Multiple sequence alignment - TraesCS1D01G023700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G023700 chr1D 100.000 5908 0 0 1 5908 10023687 10029594 0.000000e+00 10911.0
1 TraesCS1D01G023700 chr1D 99.894 941 1 0 4968 5908 9887937 9886997 0.000000e+00 1733.0
2 TraesCS1D01G023700 chr1D 98.087 941 18 0 4968 5908 10062566 10063506 0.000000e+00 1639.0
3 TraesCS1D01G023700 chr1D 98.621 145 2 0 5764 5908 9932211 9932067 2.110000e-64 257.0
4 TraesCS1D01G023700 chr1D 93.407 91 6 0 5286 5376 252473230 252473140 1.030000e-27 135.0
5 TraesCS1D01G023700 chr1D 90.196 102 7 3 5282 5381 295954303 295954203 4.800000e-26 130.0
6 TraesCS1D01G023700 chr1A 96.439 2752 84 1 728 3479 11718846 11721583 0.000000e+00 4527.0
7 TraesCS1D01G023700 chr1A 95.104 960 23 12 4029 4966 11721865 11722822 0.000000e+00 1491.0
8 TraesCS1D01G023700 chr1A 77.206 2119 402 54 1469 3533 13082466 13084557 0.000000e+00 1162.0
9 TraesCS1D01G023700 chr1A 93.762 529 30 3 5369 5896 11739730 11740256 0.000000e+00 791.0
10 TraesCS1D01G023700 chr1A 93.380 287 19 0 3513 3799 11721577 11721863 5.470000e-115 425.0
11 TraesCS1D01G023700 chr1A 92.734 289 15 2 442 730 11718264 11718546 4.260000e-111 412.0
12 TraesCS1D01G023700 chr1A 88.439 346 16 2 4968 5289 11739388 11739733 4.290000e-106 396.0
13 TraesCS1D01G023700 chr1A 88.889 189 7 5 1 176 11718025 11718212 2.770000e-53 220.0
14 TraesCS1D01G023700 chr1A 92.632 95 6 1 5286 5380 544367918 544367825 1.030000e-27 135.0
15 TraesCS1D01G023700 chr1B 79.122 1662 315 23 1925 3569 16296744 16295098 0.000000e+00 1118.0
16 TraesCS1D01G023700 chr1B 79.014 1663 315 25 1925 3569 16273625 16271979 0.000000e+00 1107.0
17 TraesCS1D01G023700 chr1B 78.954 1663 316 25 1925 3569 16260925 16259279 0.000000e+00 1101.0
18 TraesCS1D01G023700 chr1B 94.382 89 5 0 5283 5371 482722028 482722116 2.870000e-28 137.0
19 TraesCS1D01G023700 chr1B 97.143 35 1 0 5588 5622 14933896 14933930 6.390000e-05 60.2
20 TraesCS1D01G023700 chr3B 74.202 2411 530 76 1709 4085 419763906 419766258 0.000000e+00 922.0
21 TraesCS1D01G023700 chr3A 75.357 2033 428 61 1709 3715 433997826 433999811 0.000000e+00 911.0
22 TraesCS1D01G023700 chr3D 73.937 2398 537 72 1720 4085 301443483 301441142 0.000000e+00 885.0
23 TraesCS1D01G023700 chrUn 82.897 497 79 4 1925 2421 393577683 393578173 5.430000e-120 442.0
24 TraesCS1D01G023700 chr7D 93.617 141 9 0 5618 5758 264761825 264761685 1.670000e-50 211.0
25 TraesCS1D01G023700 chr7B 92.908 141 10 0 5618 5758 245077528 245077388 7.760000e-49 206.0
26 TraesCS1D01G023700 chr2D 91.608 143 11 1 5613 5755 63708402 63708543 4.670000e-46 196.0
27 TraesCS1D01G023700 chr2D 91.034 145 12 1 5612 5755 152021317 152021461 1.680000e-45 195.0
28 TraesCS1D01G023700 chr4A 91.367 139 11 1 5618 5755 548778575 548778437 7.820000e-44 189.0
29 TraesCS1D01G023700 chr7A 90.780 141 11 2 5618 5758 288934401 288934263 2.810000e-43 187.0
30 TraesCS1D01G023700 chr7A 95.402 87 4 0 5285 5371 126927315 126927401 7.980000e-29 139.0
31 TraesCS1D01G023700 chr2A 95.455 88 4 0 5283 5370 771514879 771514792 2.220000e-29 141.0
32 TraesCS1D01G023700 chr5A 93.478 92 6 0 5286 5377 64382189 64382098 2.870000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G023700 chr1D 10023687 10029594 5907 False 10911.0 10911 100.0000 1 5908 1 chr1D.!!$F1 5907
1 TraesCS1D01G023700 chr1D 9886997 9887937 940 True 1733.0 1733 99.8940 4968 5908 1 chr1D.!!$R1 940
2 TraesCS1D01G023700 chr1D 10062566 10063506 940 False 1639.0 1639 98.0870 4968 5908 1 chr1D.!!$F2 940
3 TraesCS1D01G023700 chr1A 11718025 11722822 4797 False 1415.0 4527 93.3092 1 4966 5 chr1A.!!$F2 4965
4 TraesCS1D01G023700 chr1A 13082466 13084557 2091 False 1162.0 1162 77.2060 1469 3533 1 chr1A.!!$F1 2064
5 TraesCS1D01G023700 chr1A 11739388 11740256 868 False 593.5 791 91.1005 4968 5896 2 chr1A.!!$F3 928
6 TraesCS1D01G023700 chr1B 16295098 16296744 1646 True 1118.0 1118 79.1220 1925 3569 1 chr1B.!!$R3 1644
7 TraesCS1D01G023700 chr1B 16271979 16273625 1646 True 1107.0 1107 79.0140 1925 3569 1 chr1B.!!$R2 1644
8 TraesCS1D01G023700 chr1B 16259279 16260925 1646 True 1101.0 1101 78.9540 1925 3569 1 chr1B.!!$R1 1644
9 TraesCS1D01G023700 chr3B 419763906 419766258 2352 False 922.0 922 74.2020 1709 4085 1 chr3B.!!$F1 2376
10 TraesCS1D01G023700 chr3A 433997826 433999811 1985 False 911.0 911 75.3570 1709 3715 1 chr3A.!!$F1 2006
11 TraesCS1D01G023700 chr3D 301441142 301443483 2341 True 885.0 885 73.9370 1720 4085 1 chr3D.!!$R1 2365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 350 0.033991 TCCCTCTCCAACTCTCTCCG 60.034 60.0 0.00 0.0 0.00 4.63 F
421 465 0.101399 CTCTGCTTCCTGTACGCGAT 59.899 55.0 15.93 0.0 0.00 4.58 F
422 466 0.530744 TCTGCTTCCTGTACGCGATT 59.469 50.0 15.93 0.0 0.00 3.34 F
503 547 0.955428 TGTCGTGGCCTTGATCTTGC 60.955 55.0 3.32 0.0 0.00 4.01 F
622 666 1.800805 ATTGACAGACGAGCCTTGTG 58.199 50.0 0.00 0.0 0.00 3.33 F
2159 2532 1.813513 AGGAGTGAAGCGTGAATTGG 58.186 50.0 0.00 0.0 0.00 3.16 F
3192 3579 0.107703 CAAGGTATGAAGCGCCTGGA 60.108 55.0 2.29 0.0 32.16 3.86 F
4002 4404 0.513820 GAATCGTTTGGTTTCGCGGA 59.486 50.0 6.13 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 2126 1.322442 GTCCAATAATCCCAGCAGCC 58.678 55.000 0.0 0.0 0.00 4.85 R
2159 2532 2.961741 TCTGATAGACCTGCTCACCATC 59.038 50.000 0.0 0.0 0.00 3.51 R
2408 2781 3.066203 GTCCATTTCTTTGTGACGTGGTT 59.934 43.478 0.0 0.0 33.54 3.67 R
2453 2826 1.531578 GACGAACCCTCTTTGACAAGC 59.468 52.381 0.0 0.0 0.00 4.01 R
2554 2927 2.979813 GTTAATGCTCACGCCAAACTTG 59.020 45.455 0.0 0.0 34.43 3.16 R
4108 4510 0.107703 TGCGGATGTCCAAGACCATC 60.108 55.000 0.0 0.0 35.14 3.51 R
4109 4511 0.327924 TTGCGGATGTCCAAGACCAT 59.672 50.000 0.0 0.0 35.14 3.55 R
4966 5390 2.631160 TTGCCGAGGAAGTCTTTTGA 57.369 45.000 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.181967 CGCAGCGCACTACTCACC 61.182 66.667 11.47 0.00 0.00 4.02
133 146 1.910580 ATCCATGGACCCACGACACC 61.911 60.000 18.99 0.00 0.00 4.16
195 239 1.074471 TTCTAGCCTAGCCAGGGGG 60.074 63.158 0.00 0.00 42.88 5.40
197 241 1.074471 CTAGCCTAGCCAGGGGGAA 60.074 63.158 0.00 0.00 42.88 3.97
199 243 2.621672 TAGCCTAGCCAGGGGGAAGG 62.622 65.000 0.00 0.00 42.88 3.46
201 245 1.307866 CCTAGCCAGGGGGAAGGAA 60.308 63.158 0.00 0.00 39.88 3.36
202 246 1.348775 CCTAGCCAGGGGGAAGGAAG 61.349 65.000 0.00 0.00 39.88 3.46
203 247 1.988982 CTAGCCAGGGGGAAGGAAGC 61.989 65.000 0.00 0.00 35.59 3.86
204 248 4.803908 GCCAGGGGGAAGGAAGCG 62.804 72.222 0.00 0.00 35.59 4.68
205 249 3.009115 CCAGGGGGAAGGAAGCGA 61.009 66.667 0.00 0.00 35.59 4.93
206 250 2.586792 CAGGGGGAAGGAAGCGAG 59.413 66.667 0.00 0.00 0.00 5.03
207 251 1.990060 CAGGGGGAAGGAAGCGAGA 60.990 63.158 0.00 0.00 0.00 4.04
208 252 1.687493 AGGGGGAAGGAAGCGAGAG 60.687 63.158 0.00 0.00 0.00 3.20
220 264 2.202797 CGAGAGCATCCACCACCG 60.203 66.667 0.00 0.00 33.66 4.94
221 265 2.710902 CGAGAGCATCCACCACCGA 61.711 63.158 0.00 0.00 33.66 4.69
222 266 1.142748 GAGAGCATCCACCACCGAG 59.857 63.158 0.00 0.00 33.66 4.63
223 267 2.512515 GAGCATCCACCACCGAGC 60.513 66.667 0.00 0.00 0.00 5.03
224 268 4.457496 AGCATCCACCACCGAGCG 62.457 66.667 0.00 0.00 0.00 5.03
225 269 4.451150 GCATCCACCACCGAGCGA 62.451 66.667 0.00 0.00 0.00 4.93
226 270 2.202797 CATCCACCACCGAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
227 271 3.461773 ATCCACCACCGAGCGAGG 61.462 66.667 0.00 0.00 37.30 4.63
263 307 2.513897 GCTGGGCCATCGTGGTAC 60.514 66.667 6.72 0.00 40.46 3.34
264 308 2.202878 CTGGGCCATCGTGGTACG 60.203 66.667 6.72 0.00 44.19 3.67
265 309 3.733344 CTGGGCCATCGTGGTACGG 62.733 68.421 6.72 0.00 42.81 4.02
288 332 3.934962 GGATCTGAGCGCCCCCTC 61.935 72.222 2.29 0.00 0.00 4.30
289 333 3.934962 GATCTGAGCGCCCCCTCC 61.935 72.222 2.29 0.00 0.00 4.30
298 342 3.412408 GCCCCCTCCCTCTCCAAC 61.412 72.222 0.00 0.00 0.00 3.77
299 343 2.456840 CCCCCTCCCTCTCCAACT 59.543 66.667 0.00 0.00 0.00 3.16
300 344 1.690985 CCCCCTCCCTCTCCAACTC 60.691 68.421 0.00 0.00 0.00 3.01
301 345 1.394151 CCCCTCCCTCTCCAACTCT 59.606 63.158 0.00 0.00 0.00 3.24
302 346 0.689412 CCCCTCCCTCTCCAACTCTC 60.689 65.000 0.00 0.00 0.00 3.20
303 347 0.338120 CCCTCCCTCTCCAACTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
304 348 1.687996 CCCTCCCTCTCCAACTCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
305 349 1.687996 CCTCCCTCTCCAACTCTCTCC 60.688 61.905 0.00 0.00 0.00 3.71
306 350 0.033991 TCCCTCTCCAACTCTCTCCG 60.034 60.000 0.00 0.00 0.00 4.63
307 351 1.671901 CCCTCTCCAACTCTCTCCGC 61.672 65.000 0.00 0.00 0.00 5.54
308 352 1.431440 CTCTCCAACTCTCTCCGCG 59.569 63.158 0.00 0.00 0.00 6.46
309 353 2.202676 CTCCAACTCTCTCCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
310 354 4.116328 TCCAACTCTCTCCGCGCG 62.116 66.667 25.67 25.67 0.00 6.86
324 368 4.421479 CGCGCGTCCTCCAAGAGT 62.421 66.667 24.19 0.00 0.00 3.24
325 369 2.882876 GCGCGTCCTCCAAGAGTA 59.117 61.111 8.43 0.00 0.00 2.59
326 370 1.437986 GCGCGTCCTCCAAGAGTAT 59.562 57.895 8.43 0.00 0.00 2.12
327 371 0.666913 GCGCGTCCTCCAAGAGTATA 59.333 55.000 8.43 0.00 0.00 1.47
328 372 1.269998 GCGCGTCCTCCAAGAGTATAT 59.730 52.381 8.43 0.00 0.00 0.86
329 373 2.486982 GCGCGTCCTCCAAGAGTATATA 59.513 50.000 8.43 0.00 0.00 0.86
330 374 3.128938 GCGCGTCCTCCAAGAGTATATAT 59.871 47.826 8.43 0.00 0.00 0.86
331 375 4.380655 GCGCGTCCTCCAAGAGTATATATT 60.381 45.833 8.43 0.00 0.00 1.28
332 376 5.333513 CGCGTCCTCCAAGAGTATATATTC 58.666 45.833 0.00 0.00 0.00 1.75
333 377 5.652518 GCGTCCTCCAAGAGTATATATTCC 58.347 45.833 1.84 0.00 0.00 3.01
334 378 5.394333 GCGTCCTCCAAGAGTATATATTCCC 60.394 48.000 1.84 0.00 0.00 3.97
335 379 5.127356 CGTCCTCCAAGAGTATATATTCCCC 59.873 48.000 1.84 0.00 0.00 4.81
336 380 6.265304 GTCCTCCAAGAGTATATATTCCCCT 58.735 44.000 1.84 0.00 0.00 4.79
337 381 6.381707 GTCCTCCAAGAGTATATATTCCCCTC 59.618 46.154 1.84 0.00 0.00 4.30
338 382 5.663556 CCTCCAAGAGTATATATTCCCCTCC 59.336 48.000 1.84 0.00 0.00 4.30
339 383 6.500490 TCCAAGAGTATATATTCCCCTCCT 57.500 41.667 1.84 0.00 0.00 3.69
340 384 6.503944 TCCAAGAGTATATATTCCCCTCCTC 58.496 44.000 1.84 0.00 0.00 3.71
341 385 6.280649 TCCAAGAGTATATATTCCCCTCCTCT 59.719 42.308 1.84 0.00 0.00 3.69
342 386 6.382570 CCAAGAGTATATATTCCCCTCCTCTG 59.617 46.154 1.84 0.00 0.00 3.35
343 387 5.524535 AGAGTATATATTCCCCTCCTCTGC 58.475 45.833 1.84 0.00 0.00 4.26
344 388 4.625963 AGTATATATTCCCCTCCTCTGCC 58.374 47.826 0.00 0.00 0.00 4.85
345 389 2.344093 TATATTCCCCTCCTCTGCCC 57.656 55.000 0.00 0.00 0.00 5.36
346 390 0.575333 ATATTCCCCTCCTCTGCCCT 59.425 55.000 0.00 0.00 0.00 5.19
347 391 0.400525 TATTCCCCTCCTCTGCCCTG 60.401 60.000 0.00 0.00 0.00 4.45
352 396 3.478274 CTCCTCTGCCCTGCCCTC 61.478 72.222 0.00 0.00 0.00 4.30
353 397 4.337304 TCCTCTGCCCTGCCCTCA 62.337 66.667 0.00 0.00 0.00 3.86
354 398 3.333219 CCTCTGCCCTGCCCTCAA 61.333 66.667 0.00 0.00 0.00 3.02
355 399 2.687610 CCTCTGCCCTGCCCTCAAT 61.688 63.158 0.00 0.00 0.00 2.57
356 400 1.153005 CTCTGCCCTGCCCTCAATC 60.153 63.158 0.00 0.00 0.00 2.67
357 401 2.123982 CTGCCCTGCCCTCAATCC 60.124 66.667 0.00 0.00 0.00 3.01
358 402 3.728292 CTGCCCTGCCCTCAATCCC 62.728 68.421 0.00 0.00 0.00 3.85
359 403 4.529731 GCCCTGCCCTCAATCCCC 62.530 72.222 0.00 0.00 0.00 4.81
360 404 3.023116 CCCTGCCCTCAATCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
361 405 2.276740 CCTGCCCTCAATCCCCAC 59.723 66.667 0.00 0.00 0.00 4.61
362 406 2.124570 CTGCCCTCAATCCCCACG 60.125 66.667 0.00 0.00 0.00 4.94
363 407 4.424711 TGCCCTCAATCCCCACGC 62.425 66.667 0.00 0.00 0.00 5.34
364 408 4.424711 GCCCTCAATCCCCACGCA 62.425 66.667 0.00 0.00 0.00 5.24
365 409 2.597340 CCCTCAATCCCCACGCAT 59.403 61.111 0.00 0.00 0.00 4.73
366 410 1.825191 CCCTCAATCCCCACGCATG 60.825 63.158 0.00 0.00 0.00 4.06
367 411 1.077501 CCTCAATCCCCACGCATGT 60.078 57.895 0.00 0.00 0.00 3.21
368 412 0.180171 CCTCAATCCCCACGCATGTA 59.820 55.000 0.00 0.00 0.00 2.29
369 413 1.202806 CCTCAATCCCCACGCATGTAT 60.203 52.381 0.00 0.00 0.00 2.29
370 414 1.875514 CTCAATCCCCACGCATGTATG 59.124 52.381 0.00 0.00 0.00 2.39
371 415 1.488393 TCAATCCCCACGCATGTATGA 59.512 47.619 0.00 0.00 0.00 2.15
372 416 2.092699 TCAATCCCCACGCATGTATGAA 60.093 45.455 0.00 0.00 0.00 2.57
373 417 2.687425 CAATCCCCACGCATGTATGAAA 59.313 45.455 0.00 0.00 0.00 2.69
374 418 2.727123 TCCCCACGCATGTATGAAAT 57.273 45.000 0.00 0.00 0.00 2.17
375 419 3.847671 TCCCCACGCATGTATGAAATA 57.152 42.857 0.00 0.00 0.00 1.40
376 420 4.157849 TCCCCACGCATGTATGAAATAA 57.842 40.909 0.00 0.00 0.00 1.40
377 421 4.527944 TCCCCACGCATGTATGAAATAAA 58.472 39.130 0.00 0.00 0.00 1.40
378 422 5.136828 TCCCCACGCATGTATGAAATAAAT 58.863 37.500 0.00 0.00 0.00 1.40
379 423 5.240623 TCCCCACGCATGTATGAAATAAATC 59.759 40.000 0.00 0.00 0.00 2.17
380 424 5.009510 CCCCACGCATGTATGAAATAAATCA 59.990 40.000 0.00 0.00 0.00 2.57
381 425 6.294675 CCCCACGCATGTATGAAATAAATCAT 60.295 38.462 0.00 0.00 42.52 2.45
382 426 6.583427 CCCACGCATGTATGAAATAAATCATG 59.417 38.462 0.00 0.00 40.21 3.07
412 456 8.958060 TTTATGTATATACTCCTCTGCTTCCT 57.042 34.615 13.89 0.00 0.00 3.36
413 457 6.849085 ATGTATATACTCCTCTGCTTCCTG 57.151 41.667 13.89 0.00 0.00 3.86
414 458 5.706447 TGTATATACTCCTCTGCTTCCTGT 58.294 41.667 13.89 0.00 0.00 4.00
415 459 6.849151 TGTATATACTCCTCTGCTTCCTGTA 58.151 40.000 13.89 0.00 0.00 2.74
416 460 6.715718 TGTATATACTCCTCTGCTTCCTGTAC 59.284 42.308 13.89 0.00 0.00 2.90
417 461 1.178276 ACTCCTCTGCTTCCTGTACG 58.822 55.000 0.00 0.00 0.00 3.67
418 462 0.179124 CTCCTCTGCTTCCTGTACGC 60.179 60.000 0.00 0.00 0.00 4.42
419 463 1.517257 CCTCTGCTTCCTGTACGCG 60.517 63.158 3.53 3.53 0.00 6.01
420 464 1.506718 CTCTGCTTCCTGTACGCGA 59.493 57.895 15.93 0.00 0.00 5.87
421 465 0.101399 CTCTGCTTCCTGTACGCGAT 59.899 55.000 15.93 0.00 0.00 4.58
422 466 0.530744 TCTGCTTCCTGTACGCGATT 59.469 50.000 15.93 0.00 0.00 3.34
423 467 1.067142 TCTGCTTCCTGTACGCGATTT 60.067 47.619 15.93 0.00 0.00 2.17
424 468 1.324736 CTGCTTCCTGTACGCGATTTC 59.675 52.381 15.93 0.00 0.00 2.17
425 469 1.337354 TGCTTCCTGTACGCGATTTCA 60.337 47.619 15.93 5.10 0.00 2.69
426 470 1.060698 GCTTCCTGTACGCGATTTCAC 59.939 52.381 15.93 2.72 0.00 3.18
427 471 2.607187 CTTCCTGTACGCGATTTCACT 58.393 47.619 15.93 0.00 0.00 3.41
428 472 2.736144 TCCTGTACGCGATTTCACTT 57.264 45.000 15.93 0.00 0.00 3.16
429 473 3.034721 TCCTGTACGCGATTTCACTTT 57.965 42.857 15.93 0.00 0.00 2.66
430 474 3.395639 TCCTGTACGCGATTTCACTTTT 58.604 40.909 15.93 0.00 0.00 2.27
431 475 3.185594 TCCTGTACGCGATTTCACTTTTG 59.814 43.478 15.93 0.00 0.00 2.44
432 476 3.059188 CCTGTACGCGATTTCACTTTTGT 60.059 43.478 15.93 0.00 0.00 2.83
433 477 4.150980 CCTGTACGCGATTTCACTTTTGTA 59.849 41.667 15.93 0.00 0.00 2.41
434 478 5.333492 CCTGTACGCGATTTCACTTTTGTAA 60.333 40.000 15.93 0.00 0.00 2.41
435 479 6.045698 TGTACGCGATTTCACTTTTGTAAA 57.954 33.333 15.93 0.00 0.00 2.01
436 480 5.902981 TGTACGCGATTTCACTTTTGTAAAC 59.097 36.000 15.93 0.00 0.00 2.01
437 481 4.284485 ACGCGATTTCACTTTTGTAAACC 58.716 39.130 15.93 0.00 0.00 3.27
438 482 3.356658 CGCGATTTCACTTTTGTAAACCG 59.643 43.478 0.00 0.00 0.00 4.44
439 483 4.529446 GCGATTTCACTTTTGTAAACCGA 58.471 39.130 0.00 0.00 0.00 4.69
440 484 5.151389 GCGATTTCACTTTTGTAAACCGAT 58.849 37.500 0.00 0.00 0.00 4.18
441 485 6.308675 GCGATTTCACTTTTGTAAACCGATA 58.691 36.000 0.00 0.00 0.00 2.92
442 486 6.464834 GCGATTTCACTTTTGTAAACCGATAG 59.535 38.462 0.00 0.00 0.00 2.08
465 509 2.378038 TGCAGAGGAAAACAAGTTGCT 58.622 42.857 1.81 0.00 0.00 3.91
487 531 3.472652 TGTGTGGGTTTGTAGACATGTC 58.527 45.455 18.47 18.47 0.00 3.06
503 547 0.955428 TGTCGTGGCCTTGATCTTGC 60.955 55.000 3.32 0.00 0.00 4.01
513 557 2.160417 CCTTGATCTTGCACGACTTTCC 59.840 50.000 0.00 0.00 0.00 3.13
567 611 5.027460 TCAACCCCTACTATTTCTGCACTA 58.973 41.667 0.00 0.00 0.00 2.74
572 616 5.394883 CCCCTACTATTTCTGCACTAACGAA 60.395 44.000 0.00 0.00 0.00 3.85
585 629 6.200808 TGCACTAACGAATGCATGATTAATG 58.799 36.000 0.00 1.10 46.63 1.90
622 666 1.800805 ATTGACAGACGAGCCTTGTG 58.199 50.000 0.00 0.00 0.00 3.33
632 676 3.011119 ACGAGCCTTGTGTTGTTGTAAA 58.989 40.909 0.00 0.00 0.00 2.01
640 684 5.752955 CCTTGTGTTGTTGTAAAATTCCTGG 59.247 40.000 0.00 0.00 0.00 4.45
645 689 2.294791 TGTTGTAAAATTCCTGGCGGTG 59.705 45.455 0.00 0.00 0.00 4.94
669 713 3.941483 ACATGCTTCTGTTATGTAGCACC 59.059 43.478 0.00 0.00 45.39 5.01
686 730 2.545742 GCACCAAAAATGAGTCGCCTTT 60.546 45.455 0.00 0.00 0.00 3.11
687 731 3.305064 GCACCAAAAATGAGTCGCCTTTA 60.305 43.478 0.00 0.00 0.00 1.85
688 732 4.794655 GCACCAAAAATGAGTCGCCTTTAA 60.795 41.667 0.00 0.00 0.00 1.52
689 733 5.469479 CACCAAAAATGAGTCGCCTTTAAT 58.531 37.500 0.00 0.00 0.00 1.40
690 734 5.925969 CACCAAAAATGAGTCGCCTTTAATT 59.074 36.000 0.00 0.00 0.00 1.40
704 748 4.448732 GCCTTTAATTTCTTGGTGTGCTTG 59.551 41.667 0.00 0.00 0.00 4.01
743 1089 3.708890 TCTGTCTGCATTGCTGTTTTTG 58.291 40.909 10.49 1.47 0.00 2.44
881 1227 6.348498 TGGTTGATATCAGTCCTTGTACATG 58.652 40.000 21.46 0.00 0.00 3.21
961 1307 9.914923 CTAACATTTTTGCTCCTTTTAAAACAC 57.085 29.630 0.00 0.00 0.00 3.32
1005 1351 6.417044 CAGTCAATCTCTTCTTTTGCAACAAG 59.583 38.462 0.00 6.83 0.00 3.16
1023 1369 3.144506 CAAGCTGTCAAGATGGTGTTCT 58.855 45.455 0.00 0.00 0.00 3.01
1029 1375 2.740981 GTCAAGATGGTGTTCTCTGCAG 59.259 50.000 7.63 7.63 0.00 4.41
1059 1405 3.942829 TGTGAAGCTATGGACAAGAAGG 58.057 45.455 0.00 0.00 0.00 3.46
1069 1415 3.138304 TGGACAAGAAGGACAACATTCG 58.862 45.455 0.00 0.00 40.98 3.34
1070 1416 3.139077 GGACAAGAAGGACAACATTCGT 58.861 45.455 0.00 0.00 40.98 3.85
1169 1515 2.930040 GCTGTTCAATAGCTTGCTCGTA 59.070 45.455 0.00 0.00 38.14 3.43
1226 1572 8.426881 TCGAATTCGATTGATGTGGTATTTTA 57.573 30.769 25.96 0.00 44.22 1.52
1261 1607 3.059665 GCCTATTTGCACTTTTGTTGCAC 60.060 43.478 0.00 0.00 36.64 4.57
1268 1614 5.363979 TGCACTTTTGTTGCACGATTATA 57.636 34.783 0.00 0.00 33.75 0.98
1294 1640 7.496346 TCTACCTCTGAAAATACCAGTTGAT 57.504 36.000 0.00 0.00 33.57 2.57
1576 1928 2.481185 GCATGTTTGCCAGGACATTTTG 59.519 45.455 0.00 0.00 43.38 2.44
1643 1996 8.703743 CCCTGAAATTTCCCAAAATATGTGATA 58.296 33.333 15.48 0.00 33.93 2.15
1699 2072 4.771590 ATGGTAAATGAGTGCAGTGTTG 57.228 40.909 0.00 0.00 0.00 3.33
1753 2126 5.046529 ACACTTGCAGATTCTCTTATAGCG 58.953 41.667 0.00 0.00 0.00 4.26
1915 2288 2.777832 ACAAAGGTGAGAGAGATGGC 57.222 50.000 0.00 0.00 0.00 4.40
2159 2532 1.813513 AGGAGTGAAGCGTGAATTGG 58.186 50.000 0.00 0.00 0.00 3.16
2343 2716 7.275920 ACACTTCCTACCTTTGCTAAGATATG 58.724 38.462 9.62 0.00 32.92 1.78
2408 2781 3.340034 CTGTGGGGCGACAACTTTTATA 58.660 45.455 0.00 0.00 0.00 0.98
2453 2826 4.394300 CCAATGTGAAGACTGGCTCTAAAG 59.606 45.833 0.00 0.00 0.00 1.85
2470 2843 5.063880 TCTAAAGCTTGTCAAAGAGGGTTC 58.936 41.667 0.00 0.00 35.19 3.62
2554 2927 1.720852 GAATTGTGGCGAATGTTGCAC 59.279 47.619 0.00 0.00 0.00 4.57
2654 3027 2.032223 CAGCCAGCAGTGCTCTGT 59.968 61.111 16.58 0.00 43.05 3.41
2918 3305 3.898123 GCCTTCCTATGTCTCTGGTATGA 59.102 47.826 0.00 0.00 0.00 2.15
2922 3309 6.989169 CCTTCCTATGTCTCTGGTATGAAAAG 59.011 42.308 0.00 0.00 0.00 2.27
2923 3310 6.485830 TCCTATGTCTCTGGTATGAAAAGG 57.514 41.667 0.00 0.00 0.00 3.11
2927 3314 5.359194 TGTCTCTGGTATGAAAAGGGATC 57.641 43.478 0.00 0.00 0.00 3.36
2939 3326 4.943705 TGAAAAGGGATCTGTATGTGAAGC 59.056 41.667 0.00 0.00 0.00 3.86
2972 3359 5.568825 CGTACTGTTATATGGATGGGAAGGG 60.569 48.000 0.00 0.00 0.00 3.95
3065 3452 3.050275 GTGCAACCCTGACGAGCC 61.050 66.667 0.00 0.00 0.00 4.70
3146 3533 3.904136 ATGTTACAGTTGAGTGCAAGC 57.096 42.857 0.00 0.00 34.01 4.01
3167 3554 8.146412 GCAAGCCTTTATCAGATATTCCAAAAT 58.854 33.333 0.00 0.00 0.00 1.82
3192 3579 0.107703 CAAGGTATGAAGCGCCTGGA 60.108 55.000 2.29 0.00 32.16 3.86
3331 3718 3.620488 TGGTGCTCAAGTTGAAGTTTCT 58.380 40.909 7.06 0.00 0.00 2.52
3505 3904 3.627732 ACTGATCATAAGGTACGCTCG 57.372 47.619 0.00 0.00 0.00 5.03
3516 3915 1.536284 GGTACGCTCGAAGATCCTTGG 60.536 57.143 0.00 0.00 33.89 3.61
3542 3944 2.023598 TCAGGATGGGATGTGAGTCTCT 60.024 50.000 0.65 0.00 36.16 3.10
3554 3956 7.370383 GGATGTGAGTCTCTCTGATAAGATTC 58.630 42.308 0.65 6.04 0.00 2.52
3612 4014 4.701651 TGTTCTTGATATGTGCAAGGGAAG 59.298 41.667 0.00 0.00 42.24 3.46
3615 4017 5.188434 TCTTGATATGTGCAAGGGAAGAAG 58.812 41.667 0.00 0.00 42.24 2.85
3629 4031 5.119694 AGGGAAGAAGCGATCTCAATTTAC 58.880 41.667 0.00 0.00 37.42 2.01
3638 4040 6.173339 AGCGATCTCAATTTACTGAAGGAAA 58.827 36.000 0.00 0.00 0.00 3.13
3669 4071 0.622136 TGCTTCCAGATGGCATCAGT 59.378 50.000 27.93 6.84 34.44 3.41
3680 4082 1.339055 TGGCATCAGTAGAAGGTGCAC 60.339 52.381 8.80 8.80 37.53 4.57
3732 4134 4.868314 TTGAAATCCATGATGTTGTGCA 57.132 36.364 0.00 0.00 0.00 4.57
3801 4203 6.494491 CCAATGATTAAGGAGGCCATTAATGA 59.506 38.462 17.23 14.20 32.98 2.57
3802 4204 7.373493 CAATGATTAAGGAGGCCATTAATGAC 58.627 38.462 17.23 4.98 32.98 3.06
3804 4206 6.064060 TGATTAAGGAGGCCATTAATGACTG 58.936 40.000 17.23 1.50 32.98 3.51
3805 4207 2.355010 AGGAGGCCATTAATGACTGC 57.645 50.000 17.23 17.48 0.00 4.40
3808 4210 2.378038 GAGGCCATTAATGACTGCCAA 58.622 47.619 26.30 0.00 44.60 4.52
3811 4213 2.497273 GGCCATTAATGACTGCCAACTT 59.503 45.455 22.20 0.00 41.76 2.66
3813 4215 4.159506 GGCCATTAATGACTGCCAACTTAA 59.840 41.667 22.20 0.00 41.76 1.85
3817 4219 6.389091 CATTAATGACTGCCAACTTAAAGCA 58.611 36.000 10.04 0.00 34.79 3.91
3820 4222 4.935352 TGACTGCCAACTTAAAGCAAAT 57.065 36.364 0.00 0.00 35.79 2.32
3823 4225 3.897505 ACTGCCAACTTAAAGCAAATCCT 59.102 39.130 0.00 0.00 35.79 3.24
3827 4229 4.678044 GCCAACTTAAAGCAAATCCTAGGC 60.678 45.833 2.96 0.00 0.00 3.93
3870 4272 1.074623 AGATCCAGGCCCCTGAGAG 60.075 63.158 15.76 0.00 46.30 3.20
3874 4276 4.106925 CAGGCCCCTGAGAGTGCC 62.107 72.222 8.67 0.00 46.30 5.01
3877 4279 2.045536 GCCCCTGAGAGTGCCTTG 60.046 66.667 0.00 0.00 0.00 3.61
3879 4281 1.920325 CCCCTGAGAGTGCCTTGGA 60.920 63.158 0.00 0.00 0.00 3.53
3880 4282 1.601171 CCCTGAGAGTGCCTTGGAG 59.399 63.158 0.00 0.00 0.00 3.86
3881 4283 0.906756 CCCTGAGAGTGCCTTGGAGA 60.907 60.000 0.00 0.00 0.00 3.71
3882 4284 1.202330 CCTGAGAGTGCCTTGGAGAT 58.798 55.000 0.00 0.00 0.00 2.75
3886 4288 2.842496 TGAGAGTGCCTTGGAGATCATT 59.158 45.455 0.00 0.00 0.00 2.57
3892 4294 1.604278 GCCTTGGAGATCATTTACGGC 59.396 52.381 0.00 0.00 0.00 5.68
3893 4295 2.917933 CCTTGGAGATCATTTACGGCA 58.082 47.619 0.00 0.00 0.00 5.69
3909 4311 4.222124 ACGGCATTCTTAACCAGAAGAT 57.778 40.909 0.00 0.00 45.11 2.40
3910 4312 3.941483 ACGGCATTCTTAACCAGAAGATG 59.059 43.478 0.00 0.00 45.11 2.90
3911 4313 3.941483 CGGCATTCTTAACCAGAAGATGT 59.059 43.478 0.00 0.00 45.11 3.06
3912 4314 4.034510 CGGCATTCTTAACCAGAAGATGTC 59.965 45.833 0.00 0.00 45.11 3.06
3913 4315 4.336713 GGCATTCTTAACCAGAAGATGTCC 59.663 45.833 0.00 0.00 45.11 4.02
3923 4325 1.002087 AGAAGATGTCCCACGTGTTCC 59.998 52.381 15.65 1.65 37.92 3.62
3926 4328 1.298859 GATGTCCCACGTGTTCCAGC 61.299 60.000 15.65 6.45 0.00 4.85
3928 4330 2.110213 TCCCACGTGTTCCAGCAC 59.890 61.111 15.65 0.00 36.12 4.40
3929 4331 2.111043 CCCACGTGTTCCAGCACT 59.889 61.111 15.65 0.00 37.24 4.40
3931 4333 1.101049 CCCACGTGTTCCAGCACTTT 61.101 55.000 15.65 0.00 37.24 2.66
3934 4336 1.400142 CACGTGTTCCAGCACTTTCAA 59.600 47.619 7.58 0.00 37.24 2.69
3937 4339 2.354510 CGTGTTCCAGCACTTTCAAAGA 59.645 45.455 3.49 0.00 37.24 2.52
3938 4340 3.546815 CGTGTTCCAGCACTTTCAAAGAG 60.547 47.826 3.49 0.00 37.24 2.85
3939 4341 3.627577 GTGTTCCAGCACTTTCAAAGAGA 59.372 43.478 3.49 0.00 36.51 3.10
3940 4342 4.096382 GTGTTCCAGCACTTTCAAAGAGAA 59.904 41.667 3.49 0.00 36.51 2.87
3943 4345 2.030451 CCAGCACTTTCAAAGAGAAGGC 60.030 50.000 3.49 0.00 36.84 4.35
3948 4350 3.879295 CACTTTCAAAGAGAAGGCACTCA 59.121 43.478 3.49 0.00 38.49 3.41
3949 4351 4.024218 CACTTTCAAAGAGAAGGCACTCAG 60.024 45.833 3.49 4.50 38.49 3.35
3954 4356 2.947127 AGAGAAGGCACTCAGCTTTT 57.053 45.000 12.68 0.00 43.28 2.27
3957 4359 3.080319 GAGAAGGCACTCAGCTTTTCAT 58.920 45.455 6.80 0.00 43.28 2.57
3959 4361 2.875094 AGGCACTCAGCTTTTCATCT 57.125 45.000 0.00 0.00 44.79 2.90
3961 4363 4.292186 AGGCACTCAGCTTTTCATCTTA 57.708 40.909 0.00 0.00 44.79 2.10
3963 4365 4.699257 AGGCACTCAGCTTTTCATCTTAAG 59.301 41.667 0.00 0.00 44.79 1.85
3965 4367 4.457257 GCACTCAGCTTTTCATCTTAAGGT 59.543 41.667 1.85 0.00 41.15 3.50
3967 4369 5.936956 CACTCAGCTTTTCATCTTAAGGTCT 59.063 40.000 1.85 0.00 30.26 3.85
3970 4372 8.325046 ACTCAGCTTTTCATCTTAAGGTCTTAT 58.675 33.333 1.85 0.00 30.26 1.73
3974 4376 8.543774 AGCTTTTCATCTTAAGGTCTTATCTCA 58.456 33.333 1.85 0.00 0.00 3.27
3975 4377 9.167311 GCTTTTCATCTTAAGGTCTTATCTCAA 57.833 33.333 1.85 0.00 0.00 3.02
3980 4382 7.759886 TCATCTTAAGGTCTTATCTCAACGTTG 59.240 37.037 22.35 22.35 0.00 4.10
3981 4383 6.395629 TCTTAAGGTCTTATCTCAACGTTGG 58.604 40.000 27.02 17.63 0.00 3.77
3982 4384 4.618920 AAGGTCTTATCTCAACGTTGGT 57.381 40.909 27.02 15.87 0.00 3.67
3985 4387 4.039973 AGGTCTTATCTCAACGTTGGTGAA 59.960 41.667 27.02 14.93 0.00 3.18
3988 4390 4.862574 TCTTATCTCAACGTTGGTGAATCG 59.137 41.667 27.02 15.88 0.00 3.34
3998 4400 3.040099 GTTGGTGAATCGTTTGGTTTCG 58.960 45.455 0.00 0.00 0.00 3.46
4002 4404 0.513820 GAATCGTTTGGTTTCGCGGA 59.486 50.000 6.13 0.00 0.00 5.54
4003 4405 0.945813 AATCGTTTGGTTTCGCGGAA 59.054 45.000 6.13 0.00 0.00 4.30
4004 4406 0.515564 ATCGTTTGGTTTCGCGGAAG 59.484 50.000 6.13 0.00 0.00 3.46
4005 4407 0.530211 TCGTTTGGTTTCGCGGAAGA 60.530 50.000 6.13 0.00 0.00 2.87
4006 4408 0.515564 CGTTTGGTTTCGCGGAAGAT 59.484 50.000 6.13 0.00 0.00 2.40
4007 4409 1.069500 CGTTTGGTTTCGCGGAAGATT 60.069 47.619 6.13 0.00 0.00 2.40
4009 4411 2.977829 GTTTGGTTTCGCGGAAGATTTC 59.022 45.455 6.13 0.00 0.00 2.17
4010 4412 1.161843 TGGTTTCGCGGAAGATTTCC 58.838 50.000 6.13 0.66 46.62 3.13
4018 4420 1.378514 GGAAGATTTCCGGGCTGCA 60.379 57.895 0.00 0.00 40.59 4.41
4021 4423 1.250840 AAGATTTCCGGGCTGCAACC 61.251 55.000 0.00 0.00 0.00 3.77
4024 4426 2.424842 ATTTCCGGGCTGCAACCTCA 62.425 55.000 6.03 0.00 0.00 3.86
4108 4510 1.383523 GAAATTCGCTCTCTTGGGGG 58.616 55.000 0.00 0.00 0.00 5.40
4109 4511 0.991920 AAATTCGCTCTCTTGGGGGA 59.008 50.000 0.00 0.00 0.00 4.81
4120 4522 0.034089 CTTGGGGGATGGTCTTGGAC 60.034 60.000 0.00 0.00 0.00 4.02
4150 4552 0.392729 CCAAGAAGCTCAGCCCTCTG 60.393 60.000 0.00 0.00 41.67 3.35
4162 4572 0.833287 GCCCTCTGCAGTCCTGATTA 59.167 55.000 14.67 0.00 40.77 1.75
4184 4594 2.034066 CGCAAGGCCCCTCAAGAA 59.966 61.111 0.00 0.00 0.00 2.52
4185 4595 1.603455 CGCAAGGCCCCTCAAGAAA 60.603 57.895 0.00 0.00 0.00 2.52
4186 4596 1.866853 CGCAAGGCCCCTCAAGAAAC 61.867 60.000 0.00 0.00 0.00 2.78
4188 4598 1.703411 CAAGGCCCCTCAAGAAACAA 58.297 50.000 0.00 0.00 0.00 2.83
4190 4600 0.853530 AGGCCCCTCAAGAAACAAGT 59.146 50.000 0.00 0.00 0.00 3.16
4191 4601 0.961753 GGCCCCTCAAGAAACAAGTG 59.038 55.000 0.00 0.00 0.00 3.16
4192 4602 1.692411 GCCCCTCAAGAAACAAGTGT 58.308 50.000 0.00 0.00 0.00 3.55
4195 4605 3.490348 CCCCTCAAGAAACAAGTGTCAT 58.510 45.455 0.00 0.00 0.00 3.06
4197 4607 4.342092 CCCCTCAAGAAACAAGTGTCATTT 59.658 41.667 0.00 0.00 0.00 2.32
4199 4609 6.340522 CCCTCAAGAAACAAGTGTCATTTTT 58.659 36.000 0.00 0.00 0.00 1.94
4253 4677 1.343142 ACGGAGTGGAAAATTTTGCCC 59.657 47.619 18.37 11.85 42.51 5.36
4307 4731 2.545742 CCGCCATCTGATCGATGTAACA 60.546 50.000 19.28 0.00 46.56 2.41
4438 4862 0.107312 ACATTAGCAGCAGCCTGGAG 60.107 55.000 0.00 0.00 43.56 3.86
4557 4981 3.247173 GCTGCTTGATACATGAGCTACAC 59.753 47.826 0.00 0.00 37.32 2.90
4564 4988 5.445964 TGATACATGAGCTACACTACCTCA 58.554 41.667 0.00 0.00 39.65 3.86
4655 5079 5.346822 GCAAGCAATTCAAGTAAATGTCCTG 59.653 40.000 0.00 0.00 0.00 3.86
4704 5128 1.411977 CCACATGGCAAAAACAGGACA 59.588 47.619 0.00 0.00 0.00 4.02
4705 5129 2.158986 CCACATGGCAAAAACAGGACAA 60.159 45.455 0.00 0.00 0.00 3.18
4746 5170 4.934602 GCAGAAGTAGAGTGCTCATTCTTT 59.065 41.667 0.28 0.00 34.23 2.52
4754 5178 4.826183 AGAGTGCTCATTCTTTTCTGCTTT 59.174 37.500 1.82 0.00 0.00 3.51
4959 5383 3.679389 TGGTGAGAAGAAGAATCAAGGC 58.321 45.455 0.00 0.00 0.00 4.35
4966 5390 6.718454 TGAGAAGAAGAATCAAGGCTGAAATT 59.282 34.615 0.00 0.00 34.49 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 4.142665 TGGATATACTCGCTCGCTTACATC 60.143 45.833 0.00 0.00 0.00 3.06
111 112 2.631062 GTGTCGTGGGTCCATGGATATA 59.369 50.000 19.62 4.10 33.99 0.86
112 113 1.416401 GTGTCGTGGGTCCATGGATAT 59.584 52.381 19.62 0.00 33.99 1.63
177 221 1.074471 CCCCCTGGCTAGGCTAGAA 60.074 63.158 25.37 11.05 43.16 2.10
199 243 1.086634 GTGGTGGATGCTCTCGCTTC 61.087 60.000 0.00 0.00 39.03 3.86
201 245 2.581354 GTGGTGGATGCTCTCGCT 59.419 61.111 0.00 0.00 36.97 4.93
202 246 2.512515 GGTGGTGGATGCTCTCGC 60.513 66.667 0.00 0.00 0.00 5.03
203 247 2.202797 CGGTGGTGGATGCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
204 248 1.142748 CTCGGTGGTGGATGCTCTC 59.857 63.158 0.00 0.00 0.00 3.20
205 249 3.023949 GCTCGGTGGTGGATGCTCT 62.024 63.158 0.00 0.00 0.00 4.09
206 250 2.512515 GCTCGGTGGTGGATGCTC 60.513 66.667 0.00 0.00 0.00 4.26
207 251 4.457496 CGCTCGGTGGTGGATGCT 62.457 66.667 0.00 0.00 0.00 3.79
208 252 4.451150 TCGCTCGGTGGTGGATGC 62.451 66.667 0.00 0.00 0.00 3.91
209 253 2.202797 CTCGCTCGGTGGTGGATG 60.203 66.667 0.00 0.00 0.00 3.51
210 254 3.461773 CCTCGCTCGGTGGTGGAT 61.462 66.667 0.00 0.00 0.00 3.41
246 290 2.513897 GTACCACGATGGCCCAGC 60.514 66.667 0.00 0.00 42.67 4.85
247 291 2.202878 CGTACCACGATGGCCCAG 60.203 66.667 0.00 0.00 46.05 4.45
248 292 3.776781 CCGTACCACGATGGCCCA 61.777 66.667 0.00 0.00 46.05 5.36
260 304 4.944372 CAGATCCGGGCGCCGTAC 62.944 72.222 22.54 5.60 46.80 3.67
271 315 3.934962 GAGGGGGCGCTCAGATCC 61.935 72.222 10.74 0.00 0.00 3.36
272 316 3.934962 GGAGGGGGCGCTCAGATC 61.935 72.222 10.74 2.89 0.00 2.75
281 325 3.412408 GTTGGAGAGGGAGGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
282 326 1.690985 GAGTTGGAGAGGGAGGGGG 60.691 68.421 0.00 0.00 0.00 5.40
283 327 0.689412 GAGAGTTGGAGAGGGAGGGG 60.689 65.000 0.00 0.00 0.00 4.79
284 328 0.338120 AGAGAGTTGGAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
285 329 1.687996 GGAGAGAGTTGGAGAGGGAGG 60.688 61.905 0.00 0.00 0.00 4.30
286 330 1.775385 GGAGAGAGTTGGAGAGGGAG 58.225 60.000 0.00 0.00 0.00 4.30
287 331 0.033991 CGGAGAGAGTTGGAGAGGGA 60.034 60.000 0.00 0.00 0.00 4.20
288 332 1.671901 GCGGAGAGAGTTGGAGAGGG 61.672 65.000 0.00 0.00 0.00 4.30
289 333 1.813192 GCGGAGAGAGTTGGAGAGG 59.187 63.158 0.00 0.00 0.00 3.69
290 334 1.431440 CGCGGAGAGAGTTGGAGAG 59.569 63.158 0.00 0.00 0.00 3.20
291 335 2.701780 GCGCGGAGAGAGTTGGAGA 61.702 63.158 8.83 0.00 0.00 3.71
292 336 2.202676 GCGCGGAGAGAGTTGGAG 60.203 66.667 8.83 0.00 0.00 3.86
293 337 4.116328 CGCGCGGAGAGAGTTGGA 62.116 66.667 24.84 0.00 0.00 3.53
307 351 2.337749 ATACTCTTGGAGGACGCGCG 62.338 60.000 30.96 30.96 33.35 6.86
308 352 0.666913 TATACTCTTGGAGGACGCGC 59.333 55.000 5.73 0.00 33.35 6.86
309 353 4.966965 ATATATACTCTTGGAGGACGCG 57.033 45.455 3.53 3.53 33.35 6.01
310 354 5.394333 GGGAATATATACTCTTGGAGGACGC 60.394 48.000 0.00 0.00 33.35 5.19
311 355 5.127356 GGGGAATATATACTCTTGGAGGACG 59.873 48.000 0.00 0.00 33.35 4.79
312 356 6.265304 AGGGGAATATATACTCTTGGAGGAC 58.735 44.000 0.00 0.00 33.35 3.85
313 357 6.500490 AGGGGAATATATACTCTTGGAGGA 57.500 41.667 0.00 0.00 33.35 3.71
314 358 5.663556 GGAGGGGAATATATACTCTTGGAGG 59.336 48.000 0.00 0.00 33.35 4.30
315 359 6.507568 AGGAGGGGAATATATACTCTTGGAG 58.492 44.000 0.00 0.00 35.52 3.86
316 360 6.280649 AGAGGAGGGGAATATATACTCTTGGA 59.719 42.308 0.00 0.00 30.48 3.53
317 361 6.382570 CAGAGGAGGGGAATATATACTCTTGG 59.617 46.154 0.00 0.00 32.20 3.61
318 362 6.127196 GCAGAGGAGGGGAATATATACTCTTG 60.127 46.154 0.00 0.00 32.20 3.02
319 363 5.961421 GCAGAGGAGGGGAATATATACTCTT 59.039 44.000 0.00 0.00 32.20 2.85
320 364 5.524535 GCAGAGGAGGGGAATATATACTCT 58.475 45.833 0.00 0.00 34.65 3.24
321 365 4.651962 GGCAGAGGAGGGGAATATATACTC 59.348 50.000 0.00 0.00 0.00 2.59
322 366 4.575264 GGGCAGAGGAGGGGAATATATACT 60.575 50.000 0.00 0.00 0.00 2.12
323 367 3.712218 GGGCAGAGGAGGGGAATATATAC 59.288 52.174 0.00 0.00 0.00 1.47
324 368 3.607575 AGGGCAGAGGAGGGGAATATATA 59.392 47.826 0.00 0.00 0.00 0.86
325 369 2.392100 AGGGCAGAGGAGGGGAATATAT 59.608 50.000 0.00 0.00 0.00 0.86
326 370 1.802117 AGGGCAGAGGAGGGGAATATA 59.198 52.381 0.00 0.00 0.00 0.86
327 371 0.575333 AGGGCAGAGGAGGGGAATAT 59.425 55.000 0.00 0.00 0.00 1.28
328 372 0.400525 CAGGGCAGAGGAGGGGAATA 60.401 60.000 0.00 0.00 0.00 1.75
329 373 1.695597 CAGGGCAGAGGAGGGGAAT 60.696 63.158 0.00 0.00 0.00 3.01
330 374 2.285668 CAGGGCAGAGGAGGGGAA 60.286 66.667 0.00 0.00 0.00 3.97
335 379 3.478274 GAGGGCAGGGCAGAGGAG 61.478 72.222 0.00 0.00 0.00 3.69
336 380 3.870607 TTGAGGGCAGGGCAGAGGA 62.871 63.158 0.00 0.00 0.00 3.71
337 381 2.621517 GATTGAGGGCAGGGCAGAGG 62.622 65.000 0.00 0.00 0.00 3.69
338 382 1.153005 GATTGAGGGCAGGGCAGAG 60.153 63.158 0.00 0.00 0.00 3.35
339 383 2.683465 GGATTGAGGGCAGGGCAGA 61.683 63.158 0.00 0.00 0.00 4.26
340 384 2.123982 GGATTGAGGGCAGGGCAG 60.124 66.667 0.00 0.00 0.00 4.85
341 385 3.743017 GGGATTGAGGGCAGGGCA 61.743 66.667 0.00 0.00 0.00 5.36
342 386 4.529731 GGGGATTGAGGGCAGGGC 62.530 72.222 0.00 0.00 0.00 5.19
343 387 3.023116 TGGGGATTGAGGGCAGGG 61.023 66.667 0.00 0.00 0.00 4.45
344 388 2.276740 GTGGGGATTGAGGGCAGG 59.723 66.667 0.00 0.00 0.00 4.85
345 389 2.124570 CGTGGGGATTGAGGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
346 390 4.424711 GCGTGGGGATTGAGGGCA 62.425 66.667 0.00 0.00 0.00 5.36
347 391 3.721370 ATGCGTGGGGATTGAGGGC 62.721 63.158 0.00 0.00 0.00 5.19
348 392 1.825191 CATGCGTGGGGATTGAGGG 60.825 63.158 0.00 0.00 0.00 4.30
349 393 0.180171 TACATGCGTGGGGATTGAGG 59.820 55.000 11.36 0.00 0.00 3.86
350 394 1.875514 CATACATGCGTGGGGATTGAG 59.124 52.381 11.36 0.00 0.00 3.02
351 395 1.488393 TCATACATGCGTGGGGATTGA 59.512 47.619 11.36 3.00 0.00 2.57
352 396 1.965935 TCATACATGCGTGGGGATTG 58.034 50.000 11.36 0.63 0.00 2.67
353 397 2.727123 TTCATACATGCGTGGGGATT 57.273 45.000 11.36 0.00 0.00 3.01
354 398 2.727123 TTTCATACATGCGTGGGGAT 57.273 45.000 11.36 0.00 0.00 3.85
355 399 2.727123 ATTTCATACATGCGTGGGGA 57.273 45.000 11.36 1.58 0.00 4.81
356 400 4.909696 TTTATTTCATACATGCGTGGGG 57.090 40.909 11.36 0.00 0.00 4.96
357 401 6.070897 TGATTTATTTCATACATGCGTGGG 57.929 37.500 11.36 0.00 0.00 4.61
358 402 6.088483 GCATGATTTATTTCATACATGCGTGG 59.912 38.462 11.36 0.00 46.28 4.94
359 403 7.029925 GCATGATTTATTTCATACATGCGTG 57.970 36.000 3.82 3.82 46.28 5.34
386 430 9.554053 AGGAAGCAGAGGAGTATATACATAAAT 57.446 33.333 15.18 0.00 0.00 1.40
387 431 8.807118 CAGGAAGCAGAGGAGTATATACATAAA 58.193 37.037 15.18 0.00 0.00 1.40
388 432 7.950684 ACAGGAAGCAGAGGAGTATATACATAA 59.049 37.037 15.18 0.00 0.00 1.90
389 433 7.471041 ACAGGAAGCAGAGGAGTATATACATA 58.529 38.462 15.18 0.00 0.00 2.29
390 434 6.318913 ACAGGAAGCAGAGGAGTATATACAT 58.681 40.000 15.18 0.62 0.00 2.29
391 435 5.706447 ACAGGAAGCAGAGGAGTATATACA 58.294 41.667 15.18 0.00 0.00 2.29
392 436 6.128227 CGTACAGGAAGCAGAGGAGTATATAC 60.128 46.154 4.60 4.60 0.00 1.47
393 437 5.938710 CGTACAGGAAGCAGAGGAGTATATA 59.061 44.000 0.00 0.00 0.00 0.86
394 438 4.762765 CGTACAGGAAGCAGAGGAGTATAT 59.237 45.833 0.00 0.00 0.00 0.86
395 439 4.135306 CGTACAGGAAGCAGAGGAGTATA 58.865 47.826 0.00 0.00 0.00 1.47
396 440 2.952978 CGTACAGGAAGCAGAGGAGTAT 59.047 50.000 0.00 0.00 0.00 2.12
397 441 2.366533 CGTACAGGAAGCAGAGGAGTA 58.633 52.381 0.00 0.00 0.00 2.59
398 442 1.178276 CGTACAGGAAGCAGAGGAGT 58.822 55.000 0.00 0.00 0.00 3.85
399 443 0.179124 GCGTACAGGAAGCAGAGGAG 60.179 60.000 0.00 0.00 32.03 3.69
400 444 1.890894 GCGTACAGGAAGCAGAGGA 59.109 57.895 0.00 0.00 32.03 3.71
401 445 1.517257 CGCGTACAGGAAGCAGAGG 60.517 63.158 0.00 0.00 32.03 3.69
402 446 0.101399 ATCGCGTACAGGAAGCAGAG 59.899 55.000 5.77 0.00 32.03 3.35
403 447 0.530744 AATCGCGTACAGGAAGCAGA 59.469 50.000 5.77 0.00 32.03 4.26
404 448 1.324736 GAAATCGCGTACAGGAAGCAG 59.675 52.381 5.77 0.00 32.03 4.24
405 449 1.337354 TGAAATCGCGTACAGGAAGCA 60.337 47.619 5.77 0.00 32.03 3.91
406 450 1.060698 GTGAAATCGCGTACAGGAAGC 59.939 52.381 5.77 0.00 0.00 3.86
407 451 2.607187 AGTGAAATCGCGTACAGGAAG 58.393 47.619 5.77 0.00 0.00 3.46
408 452 2.736144 AGTGAAATCGCGTACAGGAA 57.264 45.000 5.77 0.00 0.00 3.36
409 453 2.736144 AAGTGAAATCGCGTACAGGA 57.264 45.000 5.77 0.00 0.00 3.86
410 454 3.059188 ACAAAAGTGAAATCGCGTACAGG 60.059 43.478 5.77 0.00 0.00 4.00
411 455 4.128554 ACAAAAGTGAAATCGCGTACAG 57.871 40.909 5.77 0.00 0.00 2.74
412 456 5.654317 TTACAAAAGTGAAATCGCGTACA 57.346 34.783 5.77 0.00 0.00 2.90
413 457 5.337773 GGTTTACAAAAGTGAAATCGCGTAC 59.662 40.000 5.77 0.00 0.00 3.67
414 458 5.442402 GGTTTACAAAAGTGAAATCGCGTA 58.558 37.500 5.77 0.00 0.00 4.42
415 459 4.284485 GGTTTACAAAAGTGAAATCGCGT 58.716 39.130 5.77 0.00 0.00 6.01
416 460 3.356658 CGGTTTACAAAAGTGAAATCGCG 59.643 43.478 0.00 0.00 30.80 5.87
417 461 4.529446 TCGGTTTACAAAAGTGAAATCGC 58.471 39.130 0.00 0.00 36.78 4.58
418 462 6.959311 CCTATCGGTTTACAAAAGTGAAATCG 59.041 38.462 0.00 0.00 37.88 3.34
419 463 8.036273 TCCTATCGGTTTACAAAAGTGAAATC 57.964 34.615 0.00 0.00 0.00 2.17
420 464 7.989416 TCCTATCGGTTTACAAAAGTGAAAT 57.011 32.000 0.00 0.00 0.00 2.17
421 465 7.574217 GCATCCTATCGGTTTACAAAAGTGAAA 60.574 37.037 0.00 0.00 0.00 2.69
422 466 6.128117 GCATCCTATCGGTTTACAAAAGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
423 467 5.353123 GCATCCTATCGGTTTACAAAAGTGA 59.647 40.000 0.00 0.00 0.00 3.41
424 468 5.123186 TGCATCCTATCGGTTTACAAAAGTG 59.877 40.000 0.00 0.00 0.00 3.16
425 469 5.250200 TGCATCCTATCGGTTTACAAAAGT 58.750 37.500 0.00 0.00 0.00 2.66
426 470 5.584649 TCTGCATCCTATCGGTTTACAAAAG 59.415 40.000 0.00 0.00 0.00 2.27
427 471 5.492895 TCTGCATCCTATCGGTTTACAAAA 58.507 37.500 0.00 0.00 0.00 2.44
428 472 5.092554 TCTGCATCCTATCGGTTTACAAA 57.907 39.130 0.00 0.00 0.00 2.83
429 473 4.442893 CCTCTGCATCCTATCGGTTTACAA 60.443 45.833 0.00 0.00 0.00 2.41
430 474 3.069586 CCTCTGCATCCTATCGGTTTACA 59.930 47.826 0.00 0.00 0.00 2.41
431 475 3.321111 TCCTCTGCATCCTATCGGTTTAC 59.679 47.826 0.00 0.00 0.00 2.01
432 476 3.572642 TCCTCTGCATCCTATCGGTTTA 58.427 45.455 0.00 0.00 0.00 2.01
433 477 2.398588 TCCTCTGCATCCTATCGGTTT 58.601 47.619 0.00 0.00 0.00 3.27
434 478 2.088104 TCCTCTGCATCCTATCGGTT 57.912 50.000 0.00 0.00 0.00 4.44
435 479 2.088104 TTCCTCTGCATCCTATCGGT 57.912 50.000 0.00 0.00 0.00 4.69
436 480 3.134458 GTTTTCCTCTGCATCCTATCGG 58.866 50.000 0.00 0.00 0.00 4.18
437 481 3.797039 TGTTTTCCTCTGCATCCTATCG 58.203 45.455 0.00 0.00 0.00 2.92
438 482 5.189180 ACTTGTTTTCCTCTGCATCCTATC 58.811 41.667 0.00 0.00 0.00 2.08
439 483 5.184892 ACTTGTTTTCCTCTGCATCCTAT 57.815 39.130 0.00 0.00 0.00 2.57
440 484 4.640771 ACTTGTTTTCCTCTGCATCCTA 57.359 40.909 0.00 0.00 0.00 2.94
441 485 3.515602 ACTTGTTTTCCTCTGCATCCT 57.484 42.857 0.00 0.00 0.00 3.24
442 486 3.858503 GCAACTTGTTTTCCTCTGCATCC 60.859 47.826 0.00 0.00 0.00 3.51
443 487 3.005155 AGCAACTTGTTTTCCTCTGCATC 59.995 43.478 0.00 0.00 0.00 3.91
444 488 2.961062 AGCAACTTGTTTTCCTCTGCAT 59.039 40.909 0.00 0.00 0.00 3.96
445 489 2.378038 AGCAACTTGTTTTCCTCTGCA 58.622 42.857 0.00 0.00 0.00 4.41
446 490 3.118542 CAAGCAACTTGTTTTCCTCTGC 58.881 45.455 0.00 0.00 36.79 4.26
465 509 3.880490 GACATGTCTACAAACCCACACAA 59.120 43.478 18.83 0.00 0.00 3.33
487 531 1.503542 GTGCAAGATCAAGGCCACG 59.496 57.895 5.01 0.00 0.00 4.94
503 547 1.327460 CACACACAGTGGAAAGTCGTG 59.673 52.381 5.31 0.00 44.69 4.35
567 611 7.148188 ACAGAGAACATTAATCATGCATTCGTT 60.148 33.333 0.00 0.00 36.14 3.85
572 616 6.238566 CGGAACAGAGAACATTAATCATGCAT 60.239 38.462 0.00 0.00 36.14 3.96
582 626 3.703001 ATGGACGGAACAGAGAACATT 57.297 42.857 0.00 0.00 0.00 2.71
585 629 4.567159 GTCAATATGGACGGAACAGAGAAC 59.433 45.833 0.00 0.00 0.00 3.01
622 666 3.243602 ACCGCCAGGAATTTTACAACAAC 60.244 43.478 0.00 0.00 41.02 3.32
632 676 1.750193 CATGTACACCGCCAGGAATT 58.250 50.000 0.00 0.00 41.02 2.17
640 684 1.156736 AACAGAAGCATGTACACCGC 58.843 50.000 10.44 10.44 31.70 5.68
645 689 5.006746 GGTGCTACATAACAGAAGCATGTAC 59.993 44.000 0.00 0.00 45.86 2.90
669 713 7.873739 AGAAATTAAAGGCGACTCATTTTTG 57.126 32.000 0.00 0.00 42.68 2.44
686 730 5.538053 TGGAATCAAGCACACCAAGAAATTA 59.462 36.000 0.00 0.00 0.00 1.40
687 731 4.344679 TGGAATCAAGCACACCAAGAAATT 59.655 37.500 0.00 0.00 0.00 1.82
688 732 3.896888 TGGAATCAAGCACACCAAGAAAT 59.103 39.130 0.00 0.00 0.00 2.17
689 733 3.295093 TGGAATCAAGCACACCAAGAAA 58.705 40.909 0.00 0.00 0.00 2.52
690 734 2.942804 TGGAATCAAGCACACCAAGAA 58.057 42.857 0.00 0.00 0.00 2.52
704 748 2.293677 CAGAGCAGGCATGATTGGAATC 59.706 50.000 0.62 0.00 35.97 2.52
881 1227 5.123027 CCAAACTCAAAGAATAGCTCAGGAC 59.877 44.000 0.00 0.00 0.00 3.85
961 1307 9.698309 ATTGACTGTTTCTGGAATATATACTCG 57.302 33.333 0.00 0.00 0.00 4.18
979 1325 5.357878 TGTTGCAAAAGAAGAGATTGACTGT 59.642 36.000 0.00 0.00 0.00 3.55
1005 1351 2.740981 CAGAGAACACCATCTTGACAGC 59.259 50.000 0.00 0.00 0.00 4.40
1023 1369 3.593096 CTTCACATAACTCTGCTGCAGA 58.407 45.455 28.77 28.77 38.25 4.26
1029 1375 4.509600 GTCCATAGCTTCACATAACTCTGC 59.490 45.833 0.00 0.00 0.00 4.26
1059 1405 6.129009 ACAATAGACACGTTACGAATGTTGTC 60.129 38.462 13.03 14.05 33.01 3.18
1069 1415 5.867716 AGATGACCAACAATAGACACGTTAC 59.132 40.000 0.00 0.00 0.00 2.50
1070 1416 5.867174 CAGATGACCAACAATAGACACGTTA 59.133 40.000 0.00 0.00 0.00 3.18
1169 1515 6.761714 ACAATTTTTACGAAGAGACAGACAGT 59.238 34.615 0.00 0.00 0.00 3.55
1219 1565 9.965824 AATAGGCTATGTTGCACAATAAAATAC 57.034 29.630 7.99 0.00 34.04 1.89
1226 1572 4.685924 GCAAATAGGCTATGTTGCACAAT 58.314 39.130 29.10 6.63 44.53 2.71
1268 1614 7.918076 TCAACTGGTATTTTCAGAGGTAGAAT 58.082 34.615 0.00 0.00 36.22 2.40
1294 1640 6.664816 AGAACTCCATTATTGCCAAATTCAGA 59.335 34.615 0.00 0.00 0.00 3.27
1366 1712 5.523369 AGTTTAGAAATTGCTGAACTGCAC 58.477 37.500 20.05 0.00 41.43 4.57
1517 1867 8.518430 AACTGAATTGCATAATACCACATACA 57.482 30.769 0.00 0.00 0.00 2.29
1538 1888 6.889301 AACATGCATATCCTTATGGAACTG 57.111 37.500 0.00 3.86 46.80 3.16
1576 1928 6.694877 AAAAGGACAAACCAGAGAGTTAAC 57.305 37.500 0.00 0.00 42.04 2.01
1643 1996 2.151202 ACATCCGAATTGCAAAGACGT 58.849 42.857 1.71 0.00 0.00 4.34
1699 2072 7.083858 TGCCTGCGATAATTAAATAGAATTGC 58.916 34.615 0.00 0.00 31.51 3.56
1753 2126 1.322442 GTCCAATAATCCCAGCAGCC 58.678 55.000 0.00 0.00 0.00 4.85
1876 2249 3.834813 TGTAAGCCTTGAGTGACTCATCT 59.165 43.478 16.98 10.88 40.39 2.90
1915 2288 8.733458 TCAATAAGGTTCATCAAGAATCTGTTG 58.267 33.333 0.00 0.00 46.94 3.33
1930 2303 3.610911 CCCAGGTGAGTCAATAAGGTTC 58.389 50.000 0.00 0.00 0.00 3.62
2159 2532 2.961741 TCTGATAGACCTGCTCACCATC 59.038 50.000 0.00 0.00 0.00 3.51
2408 2781 3.066203 GTCCATTTCTTTGTGACGTGGTT 59.934 43.478 0.00 0.00 33.54 3.67
2453 2826 1.531578 GACGAACCCTCTTTGACAAGC 59.468 52.381 0.00 0.00 0.00 4.01
2470 2843 6.749216 ATTGTATTATAGCAGAACGTGACG 57.251 37.500 2.24 2.24 0.00 4.35
2554 2927 2.979813 GTTAATGCTCACGCCAAACTTG 59.020 45.455 0.00 0.00 34.43 3.16
2654 3027 6.466326 GGGAGGTGGAATATCATCATCTCAAA 60.466 42.308 12.31 0.00 39.64 2.69
2918 3305 3.941483 CGCTTCACATACAGATCCCTTTT 59.059 43.478 0.00 0.00 0.00 2.27
2922 3309 2.205074 CACGCTTCACATACAGATCCC 58.795 52.381 0.00 0.00 0.00 3.85
2923 3310 2.893637 ACACGCTTCACATACAGATCC 58.106 47.619 0.00 0.00 0.00 3.36
2927 3314 2.159787 GCTCAACACGCTTCACATACAG 60.160 50.000 0.00 0.00 0.00 2.74
2939 3326 4.206404 CCATATAACAGTACGCTCAACACG 59.794 45.833 0.00 0.00 0.00 4.49
2972 3359 5.760128 GGCATATCCAACACCATCTTGGTC 61.760 50.000 0.00 0.00 41.36 4.02
3042 3429 1.141254 TCGTCAGGGTTGCACCTTTTA 59.859 47.619 0.00 0.00 39.34 1.52
3065 3452 1.404391 GCATGCATCAACCTCCTCTTG 59.596 52.381 14.21 0.00 0.00 3.02
3167 3554 2.346803 GCGCTTCATACCTTGAGTGAA 58.653 47.619 0.00 0.00 35.27 3.18
3192 3579 7.785033 ACAGAAAACCACAAGATCAGATTTTT 58.215 30.769 0.00 0.00 0.00 1.94
3231 3618 2.063266 CCGCAACTGTGTATGTACGTT 58.937 47.619 0.00 0.00 0.00 3.99
3331 3718 3.960755 CACAGAGACATACCATAGGACCA 59.039 47.826 0.00 0.00 0.00 4.02
3505 3904 2.834549 TCCTGACTCACCAAGGATCTTC 59.165 50.000 0.00 0.00 0.00 2.87
3516 3915 1.833630 TCACATCCCATCCTGACTCAC 59.166 52.381 0.00 0.00 0.00 3.51
3542 3944 4.402474 TCCGAAGCACAGAATCTTATCAGA 59.598 41.667 0.00 0.00 0.00 3.27
3554 3956 1.798813 GTTGTTAGGTCCGAAGCACAG 59.201 52.381 0.00 0.00 0.00 3.66
3612 4014 5.812642 TCCTTCAGTAAATTGAGATCGCTTC 59.187 40.000 0.00 0.00 0.00 3.86
3615 4017 6.092807 AGTTTCCTTCAGTAAATTGAGATCGC 59.907 38.462 0.00 0.00 0.00 4.58
3629 4031 4.797275 GCATTCCACCAAAGTTTCCTTCAG 60.797 45.833 0.00 0.00 0.00 3.02
3669 4071 1.134995 CAGCGATCAGTGCACCTTCTA 60.135 52.381 14.63 0.00 33.85 2.10
3732 4134 5.534654 TGGCTAAATTTTTCACTAGTGTGCT 59.465 36.000 21.99 4.58 43.49 4.40
3801 4203 3.897505 AGGATTTGCTTTAAGTTGGCAGT 59.102 39.130 0.00 0.00 37.28 4.40
3802 4204 4.525912 AGGATTTGCTTTAAGTTGGCAG 57.474 40.909 0.00 0.00 37.28 4.85
3804 4206 4.678044 GCCTAGGATTTGCTTTAAGTTGGC 60.678 45.833 14.75 0.00 0.00 4.52
3805 4207 4.706962 AGCCTAGGATTTGCTTTAAGTTGG 59.293 41.667 14.75 0.00 29.17 3.77
3813 4215 4.642437 GCTCTAAAAGCCTAGGATTTGCTT 59.358 41.667 25.04 12.58 45.92 3.91
3827 4229 6.070995 TCCACCATATATACGGGCTCTAAAAG 60.071 42.308 0.00 0.00 0.00 2.27
3829 4231 5.335261 TCCACCATATATACGGGCTCTAAA 58.665 41.667 0.00 0.00 0.00 1.85
3830 4232 4.938028 TCCACCATATATACGGGCTCTAA 58.062 43.478 0.00 0.00 0.00 2.10
3832 4234 3.011369 TCTCCACCATATATACGGGCTCT 59.989 47.826 0.00 0.00 0.00 4.09
3838 4240 4.202161 GCCTGGATCTCCACCATATATACG 60.202 50.000 0.00 0.00 42.01 3.06
3841 4243 3.118531 GGCCTGGATCTCCACCATATAT 58.881 50.000 0.00 0.00 42.01 0.86
3844 4246 0.768221 GGGCCTGGATCTCCACCATA 60.768 60.000 0.84 0.00 42.01 2.74
3845 4247 2.081161 GGGCCTGGATCTCCACCAT 61.081 63.158 0.84 0.00 42.01 3.55
3862 4264 0.906756 TCTCCAAGGCACTCTCAGGG 60.907 60.000 0.00 0.00 38.49 4.45
3870 4272 2.614057 CCGTAAATGATCTCCAAGGCAC 59.386 50.000 0.00 0.00 0.00 5.01
3874 4276 4.818546 AGAATGCCGTAAATGATCTCCAAG 59.181 41.667 0.00 0.00 0.00 3.61
3875 4277 4.780815 AGAATGCCGTAAATGATCTCCAA 58.219 39.130 0.00 0.00 0.00 3.53
3877 4279 6.293462 GGTTAAGAATGCCGTAAATGATCTCC 60.293 42.308 0.00 0.00 0.00 3.71
3879 4281 6.119536 TGGTTAAGAATGCCGTAAATGATCT 58.880 36.000 0.00 0.00 0.00 2.75
3880 4282 6.260050 TCTGGTTAAGAATGCCGTAAATGATC 59.740 38.462 0.00 0.00 29.54 2.92
3881 4283 6.119536 TCTGGTTAAGAATGCCGTAAATGAT 58.880 36.000 0.00 0.00 29.54 2.45
3882 4284 5.492895 TCTGGTTAAGAATGCCGTAAATGA 58.507 37.500 0.00 0.00 29.54 2.57
3886 4288 5.155278 TCTTCTGGTTAAGAATGCCGTAA 57.845 39.130 0.00 0.00 44.02 3.18
3892 4294 5.355350 GTGGGACATCTTCTGGTTAAGAATG 59.645 44.000 0.00 0.00 42.43 2.67
3893 4295 5.501156 GTGGGACATCTTCTGGTTAAGAAT 58.499 41.667 0.00 0.00 42.43 2.40
3909 4311 2.110213 GCTGGAACACGTGGGACA 59.890 61.111 21.57 13.67 0.00 4.02
3910 4312 2.110213 TGCTGGAACACGTGGGAC 59.890 61.111 21.57 9.52 0.00 4.46
3911 4313 1.978455 AAGTGCTGGAACACGTGGGA 61.978 55.000 21.57 0.00 45.45 4.37
3912 4314 1.101049 AAAGTGCTGGAACACGTGGG 61.101 55.000 21.57 5.52 45.45 4.61
3913 4315 0.307760 GAAAGTGCTGGAACACGTGG 59.692 55.000 21.57 2.06 45.45 4.94
3923 4325 2.620115 TGCCTTCTCTTTGAAAGTGCTG 59.380 45.455 4.68 0.00 33.79 4.41
3926 4328 3.879295 TGAGTGCCTTCTCTTTGAAAGTG 59.121 43.478 4.68 2.64 35.68 3.16
3928 4330 3.058363 GCTGAGTGCCTTCTCTTTGAAAG 60.058 47.826 0.00 0.00 35.68 2.62
3929 4331 2.880890 GCTGAGTGCCTTCTCTTTGAAA 59.119 45.455 0.00 0.00 35.68 2.69
3931 4333 1.696336 AGCTGAGTGCCTTCTCTTTGA 59.304 47.619 0.00 0.00 44.23 2.69
3934 4336 2.947127 AAAGCTGAGTGCCTTCTCTT 57.053 45.000 0.00 0.00 44.23 2.85
3937 4339 2.645838 TGAAAAGCTGAGTGCCTTCT 57.354 45.000 0.00 0.00 44.23 2.85
3938 4340 3.080319 AGATGAAAAGCTGAGTGCCTTC 58.920 45.455 0.00 0.00 44.23 3.46
3939 4341 3.151912 AGATGAAAAGCTGAGTGCCTT 57.848 42.857 0.00 0.00 44.23 4.35
3940 4342 2.875094 AGATGAAAAGCTGAGTGCCT 57.125 45.000 0.00 0.00 44.23 4.75
3943 4345 5.936956 AGACCTTAAGATGAAAAGCTGAGTG 59.063 40.000 3.36 0.00 0.00 3.51
3946 4348 8.543774 AGATAAGACCTTAAGATGAAAAGCTGA 58.456 33.333 3.36 0.00 0.00 4.26
3948 4350 8.543774 TGAGATAAGACCTTAAGATGAAAAGCT 58.456 33.333 3.36 0.00 0.00 3.74
3949 4351 8.723942 TGAGATAAGACCTTAAGATGAAAAGC 57.276 34.615 3.36 0.00 0.00 3.51
3954 4356 7.406031 ACGTTGAGATAAGACCTTAAGATGA 57.594 36.000 3.36 0.00 0.00 2.92
3957 4359 6.014840 ACCAACGTTGAGATAAGACCTTAAGA 60.015 38.462 29.35 0.00 0.00 2.10
3959 4361 5.929992 CACCAACGTTGAGATAAGACCTTAA 59.070 40.000 29.35 0.00 0.00 1.85
3961 4363 4.039973 TCACCAACGTTGAGATAAGACCTT 59.960 41.667 29.35 0.00 0.00 3.50
3963 4365 3.921677 TCACCAACGTTGAGATAAGACC 58.078 45.455 29.35 0.00 0.00 3.85
3965 4367 4.862574 CGATTCACCAACGTTGAGATAAGA 59.137 41.667 29.35 13.57 0.00 2.10
3967 4369 4.562082 ACGATTCACCAACGTTGAGATAA 58.438 39.130 29.35 16.73 36.91 1.75
3970 4372 2.519377 ACGATTCACCAACGTTGAGA 57.481 45.000 29.35 21.91 36.91 3.27
3975 4377 1.670791 ACCAAACGATTCACCAACGT 58.329 45.000 0.00 0.00 41.97 3.99
3976 4378 2.766970 AACCAAACGATTCACCAACG 57.233 45.000 0.00 0.00 0.00 4.10
3980 4382 1.681825 GCGAAACCAAACGATTCACC 58.318 50.000 0.00 0.00 0.00 4.02
3981 4383 1.314581 CGCGAAACCAAACGATTCAC 58.685 50.000 0.00 0.00 0.00 3.18
3982 4384 0.236187 CCGCGAAACCAAACGATTCA 59.764 50.000 8.23 0.00 0.00 2.57
3985 4387 0.515564 CTTCCGCGAAACCAAACGAT 59.484 50.000 8.23 0.00 0.00 3.73
3988 4390 2.699251 AATCTTCCGCGAAACCAAAC 57.301 45.000 8.23 0.00 0.00 2.93
4002 4404 1.250840 GGTTGCAGCCCGGAAATCTT 61.251 55.000 8.70 0.00 0.00 2.40
4003 4405 1.678970 GGTTGCAGCCCGGAAATCT 60.679 57.895 8.70 0.00 0.00 2.40
4004 4406 1.657751 GAGGTTGCAGCCCGGAAATC 61.658 60.000 16.95 2.01 0.00 2.17
4005 4407 1.678970 GAGGTTGCAGCCCGGAAAT 60.679 57.895 16.95 0.00 0.00 2.17
4006 4408 2.282180 GAGGTTGCAGCCCGGAAA 60.282 61.111 16.95 0.00 0.00 3.13
4007 4409 3.551496 CTGAGGTTGCAGCCCGGAA 62.551 63.158 16.95 0.00 0.00 4.30
4021 4423 1.979155 TGGAGTGACCTCGCCTGAG 60.979 63.158 0.00 0.00 42.18 3.35
4024 4426 2.203640 TGTGGAGTGACCTCGCCT 60.204 61.111 0.00 0.00 38.70 5.52
4108 4510 0.107703 TGCGGATGTCCAAGACCATC 60.108 55.000 0.00 0.00 35.14 3.51
4109 4511 0.327924 TTGCGGATGTCCAAGACCAT 59.672 50.000 0.00 0.00 35.14 3.55
4120 4522 1.805254 CTTCTTGGCCTTGCGGATG 59.195 57.895 3.32 0.00 0.00 3.51
4162 4572 4.115199 GAGGGGCCTTGCGGATGT 62.115 66.667 0.84 0.00 0.00 3.06
4197 4607 4.130286 ACAAAATGAAGCACGGGAAAAA 57.870 36.364 0.00 0.00 0.00 1.94
4199 4609 3.118956 ACAACAAAATGAAGCACGGGAAA 60.119 39.130 0.00 0.00 0.00 3.13
4201 4611 2.028130 ACAACAAAATGAAGCACGGGA 58.972 42.857 0.00 0.00 0.00 5.14
4202 4612 2.507339 ACAACAAAATGAAGCACGGG 57.493 45.000 0.00 0.00 0.00 5.28
4203 4613 3.443037 TCAACAACAAAATGAAGCACGG 58.557 40.909 0.00 0.00 0.00 4.94
4204 4614 4.104776 ACTCAACAACAAAATGAAGCACG 58.895 39.130 0.00 0.00 0.00 5.34
4471 4895 5.012046 ACTCACACACAGAAGATATGTTCCA 59.988 40.000 8.89 0.00 0.00 3.53
4564 4988 3.871775 CTTGCAAAGCATGAACCGT 57.128 47.368 0.00 0.00 38.76 4.83
4704 5128 1.392589 CAGAGCACCACAACACCTTT 58.607 50.000 0.00 0.00 0.00 3.11
4705 5129 1.103398 GCAGAGCACCACAACACCTT 61.103 55.000 0.00 0.00 0.00 3.50
4754 5178 7.114866 ACACATGCATTATTCATTGGAATGA 57.885 32.000 0.00 0.00 43.47 2.57
4959 5383 5.693814 CCGAGGAAGTCTTTTGAATTTCAG 58.306 41.667 0.00 0.00 36.82 3.02
4966 5390 2.631160 TTGCCGAGGAAGTCTTTTGA 57.369 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.