAAAAGATTT 59.112 37.500 0.00 0.00 44.82 2.17
788 830 4.461198 ACGGGAGTGTTCTCAAAAAGATT 58.539 39.130 0.00 0.00 44.82 2.40
789 831 4.086706 ACGGGAGTGTTCTCAAAAAGAT 57.913 40.909 0.00 0.00 44.82 2.40
790 832 3.553828 ACGGGAGTGTTCTCAAAAAGA 57.446 42.857 0.00 0.00 44.82 2.52
791 833 4.377897 ACTACGGGAGTGTTCTCAAAAAG 58.622 43.478 0.00 0.00 46.80 2.27
792 834 4.411256 ACTACGGGAGTGTTCTCAAAAA 57.589 40.909 0.00 0.00 46.80 1.94
793 835 4.411256 AACTACGGGAGTGTTCTCAAAA 57.589 40.909 0.00 0.00 46.80 2.44
794 836 4.374399 GAAACTACGGGAGTGTTCTCAAA 58.626 43.478 0.00 0.00 46.80 2.69
795 837 3.243975 GGAAACTACGGGAGTGTTCTCAA 60.244 47.826 0.00 0.00 46.80 3.02
796 838 2.298163 GGAAACTACGGGAGTGTTCTCA 59.702 50.000 0.00 0.00 46.80 3.27
797 839 2.561858 AGGAAACTACGGGAGTGTTCTC 59.438 50.000 0.00 0.00 46.80 2.87
798 840 2.561858 GAGGAAACTACGGGAGTGTTCT 59.438 50.000 0.00 0.00 46.80 3.01
799 841 2.353505 GGAGGAAACTACGGGAGTGTTC 60.354 54.545 0.00 0.49 46.80 3.18
800 842 1.622312 GGAGGAAACTACGGGAGTGTT 59.378 52.381 0.00 0.00 46.80 3.32
801 843 1.264295 GGAGGAAACTACGGGAGTGT 58.736 55.000 0.00 0.00 46.80 3.55
820 862 7.008628 GTGAAAATCATATTCGCCAAAGAGTTG 59.991 37.037 0.00 0.00 32.49 3.16
821 863 7.029563 GTGAAAATCATATTCGCCAAAGAGTT 58.970 34.615 0.00 0.00 32.49 3.01
822 864 6.555315 GTGAAAATCATATTCGCCAAAGAGT 58.445 36.000 0.00 0.00 32.49 3.24
823 865 5.678483 CGTGAAAATCATATTCGCCAAAGAG 59.322 40.000 0.00 0.00 34.58 2.85
824 866 5.352846 TCGTGAAAATCATATTCGCCAAAGA 59.647 36.000 0.00 0.00 34.58 2.52
825 867 5.568482 TCGTGAAAATCATATTCGCCAAAG 58.432 37.500 0.00 0.00 34.58 2.77
826 868 5.553290 TCGTGAAAATCATATTCGCCAAA 57.447 34.783 0.00 0.00 34.58 3.28
827 869 5.553290 TTCGTGAAAATCATATTCGCCAA 57.447 34.783 0.00 0.00 34.58 4.52
828 870 5.749596 ATTCGTGAAAATCATATTCGCCA 57.250 34.783 0.00 0.00 34.58 5.69
829 871 7.449934 AAAATTCGTGAAAATCATATTCGCC 57.550 32.000 0.00 0.00 34.58 5.54
1024 1074 2.425102 CCAGGTTTTGGGAAGGTTACCA 60.425 50.000 3.51 0.00 43.75 3.25
1025 1075 2.244695 CCAGGTTTTGGGAAGGTTACC 58.755 52.381 0.00 0.00 43.75 2.85
1243 1329 1.337384 CCATGACGATCCCTGTCCCA 61.337 60.000 0.00 0.00 35.46 4.37
2614 2952 6.473455 GCCAACCTTGATTTTAAGATCAATCG 59.527 38.462 18.67 14.62 43.10 3.34
3134 3475 3.516300 TGATGTTACCACAGGATTACCGT 59.484 43.478 0.00 0.00 41.83 4.83
3834 4185 6.785963 ACTCCCTCCGTCCAATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
4045 4419 1.066858 ACTGATCTACCAACAGCACGG 60.067 52.381 0.00 0.00 35.38 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.