Multiple sequence alignment - TraesCS1D01G021300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G021300 chr1D 100.000 2801 0 0 1 2801 9092364 9089564 0.000000e+00 5173
1 TraesCS1D01G021300 chr1D 89.578 758 72 3 999 1751 9328396 9327641 0.000000e+00 955
2 TraesCS1D01G021300 chr1D 94.322 317 15 1 2488 2801 9327641 9327325 1.510000e-132 483
3 TraesCS1D01G021300 chr1B 92.261 1809 129 7 1000 2801 13039604 13041408 0.000000e+00 2555
4 TraesCS1D01G021300 chr1B 84.178 1283 167 22 1082 2359 12634894 12636145 0.000000e+00 1212
5 TraesCS1D01G021300 chr1B 84.084 1244 178 19 819 2054 13391691 13390460 0.000000e+00 1182
6 TraesCS1D01G021300 chr1B 83.923 1244 180 19 819 2054 13417403 13416172 0.000000e+00 1171
7 TraesCS1D01G021300 chr1B 84.000 1025 142 19 1016 2031 12432844 12431833 0.000000e+00 965
8 TraesCS1D01G021300 chr1B 81.601 1174 194 20 871 2035 12834655 12833495 0.000000e+00 952
9 TraesCS1D01G021300 chr1B 77.683 820 131 37 858 1662 12816774 12815992 1.180000e-123 453
10 TraesCS1D01G021300 chr1B 83.102 361 38 16 78 432 13368016 13367673 9.750000e-80 307
11 TraesCS1D01G021300 chr1B 83.102 361 38 16 78 432 13392025 13391682 9.750000e-80 307
12 TraesCS1D01G021300 chr1B 83.102 361 38 16 78 432 13417737 13417394 9.750000e-80 307
13 TraesCS1D01G021300 chr1A 84.384 1063 145 19 1000 2054 10474293 10473244 0.000000e+00 1024
14 TraesCS1D01G021300 chr1A 74.724 633 97 40 2171 2763 10473215 10472606 1.010000e-54 224
15 TraesCS1D01G021300 chr2D 95.801 381 7 6 446 819 427533920 427534298 8.580000e-170 606
16 TraesCS1D01G021300 chr2D 93.924 395 13 8 433 819 427536117 427535726 1.120000e-163 586
17 TraesCS1D01G021300 chr2D 94.709 378 16 3 446 819 98265936 98265559 4.020000e-163 584
18 TraesCS1D01G021300 chr4D 96.000 375 10 4 446 819 440446395 440446765 3.090000e-169 604
19 TraesCS1D01G021300 chr5D 95.538 381 10 5 446 819 478730402 478730022 1.110000e-168 603
20 TraesCS1D01G021300 chr5D 94.195 379 15 6 446 821 239040899 239040525 3.130000e-159 571
21 TraesCS1D01G021300 chr7D 95.479 376 14 3 446 819 109792675 109792301 5.160000e-167 597
22 TraesCS1D01G021300 chr7D 94.778 383 13 5 446 823 25071786 25071406 8.640000e-165 590
23 TraesCS1D01G021300 chrUn 94.430 377 13 5 446 819 11222505 11222876 8.700000e-160 573
24 TraesCS1D01G021300 chrUn 79.195 745 138 17 1318 2054 439715606 439714871 4.170000e-138 501


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G021300 chr1D 9089564 9092364 2800 True 5173.0 5173 100.0000 1 2801 1 chr1D.!!$R1 2800
1 TraesCS1D01G021300 chr1D 9327325 9328396 1071 True 719.0 955 91.9500 999 2801 2 chr1D.!!$R2 1802
2 TraesCS1D01G021300 chr1B 13039604 13041408 1804 False 2555.0 2555 92.2610 1000 2801 1 chr1B.!!$F2 1801
3 TraesCS1D01G021300 chr1B 12634894 12636145 1251 False 1212.0 1212 84.1780 1082 2359 1 chr1B.!!$F1 1277
4 TraesCS1D01G021300 chr1B 12431833 12432844 1011 True 965.0 965 84.0000 1016 2031 1 chr1B.!!$R1 1015
5 TraesCS1D01G021300 chr1B 12833495 12834655 1160 True 952.0 952 81.6010 871 2035 1 chr1B.!!$R3 1164
6 TraesCS1D01G021300 chr1B 13390460 13392025 1565 True 744.5 1182 83.5930 78 2054 2 chr1B.!!$R5 1976
7 TraesCS1D01G021300 chr1B 13416172 13417737 1565 True 739.0 1171 83.5125 78 2054 2 chr1B.!!$R6 1976
8 TraesCS1D01G021300 chr1B 12815992 12816774 782 True 453.0 453 77.6830 858 1662 1 chr1B.!!$R2 804
9 TraesCS1D01G021300 chr1A 10472606 10474293 1687 True 624.0 1024 79.5540 1000 2763 2 chr1A.!!$R1 1763
10 TraesCS1D01G021300 chrUn 439714871 439715606 735 True 501.0 501 79.1950 1318 2054 1 chrUn.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 671 0.03759 TTGCCACGCCTTACAGGAAT 59.962 50.0 0.0 0.0 37.67 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1869 2.321719 TGGGAAGCAACTTTTAACCCC 58.678 47.619 0.0 0.0 35.48 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.172352 TCTGCTTACTCAGAATCCTAATAGAC 57.828 38.462 0.00 0.00 39.89 2.59
26 27 7.780271 TCTGCTTACTCAGAATCCTAATAGACA 59.220 37.037 0.00 0.00 39.89 3.41
27 28 8.306313 TGCTTACTCAGAATCCTAATAGACAA 57.694 34.615 0.00 0.00 0.00 3.18
28 29 8.198109 TGCTTACTCAGAATCCTAATAGACAAC 58.802 37.037 0.00 0.00 0.00 3.32
29 30 8.417884 GCTTACTCAGAATCCTAATAGACAACT 58.582 37.037 0.00 0.00 0.00 3.16
30 31 9.743057 CTTACTCAGAATCCTAATAGACAACTG 57.257 37.037 0.00 0.00 0.00 3.16
31 32 7.118496 ACTCAGAATCCTAATAGACAACTGG 57.882 40.000 0.00 0.00 0.00 4.00
32 33 5.918608 TCAGAATCCTAATAGACAACTGGC 58.081 41.667 0.00 0.00 0.00 4.85
33 34 5.425217 TCAGAATCCTAATAGACAACTGGCA 59.575 40.000 0.00 0.00 0.00 4.92
34 35 6.100279 TCAGAATCCTAATAGACAACTGGCAT 59.900 38.462 0.00 0.00 0.00 4.40
35 36 6.204301 CAGAATCCTAATAGACAACTGGCATG 59.796 42.308 0.00 0.00 0.00 4.06
36 37 3.808728 TCCTAATAGACAACTGGCATGC 58.191 45.455 9.90 9.90 0.00 4.06
37 38 3.199727 TCCTAATAGACAACTGGCATGCA 59.800 43.478 21.36 4.79 0.00 3.96
38 39 3.313526 CCTAATAGACAACTGGCATGCAC 59.686 47.826 21.36 9.64 0.00 4.57
39 40 1.755179 ATAGACAACTGGCATGCACC 58.245 50.000 21.36 3.15 0.00 5.01
40 41 0.692476 TAGACAACTGGCATGCACCT 59.308 50.000 21.36 7.37 0.00 4.00
41 42 0.892358 AGACAACTGGCATGCACCTG 60.892 55.000 21.36 12.82 34.95 4.00
42 43 1.152694 ACAACTGGCATGCACCTGT 60.153 52.632 21.36 13.47 43.05 4.00
43 44 4.605064 AACTGGCATGCACCTGTT 57.395 50.000 21.36 15.49 44.33 3.16
44 45 0.038892 CAACTGGCATGCACCTGTTC 60.039 55.000 21.36 0.00 45.56 3.18
45 46 1.181098 AACTGGCATGCACCTGTTCC 61.181 55.000 21.36 0.00 45.56 3.62
46 47 2.672651 TGGCATGCACCTGTTCCG 60.673 61.111 21.36 0.00 0.00 4.30
47 48 2.359850 GGCATGCACCTGTTCCGA 60.360 61.111 21.36 0.00 0.00 4.55
48 49 1.750399 GGCATGCACCTGTTCCGAT 60.750 57.895 21.36 0.00 0.00 4.18
49 50 1.718757 GGCATGCACCTGTTCCGATC 61.719 60.000 21.36 0.00 0.00 3.69
50 51 0.745845 GCATGCACCTGTTCCGATCT 60.746 55.000 14.21 0.00 0.00 2.75
51 52 1.473257 GCATGCACCTGTTCCGATCTA 60.473 52.381 14.21 0.00 0.00 1.98
52 53 2.477825 CATGCACCTGTTCCGATCTAG 58.522 52.381 0.00 0.00 0.00 2.43
53 54 0.175760 TGCACCTGTTCCGATCTAGC 59.824 55.000 0.00 0.00 0.00 3.42
54 55 0.175760 GCACCTGTTCCGATCTAGCA 59.824 55.000 0.00 0.00 0.00 3.49
55 56 1.405526 GCACCTGTTCCGATCTAGCAA 60.406 52.381 0.00 0.00 0.00 3.91
56 57 2.935238 GCACCTGTTCCGATCTAGCAAA 60.935 50.000 0.00 0.00 0.00 3.68
57 58 3.334691 CACCTGTTCCGATCTAGCAAAA 58.665 45.455 0.00 0.00 0.00 2.44
58 59 3.372206 CACCTGTTCCGATCTAGCAAAAG 59.628 47.826 0.00 0.00 0.00 2.27
59 60 2.352960 CCTGTTCCGATCTAGCAAAAGC 59.647 50.000 0.00 0.00 0.00 3.51
60 61 3.002791 CTGTTCCGATCTAGCAAAAGCA 58.997 45.455 0.00 0.00 0.00 3.91
61 62 3.002791 TGTTCCGATCTAGCAAAAGCAG 58.997 45.455 0.00 0.00 0.00 4.24
62 63 3.262420 GTTCCGATCTAGCAAAAGCAGA 58.738 45.455 0.00 0.00 0.00 4.26
63 64 3.827008 TCCGATCTAGCAAAAGCAGAT 57.173 42.857 0.00 0.00 0.00 2.90
64 65 4.142609 TCCGATCTAGCAAAAGCAGATT 57.857 40.909 0.00 0.00 0.00 2.40
65 66 4.517285 TCCGATCTAGCAAAAGCAGATTT 58.483 39.130 0.00 0.00 0.00 2.17
66 67 5.670485 TCCGATCTAGCAAAAGCAGATTTA 58.330 37.500 0.00 0.00 0.00 1.40
67 68 5.523916 TCCGATCTAGCAAAAGCAGATTTAC 59.476 40.000 0.00 0.00 0.00 2.01
68 69 5.294306 CCGATCTAGCAAAAGCAGATTTACA 59.706 40.000 0.00 0.00 0.00 2.41
69 70 6.417327 CGATCTAGCAAAAGCAGATTTACAG 58.583 40.000 0.00 0.00 0.00 2.74
70 71 5.551760 TCTAGCAAAAGCAGATTTACAGC 57.448 39.130 0.00 0.00 0.00 4.40
71 72 3.582714 AGCAAAAGCAGATTTACAGCC 57.417 42.857 0.00 0.00 0.00 4.85
72 73 2.892852 AGCAAAAGCAGATTTACAGCCA 59.107 40.909 0.00 0.00 0.00 4.75
73 74 3.321682 AGCAAAAGCAGATTTACAGCCAA 59.678 39.130 0.00 0.00 0.00 4.52
74 75 3.676646 GCAAAAGCAGATTTACAGCCAAG 59.323 43.478 0.00 0.00 0.00 3.61
75 76 4.240096 CAAAAGCAGATTTACAGCCAAGG 58.760 43.478 0.00 0.00 0.00 3.61
76 77 3.439857 AAGCAGATTTACAGCCAAGGA 57.560 42.857 0.00 0.00 0.00 3.36
81 82 4.201990 GCAGATTTACAGCCAAGGAGATTG 60.202 45.833 0.00 0.00 38.74 2.67
95 96 6.183360 CCAAGGAGATTGTGAGCTTTGAATAG 60.183 42.308 0.00 0.00 37.17 1.73
101 102 5.512753 TTGTGAGCTTTGAATAGTTTGCA 57.487 34.783 0.00 0.00 0.00 4.08
106 107 6.744537 GTGAGCTTTGAATAGTTTGCACATAG 59.255 38.462 0.00 0.00 0.00 2.23
119 120 2.723020 GCACATAGCCTGCTTCGTAGC 61.723 57.143 7.14 7.14 42.05 3.58
189 190 7.440523 AACATCACCACTTAAAGATTCAGTC 57.559 36.000 0.00 0.00 0.00 3.51
198 199 1.813513 AAGATTCAGTCAGTTGGGCG 58.186 50.000 0.00 0.00 0.00 6.13
201 202 0.981183 ATTCAGTCAGTTGGGCGGTA 59.019 50.000 0.00 0.00 0.00 4.02
206 207 2.167693 CAGTCAGTTGGGCGGTATAGAA 59.832 50.000 0.00 0.00 0.00 2.10
219 220 5.643777 GGCGGTATAGAATGATTATGCAAGT 59.356 40.000 0.00 0.00 0.00 3.16
243 244 4.641989 GCCATATCACAAACCTTCATCAGT 59.358 41.667 0.00 0.00 0.00 3.41
250 251 6.353323 TCACAAACCTTCATCAGTTGAGTAA 58.647 36.000 0.00 0.00 35.27 2.24
251 252 6.260050 TCACAAACCTTCATCAGTTGAGTAAC 59.740 38.462 0.00 0.00 35.27 2.50
253 254 6.828785 ACAAACCTTCATCAGTTGAGTAACTT 59.171 34.615 0.00 0.00 44.57 2.66
254 255 6.867662 AACCTTCATCAGTTGAGTAACTTG 57.132 37.500 0.00 0.00 44.57 3.16
255 256 4.757149 ACCTTCATCAGTTGAGTAACTTGC 59.243 41.667 0.00 0.00 44.57 4.01
256 257 4.143030 CCTTCATCAGTTGAGTAACTTGCG 60.143 45.833 0.00 0.00 44.57 4.85
257 258 4.251543 TCATCAGTTGAGTAACTTGCGA 57.748 40.909 0.00 0.00 44.57 5.10
258 259 3.987868 TCATCAGTTGAGTAACTTGCGAC 59.012 43.478 0.00 0.00 44.57 5.19
259 260 3.728076 TCAGTTGAGTAACTTGCGACT 57.272 42.857 0.00 0.00 44.57 4.18
260 261 3.381045 TCAGTTGAGTAACTTGCGACTG 58.619 45.455 0.00 0.00 44.57 3.51
261 262 3.123804 CAGTTGAGTAACTTGCGACTGT 58.876 45.455 0.00 0.00 44.57 3.55
262 263 3.060272 CAGTTGAGTAACTTGCGACTGTG 60.060 47.826 0.00 0.00 44.57 3.66
263 264 1.497991 TGAGTAACTTGCGACTGTGC 58.502 50.000 0.00 0.00 0.00 4.57
265 266 1.721926 GAGTAACTTGCGACTGTGCTC 59.278 52.381 0.00 0.00 35.36 4.26
266 267 1.341531 AGTAACTTGCGACTGTGCTCT 59.658 47.619 0.00 0.00 35.36 4.09
267 268 2.135933 GTAACTTGCGACTGTGCTCTT 58.864 47.619 0.00 0.00 35.36 2.85
268 269 1.668419 AACTTGCGACTGTGCTCTTT 58.332 45.000 0.00 0.00 35.36 2.52
269 270 1.668419 ACTTGCGACTGTGCTCTTTT 58.332 45.000 0.00 0.00 35.36 2.27
270 271 2.833794 ACTTGCGACTGTGCTCTTTTA 58.166 42.857 0.00 0.00 35.36 1.52
271 272 2.802816 ACTTGCGACTGTGCTCTTTTAG 59.197 45.455 0.00 0.00 35.36 1.85
272 273 2.812358 TGCGACTGTGCTCTTTTAGA 57.188 45.000 0.00 0.00 35.36 2.10
303 304 2.401766 GCTTCATGTGAGGCACCCG 61.402 63.158 11.64 0.00 45.20 5.28
305 306 1.003839 TTCATGTGAGGCACCCGAC 60.004 57.895 0.00 0.00 32.73 4.79
308 309 0.177836 CATGTGAGGCACCCGACATA 59.822 55.000 0.00 0.00 32.40 2.29
309 310 1.131638 ATGTGAGGCACCCGACATAT 58.868 50.000 0.00 0.00 32.40 1.78
310 311 1.783071 TGTGAGGCACCCGACATATA 58.217 50.000 0.00 0.00 32.73 0.86
311 312 1.411246 TGTGAGGCACCCGACATATAC 59.589 52.381 0.00 0.00 32.73 1.47
312 313 0.671796 TGAGGCACCCGACATATACG 59.328 55.000 0.00 0.00 0.00 3.06
313 314 0.672342 GAGGCACCCGACATATACGT 59.328 55.000 0.00 0.00 0.00 3.57
314 315 0.672342 AGGCACCCGACATATACGTC 59.328 55.000 0.00 0.00 0.00 4.34
324 325 1.752498 ACATATACGTCGTCCCAAGCA 59.248 47.619 0.00 0.00 0.00 3.91
328 329 2.172851 TACGTCGTCCCAAGCAAAAT 57.827 45.000 0.00 0.00 0.00 1.82
332 333 2.418628 CGTCGTCCCAAGCAAAATATGT 59.581 45.455 0.00 0.00 0.00 2.29
340 341 7.706179 CGTCCCAAGCAAAATATGTAATTTCAT 59.294 33.333 2.93 2.93 0.00 2.57
360 363 0.180642 ATGCATCTCTCTGTGGCCTG 59.819 55.000 3.32 0.00 0.00 4.85
364 367 2.323599 CATCTCTCTGTGGCCTGGATA 58.676 52.381 3.32 0.00 0.00 2.59
365 368 1.781786 TCTCTCTGTGGCCTGGATAC 58.218 55.000 3.32 0.00 0.00 2.24
395 398 1.133025 GCACACATGCCATAGTTGGAC 59.867 52.381 0.00 0.00 46.92 4.02
396 399 1.745087 CACACATGCCATAGTTGGACC 59.255 52.381 0.00 0.00 46.92 4.46
397 400 1.635487 ACACATGCCATAGTTGGACCT 59.365 47.619 0.00 0.00 46.92 3.85
398 401 2.019249 CACATGCCATAGTTGGACCTG 58.981 52.381 0.00 0.00 46.92 4.00
425 428 9.816787 TTCAACTGAACTTTAATATTAGGGGTT 57.183 29.630 0.00 3.11 0.00 4.11
426 429 9.457436 TCAACTGAACTTTAATATTAGGGGTTC 57.543 33.333 19.21 19.21 34.20 3.62
427 430 8.683615 CAACTGAACTTTAATATTAGGGGTTCC 58.316 37.037 21.11 12.04 33.11 3.62
428 431 7.935405 ACTGAACTTTAATATTAGGGGTTCCA 58.065 34.615 21.11 14.19 33.11 3.53
429 432 7.832685 ACTGAACTTTAATATTAGGGGTTCCAC 59.167 37.037 21.11 9.10 33.11 4.02
430 433 7.935405 TGAACTTTAATATTAGGGGTTCCACT 58.065 34.615 21.11 0.00 33.11 4.00
431 434 7.832187 TGAACTTTAATATTAGGGGTTCCACTG 59.168 37.037 21.11 0.00 33.11 3.66
432 435 6.669631 ACTTTAATATTAGGGGTTCCACTGG 58.330 40.000 3.59 0.00 34.83 4.00
433 436 5.656549 TTAATATTAGGGGTTCCACTGGG 57.343 43.478 3.59 0.00 34.83 4.45
434 437 2.974285 TATTAGGGGTTCCACTGGGA 57.026 50.000 3.59 0.00 43.03 4.37
435 438 1.296002 ATTAGGGGTTCCACTGGGAC 58.704 55.000 3.59 0.00 44.89 4.46
436 439 1.196104 TTAGGGGTTCCACTGGGACG 61.196 60.000 3.59 0.00 44.89 4.79
437 440 4.717313 GGGGTTCCACTGGGACGC 62.717 72.222 14.19 14.19 44.89 5.19
440 443 3.998672 GTTCCACTGGGACGCGGA 61.999 66.667 12.47 0.00 44.89 5.54
441 444 3.691342 TTCCACTGGGACGCGGAG 61.691 66.667 12.47 2.86 44.89 4.63
442 445 4.988716 TCCACTGGGACGCGGAGT 62.989 66.667 12.47 3.58 38.64 3.85
443 446 4.003788 CCACTGGGACGCGGAGTT 62.004 66.667 12.47 0.00 35.59 3.01
444 447 2.030562 CACTGGGACGCGGAGTTT 59.969 61.111 12.47 0.00 0.00 2.66
445 448 1.597027 CACTGGGACGCGGAGTTTT 60.597 57.895 12.47 0.00 0.00 2.43
446 449 1.597027 ACTGGGACGCGGAGTTTTG 60.597 57.895 12.47 0.00 0.00 2.44
447 450 1.301401 CTGGGACGCGGAGTTTTGA 60.301 57.895 12.47 0.00 0.00 2.69
448 451 1.291877 CTGGGACGCGGAGTTTTGAG 61.292 60.000 12.47 0.00 0.00 3.02
449 452 1.005394 GGGACGCGGAGTTTTGAGA 60.005 57.895 12.47 0.00 0.00 3.27
450 453 0.391263 GGGACGCGGAGTTTTGAGAT 60.391 55.000 12.47 0.00 0.00 2.75
451 454 1.000145 GGACGCGGAGTTTTGAGATC 59.000 55.000 12.47 0.00 0.00 2.75
452 455 0.640768 GACGCGGAGTTTTGAGATCG 59.359 55.000 12.47 0.00 0.00 3.69
453 456 0.736325 ACGCGGAGTTTTGAGATCGG 60.736 55.000 12.47 0.00 0.00 4.18
454 457 1.421410 CGCGGAGTTTTGAGATCGGG 61.421 60.000 0.00 0.00 0.00 5.14
455 458 0.391263 GCGGAGTTTTGAGATCGGGT 60.391 55.000 0.00 0.00 0.00 5.28
456 459 1.359848 CGGAGTTTTGAGATCGGGTG 58.640 55.000 0.00 0.00 0.00 4.61
457 460 1.067142 CGGAGTTTTGAGATCGGGTGA 60.067 52.381 0.00 0.00 0.00 4.02
458 461 2.611971 CGGAGTTTTGAGATCGGGTGAA 60.612 50.000 0.00 0.00 0.00 3.18
459 462 2.742589 GGAGTTTTGAGATCGGGTGAAC 59.257 50.000 0.00 0.00 0.00 3.18
460 463 3.399330 GAGTTTTGAGATCGGGTGAACA 58.601 45.455 0.00 0.00 0.00 3.18
461 464 3.403038 AGTTTTGAGATCGGGTGAACAG 58.597 45.455 0.00 0.00 0.00 3.16
462 465 3.139077 GTTTTGAGATCGGGTGAACAGT 58.861 45.455 0.00 0.00 0.00 3.55
463 466 4.039973 AGTTTTGAGATCGGGTGAACAGTA 59.960 41.667 0.00 0.00 0.00 2.74
464 467 4.610605 TTTGAGATCGGGTGAACAGTAA 57.389 40.909 0.00 0.00 0.00 2.24
465 468 4.610605 TTGAGATCGGGTGAACAGTAAA 57.389 40.909 0.00 0.00 0.00 2.01
466 469 4.610605 TGAGATCGGGTGAACAGTAAAA 57.389 40.909 0.00 0.00 0.00 1.52
467 470 5.160607 TGAGATCGGGTGAACAGTAAAAT 57.839 39.130 0.00 0.00 0.00 1.82
468 471 5.175859 TGAGATCGGGTGAACAGTAAAATC 58.824 41.667 0.00 0.00 0.00 2.17
469 472 5.160607 AGATCGGGTGAACAGTAAAATCA 57.839 39.130 0.00 0.00 0.00 2.57
470 473 5.556915 AGATCGGGTGAACAGTAAAATCAA 58.443 37.500 0.00 0.00 0.00 2.57
471 474 6.001460 AGATCGGGTGAACAGTAAAATCAAA 58.999 36.000 0.00 0.00 0.00 2.69
472 475 6.488683 AGATCGGGTGAACAGTAAAATCAAAA 59.511 34.615 0.00 0.00 0.00 2.44
473 476 5.823353 TCGGGTGAACAGTAAAATCAAAAC 58.177 37.500 0.00 0.00 0.00 2.43
474 477 5.591067 TCGGGTGAACAGTAAAATCAAAACT 59.409 36.000 0.00 0.00 0.00 2.66
475 478 6.766944 TCGGGTGAACAGTAAAATCAAAACTA 59.233 34.615 0.00 0.00 0.00 2.24
476 479 7.282675 TCGGGTGAACAGTAAAATCAAAACTAA 59.717 33.333 0.00 0.00 0.00 2.24
477 480 7.916450 CGGGTGAACAGTAAAATCAAAACTAAA 59.084 33.333 0.00 0.00 0.00 1.85
478 481 9.758651 GGGTGAACAGTAAAATCAAAACTAAAT 57.241 29.630 0.00 0.00 0.00 1.40
528 531 8.614469 TTTTTGGAGAAACATTGACAAAAGTT 57.386 26.923 0.00 0.00 38.52 2.66
529 532 7.826260 TTTGGAGAAACATTGACAAAAGTTC 57.174 32.000 9.09 5.33 0.00 3.01
530 533 6.773976 TGGAGAAACATTGACAAAAGTTCT 57.226 33.333 9.09 9.17 0.00 3.01
531 534 7.873719 TGGAGAAACATTGACAAAAGTTCTA 57.126 32.000 9.09 0.00 0.00 2.10
532 535 8.287439 TGGAGAAACATTGACAAAAGTTCTAA 57.713 30.769 9.09 1.59 0.00 2.10
533 536 8.405531 TGGAGAAACATTGACAAAAGTTCTAAG 58.594 33.333 9.09 0.00 0.00 2.18
534 537 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
535 538 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
536 539 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
537 540 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
538 541 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
539 542 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
540 543 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
541 544 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
542 545 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
543 546 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
544 547 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
545 548 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
546 549 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
547 550 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
548 551 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
549 552 5.687285 AGTTCTAAGTGCTTGCAAAAATTCG 59.313 36.000 0.00 0.00 0.00 3.34
550 553 3.980775 TCTAAGTGCTTGCAAAAATTCGC 59.019 39.130 0.00 0.00 0.00 4.70
551 554 1.501169 AGTGCTTGCAAAAATTCGCC 58.499 45.000 0.00 0.00 0.00 5.54
552 555 1.202510 AGTGCTTGCAAAAATTCGCCA 60.203 42.857 0.00 0.00 0.00 5.69
553 556 1.799994 GTGCTTGCAAAAATTCGCCAT 59.200 42.857 0.00 0.00 0.00 4.40
554 557 1.799403 TGCTTGCAAAAATTCGCCATG 59.201 42.857 0.00 0.00 0.00 3.66
555 558 2.067766 GCTTGCAAAAATTCGCCATGA 58.932 42.857 0.00 0.00 0.00 3.07
556 559 2.479656 GCTTGCAAAAATTCGCCATGAA 59.520 40.909 0.00 0.00 41.81 2.57
557 560 3.059051 GCTTGCAAAAATTCGCCATGAAA 60.059 39.130 0.00 0.00 40.71 2.69
558 561 4.378666 GCTTGCAAAAATTCGCCATGAAAT 60.379 37.500 0.00 0.00 40.71 2.17
559 562 4.925061 TGCAAAAATTCGCCATGAAATC 57.075 36.364 0.00 0.00 40.71 2.17
560 563 4.313282 TGCAAAAATTCGCCATGAAATCA 58.687 34.783 0.00 0.00 40.71 2.57
561 564 4.152045 TGCAAAAATTCGCCATGAAATCAC 59.848 37.500 0.00 0.00 40.71 3.06
562 565 4.152045 GCAAAAATTCGCCATGAAATCACA 59.848 37.500 0.00 0.00 40.71 3.58
563 566 5.163834 GCAAAAATTCGCCATGAAATCACAT 60.164 36.000 0.00 0.00 40.71 3.21
564 567 6.621164 GCAAAAATTCGCCATGAAATCACATT 60.621 34.615 0.00 0.00 40.71 2.71
565 568 6.651755 AAAATTCGCCATGAAATCACATTC 57.348 33.333 0.00 0.00 40.71 2.67
566 569 3.781079 TTCGCCATGAAATCACATTCC 57.219 42.857 0.00 0.00 32.37 3.01
567 570 3.003394 TCGCCATGAAATCACATTCCT 57.997 42.857 0.00 0.00 0.00 3.36
568 571 4.149511 TCGCCATGAAATCACATTCCTA 57.850 40.909 0.00 0.00 0.00 2.94
569 572 4.129380 TCGCCATGAAATCACATTCCTAG 58.871 43.478 0.00 0.00 0.00 3.02
570 573 4.129380 CGCCATGAAATCACATTCCTAGA 58.871 43.478 0.00 0.00 0.00 2.43
571 574 4.576053 CGCCATGAAATCACATTCCTAGAA 59.424 41.667 0.00 0.00 0.00 2.10
572 575 5.277683 CGCCATGAAATCACATTCCTAGAAG 60.278 44.000 0.00 0.00 0.00 2.85
573 576 5.009410 GCCATGAAATCACATTCCTAGAAGG 59.991 44.000 0.00 0.00 36.46 3.46
574 577 5.009410 CCATGAAATCACATTCCTAGAAGGC 59.991 44.000 0.00 0.00 34.61 4.35
575 578 5.178096 TGAAATCACATTCCTAGAAGGCA 57.822 39.130 0.00 0.00 34.61 4.75
576 579 5.759059 TGAAATCACATTCCTAGAAGGCAT 58.241 37.500 0.00 0.00 34.61 4.40
577 580 5.591472 TGAAATCACATTCCTAGAAGGCATG 59.409 40.000 4.33 4.33 43.38 4.06
578 581 3.565764 TCACATTCCTAGAAGGCATGG 57.434 47.619 9.83 0.81 42.29 3.66
579 582 1.952296 CACATTCCTAGAAGGCATGGC 59.048 52.381 12.14 12.14 42.29 4.40
580 583 1.565759 ACATTCCTAGAAGGCATGGCA 59.434 47.619 22.64 0.00 42.29 4.92
581 584 2.025037 ACATTCCTAGAAGGCATGGCAA 60.025 45.455 22.64 5.18 42.29 4.52
582 585 2.897271 TTCCTAGAAGGCATGGCAAA 57.103 45.000 22.64 2.44 34.61 3.68
583 586 2.897271 TCCTAGAAGGCATGGCAAAA 57.103 45.000 22.64 2.81 34.61 2.44
584 587 3.168035 TCCTAGAAGGCATGGCAAAAA 57.832 42.857 22.64 3.19 34.61 1.94
618 621 9.832445 AACAGTACTCTGAAAAATCTACTTTCA 57.168 29.630 0.00 0.00 43.76 2.69
619 622 9.832445 ACAGTACTCTGAAAAATCTACTTTCAA 57.168 29.630 0.00 0.00 41.10 2.69
624 627 8.686334 ACTCTGAAAAATCTACTTTCAAAAGCA 58.314 29.630 2.43 0.00 41.10 3.91
625 628 9.688592 CTCTGAAAAATCTACTTTCAAAAGCAT 57.311 29.630 2.43 0.00 41.10 3.79
642 645 6.930667 AAAGCATTTTGAAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
643 646 5.917541 AGCATTTTGAAGCACTGAATTTG 57.082 34.783 0.00 0.00 0.00 2.32
644 647 5.362263 AGCATTTTGAAGCACTGAATTTGT 58.638 33.333 0.00 0.00 0.00 2.83
645 648 5.818857 AGCATTTTGAAGCACTGAATTTGTT 59.181 32.000 0.00 0.00 0.00 2.83
646 649 6.316890 AGCATTTTGAAGCACTGAATTTGTTT 59.683 30.769 0.00 0.00 0.00 2.83
647 650 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
648 651 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
665 668 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
666 669 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
667 670 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
668 671 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
669 672 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
670 673 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
671 674 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
672 675 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
673 676 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
674 677 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
675 678 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
676 679 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
677 680 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
678 681 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
679 682 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
680 683 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
681 684 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
682 685 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
683 686 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
684 687 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
685 688 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
686 689 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
687 690 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
688 691 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
689 692 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
690 693 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
691 694 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
692 695 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
693 696 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
694 697 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
695 698 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
696 699 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
697 700 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
698 701 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
699 702 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
700 703 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
701 704 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
702 705 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
703 706 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
704 707 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
705 708 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
706 709 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
707 710 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
708 711 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
709 712 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
710 713 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
711 714 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
712 715 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
713 716 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
714 717 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
715 718 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
716 719 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
717 720 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
718 721 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
719 722 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
720 723 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
721 724 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
722 725 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
785 788 7.532682 TTTTTGATTTTACTGTTCACCAAGC 57.467 32.000 0.00 0.00 0.00 4.01
786 789 6.463995 TTTGATTTTACTGTTCACCAAGCT 57.536 33.333 0.00 0.00 0.00 3.74
787 790 5.689383 TGATTTTACTGTTCACCAAGCTC 57.311 39.130 0.00 0.00 0.00 4.09
788 791 5.129634 TGATTTTACTGTTCACCAAGCTCA 58.870 37.500 0.00 0.00 0.00 4.26
789 792 5.592282 TGATTTTACTGTTCACCAAGCTCAA 59.408 36.000 0.00 0.00 0.00 3.02
790 793 5.906113 TTTTACTGTTCACCAAGCTCAAA 57.094 34.783 0.00 0.00 0.00 2.69
791 794 6.463995 TTTTACTGTTCACCAAGCTCAAAT 57.536 33.333 0.00 0.00 0.00 2.32
792 795 3.996150 ACTGTTCACCAAGCTCAAATG 57.004 42.857 0.00 0.00 0.00 2.32
793 796 3.554934 ACTGTTCACCAAGCTCAAATGA 58.445 40.909 0.00 0.00 0.00 2.57
794 797 3.567164 ACTGTTCACCAAGCTCAAATGAG 59.433 43.478 6.05 6.05 44.75 2.90
812 815 4.079446 CTCGGGAGCAAAAAGGCA 57.921 55.556 0.00 0.00 35.83 4.75
813 816 1.581447 CTCGGGAGCAAAAAGGCAC 59.419 57.895 0.00 0.00 35.83 5.01
830 833 0.307760 CACTTTCGGTTCCACTGCAC 59.692 55.000 0.00 0.00 0.00 4.57
848 851 4.625800 CTAGCACAACTGGGAGCC 57.374 61.111 0.00 0.00 0.00 4.70
850 853 1.195115 CTAGCACAACTGGGAGCCTA 58.805 55.000 0.00 0.00 0.00 3.93
855 858 1.192146 ACAACTGGGAGCCTAGCGAA 61.192 55.000 0.00 0.00 0.00 4.70
901 904 1.336609 GCAAGCAAGCTCCTCCTTTTG 60.337 52.381 0.00 0.00 0.00 2.44
905 908 1.546548 GCAAGCTCCTCCTTTTGGTCT 60.547 52.381 0.00 0.00 41.38 3.85
936 939 1.362768 CTTCTGCATCTACTTGCGCA 58.637 50.000 5.66 5.66 45.77 6.09
937 940 1.733912 CTTCTGCATCTACTTGCGCAA 59.266 47.619 23.48 23.48 45.77 4.85
964 967 2.546899 TGCACTACTACCTCCAACCAT 58.453 47.619 0.00 0.00 0.00 3.55
991 994 2.696187 ACCAATACACACAAACCAACCC 59.304 45.455 0.00 0.00 0.00 4.11
1032 1035 1.891060 GACTGAGCGTTGGCAAGTCG 61.891 60.000 0.00 2.52 41.89 4.18
1051 1054 0.659957 GGTGCTGAATGGAGCGATTC 59.340 55.000 0.00 0.00 42.32 2.52
1116 1119 4.309950 GTCCGGCGTGACCAGGTT 62.310 66.667 14.89 0.00 39.03 3.50
1120 1123 2.943653 GGCGTGACCAGGTTTTCG 59.056 61.111 0.00 0.40 38.86 3.46
1163 1166 1.544314 GCAGGCTTTCCTTGAGTCTGT 60.544 52.381 7.46 0.00 46.07 3.41
1175 1178 1.546029 TGAGTCTGTTCATGACGAGGG 59.454 52.381 0.00 0.00 39.24 4.30
1176 1179 1.819288 GAGTCTGTTCATGACGAGGGA 59.181 52.381 0.00 0.00 39.24 4.20
1310 1313 1.202222 CGTATCCGTCGCAACCTACTT 60.202 52.381 0.00 0.00 0.00 2.24
1378 1381 4.187694 GTTGAGGATGTTAGCCAGAGAAG 58.812 47.826 0.00 0.00 0.00 2.85
1464 1467 4.083324 GCATTACTTCTGCAGCACTGTTTA 60.083 41.667 9.47 0.00 39.46 2.01
1504 1511 5.183904 GGTACATGTCAAGGCAAGAGAAATT 59.816 40.000 0.00 0.00 0.00 1.82
1505 1512 5.130292 ACATGTCAAGGCAAGAGAAATTG 57.870 39.130 0.00 0.00 0.00 2.32
1762 1773 1.408702 CTCTACTGGGAGCAGAGAAGC 59.591 57.143 0.00 0.00 38.46 3.86
1769 1780 1.744741 GAGCAGAGAAGCCAGCACC 60.745 63.158 0.00 0.00 34.23 5.01
1784 1795 0.392729 GCACCAGAGCTTGCTGAGAT 60.393 55.000 0.00 0.00 38.14 2.75
1907 1919 1.722034 TGGGGAGCAGGATCATAGTC 58.278 55.000 0.00 0.00 0.00 2.59
1912 1924 3.172339 GGAGCAGGATCATAGTCTCCAT 58.828 50.000 14.05 0.00 39.75 3.41
1913 1925 3.195396 GGAGCAGGATCATAGTCTCCATC 59.805 52.174 14.05 0.00 39.75 3.51
1917 1929 4.013050 CAGGATCATAGTCTCCATCGCTA 58.987 47.826 0.00 0.00 33.75 4.26
1929 1941 5.744819 GTCTCCATCGCTAAAGTAGAAGTTC 59.255 44.000 0.00 0.00 0.00 3.01
1941 1953 9.871238 CTAAAGTAGAAGTTCCAAGCTTATGTA 57.129 33.333 0.00 0.00 0.00 2.29
1950 1962 3.088532 CCAAGCTTATGTACAGGGCAAA 58.911 45.455 16.14 0.56 0.00 3.68
2022 2036 5.155278 TGCTTTCCACGAGAAGGTAATAA 57.845 39.130 0.00 0.00 35.40 1.40
2130 2144 6.985188 TCATTAGTTCATTACTCAGCAACC 57.015 37.500 0.00 0.00 38.33 3.77
2169 2183 4.614475 TGGGGCATGGTTTACATTCATTA 58.386 39.130 0.00 0.00 37.84 1.90
2232 2246 7.106439 TCATTTGACAATAACCACACAAACT 57.894 32.000 0.00 0.00 31.77 2.66
2233 2247 7.551585 TCATTTGACAATAACCACACAAACTT 58.448 30.769 0.00 0.00 31.77 2.66
2252 2266 8.349983 ACAAACTTGTGAGTACCATTATGTTTC 58.650 33.333 0.00 0.00 40.49 2.78
2386 2403 2.096013 TGTGTGCGACGTTGAAAATTGA 59.904 40.909 7.08 0.00 0.00 2.57
2397 2414 7.216920 ACGTTGAAAATTGAAAGTAAACAGC 57.783 32.000 0.00 0.00 0.00 4.40
2477 2494 6.415702 CATTTTTCAAACAGAATGCACACTG 58.584 36.000 16.96 16.96 42.53 3.66
2530 2565 8.883731 GCTTGTATCTTAGATTGTGCTTTCTTA 58.116 33.333 0.00 0.00 0.00 2.10
2543 2578 2.831526 GCTTTCTTAAGGAAATGGGGCA 59.168 45.455 1.85 0.00 42.25 5.36
2545 2580 4.344104 CTTTCTTAAGGAAATGGGGCAGA 58.656 43.478 1.85 0.00 42.25 4.26
2678 2726 6.015180 ACATGGATTAACATTGCTCACTTGTT 60.015 34.615 0.00 0.00 37.37 2.83
2782 2830 0.105760 TGGTGCCCACTGGTGAAATT 60.106 50.000 1.93 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.898014 TGTCTATTAGGATTCTGAGTAAGCA 57.102 36.000 0.00 0.00 0.00 3.91
3 4 8.417884 AGTTGTCTATTAGGATTCTGAGTAAGC 58.582 37.037 0.00 0.00 0.00 3.09
7 8 6.407525 GCCAGTTGTCTATTAGGATTCTGAGT 60.408 42.308 0.00 0.00 0.00 3.41
9 10 5.425217 TGCCAGTTGTCTATTAGGATTCTGA 59.575 40.000 0.00 0.00 0.00 3.27
10 11 5.674525 TGCCAGTTGTCTATTAGGATTCTG 58.325 41.667 0.00 0.00 0.00 3.02
12 13 5.049129 GCATGCCAGTTGTCTATTAGGATTC 60.049 44.000 6.36 0.00 0.00 2.52
14 15 4.141413 TGCATGCCAGTTGTCTATTAGGAT 60.141 41.667 16.68 0.00 0.00 3.24
15 16 3.199727 TGCATGCCAGTTGTCTATTAGGA 59.800 43.478 16.68 0.00 0.00 2.94
16 17 3.313526 GTGCATGCCAGTTGTCTATTAGG 59.686 47.826 16.68 0.00 0.00 2.69
17 18 3.313526 GGTGCATGCCAGTTGTCTATTAG 59.686 47.826 16.68 0.00 0.00 1.73
18 19 3.054434 AGGTGCATGCCAGTTGTCTATTA 60.054 43.478 16.68 0.00 0.00 0.98
19 20 2.094675 GGTGCATGCCAGTTGTCTATT 58.905 47.619 16.68 0.00 0.00 1.73
20 21 1.283029 AGGTGCATGCCAGTTGTCTAT 59.717 47.619 16.68 0.00 0.00 1.98
21 22 0.692476 AGGTGCATGCCAGTTGTCTA 59.308 50.000 16.68 0.00 0.00 2.59
22 23 0.892358 CAGGTGCATGCCAGTTGTCT 60.892 55.000 16.68 0.00 0.00 3.41
23 24 1.174712 ACAGGTGCATGCCAGTTGTC 61.175 55.000 16.68 0.00 0.00 3.18
24 25 0.756442 AACAGGTGCATGCCAGTTGT 60.756 50.000 16.68 11.46 36.97 3.32
25 26 0.038892 GAACAGGTGCATGCCAGTTG 60.039 55.000 16.68 10.80 38.18 3.16
26 27 1.181098 GGAACAGGTGCATGCCAGTT 61.181 55.000 16.68 13.90 40.28 3.16
27 28 1.604593 GGAACAGGTGCATGCCAGT 60.605 57.895 16.68 5.40 0.00 4.00
28 29 2.693762 CGGAACAGGTGCATGCCAG 61.694 63.158 16.68 4.71 0.00 4.85
29 30 2.482796 ATCGGAACAGGTGCATGCCA 62.483 55.000 16.68 0.00 0.00 4.92
30 31 1.718757 GATCGGAACAGGTGCATGCC 61.719 60.000 16.68 6.42 0.00 4.40
31 32 0.745845 AGATCGGAACAGGTGCATGC 60.746 55.000 11.82 11.82 0.00 4.06
32 33 2.477825 CTAGATCGGAACAGGTGCATG 58.522 52.381 0.00 0.00 0.00 4.06
33 34 1.202580 GCTAGATCGGAACAGGTGCAT 60.203 52.381 0.00 0.00 0.00 3.96
34 35 0.175760 GCTAGATCGGAACAGGTGCA 59.824 55.000 0.00 0.00 0.00 4.57
35 36 0.175760 TGCTAGATCGGAACAGGTGC 59.824 55.000 0.00 0.00 0.00 5.01
36 37 2.672961 TTGCTAGATCGGAACAGGTG 57.327 50.000 0.00 0.00 0.00 4.00
37 38 3.600388 CTTTTGCTAGATCGGAACAGGT 58.400 45.455 0.00 0.00 0.00 4.00
38 39 2.352960 GCTTTTGCTAGATCGGAACAGG 59.647 50.000 0.00 0.00 43.35 4.00
39 40 3.665173 GCTTTTGCTAGATCGGAACAG 57.335 47.619 0.00 0.00 43.35 3.16
53 54 4.022068 TCCTTGGCTGTAAATCTGCTTTTG 60.022 41.667 0.00 0.00 40.19 2.44
54 55 4.151883 TCCTTGGCTGTAAATCTGCTTTT 58.848 39.130 0.00 0.00 40.19 2.27
55 56 3.760684 CTCCTTGGCTGTAAATCTGCTTT 59.239 43.478 0.00 0.00 40.19 3.51
56 57 3.009473 TCTCCTTGGCTGTAAATCTGCTT 59.991 43.478 0.00 0.00 40.19 3.91
57 58 2.573462 TCTCCTTGGCTGTAAATCTGCT 59.427 45.455 0.00 0.00 40.19 4.24
58 59 2.991250 TCTCCTTGGCTGTAAATCTGC 58.009 47.619 0.00 0.00 39.71 4.26
59 60 4.946157 ACAATCTCCTTGGCTGTAAATCTG 59.054 41.667 0.00 0.00 39.30 2.90
60 61 4.946157 CACAATCTCCTTGGCTGTAAATCT 59.054 41.667 0.00 0.00 39.30 2.40
61 62 4.943705 TCACAATCTCCTTGGCTGTAAATC 59.056 41.667 0.00 0.00 39.30 2.17
62 63 4.922206 TCACAATCTCCTTGGCTGTAAAT 58.078 39.130 0.00 0.00 39.30 1.40
63 64 4.326826 CTCACAATCTCCTTGGCTGTAAA 58.673 43.478 0.00 0.00 39.30 2.01
64 65 3.869912 GCTCACAATCTCCTTGGCTGTAA 60.870 47.826 0.00 0.00 39.30 2.41
65 66 2.355108 GCTCACAATCTCCTTGGCTGTA 60.355 50.000 0.00 0.00 39.30 2.74
66 67 1.612726 GCTCACAATCTCCTTGGCTGT 60.613 52.381 0.00 0.00 39.30 4.40
67 68 1.093159 GCTCACAATCTCCTTGGCTG 58.907 55.000 0.00 0.00 39.30 4.85
68 69 0.990374 AGCTCACAATCTCCTTGGCT 59.010 50.000 0.00 0.00 39.30 4.75
69 70 1.831580 AAGCTCACAATCTCCTTGGC 58.168 50.000 0.00 0.00 39.30 4.52
70 71 3.415212 TCAAAGCTCACAATCTCCTTGG 58.585 45.455 0.00 0.00 39.30 3.61
71 72 5.640189 ATTCAAAGCTCACAATCTCCTTG 57.360 39.130 0.00 0.00 40.90 3.61
72 73 6.479884 ACTATTCAAAGCTCACAATCTCCTT 58.520 36.000 0.00 0.00 0.00 3.36
73 74 6.059787 ACTATTCAAAGCTCACAATCTCCT 57.940 37.500 0.00 0.00 0.00 3.69
74 75 6.749923 AACTATTCAAAGCTCACAATCTCC 57.250 37.500 0.00 0.00 0.00 3.71
75 76 6.525976 GCAAACTATTCAAAGCTCACAATCTC 59.474 38.462 0.00 0.00 0.00 2.75
76 77 6.016024 TGCAAACTATTCAAAGCTCACAATCT 60.016 34.615 0.00 0.00 0.00 2.40
81 82 4.858935 TGTGCAAACTATTCAAAGCTCAC 58.141 39.130 0.00 0.00 0.00 3.51
95 96 1.466360 CGAAGCAGGCTATGTGCAAAC 60.466 52.381 0.00 0.00 43.82 2.93
119 120 7.440198 TCTATAAACCTCATGATGAAGCTCAG 58.560 38.462 4.88 0.00 0.00 3.35
155 156 9.233232 CTTTAAGTGGTGATGTTTTGTTAAGTC 57.767 33.333 0.00 0.00 0.00 3.01
162 163 8.137437 ACTGAATCTTTAAGTGGTGATGTTTTG 58.863 33.333 0.00 0.00 0.00 2.44
165 166 6.998074 TGACTGAATCTTTAAGTGGTGATGTT 59.002 34.615 0.00 0.00 0.00 2.71
166 167 6.533730 TGACTGAATCTTTAAGTGGTGATGT 58.466 36.000 0.00 0.00 0.00 3.06
167 168 6.652481 ACTGACTGAATCTTTAAGTGGTGATG 59.348 38.462 0.00 0.00 0.00 3.07
189 190 3.469008 TCATTCTATACCGCCCAACTG 57.531 47.619 0.00 0.00 0.00 3.16
198 199 6.430925 TGGCACTTGCATAATCATTCTATACC 59.569 38.462 3.15 0.00 44.36 2.73
201 202 8.818622 ATATGGCACTTGCATAATCATTCTAT 57.181 30.769 3.15 0.00 44.36 1.98
206 207 5.771165 TGTGATATGGCACTTGCATAATCAT 59.229 36.000 3.15 0.00 44.36 2.45
219 220 4.598022 TGATGAAGGTTTGTGATATGGCA 58.402 39.130 0.00 0.00 0.00 4.92
243 244 1.864711 GCACAGTCGCAAGTTACTCAA 59.135 47.619 0.00 0.00 39.48 3.02
250 251 1.668419 AAAAGAGCACAGTCGCAAGT 58.332 45.000 0.00 0.00 39.48 3.16
251 252 3.059884 TCTAAAAGAGCACAGTCGCAAG 58.940 45.455 0.00 0.00 0.00 4.01
252 253 3.106242 TCTAAAAGAGCACAGTCGCAA 57.894 42.857 0.00 0.00 0.00 4.85
253 254 2.812358 TCTAAAAGAGCACAGTCGCA 57.188 45.000 0.00 0.00 0.00 5.10
254 255 4.670227 AAATCTAAAAGAGCACAGTCGC 57.330 40.909 0.00 0.00 0.00 5.19
278 279 3.691118 GTGCCTCACATGAAGCATAAAGA 59.309 43.478 8.34 0.00 42.66 2.52
285 286 2.401766 CGGGTGCCTCACATGAAGC 61.402 63.158 0.00 0.00 35.86 3.86
289 290 0.177836 TATGTCGGGTGCCTCACATG 59.822 55.000 12.66 0.00 35.86 3.21
290 291 1.131638 ATATGTCGGGTGCCTCACAT 58.868 50.000 9.42 9.42 35.86 3.21
293 294 0.671796 CGTATATGTCGGGTGCCTCA 59.328 55.000 0.00 0.00 0.00 3.86
294 295 0.672342 ACGTATATGTCGGGTGCCTC 59.328 55.000 0.00 0.00 0.00 4.70
303 304 2.223641 TGCTTGGGACGACGTATATGTC 60.224 50.000 14.13 14.13 35.49 3.06
305 306 2.502213 TGCTTGGGACGACGTATATG 57.498 50.000 0.00 0.00 0.00 1.78
308 309 2.172851 TTTTGCTTGGGACGACGTAT 57.827 45.000 0.00 0.00 0.00 3.06
309 310 2.172851 ATTTTGCTTGGGACGACGTA 57.827 45.000 0.00 0.00 0.00 3.57
310 311 2.172851 TATTTTGCTTGGGACGACGT 57.827 45.000 0.00 0.00 0.00 4.34
311 312 2.418628 ACATATTTTGCTTGGGACGACG 59.581 45.455 0.00 0.00 0.00 5.12
312 313 5.554822 TTACATATTTTGCTTGGGACGAC 57.445 39.130 0.00 0.00 0.00 4.34
313 314 6.767524 AATTACATATTTTGCTTGGGACGA 57.232 33.333 0.00 0.00 0.00 4.20
314 315 7.032580 TGAAATTACATATTTTGCTTGGGACG 58.967 34.615 0.00 0.00 0.00 4.79
332 333 6.429078 GCCACAGAGAGATGCATATGAAATTA 59.571 38.462 6.97 0.00 0.00 1.40
340 341 1.415289 CAGGCCACAGAGAGATGCATA 59.585 52.381 5.01 0.00 0.00 3.14
351 352 2.715749 TGAATGTATCCAGGCCACAG 57.284 50.000 5.01 0.00 0.00 3.66
353 354 2.301346 CCTTGAATGTATCCAGGCCAC 58.699 52.381 5.01 0.00 34.45 5.01
360 363 2.024414 GTGTGCCCCTTGAATGTATCC 58.976 52.381 0.00 0.00 0.00 2.59
364 367 1.259609 CATGTGTGCCCCTTGAATGT 58.740 50.000 0.00 0.00 0.00 2.71
365 368 0.108520 GCATGTGTGCCCCTTGAATG 60.109 55.000 0.00 0.00 45.76 2.67
406 409 7.284716 CCAGTGGAACCCCTAATATTAAAGTTC 59.715 40.741 1.68 16.41 37.80 3.01
416 419 1.296002 GTCCCAGTGGAACCCCTAAT 58.704 55.000 11.95 0.00 44.07 1.73
417 420 1.196104 CGTCCCAGTGGAACCCCTAA 61.196 60.000 11.95 0.00 44.07 2.69
419 422 2.928396 CGTCCCAGTGGAACCCCT 60.928 66.667 11.95 0.00 44.07 4.79
420 423 4.717313 GCGTCCCAGTGGAACCCC 62.717 72.222 11.95 0.00 44.07 4.95
423 426 3.998672 TCCGCGTCCCAGTGGAAC 61.999 66.667 11.95 0.00 46.63 3.62
426 429 3.530910 AAACTCCGCGTCCCAGTGG 62.531 63.158 4.92 0.63 42.87 4.00
427 430 1.597027 AAAACTCCGCGTCCCAGTG 60.597 57.895 4.92 0.00 0.00 3.66
428 431 1.597027 CAAAACTCCGCGTCCCAGT 60.597 57.895 4.92 0.00 0.00 4.00
429 432 1.291877 CTCAAAACTCCGCGTCCCAG 61.292 60.000 4.92 0.00 0.00 4.45
430 433 1.301401 CTCAAAACTCCGCGTCCCA 60.301 57.895 4.92 0.00 0.00 4.37
431 434 0.391263 ATCTCAAAACTCCGCGTCCC 60.391 55.000 4.92 0.00 0.00 4.46
432 435 1.000145 GATCTCAAAACTCCGCGTCC 59.000 55.000 4.92 0.00 0.00 4.79
433 436 0.640768 CGATCTCAAAACTCCGCGTC 59.359 55.000 4.92 0.00 0.00 5.19
434 437 0.736325 CCGATCTCAAAACTCCGCGT 60.736 55.000 4.92 0.00 0.00 6.01
435 438 1.421410 CCCGATCTCAAAACTCCGCG 61.421 60.000 0.00 0.00 0.00 6.46
436 439 0.391263 ACCCGATCTCAAAACTCCGC 60.391 55.000 0.00 0.00 0.00 5.54
437 440 1.067142 TCACCCGATCTCAAAACTCCG 60.067 52.381 0.00 0.00 0.00 4.63
438 441 2.742589 GTTCACCCGATCTCAAAACTCC 59.257 50.000 0.00 0.00 0.00 3.85
439 442 3.399330 TGTTCACCCGATCTCAAAACTC 58.601 45.455 0.00 0.00 0.00 3.01
440 443 3.181454 ACTGTTCACCCGATCTCAAAACT 60.181 43.478 0.00 0.00 0.00 2.66
441 444 3.139077 ACTGTTCACCCGATCTCAAAAC 58.861 45.455 0.00 0.00 0.00 2.43
442 445 3.485463 ACTGTTCACCCGATCTCAAAA 57.515 42.857 0.00 0.00 0.00 2.44
443 446 4.610605 TTACTGTTCACCCGATCTCAAA 57.389 40.909 0.00 0.00 0.00 2.69
444 447 4.610605 TTTACTGTTCACCCGATCTCAA 57.389 40.909 0.00 0.00 0.00 3.02
445 448 4.610605 TTTTACTGTTCACCCGATCTCA 57.389 40.909 0.00 0.00 0.00 3.27
446 449 5.175859 TGATTTTACTGTTCACCCGATCTC 58.824 41.667 0.00 0.00 0.00 2.75
447 450 5.160607 TGATTTTACTGTTCACCCGATCT 57.839 39.130 0.00 0.00 0.00 2.75
448 451 5.873179 TTGATTTTACTGTTCACCCGATC 57.127 39.130 0.00 0.00 0.00 3.69
449 452 6.264518 AGTTTTGATTTTACTGTTCACCCGAT 59.735 34.615 0.00 0.00 0.00 4.18
450 453 5.591067 AGTTTTGATTTTACTGTTCACCCGA 59.409 36.000 0.00 0.00 0.00 5.14
451 454 5.827666 AGTTTTGATTTTACTGTTCACCCG 58.172 37.500 0.00 0.00 0.00 5.28
452 455 9.758651 ATTTAGTTTTGATTTTACTGTTCACCC 57.241 29.630 0.00 0.00 0.00 4.61
503 506 8.614469 AACTTTTGTCAATGTTTCTCCAAAAA 57.386 26.923 0.00 0.00 33.09 1.94
504 507 8.093927 AGAACTTTTGTCAATGTTTCTCCAAAA 58.906 29.630 6.10 0.00 31.96 2.44
505 508 7.610865 AGAACTTTTGTCAATGTTTCTCCAAA 58.389 30.769 6.10 0.00 31.96 3.28
506 509 7.169158 AGAACTTTTGTCAATGTTTCTCCAA 57.831 32.000 6.10 0.00 31.96 3.53
507 510 6.773976 AGAACTTTTGTCAATGTTTCTCCA 57.226 33.333 6.10 0.00 31.96 3.86
508 511 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
509 512 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
510 513 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
511 514 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
512 515 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
513 516 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
514 517 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
515 518 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
516 519 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
517 520 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
518 521 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
519 522 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
520 523 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
521 524 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
522 525 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
523 526 7.254084 CGAATTTTTGCAAGCACTTAGAACTTT 60.254 33.333 0.00 0.00 0.00 2.66
524 527 6.198966 CGAATTTTTGCAAGCACTTAGAACTT 59.801 34.615 0.00 0.00 0.00 2.66
525 528 5.687285 CGAATTTTTGCAAGCACTTAGAACT 59.313 36.000 0.00 0.00 0.00 3.01
526 529 5.610338 GCGAATTTTTGCAAGCACTTAGAAC 60.610 40.000 0.00 0.00 37.52 3.01
527 530 4.444056 GCGAATTTTTGCAAGCACTTAGAA 59.556 37.500 0.00 0.00 37.52 2.10
528 531 3.980775 GCGAATTTTTGCAAGCACTTAGA 59.019 39.130 0.00 0.00 37.52 2.10
529 532 3.121778 GGCGAATTTTTGCAAGCACTTAG 59.878 43.478 0.00 0.00 39.39 2.18
530 533 3.056304 GGCGAATTTTTGCAAGCACTTA 58.944 40.909 0.00 0.00 39.39 2.24
531 534 1.866601 GGCGAATTTTTGCAAGCACTT 59.133 42.857 0.00 0.00 39.39 3.16
532 535 1.202510 TGGCGAATTTTTGCAAGCACT 60.203 42.857 0.00 0.00 39.39 4.40
533 536 1.216122 TGGCGAATTTTTGCAAGCAC 58.784 45.000 0.00 0.00 39.39 4.40
534 537 1.799403 CATGGCGAATTTTTGCAAGCA 59.201 42.857 0.00 0.00 39.39 3.91
535 538 2.067766 TCATGGCGAATTTTTGCAAGC 58.932 42.857 0.00 0.00 39.39 4.01
536 539 4.728917 TTTCATGGCGAATTTTTGCAAG 57.271 36.364 0.00 0.00 39.39 4.01
537 540 4.753610 TGATTTCATGGCGAATTTTTGCAA 59.246 33.333 0.00 0.00 39.39 4.08
538 541 4.152045 GTGATTTCATGGCGAATTTTTGCA 59.848 37.500 4.98 0.00 39.39 4.08
539 542 4.152045 TGTGATTTCATGGCGAATTTTTGC 59.848 37.500 0.00 0.00 36.84 3.68
540 543 5.842619 TGTGATTTCATGGCGAATTTTTG 57.157 34.783 0.00 0.00 32.32 2.44
541 544 6.092533 GGAATGTGATTTCATGGCGAATTTTT 59.907 34.615 0.00 0.00 32.32 1.94
542 545 5.581874 GGAATGTGATTTCATGGCGAATTTT 59.418 36.000 0.00 0.00 32.32 1.82
543 546 5.105228 AGGAATGTGATTTCATGGCGAATTT 60.105 36.000 0.00 0.00 32.32 1.82
544 547 4.403432 AGGAATGTGATTTCATGGCGAATT 59.597 37.500 0.00 0.00 32.32 2.17
545 548 3.956199 AGGAATGTGATTTCATGGCGAAT 59.044 39.130 0.00 0.00 32.32 3.34
546 549 3.355378 AGGAATGTGATTTCATGGCGAA 58.645 40.909 0.00 0.00 0.00 4.70
547 550 3.003394 AGGAATGTGATTTCATGGCGA 57.997 42.857 0.00 0.00 0.00 5.54
548 551 4.129380 TCTAGGAATGTGATTTCATGGCG 58.871 43.478 0.00 0.00 0.00 5.69
549 552 5.009410 CCTTCTAGGAATGTGATTTCATGGC 59.991 44.000 0.00 0.00 37.67 4.40
550 553 5.009410 GCCTTCTAGGAATGTGATTTCATGG 59.991 44.000 0.00 0.00 37.67 3.66
551 554 5.591472 TGCCTTCTAGGAATGTGATTTCATG 59.409 40.000 0.00 0.00 37.67 3.07
552 555 5.759059 TGCCTTCTAGGAATGTGATTTCAT 58.241 37.500 0.00 0.00 37.67 2.57
553 556 5.178096 TGCCTTCTAGGAATGTGATTTCA 57.822 39.130 0.00 0.00 37.67 2.69
554 557 6.069684 CATGCCTTCTAGGAATGTGATTTC 57.930 41.667 5.64 0.00 44.91 2.17
562 565 3.386932 TTTGCCATGCCTTCTAGGAAT 57.613 42.857 0.00 0.00 37.67 3.01
563 566 2.897271 TTTGCCATGCCTTCTAGGAA 57.103 45.000 0.00 0.00 37.67 3.36
564 567 2.897271 TTTTGCCATGCCTTCTAGGA 57.103 45.000 0.00 0.00 37.67 2.94
592 595 9.832445 TGAAAGTAGATTTTTCAGAGTACTGTT 57.168 29.630 0.00 0.00 43.81 3.16
593 596 9.832445 TTGAAAGTAGATTTTTCAGAGTACTGT 57.168 29.630 0.00 0.00 43.22 3.55
598 601 8.686334 TGCTTTTGAAAGTAGATTTTTCAGAGT 58.314 29.630 5.47 0.00 43.22 3.24
599 602 9.688592 ATGCTTTTGAAAGTAGATTTTTCAGAG 57.311 29.630 5.47 5.23 43.22 3.35
618 621 6.930667 AATTCAGTGCTTCAAAATGCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
619 622 6.316890 ACAAATTCAGTGCTTCAAAATGCTTT 59.683 30.769 0.00 0.00 0.00 3.51
620 623 5.818857 ACAAATTCAGTGCTTCAAAATGCTT 59.181 32.000 0.00 0.00 0.00 3.91
621 624 5.362263 ACAAATTCAGTGCTTCAAAATGCT 58.638 33.333 0.00 0.00 0.00 3.79
622 625 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
623 626 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
658 661 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
659 662 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
660 663 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
661 664 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
662 665 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
663 666 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
664 667 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
665 668 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
666 669 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
667 670 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
668 671 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
669 672 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
670 673 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
671 674 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
672 675 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
673 676 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
674 677 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
675 678 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
676 679 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
677 680 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
678 681 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
679 682 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
680 683 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
681 684 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
682 685 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
683 686 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
684 687 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
685 688 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
686 689 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
687 690 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
688 691 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
689 692 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
690 693 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
691 694 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
692 695 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
693 696 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
694 697 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
695 698 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
696 699 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
761 764 7.327214 AGCTTGGTGAACAGTAAAATCAAAAA 58.673 30.769 0.00 0.00 0.00 1.94
762 765 6.872920 AGCTTGGTGAACAGTAAAATCAAAA 58.127 32.000 0.00 0.00 0.00 2.44
763 766 6.096141 TGAGCTTGGTGAACAGTAAAATCAAA 59.904 34.615 0.00 0.00 0.00 2.69
764 767 5.592282 TGAGCTTGGTGAACAGTAAAATCAA 59.408 36.000 0.00 0.00 0.00 2.57
765 768 5.129634 TGAGCTTGGTGAACAGTAAAATCA 58.870 37.500 0.00 0.00 0.00 2.57
766 769 5.689383 TGAGCTTGGTGAACAGTAAAATC 57.311 39.130 0.00 0.00 0.00 2.17
767 770 6.463995 TTTGAGCTTGGTGAACAGTAAAAT 57.536 33.333 0.00 0.00 0.00 1.82
768 771 5.906113 TTTGAGCTTGGTGAACAGTAAAA 57.094 34.783 0.00 0.00 0.00 1.52
769 772 5.592282 TCATTTGAGCTTGGTGAACAGTAAA 59.408 36.000 0.00 0.00 0.00 2.01
770 773 5.129634 TCATTTGAGCTTGGTGAACAGTAA 58.870 37.500 0.00 0.00 0.00 2.24
771 774 4.713553 TCATTTGAGCTTGGTGAACAGTA 58.286 39.130 0.00 0.00 0.00 2.74
772 775 3.554934 TCATTTGAGCTTGGTGAACAGT 58.445 40.909 0.00 0.00 0.00 3.55
773 776 4.156664 CTCATTTGAGCTTGGTGAACAG 57.843 45.455 0.00 0.00 35.13 3.16
795 798 0.890996 AGTGCCTTTTTGCTCCCGAG 60.891 55.000 0.00 0.00 0.00 4.63
796 799 0.467290 AAGTGCCTTTTTGCTCCCGA 60.467 50.000 0.00 0.00 0.00 5.14
797 800 0.389025 AAAGTGCCTTTTTGCTCCCG 59.611 50.000 0.00 0.00 28.27 5.14
798 801 1.602920 CGAAAGTGCCTTTTTGCTCCC 60.603 52.381 2.33 0.00 33.49 4.30
799 802 1.602920 CCGAAAGTGCCTTTTTGCTCC 60.603 52.381 2.33 0.00 33.49 4.70
800 803 1.067060 ACCGAAAGTGCCTTTTTGCTC 59.933 47.619 2.33 0.00 33.49 4.26
801 804 1.111277 ACCGAAAGTGCCTTTTTGCT 58.889 45.000 2.33 0.00 33.49 3.91
802 805 1.858458 GAACCGAAAGTGCCTTTTTGC 59.142 47.619 2.33 0.00 33.49 3.68
803 806 2.159170 TGGAACCGAAAGTGCCTTTTTG 60.159 45.455 2.33 0.00 46.01 2.44
804 807 2.104170 TGGAACCGAAAGTGCCTTTTT 58.896 42.857 2.33 0.00 46.01 1.94
805 808 1.407618 GTGGAACCGAAAGTGCCTTTT 59.592 47.619 2.33 0.00 46.01 2.27
806 809 1.029681 GTGGAACCGAAAGTGCCTTT 58.970 50.000 0.46 0.46 46.01 3.11
807 810 0.182775 AGTGGAACCGAAAGTGCCTT 59.817 50.000 0.00 0.00 46.01 4.35
808 811 0.535102 CAGTGGAACCGAAAGTGCCT 60.535 55.000 0.00 0.00 46.01 4.75
809 812 1.949257 CAGTGGAACCGAAAGTGCC 59.051 57.895 0.00 0.00 46.04 5.01
810 813 1.282875 GCAGTGGAACCGAAAGTGC 59.717 57.895 0.00 0.00 37.80 4.40
811 814 0.307760 GTGCAGTGGAACCGAAAGTG 59.692 55.000 0.00 0.00 37.80 3.16
812 815 0.818040 GGTGCAGTGGAACCGAAAGT 60.818 55.000 0.00 0.00 37.80 2.66
813 816 1.949257 GGTGCAGTGGAACCGAAAG 59.051 57.895 0.00 0.00 37.80 2.62
814 817 4.150994 GGTGCAGTGGAACCGAAA 57.849 55.556 0.00 0.00 37.80 3.46
830 833 1.078143 GGCTCCCAGTTGTGCTAGG 60.078 63.158 0.00 0.00 0.00 3.02
848 851 0.985549 GTCGCAAGTGACTTCGCTAG 59.014 55.000 14.49 0.00 35.32 3.42
850 853 0.941463 CAGTCGCAAGTGACTTCGCT 60.941 55.000 13.19 10.79 46.85 4.93
881 884 0.964700 AAAAGGAGGAGCTTGCTTGC 59.035 50.000 0.00 0.00 0.00 4.01
901 904 3.493524 GCAGAAGCTAAGGATGGTAGACC 60.494 52.174 0.00 0.00 37.91 3.85
905 908 3.969976 AGATGCAGAAGCTAAGGATGGTA 59.030 43.478 0.00 0.00 42.74 3.25
936 939 4.010349 GGAGGTAGTAGTGCAAATGCTTT 58.990 43.478 6.97 0.00 42.66 3.51
937 940 3.009033 TGGAGGTAGTAGTGCAAATGCTT 59.991 43.478 6.97 0.00 42.66 3.91
953 956 1.216678 TGGTTGTGAATGGTTGGAGGT 59.783 47.619 0.00 0.00 0.00 3.85
964 967 4.462834 TGGTTTGTGTGTATTGGTTGTGAA 59.537 37.500 0.00 0.00 0.00 3.18
1011 1014 2.664851 TTGCCAACGCTCAGTCCG 60.665 61.111 0.00 0.00 35.36 4.79
1013 1016 1.862806 GACTTGCCAACGCTCAGTC 59.137 57.895 0.00 0.00 38.22 3.51
1032 1035 0.659957 GAATCGCTCCATTCAGCACC 59.340 55.000 0.00 0.00 39.62 5.01
1051 1054 3.036084 GGCGGATGTGGCGTATCG 61.036 66.667 0.00 0.00 0.00 2.92
1116 1119 1.000394 TCGAGCTCATTGGTGACGAAA 60.000 47.619 15.40 0.00 30.49 3.46
1120 1123 2.159184 TCATCTCGAGCTCATTGGTGAC 60.159 50.000 15.40 0.00 0.00 3.67
1163 1166 2.034878 CCATCTCTCCCTCGTCATGAA 58.965 52.381 0.00 0.00 0.00 2.57
1175 1178 0.460987 CGACCCTGTTGCCATCTCTC 60.461 60.000 0.00 0.00 0.00 3.20
1176 1179 1.194781 ACGACCCTGTTGCCATCTCT 61.195 55.000 0.00 0.00 0.00 3.10
1193 1196 0.951040 GCTTCACCCAGACCTTGACG 60.951 60.000 0.00 0.00 0.00 4.35
1378 1381 1.398041 TGATGAGTTTGTAGCGCATGC 59.602 47.619 11.47 7.91 43.24 4.06
1391 1394 2.679716 GCAGGGCCCTTGATGAGT 59.320 61.111 26.10 0.00 0.00 3.41
1440 1443 1.081892 AGTGCTGCAGAAGTAATGCG 58.918 50.000 20.43 0.00 46.87 4.73
1464 1467 2.093500 TGTACCTTGCTTCATCGATGCT 60.093 45.455 20.81 0.00 34.46 3.79
1769 1780 3.072211 TCAAACATCTCAGCAAGCTCTG 58.928 45.455 0.00 0.00 35.46 3.35
1784 1795 3.901222 TCCCACTCAGTACTCATCAAACA 59.099 43.478 0.00 0.00 0.00 2.83
1820 1832 9.295825 TCAATGGTGTTTAAGTCATTAATCACT 57.704 29.630 15.87 0.00 44.14 3.41
1857 1869 2.321719 TGGGAAGCAACTTTTAACCCC 58.678 47.619 0.00 0.00 35.48 4.95
1907 1919 5.044558 GGAACTTCTACTTTAGCGATGGAG 58.955 45.833 0.00 0.00 0.00 3.86
1912 1924 4.021368 AGCTTGGAACTTCTACTTTAGCGA 60.021 41.667 0.00 0.00 0.00 4.93
1913 1925 4.246458 AGCTTGGAACTTCTACTTTAGCG 58.754 43.478 0.00 0.00 0.00 4.26
1917 1929 8.154856 TGTACATAAGCTTGGAACTTCTACTTT 58.845 33.333 9.86 0.00 0.00 2.66
1929 1941 2.418368 TGCCCTGTACATAAGCTTGG 57.582 50.000 9.86 3.63 0.00 3.61
1950 1962 6.881065 TGCTTGAGTTCTGATACTATGCTTTT 59.119 34.615 0.00 0.00 0.00 2.27
2022 2036 3.882888 ACAACACATGGTCGAACTTTGAT 59.117 39.130 0.33 0.00 0.00 2.57
2060 2074 5.618056 ACTACAAATGCAAGTGACTGATG 57.382 39.130 6.97 0.00 0.00 3.07
2149 2163 4.892934 TCCTAATGAATGTAAACCATGCCC 59.107 41.667 0.00 0.00 32.82 5.36
2169 2183 9.911788 AAATGAGTAATCATGTGATTAACTCCT 57.088 29.630 23.72 18.07 45.39 3.69
2232 2246 8.458573 AACAAGAAACATAATGGTACTCACAA 57.541 30.769 0.00 0.00 0.00 3.33
2233 2247 8.349245 CAAACAAGAAACATAATGGTACTCACA 58.651 33.333 0.00 0.00 0.00 3.58
2301 2318 4.220602 ACAGGGACCAAACAATATTGCTTC 59.779 41.667 15.48 4.88 0.00 3.86
2459 2476 2.780065 GCAGTGTGCATTCTGTTTGA 57.220 45.000 17.84 0.00 44.26 2.69
2477 2494 4.113354 GCACACAGGTTACTACTCATAGC 58.887 47.826 0.00 0.00 30.75 2.97
2644 2683 6.678900 GCAATGTTAATCCATGTTGAGAGACC 60.679 42.308 0.00 0.00 0.00 3.85
2678 2726 3.175438 TCCATCTTGAGAGACCTGTGA 57.825 47.619 0.00 0.00 33.99 3.58
2712 2760 2.412847 CGGTTTGAGCTTGATTCCGTTC 60.413 50.000 9.13 0.00 33.20 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.