Multiple sequence alignment - TraesCS1D01G020200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G020200 chr1D 100.000 8536 0 0 1 8536 8720025 8728560 0.000000e+00 15764.0
1 TraesCS1D01G020200 chr1B 95.379 4285 131 27 834 5058 11884654 11888931 0.000000e+00 6754.0
2 TraesCS1D01G020200 chr1B 95.389 2234 65 15 5505 7724 11888924 11891133 0.000000e+00 3520.0
3 TraesCS1D01G020200 chr1B 92.588 850 39 11 7699 8536 11891142 11891979 0.000000e+00 1199.0
4 TraesCS1D01G020200 chr1B 91.854 847 41 16 7699 8533 11897035 11897865 0.000000e+00 1157.0
5 TraesCS1D01G020200 chr1B 76.614 573 113 16 984 1544 653879990 653880553 6.480000e-76 296.0
6 TraesCS1D01G020200 chr1B 89.032 155 11 5 7572 7724 11896876 11897026 4.070000e-43 187.0
7 TraesCS1D01G020200 chr1B 87.629 97 6 3 697 789 11884555 11884649 3.260000e-19 108.0
8 TraesCS1D01G020200 chr1A 92.645 4351 223 48 4257 8536 10081569 10085893 0.000000e+00 6172.0
9 TraesCS1D01G020200 chr1A 91.829 2105 89 32 603 2664 10074805 10076869 0.000000e+00 2857.0
10 TraesCS1D01G020200 chr1A 95.414 1330 37 6 2839 4165 10080261 10081569 0.000000e+00 2097.0
11 TraesCS1D01G020200 chr1A 75.916 573 117 17 984 1544 564302156 564302719 3.040000e-69 274.0
12 TraesCS1D01G020200 chr1A 94.798 173 7 1 2647 2819 10080050 10080220 1.410000e-67 268.0
13 TraesCS1D01G020200 chr1A 83.468 248 22 8 128 362 10074359 10074600 6.710000e-51 213.0
14 TraesCS1D01G020200 chr5A 100.000 46 0 0 1288 1333 52484002 52484047 1.530000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G020200 chr1D 8720025 8728560 8535 False 15764.00 15764 100.00000 1 8536 1 chr1D.!!$F1 8535
1 TraesCS1D01G020200 chr1B 11884555 11891979 7424 False 2895.25 6754 92.74625 697 8536 4 chr1B.!!$F2 7839
2 TraesCS1D01G020200 chr1B 11896876 11897865 989 False 672.00 1157 90.44300 7572 8533 2 chr1B.!!$F3 961
3 TraesCS1D01G020200 chr1B 653879990 653880553 563 False 296.00 296 76.61400 984 1544 1 chr1B.!!$F1 560
4 TraesCS1D01G020200 chr1A 10074359 10085893 11534 False 2321.40 6172 91.63080 128 8536 5 chr1A.!!$F2 8408
5 TraesCS1D01G020200 chr1A 564302156 564302719 563 False 274.00 274 75.91600 984 1544 1 chr1A.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 396 0.034896 AATGAGTCTCCACGGCGTTT 59.965 50.000 11.19 0.0 0.00 3.60 F
392 405 0.039978 CCACGGCGTTTATTGCACAA 60.040 50.000 11.19 0.0 0.00 3.33 F
1368 1447 0.107703 CCGAGCAGGTCTGGCAATTA 60.108 55.000 0.00 0.0 34.51 1.40 F
1865 1951 2.154462 GCTGGAGCTTGTTACACATGT 58.846 47.619 0.00 0.0 38.21 3.21 F
2191 2299 3.674997 CTGGCTTTACACTTAGGCTTCA 58.325 45.455 0.00 0.0 37.78 3.02 F
3218 6552 1.251251 GCAGGTGCACAAGAAGGATT 58.749 50.000 20.43 0.0 41.59 3.01 F
4223 7561 1.070134 AGTAACTCCGTTCAGCTTGCA 59.930 47.619 0.00 0.0 0.00 4.08 F
5471 8821 0.250234 TGGCCCATCTTTCTCTGACG 59.750 55.000 0.00 0.0 0.00 4.35 F
5473 8823 1.472376 GGCCCATCTTTCTCTGACGAG 60.472 57.143 0.00 0.0 38.67 4.18 F
6198 9572 1.638133 CTCCAGAATGTCTGCTGTCG 58.362 55.000 0.00 0.0 42.98 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 1951 0.610785 GGGAAAAGGATTGGCCGTCA 60.611 55.000 9.83 0.0 43.43 4.35 R
2152 2260 1.599071 CAGCCATAGTTACATGCCACG 59.401 52.381 0.00 0.0 0.00 4.94 R
2835 6148 2.270352 ACATCAGTTTTCTTCCCGCA 57.730 45.000 0.00 0.0 0.00 5.69 R
2836 6149 2.293399 ACAACATCAGTTTTCTTCCCGC 59.707 45.455 0.00 0.0 35.28 6.13 R
3876 7214 2.104111 ACGCCAAGGCTGCATTATAGTA 59.896 45.455 9.73 0.0 39.32 1.82 R
4993 8337 1.808411 AACATGACCGCCTTGTACTG 58.192 50.000 0.00 0.0 33.40 2.74 R
6081 9452 0.106708 TGTGACTCAAGGTGCCAGAC 59.893 55.000 0.00 0.0 0.00 3.51 R
6577 9969 1.010125 CCGCCACGTTGTGAACTTG 60.010 57.895 1.08 0.0 35.23 3.16 R
7005 10399 1.201429 ACTCCGGGTCTGCTTGGAAT 61.201 55.000 0.00 0.0 0.00 3.01 R
8090 11533 0.035739 TAAACCCCACTGTCGGCTTC 59.964 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.577593 GCCGGTAGCTTCCTCGTT 59.422 61.111 7.87 0.00 38.99 3.85
36 37 1.079336 GCCGGTAGCTTCCTCGTTT 60.079 57.895 7.87 0.00 38.99 3.60
37 38 1.082679 GCCGGTAGCTTCCTCGTTTC 61.083 60.000 7.87 0.00 38.99 2.78
38 39 0.459759 CCGGTAGCTTCCTCGTTTCC 60.460 60.000 7.87 0.00 0.00 3.13
39 40 0.459759 CGGTAGCTTCCTCGTTTCCC 60.460 60.000 7.87 0.00 0.00 3.97
40 41 0.611714 GGTAGCTTCCTCGTTTCCCA 59.388 55.000 1.39 0.00 0.00 4.37
41 42 1.002773 GGTAGCTTCCTCGTTTCCCAA 59.997 52.381 1.39 0.00 0.00 4.12
42 43 2.347731 GTAGCTTCCTCGTTTCCCAAG 58.652 52.381 0.00 0.00 0.00 3.61
43 44 0.036875 AGCTTCCTCGTTTCCCAAGG 59.963 55.000 0.00 0.00 0.00 3.61
44 45 1.587043 GCTTCCTCGTTTCCCAAGGC 61.587 60.000 0.00 0.00 0.00 4.35
45 46 0.960861 CTTCCTCGTTTCCCAAGGCC 60.961 60.000 0.00 0.00 0.00 5.19
46 47 1.710996 TTCCTCGTTTCCCAAGGCCA 61.711 55.000 5.01 0.00 0.00 5.36
47 48 1.971695 CCTCGTTTCCCAAGGCCAC 60.972 63.158 5.01 0.00 0.00 5.01
48 49 1.073199 CTCGTTTCCCAAGGCCACT 59.927 57.895 5.01 0.00 0.00 4.00
49 50 0.955919 CTCGTTTCCCAAGGCCACTC 60.956 60.000 5.01 0.00 0.00 3.51
50 51 1.073199 CGTTTCCCAAGGCCACTCT 59.927 57.895 5.01 0.00 0.00 3.24
51 52 1.237285 CGTTTCCCAAGGCCACTCTG 61.237 60.000 5.01 0.00 0.00 3.35
52 53 0.895559 GTTTCCCAAGGCCACTCTGG 60.896 60.000 5.01 5.82 41.55 3.86
53 54 1.360393 TTTCCCAAGGCCACTCTGGT 61.360 55.000 5.01 0.00 40.46 4.00
54 55 1.779061 TTCCCAAGGCCACTCTGGTC 61.779 60.000 5.01 0.00 44.07 4.02
59 60 3.298958 GGCCACTCTGGTCGATGA 58.701 61.111 0.00 0.00 40.46 2.92
60 61 1.826024 GGCCACTCTGGTCGATGAT 59.174 57.895 0.00 0.00 40.46 2.45
61 62 0.179000 GGCCACTCTGGTCGATGATT 59.821 55.000 0.00 0.00 40.46 2.57
62 63 1.293924 GCCACTCTGGTCGATGATTG 58.706 55.000 0.00 0.00 40.46 2.67
63 64 1.293924 CCACTCTGGTCGATGATTGC 58.706 55.000 0.00 0.00 31.35 3.56
64 65 0.926155 CACTCTGGTCGATGATTGCG 59.074 55.000 0.00 0.00 0.00 4.85
65 66 0.807667 ACTCTGGTCGATGATTGCGC 60.808 55.000 0.00 0.00 0.00 6.09
66 67 1.815212 CTCTGGTCGATGATTGCGCG 61.815 60.000 0.00 0.00 0.00 6.86
67 68 2.874694 CTGGTCGATGATTGCGCGG 61.875 63.158 8.83 0.00 0.00 6.46
68 69 2.890474 GGTCGATGATTGCGCGGT 60.890 61.111 8.83 0.00 0.00 5.68
69 70 2.621000 GTCGATGATTGCGCGGTC 59.379 61.111 8.83 3.59 0.00 4.79
70 71 1.878522 GTCGATGATTGCGCGGTCT 60.879 57.895 8.83 0.00 0.00 3.85
71 72 1.153647 TCGATGATTGCGCGGTCTT 60.154 52.632 8.83 1.04 0.00 3.01
72 73 1.145759 TCGATGATTGCGCGGTCTTC 61.146 55.000 8.83 9.95 0.00 2.87
73 74 1.643832 GATGATTGCGCGGTCTTCC 59.356 57.895 8.83 0.00 0.00 3.46
74 75 0.811616 GATGATTGCGCGGTCTTCCT 60.812 55.000 8.83 0.00 0.00 3.36
75 76 0.811616 ATGATTGCGCGGTCTTCCTC 60.812 55.000 8.83 0.00 0.00 3.71
76 77 2.125106 ATTGCGCGGTCTTCCTCC 60.125 61.111 8.83 0.00 0.00 4.30
77 78 2.579684 GATTGCGCGGTCTTCCTCCT 62.580 60.000 8.83 0.00 0.00 3.69
78 79 2.859273 ATTGCGCGGTCTTCCTCCTG 62.859 60.000 8.83 0.00 0.00 3.86
79 80 4.821589 GCGCGGTCTTCCTCCTGG 62.822 72.222 8.83 0.00 0.00 4.45
80 81 3.382832 CGCGGTCTTCCTCCTGGT 61.383 66.667 0.00 0.00 34.23 4.00
81 82 2.050350 CGCGGTCTTCCTCCTGGTA 61.050 63.158 0.00 0.00 34.23 3.25
82 83 1.516423 GCGGTCTTCCTCCTGGTAC 59.484 63.158 0.00 0.00 34.23 3.34
83 84 1.255667 GCGGTCTTCCTCCTGGTACA 61.256 60.000 0.00 0.00 34.23 2.90
84 85 0.531200 CGGTCTTCCTCCTGGTACAC 59.469 60.000 0.00 0.00 34.23 2.90
85 86 0.903236 GGTCTTCCTCCTGGTACACC 59.097 60.000 0.00 0.00 34.23 4.16
86 87 0.903236 GTCTTCCTCCTGGTACACCC 59.097 60.000 0.00 0.00 34.29 4.61
87 88 0.252558 TCTTCCTCCTGGTACACCCC 60.253 60.000 0.00 0.00 34.29 4.95
88 89 0.252742 CTTCCTCCTGGTACACCCCT 60.253 60.000 0.00 0.00 34.29 4.79
89 90 1.007963 CTTCCTCCTGGTACACCCCTA 59.992 57.143 0.00 0.00 34.29 3.53
90 91 0.337428 TCCTCCTGGTACACCCCTAC 59.663 60.000 0.00 0.00 34.29 3.18
91 92 1.041447 CCTCCTGGTACACCCCTACG 61.041 65.000 0.00 0.00 34.29 3.51
92 93 0.324091 CTCCTGGTACACCCCTACGT 60.324 60.000 0.00 0.00 34.29 3.57
93 94 0.323725 TCCTGGTACACCCCTACGTC 60.324 60.000 0.00 0.00 34.29 4.34
94 95 1.660560 CCTGGTACACCCCTACGTCG 61.661 65.000 0.00 0.00 34.29 5.12
95 96 0.962356 CTGGTACACCCCTACGTCGT 60.962 60.000 2.21 2.21 34.29 4.34
96 97 1.243342 TGGTACACCCCTACGTCGTG 61.243 60.000 8.47 0.00 34.29 4.35
97 98 1.153958 GTACACCCCTACGTCGTGC 60.154 63.158 8.47 0.00 0.00 5.34
98 99 2.342650 TACACCCCTACGTCGTGCC 61.343 63.158 8.47 0.00 0.00 5.01
99 100 4.789075 CACCCCTACGTCGTGCCG 62.789 72.222 8.47 0.00 0.00 5.69
135 136 2.204291 TCCCAAGGACATGGCCCT 60.204 61.111 16.13 8.69 39.26 5.19
137 138 0.551377 TCCCAAGGACATGGCCCTTA 60.551 55.000 16.13 0.05 41.79 2.69
140 141 1.094785 CAAGGACATGGCCCTTAACG 58.905 55.000 16.13 2.55 41.79 3.18
145 146 1.199097 GACATGGCCCTTAACGTGTTG 59.801 52.381 0.00 0.00 36.99 3.33
157 158 3.226884 CGTGTTGGACGGAATTCCT 57.773 52.632 22.05 9.35 44.85 3.36
163 164 0.838554 TGGACGGAATTCCTGACCCA 60.839 55.000 22.05 20.43 36.51 4.51
171 172 4.988716 TCCTGACCCACGTCCGCT 62.989 66.667 0.00 0.00 38.32 5.52
177 178 4.680237 CCCACGTCCGCTGCTTGA 62.680 66.667 0.00 0.00 0.00 3.02
182 183 0.320771 ACGTCCGCTGCTTGAAAGAT 60.321 50.000 0.00 0.00 0.00 2.40
189 190 2.028523 CGCTGCTTGAAAGATCGTGTAG 59.971 50.000 0.00 0.00 0.00 2.74
208 209 1.149148 GTCCAGCACGGTTTCTTCTC 58.851 55.000 0.00 0.00 35.57 2.87
209 210 0.756294 TCCAGCACGGTTTCTTCTCA 59.244 50.000 0.00 0.00 35.57 3.27
210 211 0.868406 CCAGCACGGTTTCTTCTCAC 59.132 55.000 0.00 0.00 0.00 3.51
211 212 0.868406 CAGCACGGTTTCTTCTCACC 59.132 55.000 0.00 0.00 0.00 4.02
212 213 0.250338 AGCACGGTTTCTTCTCACCC 60.250 55.000 0.00 0.00 0.00 4.61
215 216 0.250338 ACGGTTTCTTCTCACCCTGC 60.250 55.000 0.00 0.00 0.00 4.85
216 217 0.035458 CGGTTTCTTCTCACCCTGCT 59.965 55.000 0.00 0.00 0.00 4.24
218 219 1.611936 GGTTTCTTCTCACCCTGCTCC 60.612 57.143 0.00 0.00 0.00 4.70
219 220 0.321671 TTTCTTCTCACCCTGCTCCG 59.678 55.000 0.00 0.00 0.00 4.63
220 221 1.544825 TTCTTCTCACCCTGCTCCGG 61.545 60.000 0.00 0.00 0.00 5.14
221 222 1.984570 CTTCTCACCCTGCTCCGGA 60.985 63.158 2.93 2.93 0.00 5.14
222 223 1.306141 TTCTCACCCTGCTCCGGAT 60.306 57.895 3.57 0.00 0.00 4.18
244 245 1.461559 GATGCTCTGCTGCCTTTTCT 58.538 50.000 0.00 0.00 0.00 2.52
245 246 1.132643 GATGCTCTGCTGCCTTTTCTG 59.867 52.381 0.00 0.00 0.00 3.02
246 247 0.892358 TGCTCTGCTGCCTTTTCTGG 60.892 55.000 0.00 0.00 0.00 3.86
247 248 1.593296 GCTCTGCTGCCTTTTCTGGG 61.593 60.000 0.00 0.00 0.00 4.45
253 254 3.804193 GCCTTTTCTGGGCTCGCG 61.804 66.667 0.00 0.00 45.57 5.87
265 274 0.179145 GGCTCGCGCTAGTTCAAGTA 60.179 55.000 10.92 0.00 36.09 2.24
307 320 2.119391 ATTTTGGCTCGCCCCCAA 59.881 55.556 5.33 0.00 40.43 4.12
309 322 0.909133 ATTTTGGCTCGCCCCCAATT 60.909 50.000 5.33 0.00 41.64 2.32
355 368 4.382345 AATGCTGCTGGCTTTTATCTTC 57.618 40.909 0.00 0.00 42.39 2.87
356 369 3.077484 TGCTGCTGGCTTTTATCTTCT 57.923 42.857 0.00 0.00 42.39 2.85
357 370 3.012518 TGCTGCTGGCTTTTATCTTCTC 58.987 45.455 0.00 0.00 42.39 2.87
358 371 2.031437 GCTGCTGGCTTTTATCTTCTCG 59.969 50.000 0.00 0.00 38.06 4.04
359 372 2.009774 TGCTGGCTTTTATCTTCTCGC 58.990 47.619 0.00 0.00 0.00 5.03
360 373 2.009774 GCTGGCTTTTATCTTCTCGCA 58.990 47.619 0.00 0.00 0.00 5.10
363 376 4.615912 GCTGGCTTTTATCTTCTCGCAAAA 60.616 41.667 0.00 0.00 0.00 2.44
364 377 5.446143 TGGCTTTTATCTTCTCGCAAAAA 57.554 34.783 0.00 0.00 0.00 1.94
380 393 1.156736 AAAAATGAGTCTCCACGGCG 58.843 50.000 4.80 4.80 0.00 6.46
383 396 0.034896 AATGAGTCTCCACGGCGTTT 59.965 50.000 11.19 0.00 0.00 3.60
384 397 0.892755 ATGAGTCTCCACGGCGTTTA 59.107 50.000 11.19 0.00 0.00 2.01
385 398 0.892755 TGAGTCTCCACGGCGTTTAT 59.107 50.000 11.19 0.00 0.00 1.40
386 399 1.274167 TGAGTCTCCACGGCGTTTATT 59.726 47.619 11.19 0.00 0.00 1.40
387 400 1.659098 GAGTCTCCACGGCGTTTATTG 59.341 52.381 11.19 0.00 0.00 1.90
388 401 0.096454 GTCTCCACGGCGTTTATTGC 59.904 55.000 11.19 0.00 0.00 3.56
389 402 0.320858 TCTCCACGGCGTTTATTGCA 60.321 50.000 11.19 0.00 0.00 4.08
390 403 0.179200 CTCCACGGCGTTTATTGCAC 60.179 55.000 11.19 0.00 0.00 4.57
391 404 0.885150 TCCACGGCGTTTATTGCACA 60.885 50.000 11.19 0.00 0.00 4.57
392 405 0.039978 CCACGGCGTTTATTGCACAA 60.040 50.000 11.19 0.00 0.00 3.33
393 406 1.049251 CACGGCGTTTATTGCACAAC 58.951 50.000 11.19 0.00 0.00 3.32
394 407 0.948678 ACGGCGTTTATTGCACAACT 59.051 45.000 6.77 0.00 0.00 3.16
395 408 1.326576 CGGCGTTTATTGCACAACTG 58.673 50.000 0.00 0.00 0.00 3.16
396 409 1.334599 CGGCGTTTATTGCACAACTGT 60.335 47.619 0.00 0.00 0.00 3.55
397 410 2.096169 CGGCGTTTATTGCACAACTGTA 60.096 45.455 0.00 0.00 0.00 2.74
398 411 3.607310 CGGCGTTTATTGCACAACTGTAA 60.607 43.478 0.00 0.00 0.00 2.41
399 412 4.291783 GGCGTTTATTGCACAACTGTAAA 58.708 39.130 0.00 0.00 0.00 2.01
400 413 4.920927 GGCGTTTATTGCACAACTGTAAAT 59.079 37.500 0.00 0.00 0.00 1.40
401 414 5.404066 GGCGTTTATTGCACAACTGTAAATT 59.596 36.000 0.00 0.00 0.00 1.82
402 415 6.074034 GGCGTTTATTGCACAACTGTAAATTT 60.074 34.615 0.00 0.00 0.00 1.82
403 416 7.341446 GCGTTTATTGCACAACTGTAAATTTT 58.659 30.769 0.00 0.00 0.00 1.82
404 417 7.848539 GCGTTTATTGCACAACTGTAAATTTTT 59.151 29.630 0.00 0.00 0.00 1.94
430 443 7.457024 TCAACATGTAACAGTACTACTAGCA 57.543 36.000 0.00 0.00 0.00 3.49
431 444 8.063200 TCAACATGTAACAGTACTACTAGCAT 57.937 34.615 0.00 0.00 0.00 3.79
432 445 8.528643 TCAACATGTAACAGTACTACTAGCATT 58.471 33.333 0.00 0.00 0.00 3.56
433 446 8.808529 CAACATGTAACAGTACTACTAGCATTC 58.191 37.037 0.00 0.00 0.00 2.67
434 447 8.063200 ACATGTAACAGTACTACTAGCATTCA 57.937 34.615 0.00 0.00 0.00 2.57
435 448 7.974501 ACATGTAACAGTACTACTAGCATTCAC 59.025 37.037 0.00 0.00 0.00 3.18
436 449 6.549061 TGTAACAGTACTACTAGCATTCACG 58.451 40.000 0.00 0.00 0.00 4.35
437 450 4.030134 ACAGTACTACTAGCATTCACGC 57.970 45.455 0.00 0.00 0.00 5.34
438 451 3.442625 ACAGTACTACTAGCATTCACGCA 59.557 43.478 0.00 0.00 0.00 5.24
439 452 4.082408 ACAGTACTACTAGCATTCACGCAA 60.082 41.667 0.00 0.00 0.00 4.85
440 453 4.862574 CAGTACTACTAGCATTCACGCAAA 59.137 41.667 0.00 0.00 0.00 3.68
441 454 5.347635 CAGTACTACTAGCATTCACGCAAAA 59.652 40.000 0.00 0.00 0.00 2.44
442 455 5.929992 AGTACTACTAGCATTCACGCAAAAA 59.070 36.000 0.00 0.00 0.00 1.94
485 498 7.072263 AGCAGACTATTTAGGCAGTAATGAT 57.928 36.000 0.00 0.00 32.29 2.45
486 499 8.195165 AGCAGACTATTTAGGCAGTAATGATA 57.805 34.615 0.00 0.00 32.29 2.15
487 500 8.651389 AGCAGACTATTTAGGCAGTAATGATAA 58.349 33.333 0.00 0.00 32.29 1.75
488 501 9.442047 GCAGACTATTTAGGCAGTAATGATAAT 57.558 33.333 0.00 0.00 32.29 1.28
498 511 5.334724 GGCAGTAATGATAATGAAGCAGAGC 60.335 44.000 0.00 0.00 0.00 4.09
500 513 6.656945 CAGTAATGATAATGAAGCAGAGCAC 58.343 40.000 0.00 0.00 0.00 4.40
511 524 4.580167 TGAAGCAGAGCACATAACTTTTGT 59.420 37.500 0.00 0.00 0.00 2.83
531 544 8.973835 TTTTGTCTGTTAAACTCGTTGAAATT 57.026 26.923 0.00 0.00 0.00 1.82
532 545 8.973835 TTTGTCTGTTAAACTCGTTGAAATTT 57.026 26.923 0.00 0.00 0.00 1.82
533 546 8.609478 TTGTCTGTTAAACTCGTTGAAATTTC 57.391 30.769 11.41 11.41 0.00 2.17
534 547 7.981142 TGTCTGTTAAACTCGTTGAAATTTCT 58.019 30.769 18.64 0.00 0.00 2.52
535 548 7.908082 TGTCTGTTAAACTCGTTGAAATTTCTG 59.092 33.333 18.64 9.07 0.00 3.02
536 549 6.910433 TCTGTTAAACTCGTTGAAATTTCTGC 59.090 34.615 18.64 10.33 0.00 4.26
537 550 5.974751 TGTTAAACTCGTTGAAATTTCTGCC 59.025 36.000 18.64 6.09 0.00 4.85
538 551 4.647424 AAACTCGTTGAAATTTCTGCCA 57.353 36.364 18.64 0.00 0.00 4.92
539 552 4.647424 AACTCGTTGAAATTTCTGCCAA 57.353 36.364 18.64 3.04 0.00 4.52
540 553 4.647424 ACTCGTTGAAATTTCTGCCAAA 57.353 36.364 18.64 2.03 0.00 3.28
541 554 5.004922 ACTCGTTGAAATTTCTGCCAAAA 57.995 34.783 18.64 1.32 0.00 2.44
547 560 5.927954 TGAAATTTCTGCCAAAATTCTGC 57.072 34.783 18.64 0.00 37.75 4.26
561 574 5.596836 AAATTCTGCTCTGGAAAAACACA 57.403 34.783 0.00 0.00 0.00 3.72
579 592 4.881920 ACACAAAATCCAGTGTTATTGCC 58.118 39.130 0.00 0.00 46.04 4.52
580 593 4.343526 ACACAAAATCCAGTGTTATTGCCA 59.656 37.500 0.00 0.00 46.04 4.92
595 608 4.882671 ATTGCCAAAGCTATCTTGTACG 57.117 40.909 0.00 0.00 40.80 3.67
599 612 3.802685 GCCAAAGCTATCTTGTACGGTAG 59.197 47.826 0.00 0.00 35.50 3.18
600 613 4.441079 GCCAAAGCTATCTTGTACGGTAGA 60.441 45.833 0.00 0.00 35.50 2.59
602 615 6.516194 GCCAAAGCTATCTTGTACGGTAGATA 60.516 42.308 10.13 10.13 33.38 1.98
603 616 7.431249 CCAAAGCTATCTTGTACGGTAGATAA 58.569 38.462 11.16 0.00 34.05 1.75
604 617 7.595502 CCAAAGCTATCTTGTACGGTAGATAAG 59.404 40.741 11.16 2.02 34.05 1.73
605 618 7.820578 AAGCTATCTTGTACGGTAGATAAGT 57.179 36.000 11.16 2.70 34.05 2.24
606 619 8.915057 AAGCTATCTTGTACGGTAGATAAGTA 57.085 34.615 11.16 0.00 34.05 2.24
607 620 8.321650 AGCTATCTTGTACGGTAGATAAGTAC 57.678 38.462 11.16 0.00 40.61 2.73
609 622 8.782144 GCTATCTTGTACGGTAGATAAGTACTT 58.218 37.037 13.68 13.68 40.77 2.24
611 624 7.559590 TCTTGTACGGTAGATAAGTACTTCC 57.440 40.000 12.39 5.80 40.77 3.46
612 625 7.341805 TCTTGTACGGTAGATAAGTACTTCCT 58.658 38.462 12.39 12.80 40.77 3.36
615 662 6.765036 TGTACGGTAGATAAGTACTTCCTCTG 59.235 42.308 22.07 15.88 40.77 3.35
630 677 9.152595 GTACTTCCTCTGTAACTTTTCATAAGG 57.847 37.037 0.00 0.00 0.00 2.69
655 702 2.885135 TTAGAGTCCAGGACACCGTA 57.115 50.000 22.31 2.27 34.60 4.02
693 741 6.821031 ATTAAGTACATAGGGAGTAGCTCG 57.179 41.667 0.00 0.00 0.00 5.03
740 791 3.507622 GGCTTAATCTGGTCAAAACAGCT 59.492 43.478 0.00 0.00 35.94 4.24
743 794 6.086871 GCTTAATCTGGTCAAAACAGCTAAC 58.913 40.000 0.00 0.00 35.94 2.34
751 802 2.041244 CAAAACAGCTAACGCGAAACC 58.959 47.619 15.93 0.00 42.32 3.27
764 819 3.058501 ACGCGAAACCAGGATAGTTTTTG 60.059 43.478 15.93 0.00 37.55 2.44
778 833 3.421844 AGTTTTTGGGTGGCATACTCTC 58.578 45.455 0.00 0.00 0.00 3.20
781 836 2.787473 TTGGGTGGCATACTCTCAAG 57.213 50.000 0.00 0.00 0.00 3.02
782 837 1.656587 TGGGTGGCATACTCTCAAGT 58.343 50.000 0.00 0.00 39.66 3.16
791 850 3.430098 GCATACTCTCAAGTCCAGGAGTG 60.430 52.174 0.00 0.00 39.09 3.51
795 854 2.430332 CTCTCAAGTCCAGGAGTGATCC 59.570 54.545 0.00 0.00 32.93 3.36
844 903 2.846193 TGAGTGGAAAAGGAAGTTCCG 58.154 47.619 16.31 0.00 46.47 4.30
907 970 3.002759 GTCCTCATCGCATTTCTTAAGCC 59.997 47.826 0.00 0.00 0.00 4.35
920 983 3.728845 TCTTAAGCCGAACATATCTGCC 58.271 45.455 0.00 0.00 38.91 4.85
1368 1447 0.107703 CCGAGCAGGTCTGGCAATTA 60.108 55.000 0.00 0.00 34.51 1.40
1431 1510 9.716531 ATGTCATGTAATCATCGTAGAATGATT 57.283 29.630 14.48 14.48 43.58 2.57
1728 1813 2.158449 CAGTTCTCGTCATTGCAAGTCC 59.842 50.000 4.94 0.00 0.00 3.85
1865 1951 2.154462 GCTGGAGCTTGTTACACATGT 58.846 47.619 0.00 0.00 38.21 3.21
1901 1987 8.881262 TCCTTTTCCCATTATAGAGAGTAATCC 58.119 37.037 0.00 0.00 0.00 3.01
1904 1990 7.554959 TTCCCATTATAGAGAGTAATCCACC 57.445 40.000 0.00 0.00 0.00 4.61
1916 2002 4.426704 AGTAATCCACCACTACCTCAGTT 58.573 43.478 0.00 0.00 34.26 3.16
1930 2016 9.003658 CACTACCTCAGTTTCAAAATGTAAGAT 57.996 33.333 0.00 0.00 34.26 2.40
1966 2074 7.604545 GGCTTATATTTTGAGATGGAGGTAGTC 59.395 40.741 0.00 0.00 0.00 2.59
2152 2260 6.074356 GCACCAAAACAACATGAACTGTAATC 60.074 38.462 0.00 0.00 36.98 1.75
2191 2299 3.674997 CTGGCTTTACACTTAGGCTTCA 58.325 45.455 0.00 0.00 37.78 3.02
2199 2307 7.171678 GCTTTACACTTAGGCTTCAGTATATGG 59.828 40.741 0.00 0.00 0.00 2.74
2566 2680 6.543465 CCTTTGCTCATTGATATACTCCAACA 59.457 38.462 0.00 0.00 0.00 3.33
2743 6055 6.561614 ACTTCCGCATATATATTAGTGGTCG 58.438 40.000 13.31 9.58 33.50 4.79
2769 6081 5.891551 AGTTTTAGAACCTTGACCACATGTT 59.108 36.000 0.00 0.00 36.39 2.71
2819 6132 7.403312 TTTACCATATGTCCAACAGAATTGG 57.597 36.000 1.24 0.00 40.87 3.16
2858 6192 3.500680 GCGGGAAGAAAACTGATGTTGTA 59.499 43.478 0.00 0.00 36.39 2.41
2860 6194 4.755123 CGGGAAGAAAACTGATGTTGTAGT 59.245 41.667 0.00 0.00 36.39 2.73
3026 6360 8.068380 AGAGAATTTTCACTGTACGCTTTTTAC 58.932 33.333 0.00 0.00 0.00 2.01
3041 6375 5.666878 CGCTTTTTACGACGTCATCTATTTG 59.333 40.000 17.16 0.00 0.00 2.32
3069 6403 9.686683 AAAACAGATGGAGTATTGCTAGTTTAT 57.313 29.630 0.00 0.00 0.00 1.40
3218 6552 1.251251 GCAGGTGCACAAGAAGGATT 58.749 50.000 20.43 0.00 41.59 3.01
3391 6725 4.121317 TGTTGTTAACTGAAGGTACACGG 58.879 43.478 7.22 0.00 0.00 4.94
4167 7505 3.362870 TGGCACATCACCATTGTATCA 57.637 42.857 0.00 0.00 30.29 2.15
4188 7526 6.343716 TCATTGGTTGTGCATATTTCACTT 57.656 33.333 0.00 0.00 35.58 3.16
4203 7541 9.177608 CATATTTCACTTCTTCCAATGGAACTA 57.822 33.333 11.23 0.00 36.71 2.24
4208 7546 7.159372 TCACTTCTTCCAATGGAACTAGTAAC 58.841 38.462 11.23 0.00 36.71 2.50
4222 7560 1.797025 AGTAACTCCGTTCAGCTTGC 58.203 50.000 0.00 0.00 0.00 4.01
4223 7561 1.070134 AGTAACTCCGTTCAGCTTGCA 59.930 47.619 0.00 0.00 0.00 4.08
4239 7577 4.349048 AGCTTGCACCCTATGAATGATCTA 59.651 41.667 0.00 0.00 0.00 1.98
4286 7626 9.294030 CTGTTTACAGATTTGCCTTTCATATTC 57.706 33.333 3.80 0.00 46.59 1.75
4288 7628 9.638239 GTTTACAGATTTGCCTTTCATATTCAA 57.362 29.630 0.00 0.00 0.00 2.69
4292 7632 9.374838 ACAGATTTGCCTTTCATATTCAAATTC 57.625 29.630 0.00 0.00 37.45 2.17
4325 7665 7.398829 TGAATGTTTGTTGGCCTAATAGTAGA 58.601 34.615 3.32 0.00 0.00 2.59
4338 7678 9.262358 GGCCTAATAGTAGATTACTCTGTTTTG 57.738 37.037 0.00 0.00 40.14 2.44
4993 8337 7.384477 ACTAATGTAACTCAGGTACAAACTCC 58.616 38.462 6.67 0.00 0.00 3.85
5062 8407 7.890515 TCTGTTGTGCCATCATTTATTGTTTA 58.109 30.769 0.00 0.00 0.00 2.01
5155 8500 6.928348 TTTTCAGTGTTACCTCCTAGATGA 57.072 37.500 0.00 0.00 0.00 2.92
5256 8601 4.700213 GGCTCATCTAAGCTAACCACAAAA 59.300 41.667 0.00 0.00 42.13 2.44
5259 8604 6.293955 GCTCATCTAAGCTAACCACAAAAACA 60.294 38.462 0.00 0.00 39.27 2.83
5260 8605 7.575720 GCTCATCTAAGCTAACCACAAAAACAT 60.576 37.037 0.00 0.00 39.27 2.71
5261 8606 8.856153 TCATCTAAGCTAACCACAAAAACATA 57.144 30.769 0.00 0.00 0.00 2.29
5262 8607 9.461312 TCATCTAAGCTAACCACAAAAACATAT 57.539 29.630 0.00 0.00 0.00 1.78
5263 8608 9.507280 CATCTAAGCTAACCACAAAAACATATG 57.493 33.333 0.00 0.00 0.00 1.78
5265 8610 8.511321 TCTAAGCTAACCACAAAAACATATGTG 58.489 33.333 9.63 0.00 45.06 3.21
5325 8670 7.410485 GCTACATCAATTAGCTTGTTTAGGTC 58.590 38.462 0.00 0.00 39.17 3.85
5339 8684 4.634004 TGTTTAGGTCGAGCCATATGTTTG 59.366 41.667 11.73 0.00 40.61 2.93
5344 8689 3.181500 GGTCGAGCCATATGTTTGGTTTC 60.181 47.826 2.39 0.00 39.11 2.78
5355 8700 7.364056 CCATATGTTTGGTTTCATGATGGTCTT 60.364 37.037 0.00 0.00 31.74 3.01
5363 8708 5.591877 GGTTTCATGATGGTCTTTGCTAGAT 59.408 40.000 0.00 0.00 34.79 1.98
5364 8709 6.096001 GGTTTCATGATGGTCTTTGCTAGATT 59.904 38.462 0.00 0.00 34.79 2.40
5365 8710 7.363268 GGTTTCATGATGGTCTTTGCTAGATTT 60.363 37.037 0.00 0.00 34.79 2.17
5366 8711 7.707624 TTCATGATGGTCTTTGCTAGATTTT 57.292 32.000 0.00 0.00 34.79 1.82
5367 8712 7.707624 TCATGATGGTCTTTGCTAGATTTTT 57.292 32.000 0.00 0.00 34.79 1.94
5393 8739 2.566833 ACTGTTGCAGCCAGATTACA 57.433 45.000 18.98 3.28 34.37 2.41
5471 8821 0.250234 TGGCCCATCTTTCTCTGACG 59.750 55.000 0.00 0.00 0.00 4.35
5473 8823 1.472376 GGCCCATCTTTCTCTGACGAG 60.472 57.143 0.00 0.00 38.67 4.18
5481 8831 5.344743 TCTTTCTCTGACGAGCCATTATT 57.655 39.130 0.00 0.00 37.19 1.40
5483 8833 2.826428 TCTCTGACGAGCCATTATTGC 58.174 47.619 0.00 0.00 37.19 3.56
5496 8846 7.222417 CGAGCCATTATTGCATTGACATTTTTA 59.778 33.333 0.00 0.00 0.00 1.52
5497 8847 8.428186 AGCCATTATTGCATTGACATTTTTAG 57.572 30.769 0.00 0.00 0.00 1.85
5498 8848 8.259411 AGCCATTATTGCATTGACATTTTTAGA 58.741 29.630 0.00 0.00 0.00 2.10
5499 8849 9.048446 GCCATTATTGCATTGACATTTTTAGAT 57.952 29.630 0.00 0.00 0.00 1.98
5505 8855 8.999220 TTGCATTGACATTTTTAGATATTGCA 57.001 26.923 0.00 0.00 33.81 4.08
5616 8972 7.122650 AGCATTGCTTAAAGCCTTAAACAGATA 59.877 33.333 5.03 0.00 41.51 1.98
5617 8973 7.433425 GCATTGCTTAAAGCCTTAAACAGATAG 59.567 37.037 0.16 0.00 41.51 2.08
5864 9220 8.161425 TCCTACTTATATTTCCCCTGTATTTGC 58.839 37.037 0.00 0.00 0.00 3.68
6049 9405 7.730364 AATTGTTAGCATCCTTATAACCTCG 57.270 36.000 0.00 0.00 0.00 4.63
6081 9452 6.827586 TGCCCAAATTGGTTTACTAGTAAG 57.172 37.500 14.73 1.99 35.17 2.34
6198 9572 1.638133 CTCCAGAATGTCTGCTGTCG 58.362 55.000 0.00 0.00 42.98 4.35
6322 9713 6.547510 ACTCTTTTGTGGTCTTTCAGCTTTAT 59.452 34.615 0.00 0.00 0.00 1.40
6366 9758 6.534475 TCATTTGATCTTCCAAGGAAATGG 57.466 37.500 2.78 0.00 42.12 3.16
6577 9969 9.745323 GCATGCAAATTAAGTGAATAGAAAAAC 57.255 29.630 14.21 0.00 0.00 2.43
7042 10436 4.262894 CGGAGTTATGCAGGTGGGTATTAT 60.263 45.833 0.00 0.00 0.00 1.28
7059 10453 5.163652 GGTATTATCTGTTTCAGTGGCCAAC 60.164 44.000 7.24 1.14 32.61 3.77
7075 10473 3.375299 GGCCAACACTTGTCTATGACATC 59.625 47.826 0.00 0.00 42.40 3.06
7100 10498 2.744202 AGTTTGCAGCGATTGGTTCTAG 59.256 45.455 0.00 0.00 0.00 2.43
7282 10681 6.834168 ATGATTACGAAAATCCCACAAACT 57.166 33.333 11.07 0.00 0.00 2.66
7288 10687 4.583073 ACGAAAATCCCACAAACTAAAGCT 59.417 37.500 0.00 0.00 0.00 3.74
7338 10737 5.940470 GTCTTTGTCATCCTTGGTGTATTCT 59.060 40.000 0.00 0.00 0.00 2.40
7448 10847 1.073199 GGTAGCACTTGTGTGGGCT 59.927 57.895 2.61 0.00 43.97 5.19
7474 10873 0.887247 TGCGTTGGCATTGCACTATT 59.113 45.000 11.39 0.00 46.21 1.73
7487 10886 7.095102 GGCATTGCACTATTTGTCAAAAAGAAT 60.095 33.333 11.39 0.00 0.00 2.40
7543 10942 0.952984 TCACGCAATTGACCGATGCA 60.953 50.000 10.34 0.00 40.04 3.96
7890 11328 6.200878 ACTTTCTTCCCACAGAAGGAATTA 57.799 37.500 2.81 0.00 46.87 1.40
7924 11362 7.623278 TCAATTAAGGCCTTTCTATTTCCCATT 59.377 33.333 26.08 0.00 0.00 3.16
7927 11365 9.674705 ATTAAGGCCTTTCTATTTCCCATTTAT 57.325 29.630 26.08 0.00 0.00 1.40
8006 11449 8.791327 TCTTTTCTTTTCTTTTCTTTGGCAAT 57.209 26.923 0.00 0.00 0.00 3.56
8090 11533 3.038710 GTTTCTCTTGCTGCAAAGAACG 58.961 45.455 25.42 13.23 35.79 3.95
8116 11559 3.004002 CCGACAGTGGGGTTTAGTTTTTC 59.996 47.826 0.00 0.00 0.00 2.29
8117 11560 3.881089 CGACAGTGGGGTTTAGTTTTTCT 59.119 43.478 0.00 0.00 0.00 2.52
8130 11573 9.337091 GGTTTAGTTTTTCTTTTTCTTTTTGGC 57.663 29.630 0.00 0.00 0.00 4.52
8154 11597 2.706339 AGCCACTATTCTGCAGAAGG 57.294 50.000 31.14 26.29 37.48 3.46
8381 11826 5.180117 GCCATGACCACAACATATATGTCTC 59.820 44.000 18.52 8.97 40.80 3.36
8422 11867 6.937465 TGCCAACATGTACAATAAGTGAAGTA 59.063 34.615 0.00 0.00 0.00 2.24
8493 11951 8.335532 ACTTCAAAAAGAAAAAGAAAAAGGGG 57.664 30.769 0.00 0.00 35.40 4.79
8494 11952 7.942341 ACTTCAAAAAGAAAAAGAAAAAGGGGT 59.058 29.630 0.00 0.00 35.40 4.95
8495 11953 9.443323 CTTCAAAAAGAAAAAGAAAAAGGGGTA 57.557 29.630 0.00 0.00 35.40 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.079336 AAACGAGGAAGCTACCGGC 60.079 57.895 0.00 0.00 42.19 6.13
19 20 0.459759 GGAAACGAGGAAGCTACCGG 60.460 60.000 0.00 0.00 34.73 5.28
20 21 0.459759 GGGAAACGAGGAAGCTACCG 60.460 60.000 0.00 0.00 34.73 4.02
21 22 0.611714 TGGGAAACGAGGAAGCTACC 59.388 55.000 0.00 0.00 0.00 3.18
22 23 2.347731 CTTGGGAAACGAGGAAGCTAC 58.652 52.381 0.00 0.00 0.00 3.58
23 24 2.762535 CTTGGGAAACGAGGAAGCTA 57.237 50.000 0.00 0.00 0.00 3.32
24 25 3.633361 CTTGGGAAACGAGGAAGCT 57.367 52.632 0.00 0.00 0.00 3.74
30 31 0.955919 GAGTGGCCTTGGGAAACGAG 60.956 60.000 3.32 0.00 0.00 4.18
31 32 1.072505 GAGTGGCCTTGGGAAACGA 59.927 57.895 3.32 0.00 0.00 3.85
32 33 1.073199 AGAGTGGCCTTGGGAAACG 59.927 57.895 3.32 0.00 0.00 3.60
33 34 0.895559 CCAGAGTGGCCTTGGGAAAC 60.896 60.000 3.32 0.00 0.00 2.78
34 35 1.360393 ACCAGAGTGGCCTTGGGAAA 61.360 55.000 16.78 0.00 42.67 3.13
35 36 1.774217 ACCAGAGTGGCCTTGGGAA 60.774 57.895 16.78 0.00 42.67 3.97
36 37 2.121963 ACCAGAGTGGCCTTGGGA 60.122 61.111 16.78 0.00 42.67 4.37
37 38 2.352805 GACCAGAGTGGCCTTGGG 59.647 66.667 16.78 8.87 42.67 4.12
38 39 1.903877 ATCGACCAGAGTGGCCTTGG 61.904 60.000 3.32 9.41 42.67 3.61
39 40 0.742281 CATCGACCAGAGTGGCCTTG 60.742 60.000 3.32 0.00 42.67 3.61
40 41 0.904865 TCATCGACCAGAGTGGCCTT 60.905 55.000 3.32 0.00 42.67 4.35
41 42 0.689080 ATCATCGACCAGAGTGGCCT 60.689 55.000 3.32 0.00 42.67 5.19
42 43 0.179000 AATCATCGACCAGAGTGGCC 59.821 55.000 0.00 0.00 42.67 5.36
43 44 1.293924 CAATCATCGACCAGAGTGGC 58.706 55.000 0.00 0.00 42.67 5.01
44 45 1.293924 GCAATCATCGACCAGAGTGG 58.706 55.000 11.90 0.00 45.02 4.00
45 46 0.926155 CGCAATCATCGACCAGAGTG 59.074 55.000 7.25 7.25 33.37 3.51
46 47 0.807667 GCGCAATCATCGACCAGAGT 60.808 55.000 0.30 0.00 0.00 3.24
47 48 1.815212 CGCGCAATCATCGACCAGAG 61.815 60.000 8.75 0.00 0.00 3.35
48 49 1.878069 CGCGCAATCATCGACCAGA 60.878 57.895 8.75 0.00 0.00 3.86
49 50 2.622629 CGCGCAATCATCGACCAG 59.377 61.111 8.75 0.00 0.00 4.00
50 51 2.889988 CCGCGCAATCATCGACCA 60.890 61.111 8.75 0.00 0.00 4.02
51 52 2.871427 GACCGCGCAATCATCGACC 61.871 63.158 8.75 0.00 0.00 4.79
52 53 1.421410 AAGACCGCGCAATCATCGAC 61.421 55.000 8.75 0.00 0.00 4.20
53 54 1.145759 GAAGACCGCGCAATCATCGA 61.146 55.000 8.75 0.00 0.00 3.59
54 55 1.273887 GAAGACCGCGCAATCATCG 59.726 57.895 8.75 0.00 0.00 3.84
55 56 0.811616 AGGAAGACCGCGCAATCATC 60.812 55.000 8.75 6.39 41.83 2.92
56 57 0.811616 GAGGAAGACCGCGCAATCAT 60.812 55.000 8.75 0.00 41.83 2.45
57 58 1.447838 GAGGAAGACCGCGCAATCA 60.448 57.895 8.75 0.00 41.83 2.57
58 59 2.174319 GGAGGAAGACCGCGCAATC 61.174 63.158 8.75 3.57 41.83 2.67
59 60 2.125106 GGAGGAAGACCGCGCAAT 60.125 61.111 8.75 0.00 41.83 3.56
60 61 3.311110 AGGAGGAAGACCGCGCAA 61.311 61.111 8.75 0.00 41.83 4.85
61 62 4.069232 CAGGAGGAAGACCGCGCA 62.069 66.667 8.75 0.00 41.83 6.09
62 63 4.821589 CCAGGAGGAAGACCGCGC 62.822 72.222 0.00 0.00 41.83 6.86
63 64 2.050350 TACCAGGAGGAAGACCGCG 61.050 63.158 0.00 0.00 41.83 6.46
64 65 1.255667 TGTACCAGGAGGAAGACCGC 61.256 60.000 0.00 0.00 41.83 5.68
65 66 0.531200 GTGTACCAGGAGGAAGACCG 59.469 60.000 0.00 0.00 41.83 4.79
66 67 0.903236 GGTGTACCAGGAGGAAGACC 59.097 60.000 0.00 0.00 38.69 3.85
67 68 0.903236 GGGTGTACCAGGAGGAAGAC 59.097 60.000 3.11 0.00 39.85 3.01
68 69 0.252558 GGGGTGTACCAGGAGGAAGA 60.253 60.000 3.11 0.00 42.91 2.87
69 70 0.252742 AGGGGTGTACCAGGAGGAAG 60.253 60.000 3.11 0.00 42.91 3.46
70 71 1.095130 TAGGGGTGTACCAGGAGGAA 58.905 55.000 3.11 0.00 42.91 3.36
71 72 0.337428 GTAGGGGTGTACCAGGAGGA 59.663 60.000 3.11 0.00 42.91 3.71
72 73 1.041447 CGTAGGGGTGTACCAGGAGG 61.041 65.000 3.11 0.00 42.91 4.30
73 74 0.324091 ACGTAGGGGTGTACCAGGAG 60.324 60.000 3.11 0.00 42.91 3.69
74 75 0.323725 GACGTAGGGGTGTACCAGGA 60.324 60.000 3.11 0.00 42.91 3.86
75 76 1.660560 CGACGTAGGGGTGTACCAGG 61.661 65.000 3.11 0.00 42.91 4.45
76 77 0.962356 ACGACGTAGGGGTGTACCAG 60.962 60.000 0.00 0.00 42.91 4.00
77 78 1.074775 ACGACGTAGGGGTGTACCA 59.925 57.895 0.00 0.00 42.91 3.25
78 79 1.508088 CACGACGTAGGGGTGTACC 59.492 63.158 0.00 0.00 39.11 3.34
79 80 1.153958 GCACGACGTAGGGGTGTAC 60.154 63.158 0.00 0.00 37.20 2.90
80 81 2.342650 GGCACGACGTAGGGGTGTA 61.343 63.158 0.00 0.00 37.20 2.90
81 82 3.688159 GGCACGACGTAGGGGTGT 61.688 66.667 0.00 0.00 37.20 4.16
117 118 2.155197 AAGGGCCATGTCCTTGGGAC 62.155 60.000 6.18 9.53 46.78 4.46
118 119 1.856873 AAGGGCCATGTCCTTGGGA 60.857 57.895 6.18 0.00 46.78 4.37
119 120 2.772924 AAGGGCCATGTCCTTGGG 59.227 61.111 6.18 0.00 46.78 4.12
123 124 0.035439 CACGTTAAGGGCCATGTCCT 60.035 55.000 6.18 0.00 40.63 3.85
124 125 0.322187 ACACGTTAAGGGCCATGTCC 60.322 55.000 6.18 0.00 0.00 4.02
125 126 1.199097 CAACACGTTAAGGGCCATGTC 59.801 52.381 6.18 0.00 0.00 3.06
126 127 1.243902 CAACACGTTAAGGGCCATGT 58.756 50.000 6.18 0.00 0.00 3.21
127 128 0.525761 CCAACACGTTAAGGGCCATG 59.474 55.000 6.18 0.00 0.00 3.66
128 129 0.402504 TCCAACACGTTAAGGGCCAT 59.597 50.000 6.18 0.00 0.00 4.40
129 130 0.535553 GTCCAACACGTTAAGGGCCA 60.536 55.000 6.18 0.00 0.00 5.36
130 131 1.571215 CGTCCAACACGTTAAGGGCC 61.571 60.000 0.00 0.00 44.07 5.80
131 132 1.864176 CGTCCAACACGTTAAGGGC 59.136 57.895 0.00 0.00 44.07 5.19
140 141 1.804748 GTCAGGAATTCCGTCCAACAC 59.195 52.381 18.82 5.47 40.48 3.32
145 146 0.392595 GTGGGTCAGGAATTCCGTCC 60.393 60.000 18.82 19.54 42.08 4.79
163 164 0.320771 ATCTTTCAAGCAGCGGACGT 60.321 50.000 0.00 0.00 0.00 4.34
171 172 3.006430 TGGACTACACGATCTTTCAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
177 178 2.960819 GTGCTGGACTACACGATCTTT 58.039 47.619 0.00 0.00 0.00 2.52
189 190 1.149148 GAGAAGAAACCGTGCTGGAC 58.851 55.000 2.38 0.00 42.00 4.02
218 219 1.664017 CAGCAGAGCATCCGATCCG 60.664 63.158 0.00 0.00 33.66 4.18
219 220 1.960250 GCAGCAGAGCATCCGATCC 60.960 63.158 0.00 0.00 33.66 3.36
220 221 1.960250 GGCAGCAGAGCATCCGATC 60.960 63.158 0.00 0.00 33.66 3.69
221 222 1.980784 AAGGCAGCAGAGCATCCGAT 61.981 55.000 0.00 0.00 33.66 4.18
222 223 2.189191 AAAGGCAGCAGAGCATCCGA 62.189 55.000 0.00 0.00 33.66 4.55
249 250 5.404946 ACTTAATTACTTGAACTAGCGCGA 58.595 37.500 12.10 0.00 0.00 5.87
250 251 5.515626 AGACTTAATTACTTGAACTAGCGCG 59.484 40.000 0.00 0.00 0.00 6.86
252 253 6.255887 CCCAGACTTAATTACTTGAACTAGCG 59.744 42.308 0.00 0.00 0.00 4.26
253 254 7.328737 TCCCAGACTTAATTACTTGAACTAGC 58.671 38.462 0.00 0.00 0.00 3.42
265 274 2.774809 GCTCCTCCTCCCAGACTTAATT 59.225 50.000 0.00 0.00 0.00 1.40
307 320 3.152341 CAAACTGTCTTCCTCCAGCAAT 58.848 45.455 0.00 0.00 31.76 3.56
309 322 1.202806 CCAAACTGTCTTCCTCCAGCA 60.203 52.381 0.00 0.00 31.76 4.41
363 376 0.034896 AACGCCGTGGAGACTCATTT 59.965 50.000 4.53 0.00 0.00 2.32
364 377 0.034896 AAACGCCGTGGAGACTCATT 59.965 50.000 4.53 0.00 0.00 2.57
365 378 0.892755 TAAACGCCGTGGAGACTCAT 59.107 50.000 4.53 0.00 0.00 2.90
366 379 0.892755 ATAAACGCCGTGGAGACTCA 59.107 50.000 4.53 0.00 0.00 3.41
367 380 1.659098 CAATAAACGCCGTGGAGACTC 59.341 52.381 0.00 0.00 0.00 3.36
368 381 1.722011 CAATAAACGCCGTGGAGACT 58.278 50.000 0.00 0.00 0.00 3.24
369 382 0.096454 GCAATAAACGCCGTGGAGAC 59.904 55.000 0.00 0.00 0.00 3.36
371 384 0.179200 GTGCAATAAACGCCGTGGAG 60.179 55.000 0.00 0.00 0.00 3.86
374 387 1.049251 GTTGTGCAATAAACGCCGTG 58.951 50.000 0.00 0.00 0.00 4.94
375 388 0.948678 AGTTGTGCAATAAACGCCGT 59.051 45.000 0.00 0.00 0.00 5.68
377 390 2.415697 ACAGTTGTGCAATAAACGCC 57.584 45.000 0.00 0.00 0.00 5.68
378 391 6.446659 AATTTACAGTTGTGCAATAAACGC 57.553 33.333 0.00 0.00 0.00 4.84
385 398 9.371136 TGTTGATAAAAATTTACAGTTGTGCAA 57.629 25.926 0.00 0.00 0.00 4.08
386 399 8.932945 TGTTGATAAAAATTTACAGTTGTGCA 57.067 26.923 0.00 0.00 0.00 4.57
387 400 9.796062 CATGTTGATAAAAATTTACAGTTGTGC 57.204 29.630 0.00 0.00 0.00 4.57
404 417 9.181061 TGCTAGTAGTACTGTTACATGTTGATA 57.819 33.333 13.29 0.00 0.00 2.15
405 418 8.063200 TGCTAGTAGTACTGTTACATGTTGAT 57.937 34.615 13.29 0.00 0.00 2.57
406 419 7.457024 TGCTAGTAGTACTGTTACATGTTGA 57.543 36.000 13.29 0.00 0.00 3.18
449 462 9.127277 CCTAAATAGTCTGCTAGTAGAACTCTT 57.873 37.037 12.50 8.22 0.00 2.85
450 463 7.229907 GCCTAAATAGTCTGCTAGTAGAACTCT 59.770 40.741 12.50 8.22 0.00 3.24
451 464 7.013464 TGCCTAAATAGTCTGCTAGTAGAACTC 59.987 40.741 12.50 0.49 0.00 3.01
452 465 6.834451 TGCCTAAATAGTCTGCTAGTAGAACT 59.166 38.462 12.50 13.46 0.00 3.01
453 466 7.040473 TGCCTAAATAGTCTGCTAGTAGAAC 57.960 40.000 12.50 7.14 0.00 3.01
454 467 6.834451 ACTGCCTAAATAGTCTGCTAGTAGAA 59.166 38.462 12.50 0.00 0.00 2.10
455 468 6.366340 ACTGCCTAAATAGTCTGCTAGTAGA 58.634 40.000 6.42 6.42 0.00 2.59
456 469 6.642707 ACTGCCTAAATAGTCTGCTAGTAG 57.357 41.667 0.63 0.63 0.00 2.57
457 470 8.577296 CATTACTGCCTAAATAGTCTGCTAGTA 58.423 37.037 0.00 0.00 0.00 1.82
458 471 7.287927 TCATTACTGCCTAAATAGTCTGCTAGT 59.712 37.037 0.00 0.00 0.00 2.57
470 483 7.992608 TCTGCTTCATTATCATTACTGCCTAAA 59.007 33.333 0.00 0.00 0.00 1.85
471 484 7.508687 TCTGCTTCATTATCATTACTGCCTAA 58.491 34.615 0.00 0.00 0.00 2.69
472 485 7.066307 TCTGCTTCATTATCATTACTGCCTA 57.934 36.000 0.00 0.00 0.00 3.93
485 498 7.040478 ACAAAAGTTATGTGCTCTGCTTCATTA 60.040 33.333 0.00 0.00 0.00 1.90
486 499 5.972107 AAAGTTATGTGCTCTGCTTCATT 57.028 34.783 0.00 0.00 0.00 2.57
487 500 5.242393 ACAAAAGTTATGTGCTCTGCTTCAT 59.758 36.000 0.00 0.00 0.00 2.57
488 501 4.580167 ACAAAAGTTATGTGCTCTGCTTCA 59.420 37.500 0.00 0.00 0.00 3.02
489 502 5.049129 AGACAAAAGTTATGTGCTCTGCTTC 60.049 40.000 0.00 0.00 0.00 3.86
490 503 4.823989 AGACAAAAGTTATGTGCTCTGCTT 59.176 37.500 0.00 0.00 0.00 3.91
498 511 8.120465 ACGAGTTTAACAGACAAAAGTTATGTG 58.880 33.333 0.00 0.00 31.01 3.21
500 513 8.943925 CAACGAGTTTAACAGACAAAAGTTATG 58.056 33.333 0.00 0.00 31.01 1.90
511 524 6.910433 GCAGAAATTTCAACGAGTTTAACAGA 59.090 34.615 19.99 0.00 0.00 3.41
531 544 2.559668 CCAGAGCAGAATTTTGGCAGAA 59.440 45.455 0.00 0.00 0.00 3.02
532 545 2.165167 CCAGAGCAGAATTTTGGCAGA 58.835 47.619 0.00 0.00 0.00 4.26
533 546 2.165167 TCCAGAGCAGAATTTTGGCAG 58.835 47.619 0.00 0.00 0.00 4.85
534 547 2.291209 TCCAGAGCAGAATTTTGGCA 57.709 45.000 0.00 0.00 0.00 4.92
535 548 3.665745 TTTCCAGAGCAGAATTTTGGC 57.334 42.857 0.00 0.00 0.00 4.52
536 549 5.234972 GTGTTTTTCCAGAGCAGAATTTTGG 59.765 40.000 0.00 0.00 0.00 3.28
537 550 5.811613 TGTGTTTTTCCAGAGCAGAATTTTG 59.188 36.000 0.00 0.00 0.00 2.44
538 551 5.976458 TGTGTTTTTCCAGAGCAGAATTTT 58.024 33.333 0.00 0.00 0.00 1.82
539 552 5.596836 TGTGTTTTTCCAGAGCAGAATTT 57.403 34.783 0.00 0.00 0.00 1.82
540 553 5.596836 TTGTGTTTTTCCAGAGCAGAATT 57.403 34.783 0.00 0.00 0.00 2.17
541 554 5.596836 TTTGTGTTTTTCCAGAGCAGAAT 57.403 34.783 0.00 0.00 0.00 2.40
561 574 4.996758 GCTTTGGCAATAACACTGGATTTT 59.003 37.500 0.00 0.00 38.54 1.82
579 592 8.136165 ACTTATCTACCGTACAAGATAGCTTTG 58.864 37.037 0.00 0.00 36.38 2.77
580 593 8.235359 ACTTATCTACCGTACAAGATAGCTTT 57.765 34.615 0.00 0.00 36.38 3.51
595 608 8.750515 AGTTACAGAGGAAGTACTTATCTACC 57.249 38.462 17.94 11.12 0.00 3.18
599 612 9.924650 TGAAAAGTTACAGAGGAAGTACTTATC 57.075 33.333 8.42 9.92 0.00 1.75
603 616 9.930693 CTTATGAAAAGTTACAGAGGAAGTACT 57.069 33.333 0.00 0.00 0.00 2.73
604 617 9.152595 CCTTATGAAAAGTTACAGAGGAAGTAC 57.847 37.037 0.00 0.00 0.00 2.73
605 618 7.822822 GCCTTATGAAAAGTTACAGAGGAAGTA 59.177 37.037 13.94 0.00 0.00 2.24
606 619 6.655425 GCCTTATGAAAAGTTACAGAGGAAGT 59.345 38.462 13.94 0.00 0.00 3.01
607 620 6.881602 AGCCTTATGAAAAGTTACAGAGGAAG 59.118 38.462 13.94 0.00 0.00 3.46
609 622 6.374417 AGCCTTATGAAAAGTTACAGAGGA 57.626 37.500 13.94 0.00 0.00 3.71
610 623 7.454260 AAAGCCTTATGAAAAGTTACAGAGG 57.546 36.000 0.00 0.00 0.00 3.69
692 740 1.987855 TGAAGGCCTACAGGGACCG 60.988 63.158 5.16 0.00 46.87 4.79
693 741 1.198759 TGTGAAGGCCTACAGGGACC 61.199 60.000 5.16 0.00 46.87 4.46
740 791 3.598019 AACTATCCTGGTTTCGCGTTA 57.402 42.857 5.77 0.00 0.00 3.18
743 794 3.488489 CAAAAACTATCCTGGTTTCGCG 58.512 45.455 0.00 0.00 36.09 5.87
751 802 2.524306 TGCCACCCAAAAACTATCCTG 58.476 47.619 0.00 0.00 0.00 3.86
764 819 1.134371 GGACTTGAGAGTATGCCACCC 60.134 57.143 0.00 0.00 35.88 4.61
795 854 1.070758 CCCGTTCCAGATCCACCATAG 59.929 57.143 0.00 0.00 0.00 2.23
844 903 3.180387 GTGATGCGAAAAGTGCAGAAAAC 59.820 43.478 0.00 0.00 46.98 2.43
907 970 0.578683 CACAGCGGCAGATATGTTCG 59.421 55.000 1.45 1.86 0.00 3.95
920 983 0.372679 CAGACTAATGCAGCACAGCG 59.627 55.000 0.00 0.00 37.31 5.18
1728 1813 6.163135 AGGGATAAAGGTAAGAGTCATTCG 57.837 41.667 0.00 0.00 0.00 3.34
1736 1821 5.013704 TGCAACAGAAGGGATAAAGGTAAGA 59.986 40.000 0.00 0.00 0.00 2.10
1865 1951 0.610785 GGGAAAAGGATTGGCCGTCA 60.611 55.000 9.83 0.00 43.43 4.35
1901 1987 5.299279 ACATTTTGAAACTGAGGTAGTGGTG 59.701 40.000 2.14 0.00 40.26 4.17
1904 1990 8.378172 TCTTACATTTTGAAACTGAGGTAGTG 57.622 34.615 2.14 0.00 40.26 2.74
1966 2074 4.630644 ATTCCTACCTAGCATCACATGG 57.369 45.455 0.00 0.00 0.00 3.66
2067 2175 7.675478 GTTTGTTCAGTCATTCAAACTTTTCC 58.325 34.615 10.88 0.00 43.21 3.13
2125 2233 3.552699 CAGTTCATGTTGTTTTGGTGCAG 59.447 43.478 0.00 0.00 0.00 4.41
2152 2260 1.599071 CAGCCATAGTTACATGCCACG 59.401 52.381 0.00 0.00 0.00 4.94
2191 2299 9.920946 ATACCATCAAAAGAAACACCATATACT 57.079 29.630 0.00 0.00 0.00 2.12
2566 2680 7.014230 GCATGGTATGATAATTTTGGGTAGTGT 59.986 37.037 0.00 0.00 0.00 3.55
2668 5980 7.561237 TTTGTCTTGCGAAATACTTTTATGC 57.439 32.000 0.00 0.00 0.00 3.14
2743 6055 6.039382 ACATGTGGTCAAGGTTCTAAAACTTC 59.961 38.462 0.00 0.00 35.61 3.01
2752 6064 5.767816 AAGTAAACATGTGGTCAAGGTTC 57.232 39.130 0.00 0.00 0.00 3.62
2785 6097 9.938280 GTTGGACATATGGTAAATAGTAGCATA 57.062 33.333 7.80 7.49 40.66 3.14
2831 6144 4.142049 ACATCAGTTTTCTTCCCGCAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
2832 6145 3.383185 ACATCAGTTTTCTTCCCGCAAAA 59.617 39.130 0.00 0.00 0.00 2.44
2834 6147 2.582052 ACATCAGTTTTCTTCCCGCAA 58.418 42.857 0.00 0.00 0.00 4.85
2835 6148 2.270352 ACATCAGTTTTCTTCCCGCA 57.730 45.000 0.00 0.00 0.00 5.69
2836 6149 2.293399 ACAACATCAGTTTTCTTCCCGC 59.707 45.455 0.00 0.00 35.28 6.13
2837 6150 4.755123 ACTACAACATCAGTTTTCTTCCCG 59.245 41.667 0.00 0.00 35.28 5.14
2843 6177 9.944663 TTCATGTTTACTACAACATCAGTTTTC 57.055 29.630 0.00 0.00 44.08 2.29
2858 6192 6.245408 TGTTGGAGGCTATTTCATGTTTACT 58.755 36.000 0.00 0.00 0.00 2.24
2860 6194 6.480763 TCTGTTGGAGGCTATTTCATGTTTA 58.519 36.000 0.00 0.00 0.00 2.01
2867 6201 5.529060 CCACTATTCTGTTGGAGGCTATTTC 59.471 44.000 0.00 0.00 0.00 2.17
2997 6331 7.907214 AAGCGTACAGTGAAAATTCTCTATT 57.093 32.000 0.00 0.00 30.57 1.73
3001 6335 7.058016 CGTAAAAAGCGTACAGTGAAAATTCTC 59.942 37.037 0.00 0.00 0.00 2.87
3002 6336 6.849305 CGTAAAAAGCGTACAGTGAAAATTCT 59.151 34.615 0.00 0.00 0.00 2.40
3003 6337 6.847289 TCGTAAAAAGCGTACAGTGAAAATTC 59.153 34.615 0.00 0.00 0.00 2.17
3004 6338 6.630045 GTCGTAAAAAGCGTACAGTGAAAATT 59.370 34.615 0.00 0.00 0.00 1.82
3006 6340 5.491973 GTCGTAAAAAGCGTACAGTGAAAA 58.508 37.500 0.00 0.00 0.00 2.29
3010 6344 2.468777 ACGTCGTAAAAAGCGTACAGTG 59.531 45.455 0.00 0.00 35.71 3.66
3026 6360 5.347635 TCTGTTTTCCAAATAGATGACGTCG 59.652 40.000 11.62 0.00 0.00 5.12
3041 6375 6.116126 ACTAGCAATACTCCATCTGTTTTCC 58.884 40.000 0.00 0.00 0.00 3.13
3131 6465 9.056005 GCATGTATATTCTGAAAACCTGACATA 57.944 33.333 0.00 0.00 0.00 2.29
3218 6552 2.634453 TGATGCTTCAGAACTCTCACCA 59.366 45.455 0.00 0.00 0.00 4.17
3391 6725 2.668550 GCACCCCGTCTCCAACAC 60.669 66.667 0.00 0.00 0.00 3.32
3612 6947 7.103641 GGTGAAGATCATTGTACCACTTAAGA 58.896 38.462 10.09 0.00 0.00 2.10
3876 7214 2.104111 ACGCCAAGGCTGCATTATAGTA 59.896 45.455 9.73 0.00 39.32 1.82
4072 7410 5.520748 AAACAGACACCCTTATTCTGGAT 57.479 39.130 3.09 0.00 41.00 3.41
4135 7473 4.244066 GTGATGTGCCAAACAAATATGCA 58.756 39.130 0.00 0.00 43.61 3.96
4167 7505 6.594788 AGAAGTGAAATATGCACAACCAAT 57.405 33.333 10.53 0.00 38.70 3.16
4188 7526 5.105473 CGGAGTTACTAGTTCCATTGGAAGA 60.105 44.000 18.49 8.83 42.88 2.87
4208 7546 2.328099 GGGTGCAAGCTGAACGGAG 61.328 63.158 0.00 0.00 0.00 4.63
4222 7560 9.512588 AAAAATAGCTAGATCATTCATAGGGTG 57.487 33.333 0.00 0.00 0.00 4.61
4260 7600 9.294030 GAATATGAAAGGCAAATCTGTAAACAG 57.706 33.333 3.64 3.64 45.08 3.16
4286 7626 8.489559 CAACAAACATTCATACACTGGAATTTG 58.510 33.333 0.00 0.00 32.94 2.32
4288 7628 7.153985 CCAACAAACATTCATACACTGGAATT 58.846 34.615 0.00 0.00 31.63 2.17
4292 7632 4.236935 GCCAACAAACATTCATACACTGG 58.763 43.478 0.00 0.00 0.00 4.00
4302 7642 8.823220 AATCTACTATTAGGCCAACAAACATT 57.177 30.769 5.01 0.00 0.00 2.71
4303 7643 9.338622 GTAATCTACTATTAGGCCAACAAACAT 57.661 33.333 5.01 0.00 0.00 2.71
4993 8337 1.808411 AACATGACCGCCTTGTACTG 58.192 50.000 0.00 0.00 33.40 2.74
5106 8451 3.397527 AGGAGAATGAATAGGCCTTCCA 58.602 45.455 12.58 7.29 33.74 3.53
5308 8653 3.939592 GGCTCGACCTAAACAAGCTAATT 59.060 43.478 0.00 0.00 34.51 1.40
5325 8670 4.096231 TCATGAAACCAAACATATGGCTCG 59.904 41.667 7.80 0.00 44.75 5.03
5339 8684 4.943705 TCTAGCAAAGACCATCATGAAACC 59.056 41.667 0.00 0.00 0.00 3.27
5366 8711 2.017782 TGGCTGCAACAGTACGAAAAA 58.982 42.857 0.50 0.00 33.43 1.94
5367 8712 1.601903 CTGGCTGCAACAGTACGAAAA 59.398 47.619 0.50 0.00 33.43 2.29
5368 8713 1.202592 TCTGGCTGCAACAGTACGAAA 60.203 47.619 15.35 0.00 37.25 3.46
5405 8755 7.341512 TGATGTGGGACATAAGATTTGCAATTA 59.658 33.333 0.00 0.00 44.52 1.40
5422 8772 5.762179 AATACTTTGAGACTGATGTGGGA 57.238 39.130 0.00 0.00 0.00 4.37
5423 8773 5.707298 ACAAATACTTTGAGACTGATGTGGG 59.293 40.000 6.61 0.00 43.26 4.61
5453 8803 0.537188 TCGTCAGAGAAAGATGGGCC 59.463 55.000 0.00 0.00 0.00 5.80
5471 8821 6.913873 AAAATGTCAATGCAATAATGGCTC 57.086 33.333 0.00 0.00 0.00 4.70
5473 8823 8.422973 TCTAAAAATGTCAATGCAATAATGGC 57.577 30.769 0.00 0.00 0.00 4.40
5481 8831 9.251792 GATGCAATATCTAAAAATGTCAATGCA 57.748 29.630 0.00 0.00 42.28 3.96
5497 8847 7.393216 AGATGGAAGGTAAGAGATGCAATATC 58.607 38.462 0.00 0.00 33.97 1.63
5498 8848 7.327064 AGATGGAAGGTAAGAGATGCAATAT 57.673 36.000 0.00 0.00 0.00 1.28
5499 8849 6.753913 AGATGGAAGGTAAGAGATGCAATA 57.246 37.500 0.00 0.00 0.00 1.90
5500 8850 5.643421 AGATGGAAGGTAAGAGATGCAAT 57.357 39.130 0.00 0.00 0.00 3.56
5501 8851 5.045651 TCAAGATGGAAGGTAAGAGATGCAA 60.046 40.000 0.00 0.00 0.00 4.08
5503 8853 4.813697 GTCAAGATGGAAGGTAAGAGATGC 59.186 45.833 0.00 0.00 0.00 3.91
5504 8854 5.130145 AGGTCAAGATGGAAGGTAAGAGATG 59.870 44.000 0.00 0.00 0.00 2.90
5505 8855 5.130145 CAGGTCAAGATGGAAGGTAAGAGAT 59.870 44.000 0.00 0.00 0.00 2.75
5577 8933 5.847111 AAGCAATGCTGATGTGATGTAAT 57.153 34.783 9.14 0.00 39.62 1.89
5616 8972 9.629878 AGATCAGAGAAAATGCAATCTTTATCT 57.370 29.630 9.41 9.41 34.32 1.98
6049 9405 3.148412 ACCAATTTGGGCAAATGAAAGC 58.852 40.909 19.39 0.00 43.37 3.51
6081 9452 0.106708 TGTGACTCAAGGTGCCAGAC 59.893 55.000 0.00 0.00 0.00 3.51
6249 9639 8.166422 TGTCTAGATCATCGCTATTACTTTCA 57.834 34.615 0.00 0.00 0.00 2.69
6260 9650 9.579768 AAGATAATACAATGTCTAGATCATCGC 57.420 33.333 0.00 0.00 0.00 4.58
6295 9686 3.627577 GCTGAAAGACCACAAAAGAGTGA 59.372 43.478 0.00 0.00 37.76 3.41
6577 9969 1.010125 CCGCCACGTTGTGAACTTG 60.010 57.895 1.08 0.00 35.23 3.16
6737 10131 6.102897 TGATTTACCATTAGCTAGCCTCTC 57.897 41.667 12.13 0.00 0.00 3.20
7005 10399 1.201429 ACTCCGGGTCTGCTTGGAAT 61.201 55.000 0.00 0.00 0.00 3.01
7042 10436 1.388547 GTGTTGGCCACTGAAACAGA 58.611 50.000 3.88 0.00 41.11 3.41
7059 10453 3.928992 ACTTGCGATGTCATAGACAAGTG 59.071 43.478 22.32 9.39 45.96 3.16
7088 10486 2.223340 GGTGCAATGCTAGAACCAATCG 60.223 50.000 6.82 0.00 0.00 3.34
7100 10498 3.698029 AGATAACATTCGGTGCAATGC 57.302 42.857 0.00 0.00 37.28 3.56
7282 10681 7.676683 AACTTCTCCATATAGGTCAGCTTTA 57.323 36.000 0.00 0.00 39.02 1.85
7338 10737 3.888323 TCAATAAAGCACAACTTCTGGCA 59.112 39.130 0.00 0.00 37.75 4.92
7474 10873 7.559897 AGAACTTCCTACCATTCTTTTTGACAA 59.440 33.333 0.00 0.00 0.00 3.18
7487 10886 1.270625 CGGTTGCAGAACTTCCTACCA 60.271 52.381 0.00 0.00 32.15 3.25
7543 10942 2.561478 ACATGCAAAGGTACCTTCGT 57.439 45.000 27.24 14.25 34.84 3.85
7642 11049 2.100605 AGCGCCCTACAGAAAGAAAG 57.899 50.000 2.29 0.00 0.00 2.62
7643 11050 2.151202 CAAGCGCCCTACAGAAAGAAA 58.849 47.619 2.29 0.00 0.00 2.52
7644 11051 1.808411 CAAGCGCCCTACAGAAAGAA 58.192 50.000 2.29 0.00 0.00 2.52
7645 11052 0.673644 GCAAGCGCCCTACAGAAAGA 60.674 55.000 2.29 0.00 0.00 2.52
7646 11053 1.796796 GCAAGCGCCCTACAGAAAG 59.203 57.895 2.29 0.00 0.00 2.62
8001 11444 8.579006 TGATATCCAGAAATGACAATTATTGCC 58.421 33.333 4.68 0.00 0.00 4.52
8006 11449 7.177216 GGCCATGATATCCAGAAATGACAATTA 59.823 37.037 0.00 0.00 0.00 1.40
8090 11533 0.035739 TAAACCCCACTGTCGGCTTC 59.964 55.000 0.00 0.00 0.00 3.86
8130 11573 4.128925 TCTGCAGAATAGTGGCTAGTTG 57.871 45.455 15.67 0.00 0.00 3.16
8154 11597 6.063640 ACAACGGTAGAAATTGGTGTAAAC 57.936 37.500 0.00 0.00 0.00 2.01
8381 11826 5.226396 TGTTGGCAAGTTGGAAAATATTCG 58.774 37.500 0.00 0.00 36.36 3.34
8422 11867 4.877251 GCATGCATGGGTTGAAACATTATT 59.123 37.500 27.34 0.00 0.00 1.40
8427 11872 1.046204 TGCATGCATGGGTTGAAACA 58.954 45.000 27.34 11.60 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.