AutoCloner

Multiple sequence alignment - TraesCS1D01G019400

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G019400	chr1D	100.000	5779	0	0	1	5779	8387080	8392858	0.000000e+00	10672.0
1	TraesCS1D01G019400	chr1D	89.080	1163	92	15	855	2001	8355031	8356174	0.000000e+00	1411.0
2	TraesCS1D01G019400	chr1D	85.987	1049	125	9	913	1942	250922411	250923456	0.000000e+00	1103.0
3	TraesCS1D01G019400	chr1D	86.285	977	114	10	983	1946	29692751	29691782	0.000000e+00	1044.0
4	TraesCS1D01G019400	chr1D	85.196	993	121	8	970	1946	30025618	30026600	0.000000e+00	996.0
5	TraesCS1D01G019400	chr1D	83.793	290	38	4	3774	4055	130284162	130283874	3.430000e-67	267.0
6	TraesCS1D01G019400	chr1D	82.677	254	38	5	604	854	8387930	8387680	2.710000e-53	220.0
7	TraesCS1D01G019400	chr1D	92.258	155	11	1	600	753	270617392	270617546	9.750000e-53	219.0
8	TraesCS1D01G019400	chr1D	92.568	148	10	1	5633	5779	8790948	8790801	1.630000e-50	211.0
9	TraesCS1D01G019400	chr1D	89.610	154	15	1	601	753	378293363	378293516	1.640000e-45	195.0
10	TraesCS1D01G019400	chr1D	89.032	155	17	0	599	753	375217868	375217714	5.910000e-45	193.0
11	TraesCS1D01G019400	chr1D	82.317	164	26	3	2381	2542	411125614	411125776	7.810000e-29	139.0
12	TraesCS1D01G019400	chr1D	89.320	103	9	2	753	854	270617494	270617393	1.690000e-25	128.0
13	TraesCS1D01G019400	chr1D	87.273	110	12	2	644	753	299249971	299249864	2.190000e-24	124.0
14	TraesCS1D01G019400	chr1D	85.714	105	15	0	2557	2661	418404918	418405022	1.700000e-20	111.0
15	TraesCS1D01G019400	chr1D	85.321	109	12	4	644	749	115162362	115162255	6.120000e-20	110.0
16	TraesCS1D01G019400	chr1D	79.141	163	28	6	2369	2529	454494441	454494283	2.200000e-19	108.0
17	TraesCS1D01G019400	chr1D	84.946	93	14	0	2163	2255	8356193	8356285	1.710000e-15	95.3
18	TraesCS1D01G019400	chr1D	76.243	181	35	8	2357	2533	342880299	342880475	7.980000e-14	89.8
19	TraesCS1D01G019400	chr1D	89.041	73	6	2	2592	2663	441094173	441094244	7.980000e-14	89.8
20	TraesCS1D01G019400	chr1D	81.481	108	18	2	2557	2663	458151871	458151977	2.870000e-13	87.9
21	TraesCS1D01G019400	chr1D	84.706	85	11	2	2558	2641	327999188	327999271	3.710000e-12	84.2
22	TraesCS1D01G019400	chr1D	87.143	70	7	2	2592	2660	332268754	332268686	1.730000e-10	78.7
23	TraesCS1D01G019400	chr1D	86.301	73	9	1	2591	2663	476447488	476447417	1.730000e-10	78.7
24	TraesCS1D01G019400	chr1D	97.727	44	1	0	304	347	8387344	8387387	6.210000e-10	76.8
25	TraesCS1D01G019400	chr1D	97.727	44	1	0	265	308	8387383	8387426	6.210000e-10	76.8
26	TraesCS1D01G019400	chr1D	90.000	50	5	0	2389	2438	485504956	485504907	1.340000e-06	65.8
27	TraesCS1D01G019400	chr1D	85.185	54	8	0	2357	2410	60288041	60288094	8.090000e-04	56.5
28	TraesCS1D01G019400	chr1D	92.105	38	3	0	2371	2408	478154584	478154621	3.000000e-03	54.7
29	TraesCS1D01G019400	chr1B	91.077	2006	131	28	1	1982	11405898	11407879	0.000000e+00	2669.0
30	TraesCS1D01G019400	chr1B	89.798	990	78	9	4041	5024	11408353	11409325	0.000000e+00	1247.0
31	TraesCS1D01G019400	chr1B	86.882	991	118	3	964	1942	363480665	363479675	0.000000e+00	1099.0
32	TraesCS1D01G019400	chr1B	92.157	153	12	0	601	753	532482926	532482774	3.510000e-52	217.0
33	TraesCS1D01G019400	chr1B	90.196	102	9	1	750	851	532482823	532482923	1.310000e-26	132.0
34	TraesCS1D01G019400	chr1A	91.334	1154	73	11	855	1995	9968410	9969549	0.000000e+00	1552.0
35	TraesCS1D01G019400	chr1A	89.457	939	84	5	4051	4986	9971875	9972801	0.000000e+00	1171.0
36	TraesCS1D01G019400	chr1A	86.276	991	124	3	964	1942	321110491	321111481	0.000000e+00	1066.0
37	TraesCS1D01G019400	chr1A	87.706	545	58	7	5104	5640	540214329	540214872	1.370000e-175	627.0
38	TraesCS1D01G019400	chr1A	88.530	279	21	4	3501	3778	9971613	9971881	1.550000e-85	327.0
39	TraesCS1D01G019400	chr1A	91.558	154	12	1	601	753	21762547	21762700	1.630000e-50	211.0
40	TraesCS1D01G019400	chr1A	88.043	184	12	6	126	306	9963775	9963951	5.870000e-50	209.0
41	TraesCS1D01G019400	chr1A	89.320	103	9	2	753	854	21762648	21762547	1.690000e-25	128.0
42	TraesCS1D01G019400	chr1A	88.095	84	8	2	2581	2663	554783280	554783198	1.330000e-16	99.0
43	TraesCS1D01G019400	chr1A	88.710	62	5	1	2180	2241	562032933	562032992	2.230000e-09	75.0
44	TraesCS1D01G019400	chr2D	87.324	994	102	9	961	1939	589318590	589317606	0.000000e+00	1116.0
45	TraesCS1D01G019400	chr2D	88.006	617	63	9	5038	5645	565956458	565957072	0.000000e+00	719.0
46	TraesCS1D01G019400	chr2D	88.566	551	53	6	5104	5646	498283406	498283954	0.000000e+00	660.0
47	TraesCS1D01G019400	chr2D	82.520	635	111	0	4114	4748	589316766	589316132	5.060000e-155	558.0
48	TraesCS1D01G019400	chr2D	87.854	247	28	2	3804	4049	273235873	273235628	7.330000e-74	289.0
49	TraesCS1D01G019400	chr2D	93.919	148	8	1	5633	5779	512190855	512191002	7.540000e-54	222.0
50	TraesCS1D01G019400	chr2D	93.333	150	9	1	600	749	367804829	367804977	2.710000e-53	220.0
51	TraesCS1D01G019400	chr2D	88.182	110	12	1	753	862	367804930	367804822	4.700000e-26	130.0
52	TraesCS1D01G019400	chr2D	79.290	169	26	7	2369	2533	223550826	223550663	6.120000e-20	110.0
53	TraesCS1D01G019400	chr2D	77.714	175	31	8	2360	2532	36445938	36445770	3.680000e-17	100.0
54	TraesCS1D01G019400	chr2D	76.768	198	33	11	2342	2533	522752200	522752390	1.330000e-16	99.0
55	TraesCS1D01G019400	chr2D	83.178	107	15	1	2557	2663	491425420	491425317	1.710000e-15	95.3
56	TraesCS1D01G019400	chr2B	86.552	989	109	10	966	1939	712960224	712959245	0.000000e+00	1068.0
57	TraesCS1D01G019400	chr2B	86.482	614	71	8	5038	5641	692725687	692726298	0.000000e+00	664.0
58	TraesCS1D01G019400	chr2B	76.690	725	99	37	5033	5733	163743173	163743851	7.170000e-89	339.0
59	TraesCS1D01G019400	chr2B	84.099	283	37	6	3774	4049	796456728	796457009	3.430000e-67	267.0
60	TraesCS1D01G019400	chr2B	82.857	105	18	0	2557	2661	109316806	109316702	1.710000e-15	95.3
61	TraesCS1D01G019400	chr3D	85.758	990	113	14	974	1942	41784440	41783458	0.000000e+00	1022.0
62	TraesCS1D01G019400	chr3D	87.114	551	61	5	5104	5646	29784015	29783467	2.960000e-172	616.0
63	TraesCS1D01G019400	chr3D	86.957	552	61	6	5104	5646	2053612	2053063	1.380000e-170	610.0
64	TraesCS1D01G019400	chr3D	82.500	680	119	0	4114	4793	41783072	41782393	1.070000e-166	597.0
65	TraesCS1D01G019400	chr3D	91.667	156	10	1	601	753	558665850	558666005	4.540000e-51	213.0
66	TraesCS1D01G019400	chr3D	90.654	107	6	2	753	856	558665953	558665848	7.810000e-29	139.0
67	TraesCS1D01G019400	chr3D	86.239	109	12	2	753	859	91417856	91417749	1.320000e-21	115.0
68	TraesCS1D01G019400	chr3D	81.308	107	20	0	2557	2663	562514510	562514404	2.870000e-13	87.9
69	TraesCS1D01G019400	chr3D	83.951	81	12	1	2360	2439	588491830	588491750	6.210000e-10	76.8
70	TraesCS1D01G019400	chr3A	85.069	1018	119	18	940	1934	53738576	53739583	0.000000e+00	1007.0
71	TraesCS1D01G019400	chr3A	93.590	156	9	1	598	753	359580468	359580622	1.250000e-56	231.0
72	TraesCS1D01G019400	chr3A	91.089	101	8	1	753	853	359580570	359580471	1.010000e-27	135.0
73	TraesCS1D01G019400	chr3A	78.090	178	31	8	2360	2533	161466727	161466554	7.920000e-19	106.0
74	TraesCS1D01G019400	chr7D	87.681	552	57	6	5104	5646	136420351	136420900	2.940000e-177	632.0
75	TraesCS1D01G019400	chr7D	86.719	256	26	7	3799	4049	209496593	209496845	1.590000e-70	278.0
76	TraesCS1D01G019400	chr7D	94.040	151	8	1	604	753	601165559	601165409	1.620000e-55	228.0
77	TraesCS1D01G019400	chr7D	93.243	148	9	1	5633	5779	104606077	104606224	3.510000e-52	217.0
78	TraesCS1D01G019400	chr7D	89.623	106	9	2	750	854	601165458	601165562	3.630000e-27	134.0
79	TraesCS1D01G019400	chr7D	78.689	183	34	5	2354	2533	513211552	513211732	3.660000e-22	117.0
80	TraesCS1D01G019400	chr7D	78.409	176	29	5	2361	2533	111479502	111479333	7.920000e-19	106.0
81	TraesCS1D01G019400	chr7D	100.000	28	0	0	2084	2111	180677546	180677573	1.000000e-02	52.8
82	TraesCS1D01G019400	chr6D	87.138	552	60	6	5104	5646	435883393	435883942	2.960000e-172	616.0
83	TraesCS1D01G019400	chr6D	88.353	249	25	3	3804	4049	328823472	328823719	4.380000e-76	296.0
84	TraesCS1D01G019400	chr6D	84.321	287	30	11	3774	4049	6744308	6744026	3.430000e-67	267.0
85	TraesCS1D01G019400	chr6D	87.898	157	15	3	599	753	98102169	98102323	1.280000e-41	182.0
86	TraesCS1D01G019400	chr6D	86.928	153	17	2	604	753	98104297	98104145	9.960000e-38	169.0
87	TraesCS1D01G019400	chr6D	83.099	142	23	1	2360	2501	403051635	403051495	1.690000e-25	128.0
88	TraesCS1D01G019400	chr6D	87.850	107	11	2	750	854	98104194	98104300	2.190000e-24	124.0
89	TraesCS1D01G019400	chr6D	87.500	104	8	3	753	854	98102271	98102171	1.320000e-21	115.0
90	TraesCS1D01G019400	chr6D	86.667	105	9	4	753	854	452670436	452670538	1.700000e-20	111.0
91	TraesCS1D01G019400	chr6D	83.178	107	18	0	2557	2663	121158490	121158596	1.330000e-16	99.0
92	TraesCS1D01G019400	chr6D	75.439	171	38	4	2357	2525	416962258	416962426	4.800000e-11	80.5
93	TraesCS1D01G019400	chr6D	82.418	91	14	2	2557	2646	454064243	454064332	1.730000e-10	78.7
94	TraesCS1D01G019400	chr6D	77.397	146	24	7	2360	2500	465049335	465049194	1.730000e-10	78.7
95	TraesCS1D01G019400	chr5D	87.363	546	58	6	5105	5641	313816855	313816312	2.960000e-172	616.0
96	TraesCS1D01G019400	chr5D	86.957	552	60	8	5104	5646	551937580	551938128	1.380000e-170	610.0
97	TraesCS1D01G019400	chr5D	85.976	328	38	8	5025	5347	507265390	507265066	1.540000e-90	344.0
98	TraesCS1D01G019400	chr5D	87.654	243	24	5	3810	4049	452504233	452503994	1.590000e-70	278.0
99	TraesCS1D01G019400	chr5D	94.156	154	8	1	601	753	491789371	491789524	3.480000e-57	233.0
100	TraesCS1D01G019400	chr5D	93.919	148	8	1	5633	5779	507264799	507264652	7.540000e-54	222.0
101	TraesCS1D01G019400	chr5D	93.243	148	9	1	5633	5779	441863663	441863516	3.510000e-52	217.0
102	TraesCS1D01G019400	chr5D	90.654	107	8	2	753	858	491789472	491789367	2.170000e-29	141.0
103	TraesCS1D01G019400	chr5D	88.679	106	10	2	750	855	330957277	330957380	1.690000e-25	128.0
104	TraesCS1D01G019400	chr2A	82.822	652	110	2	4113	4763	723650473	723649823	3.000000e-162	582.0
105	TraesCS1D01G019400	chr7B	82.727	660	70	18	5025	5644	702563184	702562529	1.090000e-151	547.0
106	TraesCS1D01G019400	chr7B	93.197	147	10	0	5633	5779	702562496	702562350	3.510000e-52	217.0
107	TraesCS1D01G019400	chr7B	78.977	176	31	6	2360	2533	70071581	70071410	1.320000e-21	115.0
108	TraesCS1D01G019400	chr7B	78.125	192	30	11	2347	2533	727388456	727388640	1.700000e-20	111.0
109	TraesCS1D01G019400	chr7B	84.259	108	15	2	2557	2663	725856491	725856597	2.850000e-18	104.0
110	TraesCS1D01G019400	chr4A	80.392	612	82	20	5045	5646	320491665	320492248	1.150000e-116	431.0
111	TraesCS1D01G019400	chr4A	90.957	188	16	1	5593	5779	700937941	700938128	9.610000e-63	252.0
112	TraesCS1D01G019400	chr4A	91.558	154	13	0	600	753	669762301	669762454	4.540000e-51	213.0
113	TraesCS1D01G019400	chr4A	80.714	140	20	7	2364	2500	693877386	693877521	1.020000e-17	102.0
114	TraesCS1D01G019400	chr4A	78.205	156	30	4	2360	2515	669826936	669826785	4.770000e-16	97.1
115	TraesCS1D01G019400	chr4A	82.243	107	19	0	2557	2663	534542174	534542280	6.170000e-15	93.5
116	TraesCS1D01G019400	chr4A	82.407	108	17	2	2557	2663	685783681	685783787	6.170000e-15	93.5
117	TraesCS1D01G019400	chr4A	77.273	154	25	9	2381	2533	182222449	182222305	1.330000e-11	82.4
118	TraesCS1D01G019400	chr5A	85.211	284	33	4	3774	4049	342235585	342235303	3.410000e-72	283.0
119	TraesCS1D01G019400	chr4D	84.266	286	32	10	3774	4049	509391753	509391471	3.430000e-67	267.0
120	TraesCS1D01G019400	chr4D	89.744	156	13	1	601	753	502421740	502421895	4.570000e-46	196.0
121	TraesCS1D01G019400	chr4D	91.429	140	9	1	604	740	461391317	461391456	7.640000e-44	189.0
122	TraesCS1D01G019400	chr4D	88.961	154	14	2	601	753	63908117	63908268	2.750000e-43	187.0
123	TraesCS1D01G019400	chr4D	87.975	158	18	1	597	753	341704268	341704111	9.890000e-43	185.0
124	TraesCS1D01G019400	chr4D	86.000	150	21	0	604	753	466741134	466740985	1.670000e-35	161.0
125	TraesCS1D01G019400	chr4D	85.235	149	21	1	601	749	26151028	26151175	1.000000e-32	152.0
126	TraesCS1D01G019400	chr4D	89.524	105	11	0	753	857	63908218	63908114	3.630000e-27	134.0
127	TraesCS1D01G019400	chr4D	88.679	106	10	2	750	854	341704160	341704264	1.690000e-25	128.0
128	TraesCS1D01G019400	chr4D	87.379	103	11	2	755	857	26151125	26151025	3.660000e-22	117.0
129	TraesCS1D01G019400	chr4D	86.538	104	10	2	753	853	461391417	461391315	1.700000e-20	111.0
130	TraesCS1D01G019400	chr4D	84.112	107	16	1	2557	2663	499253662	499253767	1.020000e-17	102.0
131	TraesCS1D01G019400	chr4D	83.178	107	18	0	2557	2663	504283390	504283496	1.330000e-16	99.0
132	TraesCS1D01G019400	chr4D	76.087	184	37	5	2353	2533	466669434	466669255	7.980000e-14	89.8
133	TraesCS1D01G019400	chr4D	88.235	51	5	1	804	854	341703915	341703866	6.250000e-05	60.2
134	TraesCS1D01G019400	chr4D	85.455	55	7	1	804	858	107739916	107739863	8.090000e-04	56.5
135	TraesCS1D01G019400	chr5B	93.878	147	9	0	5633	5779	488520705	488520559	7.540000e-54	222.0
136	TraesCS1D01G019400	chr5B	92.053	151	11	1	604	753	467027078	467026928	1.630000e-50	211.0
137	TraesCS1D01G019400	chr5B	90.566	159	13	2	596	753	359874202	359874045	5.870000e-50	209.0
138	TraesCS1D01G019400	chr5B	87.156	109	12	2	748	855	58001	58108	7.860000e-24	122.0
139	TraesCS1D01G019400	chr5B	83.019	106	18	0	2558	2663	446455199	446455094	4.770000e-16	97.1
140	TraesCS1D01G019400	chr5B	86.905	84	9	2	2581	2663	710235751	710235833	6.170000e-15	93.5
141	TraesCS1D01G019400	chr5B	95.000	40	2	0	2124	2163	402809140	402809101	4.830000e-06	63.9
142	TraesCS1D01G019400	chr6A	92.667	150	11	0	604	753	597669064	597668915	3.510000e-52	217.0
143	TraesCS1D01G019400	chr6A	89.320	103	10	1	750	852	597668964	597669065	1.690000e-25	128.0
144	TraesCS1D01G019400	chr6A	86.905	84	9	2	2581	2663	591940431	591940513	6.170000e-15	93.5
145	TraesCS1D01G019400	chr4B	93.243	148	8	2	5633	5779	478839181	478839327	3.510000e-52	217.0
146	TraesCS1D01G019400	chr4B	89.032	155	14	3	601	753	573070009	573070162	7.640000e-44	189.0
147	TraesCS1D01G019400	chr4B	88.571	105	10	2	753	856	573070110	573070007	6.080000e-25	126.0
148	TraesCS1D01G019400	chr4B	75.145	173	34	7	2364	2533	584848778	584848944	8.030000e-09	73.1
149	TraesCS1D01G019400	chr4B	75.145	173	34	7	2364	2533	584874066	584874232	8.030000e-09	73.1
150	TraesCS1D01G019400	chrUn	86.395	147	13	3	601	747	155018317	155018456	2.790000e-33	154.0
151	TraesCS1D01G019400	chrUn	86.000	150	14	3	604	753	399496825	399496683	2.790000e-33	154.0
152	TraesCS1D01G019400	chrUn	86.000	150	14	3	604	753	463429066	463428924	2.790000e-33	154.0
153	TraesCS1D01G019400	chrUn	85.714	84	10	2	2581	2663	136395213	136395131	2.870000e-13	87.9
154	TraesCS1D01G019400	chrUn	75.706	177	30	10	2360	2533	351402390	351402224	6.210000e-10	76.8
155	TraesCS1D01G019400	chrUn	93.023	43	3	0	811	853	37107804	37107846	4.830000e-06	63.9
156	TraesCS1D01G019400	chrUn	92.683	41	2	1	600	640	37107847	37107808	2.250000e-04	58.4
157	TraesCS1D01G019400	chr6B	77.841	176	35	3	2360	2533	610952829	610952656	7.920000e-19	106.0
158	TraesCS1D01G019400	chr6B	82.243	107	19	0	2557	2663	213228767	213228873	6.170000e-15	93.5
159	TraesCS1D01G019400	chr7A	86.517	89	10	2	2035	2121	34421378	34421290	4.770000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G019400	chr1D	8387080	8392858	5778	False	10672.000000	10672	100.000000	1	5779	1	chr1D.!!$F1	5778
1	TraesCS1D01G019400	chr1D	250922411	250923456	1045	False	1103.000000	1103	85.987000	913	1942	1	chr1D.!!$F4	1029
2	TraesCS1D01G019400	chr1D	29691782	29692751	969	True	1044.000000	1044	86.285000	983	1946	1	chr1D.!!$R3	963
3	TraesCS1D01G019400	chr1D	30025618	30026600	982	False	996.000000	996	85.196000	970	1946	1	chr1D.!!$F2	976
4	TraesCS1D01G019400	chr1D	8355031	8356285	1254	False	753.150000	1411	87.013000	855	2255	2	chr1D.!!$F14	1400
5	TraesCS1D01G019400	chr1B	11405898	11409325	3427	False	1958.000000	2669	90.437500	1	5024	2	chr1B.!!$F2	5023
6	TraesCS1D01G019400	chr1B	363479675	363480665	990	True	1099.000000	1099	86.882000	964	1942	1	chr1B.!!$R1	978
7	TraesCS1D01G019400	chr1A	321110491	321111481	990	False	1066.000000	1066	86.276000	964	1942	1	chr1A.!!$F3	978
8	TraesCS1D01G019400	chr1A	9968410	9972801	4391	False	1016.666667	1552	89.773667	855	4986	3	chr1A.!!$F6	4131
9	TraesCS1D01G019400	chr1A	540214329	540214872	543	False	627.000000	627	87.706000	5104	5640	1	chr1A.!!$F4	536
10	TraesCS1D01G019400	chr2D	589316132	589318590	2458	True	837.000000	1116	84.922000	961	4748	2	chr2D.!!$R6	3787
11	TraesCS1D01G019400	chr2D	565956458	565957072	614	False	719.000000	719	88.006000	5038	5645	1	chr2D.!!$F5	607
12	TraesCS1D01G019400	chr2D	498283406	498283954	548	False	660.000000	660	88.566000	5104	5646	1	chr2D.!!$F2	542
13	TraesCS1D01G019400	chr2B	712959245	712960224	979	True	1068.000000	1068	86.552000	966	1939	1	chr2B.!!$R2	973
14	TraesCS1D01G019400	chr2B	692725687	692726298	611	False	664.000000	664	86.482000	5038	5641	1	chr2B.!!$F2	603
15	TraesCS1D01G019400	chr2B	163743173	163743851	678	False	339.000000	339	76.690000	5033	5733	1	chr2B.!!$F1	700
16	TraesCS1D01G019400	chr3D	41782393	41784440	2047	True	809.500000	1022	84.129000	974	4793	2	chr3D.!!$R7	3819
17	TraesCS1D01G019400	chr3D	29783467	29784015	548	True	616.000000	616	87.114000	5104	5646	1	chr3D.!!$R2	542
18	TraesCS1D01G019400	chr3D	2053063	2053612	549	True	610.000000	610	86.957000	5104	5646	1	chr3D.!!$R1	542
19	TraesCS1D01G019400	chr3A	53738576	53739583	1007	False	1007.000000	1007	85.069000	940	1934	1	chr3A.!!$F1	994
20	TraesCS1D01G019400	chr7D	136420351	136420900	549	False	632.000000	632	87.681000	5104	5646	1	chr7D.!!$F2	542
21	TraesCS1D01G019400	chr6D	435883393	435883942	549	False	616.000000	616	87.138000	5104	5646	1	chr6D.!!$F4	542
22	TraesCS1D01G019400	chr5D	313816312	313816855	543	True	616.000000	616	87.363000	5105	5641	1	chr5D.!!$R1	536
23	TraesCS1D01G019400	chr5D	551937580	551938128	548	False	610.000000	610	86.957000	5104	5646	1	chr5D.!!$F3	542
24	TraesCS1D01G019400	chr5D	507264652	507265390	738	True	283.000000	344	89.947500	5025	5779	2	chr5D.!!$R5	754
25	TraesCS1D01G019400	chr2A	723649823	723650473	650	True	582.000000	582	82.822000	4113	4763	1	chr2A.!!$R1	650
26	TraesCS1D01G019400	chr7B	702562350	702563184	834	True	382.000000	547	87.962000	5025	5779	2	chr7B.!!$R2	754
27	TraesCS1D01G019400	chr4A	320491665	320492248	583	False	431.000000	431	80.392000	5045	5646	1	chr4A.!!$F1	601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
499	540	0.250770	ACCGGTGCCTCCTTTTTCTC	60.251	55.000	6.12	0.00	0.00	2.87	F
531	572	0.322277	CTGCTGGCCTGACTTCACAT	60.322	55.000	14.77	0.00	0.00	3.21	F
1952	2109	0.452987	ATGGTACGTACACGCACGAT	59.547	50.000	26.02	1.81	44.69	3.73	F
2687	3307	0.383949	AAACACCATGACAACACCGC	59.616	50.000	0.00	0.00	0.00	5.68	F
2688	3308	0.749818	AACACCATGACAACACCGCA	60.750	50.000	0.00	0.00	0.00	5.69	F
2742	3364	0.967380	AGTAGCTTGCCCATGGTTGC	60.967	55.000	11.73	8.61	0.00	4.17	F
3092	3763	1.064979	TCCGAGGAAAAGGGCCATAAC	60.065	52.381	6.18	0.00	0.00	1.89	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2158	2723	0.460459	GAAGCGGACAGACTAAGGGC	60.460	60.000	0.00	0.00	0.00	5.19	R
2159	2724	0.895530	TGAAGCGGACAGACTAAGGG	59.104	55.000	0.00	0.00	0.00	3.95	R
3074	3731	1.014352	CGTTATGGCCCTTTTCCTCG	58.986	55.000	0.00	0.00	0.00	4.63	R
4340	5746	0.315251	CACAGTCCTCAGCGTTCTCA	59.685	55.000	0.00	0.00	0.00	3.27	R
4496	5903	2.264794	CCCTTGAAGTCGACCCCG	59.735	66.667	13.01	0.00	37.07	5.73	R
4606	6013	3.936772	TTGAACCCATGGGCGAGCC	62.937	63.158	31.73	15.16	39.32	4.70	R
4962	6371	0.179032	TCCACGATGCCAACAACAGT	60.179	50.000	0.00	0.00	0.00	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	4.321378	GGCACATGCATGCATATTCATGTA	60.321	41.667	31.73	12.04	45.29	2.29
102	103	2.754472	GTTGCCCCATGTTCTGAAAAC	58.246	47.619	0.00	0.00	0.00	2.43
113	114	7.119553	CCCATGTTCTGAAAACCCATTTTATTG	59.880	37.037	0.00	0.00	38.17	1.90
158	159	5.476091	AGCCTAGTCAGATGCTTATTACC	57.524	43.478	0.00	0.00	0.00	2.85
168	169	6.046593	CAGATGCTTATTACCGTAAGAACCA	58.953	40.000	0.00	0.00	43.02	3.67
195	196	3.944015	AGAGATGCCTGCAGTAAATTGTC	59.056	43.478	13.81	4.76	0.00	3.18
210	211	5.867903	AAATTGTCAGGAAACAACATCCA	57.132	34.783	0.00	0.00	41.65	3.41
211	212	4.853924	ATTGTCAGGAAACAACATCCAC	57.146	40.909	0.00	0.00	41.65	4.02
265	266	9.914131	CGATCTGACATGGATACTCTAATTTAA	57.086	33.333	0.00	0.00	37.61	1.52
278	279	9.760077	ATACTCTAATTTAAATCACAGTACCCG	57.240	33.333	0.10	0.00	0.00	5.28
279	280	7.618137	ACTCTAATTTAAATCACAGTACCCGT	58.382	34.615	0.10	0.00	0.00	5.28
280	281	7.548075	ACTCTAATTTAAATCACAGTACCCGTG	59.452	37.037	0.10	6.68	35.63	4.94
281	282	4.957759	ATTTAAATCACAGTACCCGTGC	57.042	40.909	7.92	0.00	34.27	5.34
282	283	3.404224	TTAAATCACAGTACCCGTGCA	57.596	42.857	7.92	0.00	34.27	4.57
283	284	2.489938	AAATCACAGTACCCGTGCAT	57.510	45.000	7.92	1.75	34.27	3.96
284	285	3.620427	AAATCACAGTACCCGTGCATA	57.380	42.857	7.92	0.00	34.27	3.14
285	286	3.838244	AATCACAGTACCCGTGCATAT	57.162	42.857	7.92	0.00	34.27	1.78
286	287	4.948341	AATCACAGTACCCGTGCATATA	57.052	40.909	7.92	0.00	34.27	0.86
287	288	4.521130	ATCACAGTACCCGTGCATATAG	57.479	45.455	7.92	0.00	34.27	1.31
288	289	2.626266	TCACAGTACCCGTGCATATAGG	59.374	50.000	7.92	0.00	34.27	2.57
289	290	2.364324	CACAGTACCCGTGCATATAGGT	59.636	50.000	0.00	0.00	36.36	3.08
290	291	3.570975	CACAGTACCCGTGCATATAGGTA	59.429	47.826	0.00	0.00	33.70	3.08
325	326	7.519809	GCAAAAATCACAGTATCCGTGCATATA	60.520	37.037	0.00	0.00	34.27	0.86
382	408	1.246649	ATCGACATGGCTTGTGCAAA	58.753	45.000	11.09	0.00	39.18	3.68
388	414	0.899720	ATGGCTTGTGCAAAGGGATG	59.100	50.000	9.63	0.00	41.91	3.51
395	421	0.741927	GTGCAAAGGGATGCCATTGC	60.742	55.000	31.76	31.76	45.83	3.56
442	468	9.515226	AGCTAATTTTGACAAATTACCAGTAGA	57.485	29.630	0.50	0.00	41.84	2.59
443	469	9.774742	GCTAATTTTGACAAATTACCAGTAGAG	57.225	33.333	0.50	0.00	41.84	2.43
444	470	9.774742	CTAATTTTGACAAATTACCAGTAGAGC	57.225	33.333	0.50	0.00	41.84	4.09
445	471	7.759489	ATTTTGACAAATTACCAGTAGAGCA	57.241	32.000	0.50	0.00	0.00	4.26
447	473	5.222079	TGACAAATTACCAGTAGAGCACA	57.778	39.130	0.00	0.00	0.00	4.57
448	474	4.994852	TGACAAATTACCAGTAGAGCACAC	59.005	41.667	0.00	0.00	0.00	3.82
449	475	4.324267	ACAAATTACCAGTAGAGCACACC	58.676	43.478	0.00	0.00	0.00	4.16
451	477	3.611766	ATTACCAGTAGAGCACACCAC	57.388	47.619	0.00	0.00	0.00	4.16
468	509	6.598064	GCACACCACTAATTGTCTAAACCTAT	59.402	38.462	0.00	0.00	0.00	2.57
499	540	0.250770	ACCGGTGCCTCCTTTTTCTC	60.251	55.000	6.12	0.00	0.00	2.87
531	572	0.322277	CTGCTGGCCTGACTTCACAT	60.322	55.000	14.77	0.00	0.00	3.21
534	575	1.681166	GCTGGCCTGACTTCACATGAT	60.681	52.381	14.77	0.00	0.00	2.45
539	580	2.426024	GCCTGACTTCACATGATGCATT	59.574	45.455	0.00	0.00	0.00	3.56
574	615	7.331193	GGTACAAGAAGACTGATGTATCGTTTT	59.669	37.037	0.00	0.00	31.57	2.43
575	616	7.730364	ACAAGAAGACTGATGTATCGTTTTT	57.270	32.000	0.00	0.00	0.00	1.94
577	618	7.226720	ACAAGAAGACTGATGTATCGTTTTTGT	59.773	33.333	0.00	0.00	0.00	2.83
596	637	2.079925	GTTGGTCTGCCTCATCTCAAC	58.920	52.381	0.00	0.00	35.27	3.18
597	638	0.615331	TGGTCTGCCTCATCTCAACC	59.385	55.000	0.00	0.00	35.27	3.77
599	640	2.111384	GGTCTGCCTCATCTCAACCTA	58.889	52.381	0.00	0.00	0.00	3.08
602	643	2.023984	TCTGCCTCATCTCAACCTAGGA	60.024	50.000	17.98	0.00	0.00	2.94
610	651	7.610865	CCTCATCTCAACCTAGGAAGAATATC	58.389	42.308	17.98	0.00	0.00	1.63
636	677	9.019764	CATACGGAAACCAATATTCAATGAAAC	57.980	33.333	0.00	0.00	0.00	2.78
637	678	6.394809	ACGGAAACCAATATTCAATGAAACC	58.605	36.000	0.00	0.00	0.00	3.27
638	679	6.210584	ACGGAAACCAATATTCAATGAAACCT	59.789	34.615	0.00	0.00	0.00	3.50
698	741	8.148351	TCTGAATAAATACGGGATGTTAAGAGG	58.852	37.037	0.00	0.00	0.00	3.69
719	762	2.352225	GGTGATGTTTTATTGCCACGCA	60.352	45.455	0.00	0.00	36.47	5.24
735	778	6.648695	TGCCACGCAAAATTTCATGTTGAAA	61.649	36.000	5.25	5.25	42.18	2.69
736	779	8.573625	TGCCACGCAAAATTTCATGTTGAAAC	62.574	38.462	4.90	0.00	41.42	2.78
748	791	7.433708	TTCATGTTGAAACACATTACGAGAT	57.566	32.000	0.00	0.00	42.51	2.75
749	792	8.541133	TTCATGTTGAAACACATTACGAGATA	57.459	30.769	0.00	0.00	42.51	1.98
750	793	8.716646	TCATGTTGAAACACATTACGAGATAT	57.283	30.769	0.00	0.00	42.51	1.63
751	794	8.603181	TCATGTTGAAACACATTACGAGATATG	58.397	33.333	0.00	0.00	42.51	1.78
761	810	7.040340	ACACATTACGAGATATGACCCTCTTAG	60.040	40.741	0.00	0.00	0.00	2.18
766	815	4.704540	CGAGATATGACCCTCTTAGCATCT	59.295	45.833	0.00	0.00	0.00	2.90
768	817	4.704540	AGATATGACCCTCTTAGCATCTCG	59.295	45.833	0.00	0.00	0.00	4.04
773	822	4.038042	TGACCCTCTTAGCATCTCGTATTG	59.962	45.833	0.00	0.00	0.00	1.90
777	826	5.463724	CCCTCTTAGCATCTCGTATTGTTTC	59.536	44.000	0.00	0.00	0.00	2.78
778	827	6.042777	CCTCTTAGCATCTCGTATTGTTTCA	58.957	40.000	0.00	0.00	0.00	2.69
779	828	6.199908	CCTCTTAGCATCTCGTATTGTTTCAG	59.800	42.308	0.00	0.00	0.00	3.02
780	829	6.863275	TCTTAGCATCTCGTATTGTTTCAGA	58.137	36.000	0.00	0.00	0.00	3.27
781	830	7.492524	TCTTAGCATCTCGTATTGTTTCAGAT	58.507	34.615	0.00	0.00	0.00	2.90
867	916	0.979665	TCTCCCCTCAACTTCTGCTG	59.020	55.000	0.00	0.00	0.00	4.41
949	1011	4.626081	ACCTGCACCGCACAGTCC	62.626	66.667	0.00	0.00	33.79	3.85
1257	1383	2.652530	GTCCACACCTTCGCCGTA	59.347	61.111	0.00	0.00	0.00	4.02
1686	1827	1.143838	CATCGGCGACTTCATCCCA	59.856	57.895	13.76	0.00	0.00	4.37
1801	1945	3.690460	CACATAAAGAGGGGCAAGAACT	58.310	45.455	0.00	0.00	0.00	3.01
1832	1976	2.954868	CGCCGACATGGTAGACGC	60.955	66.667	0.00	0.00	41.21	5.19
1929	2086	1.541147	CGTGACAACATCAAGGCCATT	59.459	47.619	5.01	0.00	39.72	3.16
1952	2109	0.452987	ATGGTACGTACACGCACGAT	59.547	50.000	26.02	1.81	44.69	3.73
1982	2139	8.627403	ACATCCATTATTTGTTTCTAGCATCTG	58.373	33.333	0.00	0.00	0.00	2.90
2021	2586	6.897706	TTTATAAAACGTTTTAGGGCCAGT	57.102	33.333	30.62	18.48	36.22	4.00
2022	2587	6.897706	TTATAAAACGTTTTAGGGCCAGTT	57.102	33.333	30.62	17.89	36.22	3.16
2057	2622	9.952188	GCTTAATTTAGAAGCCTCGATAAATTT	57.048	29.630	14.15	0.00	42.90	1.82
2061	2626	6.693315	TTAGAAGCCTCGATAAATTTTGGG	57.307	37.500	0.00	0.00	0.00	4.12
2062	2627	4.855340	AGAAGCCTCGATAAATTTTGGGA	58.145	39.130	0.00	0.00	0.00	4.37
2063	2628	5.261216	AGAAGCCTCGATAAATTTTGGGAA	58.739	37.500	0.00	0.00	0.00	3.97
2064	2629	4.983671	AGCCTCGATAAATTTTGGGAAC	57.016	40.909	0.00	0.00	0.00	3.62
2065	2630	3.377172	AGCCTCGATAAATTTTGGGAACG	59.623	43.478	0.00	0.00	0.00	3.95
2066	2631	3.488553	GCCTCGATAAATTTTGGGAACGG	60.489	47.826	0.00	0.00	0.00	4.44
2067	2632	3.488553	CCTCGATAAATTTTGGGAACGGC	60.489	47.826	0.00	0.00	0.00	5.68
2068	2633	3.349022	TCGATAAATTTTGGGAACGGCT	58.651	40.909	0.00	0.00	0.00	5.52
2069	2634	3.759618	TCGATAAATTTTGGGAACGGCTT	59.240	39.130	0.00	0.00	0.00	4.35
2070	2635	4.942483	TCGATAAATTTTGGGAACGGCTTA	59.058	37.500	0.00	0.00	0.00	3.09
2071	2636	5.591067	TCGATAAATTTTGGGAACGGCTTAT	59.409	36.000	0.00	0.00	0.00	1.73
2072	2637	6.095720	TCGATAAATTTTGGGAACGGCTTATT	59.904	34.615	0.00	0.00	0.00	1.40
2073	2638	6.754675	CGATAAATTTTGGGAACGGCTTATTT	59.245	34.615	0.00	0.00	0.00	1.40
2074	2639	7.276878	CGATAAATTTTGGGAACGGCTTATTTT	59.723	33.333	0.00	0.00	0.00	1.82
2075	2640	8.856153	ATAAATTTTGGGAACGGCTTATTTTT	57.144	26.923	0.00	0.00	0.00	1.94
2096	2661	7.582667	TTTTTAAGCTAGAAAGAGGCAGTTT	57.417	32.000	0.00	0.00	0.00	2.66
2097	2662	8.685838	TTTTTAAGCTAGAAAGAGGCAGTTTA	57.314	30.769	0.00	0.00	0.00	2.01
2098	2663	8.863872	TTTTAAGCTAGAAAGAGGCAGTTTAT	57.136	30.769	0.00	0.00	0.00	1.40
2099	2664	8.863872	TTTAAGCTAGAAAGAGGCAGTTTATT	57.136	30.769	0.00	0.00	0.00	1.40
2100	2665	8.863872	TTAAGCTAGAAAGAGGCAGTTTATTT	57.136	30.769	0.00	0.00	0.00	1.40
2101	2666	7.767250	AAGCTAGAAAGAGGCAGTTTATTTT	57.233	32.000	0.00	0.00	0.00	1.82
2102	2667	7.767250	AGCTAGAAAGAGGCAGTTTATTTTT	57.233	32.000	0.00	0.00	0.00	1.94
2143	2708	7.334844	ACTCAGGCAGTTTATATTTTAAGCC	57.665	36.000	0.00	0.00	41.08	4.35
2144	2709	6.038271	ACTCAGGCAGTTTATATTTTAAGCCG	59.962	38.462	0.00	0.00	45.19	5.52
2145	2710	4.976116	CAGGCAGTTTATATTTTAAGCCGC	59.024	41.667	0.00	0.00	45.19	6.53
2146	2711	4.037565	AGGCAGTTTATATTTTAAGCCGCC	59.962	41.667	0.00	0.00	45.19	6.13
2147	2712	4.295870	GCAGTTTATATTTTAAGCCGCCC	58.704	43.478	0.00	0.00	0.00	6.13
2148	2713	4.202070	GCAGTTTATATTTTAAGCCGCCCA	60.202	41.667	0.00	0.00	0.00	5.36
2149	2714	5.680151	GCAGTTTATATTTTAAGCCGCCCAA	60.680	40.000	0.00	0.00	0.00	4.12
2150	2715	6.334202	CAGTTTATATTTTAAGCCGCCCAAA	58.666	36.000	0.00	0.00	0.00	3.28
2151	2716	6.814146	CAGTTTATATTTTAAGCCGCCCAAAA	59.186	34.615	3.06	3.06	0.00	2.44
2152	2717	7.010091	CAGTTTATATTTTAAGCCGCCCAAAAG	59.990	37.037	6.06	0.00	0.00	2.27
2153	2718	6.777213	TTATATTTTAAGCCGCCCAAAAGA	57.223	33.333	6.06	2.59	0.00	2.52
2154	2719	5.669164	ATATTTTAAGCCGCCCAAAAGAA	57.331	34.783	6.06	0.00	0.00	2.52
2155	2720	2.804697	TTTAAGCCGCCCAAAAGAAC	57.195	45.000	0.00	0.00	0.00	3.01
2156	2721	1.989706	TTAAGCCGCCCAAAAGAACT	58.010	45.000	0.00	0.00	0.00	3.01
2157	2722	1.530323	TAAGCCGCCCAAAAGAACTC	58.470	50.000	0.00	0.00	0.00	3.01
2158	2723	1.515521	AAGCCGCCCAAAAGAACTCG	61.516	55.000	0.00	0.00	0.00	4.18
2159	2724	2.561373	CCGCCCAAAAGAACTCGC	59.439	61.111	0.00	0.00	0.00	5.03
2160	2725	2.561373	CGCCCAAAAGAACTCGCC	59.439	61.111	0.00	0.00	0.00	5.54
2161	2726	2.962569	GCCCAAAAGAACTCGCCC	59.037	61.111	0.00	0.00	0.00	6.13
2162	2727	1.603739	GCCCAAAAGAACTCGCCCT	60.604	57.895	0.00	0.00	0.00	5.19
2163	2728	1.179174	GCCCAAAAGAACTCGCCCTT	61.179	55.000	0.00	0.00	0.00	3.95
2164	2729	1.884928	GCCCAAAAGAACTCGCCCTTA	60.885	52.381	0.00	0.00	0.00	2.69
2165	2730	2.084546	CCCAAAAGAACTCGCCCTTAG	58.915	52.381	0.00	0.00	0.00	2.18
2166	2731	2.552373	CCCAAAAGAACTCGCCCTTAGT	60.552	50.000	0.00	0.00	0.00	2.24
2167	2732	2.742589	CCAAAAGAACTCGCCCTTAGTC	59.257	50.000	0.00	0.00	0.00	2.59
2168	2733	3.557264	CCAAAAGAACTCGCCCTTAGTCT	60.557	47.826	0.00	0.00	0.00	3.24
2169	2734	3.320673	AAAGAACTCGCCCTTAGTCTG	57.679	47.619	0.00	0.00	0.00	3.51
2170	2735	1.926108	AGAACTCGCCCTTAGTCTGT	58.074	50.000	0.00	0.00	0.00	3.41
2171	2736	1.819903	AGAACTCGCCCTTAGTCTGTC	59.180	52.381	0.00	0.00	0.00	3.51
2172	2737	0.896226	AACTCGCCCTTAGTCTGTCC	59.104	55.000	0.00	0.00	0.00	4.02
2173	2738	1.313812	ACTCGCCCTTAGTCTGTCCG	61.314	60.000	0.00	0.00	0.00	4.79
2174	2739	2.202756	CGCCCTTAGTCTGTCCGC	60.203	66.667	0.00	0.00	0.00	5.54
2175	2740	2.711922	CGCCCTTAGTCTGTCCGCT	61.712	63.158	0.00	0.00	0.00	5.52
2176	2741	1.597461	GCCCTTAGTCTGTCCGCTT	59.403	57.895	0.00	0.00	0.00	4.68
2177	2742	0.460459	GCCCTTAGTCTGTCCGCTTC	60.460	60.000	0.00	0.00	0.00	3.86
2178	2743	0.895530	CCCTTAGTCTGTCCGCTTCA	59.104	55.000	0.00	0.00	0.00	3.02
2179	2744	1.275291	CCCTTAGTCTGTCCGCTTCAA	59.725	52.381	0.00	0.00	0.00	2.69
2180	2745	2.289444	CCCTTAGTCTGTCCGCTTCAAA	60.289	50.000	0.00	0.00	0.00	2.69
2181	2746	2.737252	CCTTAGTCTGTCCGCTTCAAAC	59.263	50.000	0.00	0.00	0.00	2.93
2182	2747	3.555168	CCTTAGTCTGTCCGCTTCAAACT	60.555	47.826	0.00	0.00	0.00	2.66
2183	2748	1.871080	AGTCTGTCCGCTTCAAACTG	58.129	50.000	0.00	0.00	0.00	3.16
2184	2749	1.139058	AGTCTGTCCGCTTCAAACTGT	59.861	47.619	0.00	0.00	0.00	3.55
2228	2794	9.287373	TGTGTAAAACGTCTTATAAAAGGGAAT	57.713	29.630	0.00	0.00	33.22	3.01
2263	2829	4.997395	ACAGTTTATTATATCAGCCAGCGG	59.003	41.667	0.00	0.00	0.00	5.52
2344	2942	7.915293	ATGATAGTACGATGAACACCAAAAA	57.085	32.000	0.00	0.00	0.00	1.94
2378	2976	5.192927	AGGAGTGACTAGATCTCAGTTGAG	58.807	45.833	0.00	2.69	43.36	3.02
2426	3024	8.147704	TCAAGTGACACAACATATACAAGAGAA	58.852	33.333	8.59	0.00	0.00	2.87
2427	3025	8.438513	CAAGTGACACAACATATACAAGAGAAG	58.561	37.037	8.59	0.00	0.00	2.85
2428	3026	7.896811	AGTGACACAACATATACAAGAGAAGA	58.103	34.615	8.59	0.00	0.00	2.87
2429	3027	8.367911	AGTGACACAACATATACAAGAGAAGAA	58.632	33.333	8.59	0.00	0.00	2.52
2431	3029	9.208022	TGACACAACATATACAAGAGAAGAAAG	57.792	33.333	0.00	0.00	0.00	2.62
2468	3066	8.045176	AGAAAACTTTACATAACTCTCCATGC	57.955	34.615	0.00	0.00	0.00	4.06
2477	3075	5.129980	ACATAACTCTCCATGCAAGATCTCA	59.870	40.000	0.00	0.00	0.00	3.27
2491	3089	8.699283	TGCAAGATCTCATGAATATAGAATCG	57.301	34.615	0.00	0.00	0.00	3.34
2502	3100	9.689976	CATGAATATAGAATCGACTCAGACTTT	57.310	33.333	0.00	0.00	0.00	2.66
2539	3137	4.636249	GACTGAGAATTAGCAATCCCGAT	58.364	43.478	0.00	0.00	0.00	4.18
2544	3142	7.012421	ACTGAGAATTAGCAATCCCGATAAAAC	59.988	37.037	0.00	0.00	0.00	2.43
2545	3143	7.054124	TGAGAATTAGCAATCCCGATAAAACT	58.946	34.615	0.00	0.00	0.00	2.66
2576	3196	8.923683	CATATAGACTACATGCACTGAAATGAG	58.076	37.037	0.00	0.00	0.00	2.90
2577	3197	5.157940	AGACTACATGCACTGAAATGAGT	57.842	39.130	0.00	0.00	0.00	3.41
2578	3198	5.555017	AGACTACATGCACTGAAATGAGTT	58.445	37.500	0.00	0.00	0.00	3.01
2579	3199	6.701340	AGACTACATGCACTGAAATGAGTTA	58.299	36.000	0.00	0.00	0.00	2.24
2583	3203	6.882610	ACATGCACTGAAATGAGTTAAAGA	57.117	33.333	0.00	0.00	0.00	2.52
2584	3204	6.672147	ACATGCACTGAAATGAGTTAAAGAC	58.328	36.000	0.00	0.00	0.00	3.01
2587	3207	4.319477	GCACTGAAATGAGTTAAAGACGCA	60.319	41.667	0.00	0.00	42.36	5.24
2589	3209	5.050091	CACTGAAATGAGTTAAAGACGCACT	60.050	40.000	0.00	0.00	40.95	4.40
2590	3210	5.050091	ACTGAAATGAGTTAAAGACGCACTG	60.050	40.000	0.00	0.00	40.95	3.66
2591	3211	3.813529	AATGAGTTAAAGACGCACTGC	57.186	42.857	0.00	0.00	40.95	4.40
2609	3229	3.917760	CGTCATCGCCCCTCCCTC	61.918	72.222	0.00	0.00	0.00	4.30
2611	3231	4.458829	TCATCGCCCCTCCCTCGT	62.459	66.667	0.00	0.00	0.00	4.18
2633	3253	1.805428	GAGCCGGGCACAACATGTTT	61.805	55.000	23.09	0.00	0.00	2.83
2635	3255	0.531753	GCCGGGCACAACATGTTTTT	60.532	50.000	15.62	0.00	0.00	1.94
2639	3259	3.049206	CGGGCACAACATGTTTTTGTAG	58.951	45.455	8.77	0.00	35.38	2.74
2645	3265	5.455525	GCACAACATGTTTTTGTAGACAGTC	59.544	40.000	8.77	0.00	35.38	3.51
2646	3266	6.550843	CACAACATGTTTTTGTAGACAGTCA	58.449	36.000	8.77	0.00	35.38	3.41
2650	3270	6.299141	ACATGTTTTTGTAGACAGTCAGGAT	58.701	36.000	2.66	0.00	0.00	3.24
2652	3272	4.515191	TGTTTTTGTAGACAGTCAGGATGC	59.485	41.667	2.66	0.00	34.76	3.91
2654	3274	1.937191	TGTAGACAGTCAGGATGCCA	58.063	50.000	2.66	0.00	34.76	4.92
2663	3283	0.390492	TCAGGATGCCATCGTGCTAG	59.610	55.000	19.82	0.03	43.01	3.42
2677	3297	4.242475	TCGTGCTAGTCTAAAACACCATG	58.758	43.478	0.00	0.00	0.00	3.66
2679	3299	4.091509	CGTGCTAGTCTAAAACACCATGAC	59.908	45.833	0.00	0.00	0.00	3.06
2680	3300	4.994852	GTGCTAGTCTAAAACACCATGACA	59.005	41.667	0.00	0.00	0.00	3.58
2684	3304	5.751243	AGTCTAAAACACCATGACAACAC	57.249	39.130	0.00	0.00	0.00	3.32
2687	3307	0.383949	AAACACCATGACAACACCGC	59.616	50.000	0.00	0.00	0.00	5.68
2688	3308	0.749818	AACACCATGACAACACCGCA	60.750	50.000	0.00	0.00	0.00	5.69
2706	3326	2.126307	CGAGGAGTCGGTGTGCAG	60.126	66.667	0.00	0.00	42.87	4.41
2707	3327	2.433318	GAGGAGTCGGTGTGCAGC	60.433	66.667	0.00	0.00	0.00	5.25
2732	3354	3.631127	GCGGCGCTAGTAGCTTGC	61.631	66.667	26.86	15.66	39.60	4.01
2737	3359	1.502163	GCGCTAGTAGCTTGCCCATG	61.502	60.000	19.66	3.07	39.60	3.66
2741	3363	2.292267	CTAGTAGCTTGCCCATGGTTG	58.708	52.381	11.73	0.00	0.00	3.77
2742	3364	0.967380	AGTAGCTTGCCCATGGTTGC	60.967	55.000	11.73	8.61	0.00	4.17
2743	3365	2.045708	TAGCTTGCCCATGGTTGCG	61.046	57.895	11.73	0.00	0.00	4.85
2745	3367	2.713967	GCTTGCCCATGGTTGCGAT	61.714	57.895	11.73	0.00	0.00	4.58
2755	3377	4.321601	CCCATGGTTGCGATTCTAAAACAA	60.322	41.667	11.73	0.00	0.00	2.83
2786	3408	8.534333	TCATTCTTGAGTTACACACTATCAAC	57.466	34.615	0.00	0.00	35.01	3.18
2801	3423	6.183360	ACACTATCAACATTTTGTCTTGTGCA	60.183	34.615	9.47	0.00	31.87	4.57
2803	3425	7.222417	CACTATCAACATTTTGTCTTGTGCAAA	59.778	33.333	0.00	0.00	34.02	3.68
2811	3433	7.927629	ACATTTTGTCTTGTGCAAATTGAGTAT	59.072	29.630	15.08	0.00	38.45	2.12
2826	3448	5.611796	TTGAGTATTCACAGATGTGCAAC	57.388	39.130	8.11	6.17	45.25	4.17
2910	3563	6.994421	AGATGTAAGGTTCCCATTTTGTTT	57.006	33.333	0.00	0.00	0.00	2.83
2912	3565	7.216494	AGATGTAAGGTTCCCATTTTGTTTTG	58.784	34.615	0.00	0.00	0.00	2.44
2913	3566	6.301169	TGTAAGGTTCCCATTTTGTTTTGT	57.699	33.333	0.00	0.00	0.00	2.83
2921	3574	5.888105	TCCCATTTTGTTTTGTGCAATTTG	58.112	33.333	0.00	0.00	0.00	2.32
2931	3584	6.128876	TGTTTTGTGCAATTTGAATAGCGATG	60.129	34.615	0.00	0.00	0.00	3.84
2935	3588	4.970003	GTGCAATTTGAATAGCGATGGTAC	59.030	41.667	0.00	0.00	0.00	3.34
2955	3608	7.752557	GGTACTTACCATTTTTCTCTCGTAG	57.247	40.000	0.17	0.00	45.73	3.51
2956	3609	7.542025	GGTACTTACCATTTTTCTCTCGTAGA	58.458	38.462	0.17	0.00	45.73	2.59
2957	3610	8.196103	GGTACTTACCATTTTTCTCTCGTAGAT	58.804	37.037	0.17	0.00	45.73	1.98
2991	3644	3.386078	TGGCTTCCAACTGTAAATTGCAA	59.614	39.130	0.00	0.00	0.00	4.08
3042	3699	7.718753	ACAAATAAAGGAAAAATGCATGTTGGA	59.281	29.630	1.98	0.00	0.00	3.53
3074	3731	3.400255	ACGTAGCCTTTTTGTTCTCTCC	58.600	45.455	0.00	0.00	0.00	3.71
3078	3735	1.807142	GCCTTTTTGTTCTCTCCGAGG	59.193	52.381	0.00	0.00	0.00	4.63
3084	3755	3.402628	TTGTTCTCTCCGAGGAAAAGG	57.597	47.619	0.00	0.00	0.00	3.11
3092	3763	1.064979	TCCGAGGAAAAGGGCCATAAC	60.065	52.381	6.18	0.00	0.00	1.89
3158	3836	2.959707	ACAAACAAACGCCCTCCAAATA	59.040	40.909	0.00	0.00	0.00	1.40
3167	3845	2.223572	CGCCCTCCAAATAGCAATTCAC	60.224	50.000	0.00	0.00	0.00	3.18
3171	3849	5.654497	CCCTCCAAATAGCAATTCACTTTC	58.346	41.667	0.00	0.00	0.00	2.62
3172	3850	5.394553	CCCTCCAAATAGCAATTCACTTTCC	60.395	44.000	0.00	0.00	0.00	3.13
3173	3851	5.309323	TCCAAATAGCAATTCACTTTCCG	57.691	39.130	0.00	0.00	0.00	4.30
3175	3853	5.242838	TCCAAATAGCAATTCACTTTCCGTT	59.757	36.000	0.00	0.00	0.00	4.44
3392	4148	7.517321	CACAAACATTTTAACTTGCAAACACT	58.483	30.769	0.00	0.00	0.00	3.55
3393	4149	8.651588	CACAAACATTTTAACTTGCAAACACTA	58.348	29.630	0.00	0.00	0.00	2.74
3410	4166	9.341899	GCAAACACTATAAAAGGTGTGAATAAG	57.658	33.333	0.00	0.00	44.54	1.73
3535	4793	3.251004	ACATTCCTGTTGAACTTTCTCGC	59.749	43.478	0.00	0.00	35.31	5.03
3536	4794	1.497991	TCCTGTTGAACTTTCTCGCG	58.502	50.000	0.00	0.00	0.00	5.87
3691	4951	7.174946	CCTTATAACTGTTCATCCAACAACACT	59.825	37.037	0.00	0.00	44.71	3.55
3730	4993	6.595326	CCATGCATGAGACTACTCTGTTTTTA	59.405	38.462	28.31	0.00	42.99	1.52
3779	5156	8.766000	AGTACGTCATATGACTATGAGACTAG	57.234	38.462	28.51	14.23	43.38	2.57
3780	5157	6.489127	ACGTCATATGACTATGAGACTAGC	57.511	41.667	28.51	3.15	43.38	3.42
3781	5158	5.413213	ACGTCATATGACTATGAGACTAGCC	59.587	44.000	28.51	2.74	43.38	3.93
3782	5159	5.412904	CGTCATATGACTATGAGACTAGCCA	59.587	44.000	28.51	0.00	43.38	4.75
3783	5160	6.616947	GTCATATGACTATGAGACTAGCCAC	58.383	44.000	25.52	0.00	43.38	5.01
3784	5161	6.207614	GTCATATGACTATGAGACTAGCCACA	59.792	42.308	25.52	0.00	43.38	4.17
3785	5162	6.777580	TCATATGACTATGAGACTAGCCACAA	59.222	38.462	0.00	0.00	39.03	3.33
3786	5163	5.939764	ATGACTATGAGACTAGCCACAAA	57.060	39.130	0.00	0.00	0.00	2.83
3787	5164	5.073311	TGACTATGAGACTAGCCACAAAC	57.927	43.478	0.00	0.00	0.00	2.93
3788	5165	4.526650	TGACTATGAGACTAGCCACAAACA	59.473	41.667	0.00	0.00	0.00	2.83
3789	5166	5.078411	ACTATGAGACTAGCCACAAACAG	57.922	43.478	0.00	0.00	0.00	3.16
3790	5167	2.839486	TGAGACTAGCCACAAACAGG	57.161	50.000	0.00	0.00	0.00	4.00
3791	5168	2.325484	TGAGACTAGCCACAAACAGGA	58.675	47.619	0.00	0.00	0.00	3.86
3792	5169	2.703536	TGAGACTAGCCACAAACAGGAA	59.296	45.455	0.00	0.00	0.00	3.36
3793	5170	3.327757	TGAGACTAGCCACAAACAGGAAT	59.672	43.478	0.00	0.00	0.00	3.01
3794	5171	4.530553	TGAGACTAGCCACAAACAGGAATA	59.469	41.667	0.00	0.00	0.00	1.75
3795	5172	5.012664	TGAGACTAGCCACAAACAGGAATAA	59.987	40.000	0.00	0.00	0.00	1.40
3796	5173	5.246307	AGACTAGCCACAAACAGGAATAAC	58.754	41.667	0.00	0.00	0.00	1.89
3797	5174	5.013183	AGACTAGCCACAAACAGGAATAACT	59.987	40.000	0.00	0.00	0.00	2.24
3798	5175	5.631119	ACTAGCCACAAACAGGAATAACTT	58.369	37.500	0.00	0.00	0.00	2.66
3799	5176	6.775708	ACTAGCCACAAACAGGAATAACTTA	58.224	36.000	0.00	0.00	0.00	2.24
3800	5177	6.879458	ACTAGCCACAAACAGGAATAACTTAG	59.121	38.462	0.00	0.00	0.00	2.18
3801	5178	5.876357	AGCCACAAACAGGAATAACTTAGA	58.124	37.500	0.00	0.00	0.00	2.10
3802	5179	6.303839	AGCCACAAACAGGAATAACTTAGAA	58.696	36.000	0.00	0.00	0.00	2.10
3803	5180	6.775629	AGCCACAAACAGGAATAACTTAGAAA	59.224	34.615	0.00	0.00	0.00	2.52
3804	5181	7.451566	AGCCACAAACAGGAATAACTTAGAAAT	59.548	33.333	0.00	0.00	0.00	2.17
3805	5182	7.542130	GCCACAAACAGGAATAACTTAGAAATG	59.458	37.037	0.00	0.00	0.00	2.32
3806	5183	7.542130	CCACAAACAGGAATAACTTAGAAATGC	59.458	37.037	0.00	0.00	0.00	3.56
3807	5184	8.081633	CACAAACAGGAATAACTTAGAAATGCA	58.918	33.333	0.00	0.00	0.00	3.96
3808	5185	8.806146	ACAAACAGGAATAACTTAGAAATGCAT	58.194	29.630	0.00	0.00	0.00	3.96
3812	5189	9.632638	ACAGGAATAACTTAGAAATGCATATGT	57.367	29.630	0.00	0.00	0.00	2.29
3857	5234	9.508642	TCTCTATAGTGAGGAGTAACATATGTG	57.491	37.037	9.63	0.00	34.98	3.21
3858	5235	9.290988	CTCTATAGTGAGGAGTAACATATGTGT	57.709	37.037	9.63	2.63	41.28	3.72
3859	5236	9.067986	TCTATAGTGAGGAGTAACATATGTGTG	57.932	37.037	9.63	0.00	38.92	3.82
3860	5237	7.898014	ATAGTGAGGAGTAACATATGTGTGA	57.102	36.000	9.63	0.00	38.92	3.58
3861	5238	6.798427	AGTGAGGAGTAACATATGTGTGAT	57.202	37.500	9.63	0.00	38.92	3.06
3862	5239	6.577103	AGTGAGGAGTAACATATGTGTGATG	58.423	40.000	9.63	0.00	38.92	3.07
3863	5240	6.155221	AGTGAGGAGTAACATATGTGTGATGT	59.845	38.462	9.63	0.00	38.92	3.06
3864	5241	7.342026	AGTGAGGAGTAACATATGTGTGATGTA	59.658	37.037	9.63	0.00	38.92	2.29
3865	5242	7.979537	GTGAGGAGTAACATATGTGTGATGTAA	59.020	37.037	9.63	0.00	38.92	2.41
3866	5243	8.704668	TGAGGAGTAACATATGTGTGATGTAAT	58.295	33.333	9.63	0.00	38.92	1.89
3867	5244	8.893219	AGGAGTAACATATGTGTGATGTAATG	57.107	34.615	9.63	0.00	38.92	1.90
3868	5245	7.442364	AGGAGTAACATATGTGTGATGTAATGC	59.558	37.037	9.63	1.69	38.92	3.56
3869	5246	7.226523	GGAGTAACATATGTGTGATGTAATGCA	59.773	37.037	9.63	0.00	38.92	3.96
3870	5247	8.504812	AGTAACATATGTGTGATGTAATGCAA	57.495	30.769	9.63	0.00	38.92	4.08
3871	5248	8.397906	AGTAACATATGTGTGATGTAATGCAAC	58.602	33.333	9.63	0.00	38.92	4.17
3872	5249	6.756299	ACATATGTGTGATGTAATGCAACA	57.244	33.333	7.78	0.00	37.14	3.33
3873	5250	6.554419	ACATATGTGTGATGTAATGCAACAC	58.446	36.000	7.78	8.32	46.85	3.32
3874	5251	6.375174	ACATATGTGTGATGTAATGCAACACT	59.625	34.615	7.78	5.41	46.81	3.55
3875	5252	5.710513	ATGTGTGATGTAATGCAACACTT	57.289	34.783	14.68	7.42	46.81	3.16
3876	5253	5.107109	TGTGTGATGTAATGCAACACTTC	57.893	39.130	14.68	11.68	46.81	3.01
3877	5254	4.578105	TGTGTGATGTAATGCAACACTTCA	59.422	37.500	14.68	13.64	46.81	3.02
3878	5255	5.241285	TGTGTGATGTAATGCAACACTTCAT	59.759	36.000	17.19	6.45	46.81	2.57
3879	5256	6.151691	GTGTGATGTAATGCAACACTTCATT	58.848	36.000	17.19	0.00	46.81	2.57
3880	5257	6.642131	GTGTGATGTAATGCAACACTTCATTT	59.358	34.615	17.19	0.00	46.81	2.32
3881	5258	7.807433	GTGTGATGTAATGCAACACTTCATTTA	59.193	33.333	17.19	8.76	46.81	1.40
3882	5259	8.522003	TGTGATGTAATGCAACACTTCATTTAT	58.478	29.630	17.19	0.00	46.81	1.40
3883	5260	9.357652	GTGATGTAATGCAACACTTCATTTATT	57.642	29.630	17.19	0.00	44.38	1.40
3887	5264	9.019656	TGTAATGCAACACTTCATTTATTAGGT	57.980	29.630	0.00	0.00	34.95	3.08
3888	5265	9.503427	GTAATGCAACACTTCATTTATTAGGTC	57.497	33.333	0.00	0.00	34.95	3.85
3889	5266	6.176975	TGCAACACTTCATTTATTAGGTCG	57.823	37.500	0.00	0.00	0.00	4.79
3890	5267	5.703592	TGCAACACTTCATTTATTAGGTCGT	59.296	36.000	0.00	0.00	0.00	4.34
3891	5268	6.874664	TGCAACACTTCATTTATTAGGTCGTA	59.125	34.615	0.00	0.00	0.00	3.43
3892	5269	7.064134	TGCAACACTTCATTTATTAGGTCGTAG	59.936	37.037	0.00	0.00	0.00	3.51
3893	5270	7.277098	GCAACACTTCATTTATTAGGTCGTAGA	59.723	37.037	0.00	0.00	0.00	2.59
3911	5288	7.809546	TCGTAGACTCATCTTGTCTTGATAT	57.190	36.000	1.67	0.00	41.45	1.63
3912	5289	7.643579	TCGTAGACTCATCTTGTCTTGATATG	58.356	38.462	1.67	0.00	41.45	1.78
3913	5290	7.283354	TCGTAGACTCATCTTGTCTTGATATGT	59.717	37.037	1.67	0.00	41.45	2.29
3914	5291	7.378194	CGTAGACTCATCTTGTCTTGATATGTG	59.622	40.741	1.67	0.00	41.45	3.21
3915	5292	7.180322	AGACTCATCTTGTCTTGATATGTGT	57.820	36.000	0.00	0.00	41.45	3.72
3916	5293	7.040494	AGACTCATCTTGTCTTGATATGTGTG	58.960	38.462	0.00	0.00	41.45	3.82
3917	5294	6.939622	ACTCATCTTGTCTTGATATGTGTGA	58.060	36.000	0.00	0.00	0.00	3.58
3918	5295	7.563020	ACTCATCTTGTCTTGATATGTGTGAT	58.437	34.615	0.00	0.00	0.00	3.06
3919	5296	7.494952	ACTCATCTTGTCTTGATATGTGTGATG	59.505	37.037	0.00	0.00	0.00	3.07
3920	5297	7.333323	TCATCTTGTCTTGATATGTGTGATGT	58.667	34.615	0.00	0.00	32.21	3.06
3921	5298	7.825761	TCATCTTGTCTTGATATGTGTGATGTT	59.174	33.333	0.00	0.00	32.21	2.71
3922	5299	9.101655	CATCTTGTCTTGATATGTGTGATGTTA	57.898	33.333	0.00	0.00	0.00	2.41
3923	5300	8.479313	TCTTGTCTTGATATGTGTGATGTTAC	57.521	34.615	0.00	0.00	0.00	2.50
3924	5301	8.314021	TCTTGTCTTGATATGTGTGATGTTACT	58.686	33.333	0.00	0.00	0.00	2.24
3925	5302	8.846943	TTGTCTTGATATGTGTGATGTTACTT	57.153	30.769	0.00	0.00	0.00	2.24
3926	5303	9.936759	TTGTCTTGATATGTGTGATGTTACTTA	57.063	29.630	0.00	0.00	0.00	2.24
3955	5332	7.655521	ATGAGTAACTAGCTATGTTACCACA	57.344	36.000	25.92	24.92	46.31	4.17
3956	5333	7.655521	TGAGTAACTAGCTATGTTACCACAT	57.344	36.000	25.92	16.36	46.31	3.21
3957	5334	7.489160	TGAGTAACTAGCTATGTTACCACATG	58.511	38.462	25.92	0.00	46.31	3.21
3958	5335	6.281405	AGTAACTAGCTATGTTACCACATGC	58.719	40.000	25.92	11.98	46.31	4.06
3959	5336	4.073293	ACTAGCTATGTTACCACATGCC	57.927	45.455	0.00	0.00	43.92	4.40
3960	5337	3.711704	ACTAGCTATGTTACCACATGCCT	59.288	43.478	0.00	0.00	43.92	4.75
3961	5338	3.199880	AGCTATGTTACCACATGCCTC	57.800	47.619	0.00	0.00	43.92	4.70
3962	5339	2.774234	AGCTATGTTACCACATGCCTCT	59.226	45.455	0.00	0.00	43.92	3.69
3963	5340	3.200825	AGCTATGTTACCACATGCCTCTT	59.799	43.478	0.00	0.00	43.92	2.85
3964	5341	3.947834	GCTATGTTACCACATGCCTCTTT	59.052	43.478	0.00	0.00	43.92	2.52
3965	5342	4.399303	GCTATGTTACCACATGCCTCTTTT	59.601	41.667	0.00	0.00	43.92	2.27
3966	5343	5.105756	GCTATGTTACCACATGCCTCTTTTT	60.106	40.000	0.00	0.00	43.92	1.94
3967	5344	4.846779	TGTTACCACATGCCTCTTTTTC	57.153	40.909	0.00	0.00	0.00	2.29
3968	5345	4.469657	TGTTACCACATGCCTCTTTTTCT	58.530	39.130	0.00	0.00	0.00	2.52
3969	5346	4.892934	TGTTACCACATGCCTCTTTTTCTT	59.107	37.500	0.00	0.00	0.00	2.52
3970	5347	5.009610	TGTTACCACATGCCTCTTTTTCTTC	59.990	40.000	0.00	0.00	0.00	2.87
3971	5348	3.565307	ACCACATGCCTCTTTTTCTTCA	58.435	40.909	0.00	0.00	0.00	3.02
3972	5349	4.154942	ACCACATGCCTCTTTTTCTTCAT	58.845	39.130	0.00	0.00	0.00	2.57
3973	5350	4.590222	ACCACATGCCTCTTTTTCTTCATT	59.410	37.500	0.00	0.00	0.00	2.57
3974	5351	5.070847	ACCACATGCCTCTTTTTCTTCATTT	59.929	36.000	0.00	0.00	0.00	2.32
3975	5352	6.267471	ACCACATGCCTCTTTTTCTTCATTTA	59.733	34.615	0.00	0.00	0.00	1.40
3976	5353	7.038799	ACCACATGCCTCTTTTTCTTCATTTAT	60.039	33.333	0.00	0.00	0.00	1.40
3977	5354	7.820872	CCACATGCCTCTTTTTCTTCATTTATT	59.179	33.333	0.00	0.00	0.00	1.40
3978	5355	9.211485	CACATGCCTCTTTTTCTTCATTTATTT	57.789	29.630	0.00	0.00	0.00	1.40
4037	5414	8.966155	TGATATTACCATCTATGTTACTCCCA	57.034	34.615	0.00	0.00	0.00	4.37
4038	5415	9.560860	TGATATTACCATCTATGTTACTCCCAT	57.439	33.333	0.00	0.00	0.00	4.00
4040	5417	4.873746	ACCATCTATGTTACTCCCATCG	57.126	45.455	0.00	0.00	0.00	3.84
4041	5418	4.223953	ACCATCTATGTTACTCCCATCGT	58.776	43.478	0.00	0.00	0.00	3.73
4042	5419	5.391256	ACCATCTATGTTACTCCCATCGTA	58.609	41.667	0.00	0.00	0.00	3.43
4043	5420	5.477291	ACCATCTATGTTACTCCCATCGTAG	59.523	44.000	0.00	0.00	0.00	3.51
4044	5421	5.105716	CCATCTATGTTACTCCCATCGTAGG	60.106	48.000	0.00	0.00	0.00	3.18
4045	5422	5.057843	TCTATGTTACTCCCATCGTAGGT	57.942	43.478	0.00	0.00	0.00	3.08
4046	5423	6.191657	TCTATGTTACTCCCATCGTAGGTA	57.808	41.667	0.00	0.00	0.00	3.08
4047	5424	6.236409	TCTATGTTACTCCCATCGTAGGTAG	58.764	44.000	0.00	0.00	0.00	3.18
4051	5428	5.766670	TGTTACTCCCATCGTAGGTAGTATG	59.233	44.000	3.17	0.00	0.00	2.39
4060	5437	5.541953	TCGTAGGTAGTATGAGACTGCTA	57.458	43.478	0.00	0.00	40.43	3.49
4075	5469	2.031157	ACTGCTATGTTTTTCCGTGTGC	60.031	45.455	0.00	0.00	0.00	4.57
4184	5590	1.539496	GCAATGGCCGAAATGATGCAT	60.539	47.619	0.00	0.00	32.80	3.96
4228	5634	4.540153	GCAGGAGCTTGCCGATAA	57.460	55.556	0.00	0.00	38.13	1.75
4257	5663	1.731969	GACCGAAACGTGGACGAGG	60.732	63.158	6.12	6.25	43.02	4.63
4292	5698	2.616510	CCTCTCCTTCCTCAAATGCGTT	60.617	50.000	0.00	0.00	0.00	4.84
4340	5746	4.779733	ATCCCGCTCCTCCACCGT	62.780	66.667	0.00	0.00	0.00	4.83
4349	5755	2.651361	CTCCACCGTGAGAACGCT	59.349	61.111	0.00	0.00	34.11	5.07
4376	5783	1.606601	TGTGGTCGGCAGCTACTCT	60.607	57.895	0.00	0.00	0.00	3.24
4606	6013	0.647410	CTGGAGCTCGTTATTGCACG	59.353	55.000	7.83	0.00	41.78	5.34
4757	6165	2.890311	CTGCCCTTTGGTTGTTGATGTA	59.110	45.455	0.00	0.00	0.00	2.29
4763	6171	1.424403	TGGTTGTTGATGTAGACGCG	58.576	50.000	3.53	3.53	0.00	6.01
4866	6274	7.912250	GCGTGTTAGTTAATCTAGTTGTAGCTA	59.088	37.037	0.00	0.00	0.00	3.32
4902	6311	7.418712	CCCCTTTCGTGTTAGATATTTCCTAGT	60.419	40.741	0.00	0.00	0.00	2.57
4909	6318	8.529911	CGTGTTAGATATTTCCTAGTTTCGTTC	58.470	37.037	0.00	0.00	0.00	3.95
4937	6346	1.416243	TCGCACCCCTATAAATCGGT	58.584	50.000	0.00	0.00	0.00	4.69
4945	6354	2.293399	CCCTATAAATCGGTTGCCTTGC	59.707	50.000	0.00	0.00	0.00	4.01
4962	6371	0.319986	TGCACGTGGAATAGCACGAA	60.320	50.000	18.88	0.00	46.46	3.85
4964	6373	1.710013	CACGTGGAATAGCACGAACT	58.290	50.000	7.95	0.00	46.46	3.01
4970	6379	3.250040	GTGGAATAGCACGAACTGTTGTT	59.750	43.478	0.00	0.00	39.42	2.83
4986	6395	1.672356	GTTGGCATCGTGGAGCTGT	60.672	57.895	0.00	0.00	0.00	4.40
5029	6438	5.829924	TCATCATGAATAAAAAGGAGAGCCC	59.170	40.000	0.00	0.00	33.31	5.19
5061	6471	3.891049	CTCCCCCTAACTCAATTTCCTG	58.109	50.000	0.00	0.00	0.00	3.86
5081	6491	4.120085	GGTATTCTTGACCCCGCG	57.880	61.111	0.00	0.00	0.00	6.46
5082	6492	1.518774	GGTATTCTTGACCCCGCGA	59.481	57.895	8.23	0.00	0.00	5.87
5083	6493	0.529992	GGTATTCTTGACCCCGCGAG	60.530	60.000	8.23	0.00	0.00	5.03
5084	6494	0.458669	GTATTCTTGACCCCGCGAGA	59.541	55.000	8.23	0.00	0.00	4.04
5085	6495	0.458669	TATTCTTGACCCCGCGAGAC	59.541	55.000	8.23	0.00	0.00	3.36
5124	6557	1.308304	TAGCCCATACCAAGCCCCA	60.308	57.895	0.00	0.00	0.00	4.96
5125	6558	1.641552	TAGCCCATACCAAGCCCCAC	61.642	60.000	0.00	0.00	0.00	4.61
5131	6564	2.357673	CCATACCAAGCCCCACATAACA	60.358	50.000	0.00	0.00	0.00	2.41
5204	6654	1.909781	GACCCCACGACCAGGTACA	60.910	63.158	0.00	0.00	32.81	2.90
5220	6670	3.741476	CAACCTGCCGAAGCCAGC	61.741	66.667	0.00	0.00	38.69	4.85
5246	6696	3.982475	TCAATCACGTAGCTCCATCATC	58.018	45.455	0.00	0.00	0.00	2.92
5360	6810	1.811266	CGTCATGAACCTCCAGCGG	60.811	63.158	0.00	0.00	0.00	5.52
5370	6820	2.758327	TCCAGCGGTCGCAGGTAT	60.758	61.111	22.45	0.00	46.17	2.73
5379	6829	2.357517	CGCAGGTATCGCATCCCC	60.358	66.667	0.00	0.00	0.00	4.81
5380	6830	2.828868	GCAGGTATCGCATCCCCA	59.171	61.111	0.00	0.00	0.00	4.96
5381	6831	1.598130	GCAGGTATCGCATCCCCAC	60.598	63.158	0.00	0.00	0.00	4.61
5392	6847	2.450476	GCATCCCCACTCATTTGTCTT	58.550	47.619	0.00	0.00	0.00	3.01
5452	6907	2.102578	GTAGTGGTTAACCTAGCGGGA	58.897	52.381	24.78	0.01	38.76	5.14
5464	6919	1.680207	CTAGCGGGACAGGTAACCTAC	59.320	57.143	0.00	0.00	29.64	3.18
5480	6935	3.264845	ACCTTTCCGGTGGCCCAT	61.265	61.111	0.00	0.00	46.80	4.00
5508	6963	2.094182	GCGGATCTTGTTCTGGTAGTGA	60.094	50.000	0.00	0.00	0.00	3.41
5538	6995	2.921121	GTGATACAAAGTGATCACGCGA	59.079	45.455	19.85	5.89	41.75	5.87
5546	7003	0.299003	GTGATCACGCGAGCTAAAGC	59.701	55.000	15.93	0.00	42.49	3.51
5631	7089	1.890876	TATTTGATGCGGCGGCTAAT	58.109	45.000	17.76	12.86	40.82	1.73
5694	7196	2.101415	TCTCGCGATCCAAAGTGATCAT	59.899	45.455	10.36	0.00	41.00	2.45
5734	7237	3.508793	TCTTCCTTACTAGGGTTGACGTG	59.491	47.826	0.00	0.00	42.26	4.49
5740	7243	2.185387	ACTAGGGTTGACGTGCCTTAT	58.815	47.619	0.00	0.00	0.00	1.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	8.663911	CCAAAACAAGTGCTTAAAAGATTTGAA	58.336	29.630	0.00	0.00	0.00	2.69
34	35	7.821846	ACCAAAACAAGTGCTTAAAAGATTTGA	59.178	29.630	0.00	0.00	0.00	2.69
35	36	7.904461	CACCAAAACAAGTGCTTAAAAGATTTG	59.096	33.333	0.00	0.00	0.00	2.32
39	40	5.415221	CCACCAAAACAAGTGCTTAAAAGA	58.585	37.500	0.00	0.00	32.48	2.52
40	41	4.570369	CCCACCAAAACAAGTGCTTAAAAG	59.430	41.667	0.00	0.00	32.48	2.27
102	103	2.695147	GGGCCTGACTCAATAAAATGGG	59.305	50.000	0.84	0.00	0.00	4.00
113	114	0.033228	CATCGATCAGGGCCTGACTC	59.967	60.000	37.24	29.37	43.63	3.36
158	159	4.526970	CATCTCTGCATTGGTTCTTACG	57.473	45.455	0.00	0.00	0.00	3.18
195	196	4.279169	ACAAGATGTGGATGTTGTTTCCTG	59.721	41.667	0.00	0.00	41.99	3.86
230	231	4.744570	TCCATGTCAGATCGTACTTGTTC	58.255	43.478	12.27	0.00	0.00	3.18
270	271	4.170292	GTACCTATATGCACGGGTACTG	57.830	50.000	21.69	0.00	46.11	2.74
273	274	5.005740	CACTAGTACCTATATGCACGGGTA	58.994	45.833	0.00	0.00	33.74	3.69
274	275	3.825014	CACTAGTACCTATATGCACGGGT	59.175	47.826	0.00	0.00	36.02	5.28
275	276	3.367087	GCACTAGTACCTATATGCACGGG	60.367	52.174	0.00	0.00	32.03	5.28
276	277	3.506455	AGCACTAGTACCTATATGCACGG	59.494	47.826	0.00	0.00	33.27	4.94
277	278	4.476862	CAGCACTAGTACCTATATGCACG	58.523	47.826	0.00	0.00	33.27	5.34
278	279	4.238514	GCAGCACTAGTACCTATATGCAC	58.761	47.826	0.00	0.00	33.27	4.57
279	280	3.895041	TGCAGCACTAGTACCTATATGCA	59.105	43.478	0.00	0.00	38.70	3.96
280	281	4.521130	TGCAGCACTAGTACCTATATGC	57.479	45.455	0.00	0.00	31.93	3.14
281	282	7.786178	TTTTTGCAGCACTAGTACCTATATG	57.214	36.000	0.00	0.00	0.00	1.78
282	283	8.210946	TGATTTTTGCAGCACTAGTACCTATAT	58.789	33.333	0.00	0.00	0.00	0.86
283	284	7.494625	GTGATTTTTGCAGCACTAGTACCTATA	59.505	37.037	0.00	0.00	0.00	1.31
284	285	6.316390	GTGATTTTTGCAGCACTAGTACCTAT	59.684	38.462	0.00	0.00	0.00	2.57
285	286	5.642063	GTGATTTTTGCAGCACTAGTACCTA	59.358	40.000	0.00	0.00	0.00	3.08
286	287	4.455877	GTGATTTTTGCAGCACTAGTACCT	59.544	41.667	0.00	0.00	0.00	3.08
287	288	4.215399	TGTGATTTTTGCAGCACTAGTACC	59.785	41.667	0.00	0.00	32.69	3.34
288	289	5.049405	ACTGTGATTTTTGCAGCACTAGTAC	60.049	40.000	0.00	0.00	33.87	2.73
289	290	5.063204	ACTGTGATTTTTGCAGCACTAGTA	58.937	37.500	0.00	0.00	33.87	1.82
290	291	3.885297	ACTGTGATTTTTGCAGCACTAGT	59.115	39.130	0.00	0.00	33.87	2.57
291	292	4.494350	ACTGTGATTTTTGCAGCACTAG	57.506	40.909	0.00	0.00	33.87	2.57
292	293	5.123820	GGATACTGTGATTTTTGCAGCACTA	59.876	40.000	0.00	0.00	33.87	2.74
293	294	4.082571	GGATACTGTGATTTTTGCAGCACT	60.083	41.667	0.00	0.00	33.87	4.40
294	295	4.168760	GGATACTGTGATTTTTGCAGCAC	58.831	43.478	0.00	0.00	33.87	4.40
295	296	3.119884	CGGATACTGTGATTTTTGCAGCA	60.120	43.478	0.00	0.00	33.87	4.41
296	297	3.119849	ACGGATACTGTGATTTTTGCAGC	60.120	43.478	0.00	0.00	33.87	5.25
297	298	4.406069	CACGGATACTGTGATTTTTGCAG	58.594	43.478	4.92	0.00	41.53	4.41
298	299	3.365868	GCACGGATACTGTGATTTTTGCA	60.366	43.478	13.83	0.00	41.53	4.08
299	300	3.171277	GCACGGATACTGTGATTTTTGC	58.829	45.455	13.83	0.00	41.53	3.68
300	301	4.418013	TGCACGGATACTGTGATTTTTG	57.582	40.909	13.83	0.00	41.53	2.44
301	302	6.942532	ATATGCACGGATACTGTGATTTTT	57.057	33.333	13.83	0.00	41.53	1.94
302	303	6.650807	CCTATATGCACGGATACTGTGATTTT	59.349	38.462	13.83	0.15	41.53	1.82
303	304	6.166279	CCTATATGCACGGATACTGTGATTT	58.834	40.000	13.83	1.63	41.53	2.17
304	305	5.246203	ACCTATATGCACGGATACTGTGATT	59.754	40.000	13.83	3.72	41.53	2.57
325	326	4.911390	AGATTTTTGCAGCACTAGTACCT	58.089	39.130	0.00	0.00	0.00	3.08
382	408	2.361375	TGCAGCAATGGCATCCCT	59.639	55.556	0.00	0.00	44.61	4.20
395	421	5.701750	AGCTTAATTATGAGAGCTGATGCAG	59.298	40.000	8.30	0.00	43.37	4.41
442	468	4.760204	GGTTTAGACAATTAGTGGTGTGCT	59.240	41.667	0.00	0.00	0.00	4.40
443	469	4.760204	AGGTTTAGACAATTAGTGGTGTGC	59.240	41.667	0.00	0.00	0.00	4.57
444	470	9.661563	TTATAGGTTTAGACAATTAGTGGTGTG	57.338	33.333	0.00	0.00	0.00	3.82
468	509	1.543871	GGCACCGGTGGAGAAACTTTA	60.544	52.381	34.58	0.00	0.00	1.85
551	592	7.226720	ACAAAAACGATACATCAGTCTTCTTGT	59.773	33.333	0.00	0.00	0.00	3.16
555	596	6.797033	CCAACAAAAACGATACATCAGTCTTC	59.203	38.462	0.00	0.00	0.00	2.87
569	610	1.403679	TGAGGCAGACCAACAAAAACG	59.596	47.619	0.00	0.00	39.06	3.60
574	615	1.699083	TGAGATGAGGCAGACCAACAA	59.301	47.619	0.00	0.00	39.06	2.83
575	616	1.351076	TGAGATGAGGCAGACCAACA	58.649	50.000	0.00	0.00	39.06	3.33
577	618	1.003580	GGTTGAGATGAGGCAGACCAA	59.996	52.381	0.00	0.00	39.06	3.67
596	637	7.097834	GGTTTCCGTATGATATTCTTCCTAGG	58.902	42.308	0.82	0.82	0.00	3.02
597	638	7.667557	TGGTTTCCGTATGATATTCTTCCTAG	58.332	38.462	0.00	0.00	0.00	3.02
599	640	6.494666	TGGTTTCCGTATGATATTCTTCCT	57.505	37.500	0.00	0.00	0.00	3.36
610	651	9.019764	GTTTCATTGAATATTGGTTTCCGTATG	57.980	33.333	0.00	0.00	0.00	2.39
628	669	6.923928	ATGGTTTTCACAAAGGTTTCATTG	57.076	33.333	0.00	0.00	0.00	2.82
630	671	9.625747	AAAATATGGTTTTCACAAAGGTTTCAT	57.374	25.926	0.00	0.00	0.00	2.57
678	719	5.662208	TCACCCTCTTAACATCCCGTATTTA	59.338	40.000	0.00	0.00	0.00	1.40
683	726	1.946984	TCACCCTCTTAACATCCCGT	58.053	50.000	0.00	0.00	0.00	5.28
687	730	7.702348	GCAATAAAACATCACCCTCTTAACATC	59.298	37.037	0.00	0.00	0.00	3.06
698	741	2.258755	GCGTGGCAATAAAACATCACC	58.741	47.619	0.00	0.00	0.00	4.02
719	762	9.307121	TCGTAATGTGTTTCAACATGAAATTTT	57.693	25.926	8.59	4.20	46.55	1.82
720	763	8.864069	TCGTAATGTGTTTCAACATGAAATTT	57.136	26.923	8.59	0.00	46.55	1.82
735	778	5.141182	AGAGGGTCATATCTCGTAATGTGT	58.859	41.667	0.00	0.00	35.34	3.72
736	779	5.713792	AGAGGGTCATATCTCGTAATGTG	57.286	43.478	0.00	0.00	35.34	3.21
737	780	6.071840	GCTAAGAGGGTCATATCTCGTAATGT	60.072	42.308	0.00	0.00	35.34	2.71
738	781	6.071896	TGCTAAGAGGGTCATATCTCGTAATG	60.072	42.308	0.00	0.00	35.34	1.90
739	782	6.010850	TGCTAAGAGGGTCATATCTCGTAAT	58.989	40.000	0.00	0.00	35.34	1.89
740	783	5.382616	TGCTAAGAGGGTCATATCTCGTAA	58.617	41.667	0.00	0.00	35.34	3.18
741	784	4.981812	TGCTAAGAGGGTCATATCTCGTA	58.018	43.478	0.00	0.00	35.34	3.43
742	785	3.833732	TGCTAAGAGGGTCATATCTCGT	58.166	45.455	0.00	0.00	35.34	4.18
743	786	4.704540	AGATGCTAAGAGGGTCATATCTCG	59.295	45.833	0.00	0.00	35.34	4.04
745	788	4.704540	CGAGATGCTAAGAGGGTCATATCT	59.295	45.833	0.00	0.00	0.00	1.98
746	789	4.461081	ACGAGATGCTAAGAGGGTCATATC	59.539	45.833	0.00	0.00	0.00	1.63
748	791	3.833732	ACGAGATGCTAAGAGGGTCATA	58.166	45.455	0.00	0.00	0.00	2.15
749	792	2.672098	ACGAGATGCTAAGAGGGTCAT	58.328	47.619	0.00	0.00	0.00	3.06
750	793	2.145397	ACGAGATGCTAAGAGGGTCA	57.855	50.000	0.00	0.00	0.00	4.02
751	794	4.038162	ACAATACGAGATGCTAAGAGGGTC	59.962	45.833	0.00	0.00	0.00	4.46
827	876	8.047310	GGGAGAATATCATACGGAAACCAATAT	58.953	37.037	0.00	0.00	0.00	1.28
828	877	7.391620	GGGAGAATATCATACGGAAACCAATA	58.608	38.462	0.00	0.00	0.00	1.90
851	900	0.538057	TTGCAGCAGAAGTTGAGGGG	60.538	55.000	0.00	0.00	0.00	4.79
867	916	4.814771	GGATGCCGGGTAATATATAGTTGC	59.185	45.833	2.18	0.00	0.00	4.17
1257	1383	2.408022	GCGTACTCTGGCGTCGAT	59.592	61.111	0.00	0.00	0.00	3.59
1266	1392	2.283966	ACCTGCTGGGCGTACTCT	60.284	61.111	14.82	0.00	39.10	3.24
1515	1641	2.915659	AGGTCGCCGAGGTTGACA	60.916	61.111	15.03	0.00	34.32	3.58
1743	1887	1.810532	GATGAACTCGTCGAGGGCT	59.189	57.895	25.25	10.04	33.35	5.19
1801	1945	2.571757	GGCGTCCATGTCGTCAGA	59.428	61.111	7.15	0.00	32.96	3.27
1832	1976	2.203126	GGAGGAAGGCGAGCATGG	60.203	66.667	0.00	0.00	0.00	3.66
1929	2086	3.069074	GTGCGTGTACGTACCATGATA	57.931	47.619	22.43	0.00	46.64	2.15
1952	2109	8.801299	TGCTAGAAACAAATAATGGATGTTTGA	58.199	29.630	7.74	0.00	44.72	2.69
2031	2596	9.952188	AAATTTATCGAGGCTTCTAAATTAAGC	57.048	29.630	12.98	3.27	46.90	3.09
2035	2600	8.197439	CCCAAAATTTATCGAGGCTTCTAAATT	58.803	33.333	8.93	8.93	36.06	1.82
2036	2601	7.559897	TCCCAAAATTTATCGAGGCTTCTAAAT	59.440	33.333	0.00	0.00	0.00	1.40
2037	2602	6.887545	TCCCAAAATTTATCGAGGCTTCTAAA	59.112	34.615	0.00	0.00	0.00	1.85
2038	2603	6.419791	TCCCAAAATTTATCGAGGCTTCTAA	58.580	36.000	0.00	0.00	0.00	2.10
2039	2604	5.996644	TCCCAAAATTTATCGAGGCTTCTA	58.003	37.500	0.00	0.00	0.00	2.10
2040	2605	4.855340	TCCCAAAATTTATCGAGGCTTCT	58.145	39.130	0.00	0.00	0.00	2.85
2041	2606	5.340803	GTTCCCAAAATTTATCGAGGCTTC	58.659	41.667	0.00	0.00	0.00	3.86
2042	2607	4.142469	CGTTCCCAAAATTTATCGAGGCTT	60.142	41.667	0.00	0.00	0.00	4.35
2043	2608	3.377172	CGTTCCCAAAATTTATCGAGGCT	59.623	43.478	0.00	0.00	0.00	4.58
2044	2609	3.488553	CCGTTCCCAAAATTTATCGAGGC	60.489	47.826	0.00	0.00	0.00	4.70
2045	2610	3.488553	GCCGTTCCCAAAATTTATCGAGG	60.489	47.826	0.00	0.00	0.00	4.63
2046	2611	3.377172	AGCCGTTCCCAAAATTTATCGAG	59.623	43.478	0.00	0.00	0.00	4.04
2047	2612	3.349022	AGCCGTTCCCAAAATTTATCGA	58.651	40.909	0.00	0.00	0.00	3.59
2048	2613	3.775661	AGCCGTTCCCAAAATTTATCG	57.224	42.857	0.00	0.00	0.00	2.92
2049	2614	8.487313	AAAATAAGCCGTTCCCAAAATTTATC	57.513	30.769	0.00	0.00	0.00	1.75
2050	2615	8.856153	AAAAATAAGCCGTTCCCAAAATTTAT	57.144	26.923	0.00	0.00	0.00	1.40
2072	2637	7.582667	AAACTGCCTCTTTCTAGCTTAAAAA	57.417	32.000	0.00	0.00	0.00	1.94
2073	2638	8.863872	ATAAACTGCCTCTTTCTAGCTTAAAA	57.136	30.769	0.00	0.00	0.00	1.52
2074	2639	8.863872	AATAAACTGCCTCTTTCTAGCTTAAA	57.136	30.769	0.00	0.00	0.00	1.52
2075	2640	8.863872	AAATAAACTGCCTCTTTCTAGCTTAA	57.136	30.769	0.00	0.00	0.00	1.85
2076	2641	8.863872	AAAATAAACTGCCTCTTTCTAGCTTA	57.136	30.769	0.00	0.00	0.00	3.09
2077	2642	7.767250	AAAATAAACTGCCTCTTTCTAGCTT	57.233	32.000	0.00	0.00	0.00	3.74
2078	2643	7.767250	AAAAATAAACTGCCTCTTTCTAGCT	57.233	32.000	0.00	0.00	0.00	3.32
2119	2684	6.038271	CGGCTTAAAATATAAACTGCCTGAGT	59.962	38.462	0.00	0.00	37.22	3.41
2120	2685	6.430451	CGGCTTAAAATATAAACTGCCTGAG	58.570	40.000	0.00	0.00	37.22	3.35
2121	2686	5.220970	GCGGCTTAAAATATAAACTGCCTGA	60.221	40.000	0.00	0.00	37.22	3.86
2122	2687	4.976116	GCGGCTTAAAATATAAACTGCCTG	59.024	41.667	0.00	0.00	37.22	4.85
2123	2688	4.037565	GGCGGCTTAAAATATAAACTGCCT	59.962	41.667	12.12	0.00	37.22	4.75
2124	2689	4.295870	GGCGGCTTAAAATATAAACTGCC	58.704	43.478	0.00	5.88	36.14	4.85
2125	2690	4.202070	TGGGCGGCTTAAAATATAAACTGC	60.202	41.667	9.56	0.00	0.00	4.40
2126	2691	5.508200	TGGGCGGCTTAAAATATAAACTG	57.492	39.130	9.56	0.00	0.00	3.16
2127	2692	6.532988	TTTGGGCGGCTTAAAATATAAACT	57.467	33.333	9.56	0.00	0.00	2.66
2128	2693	7.036829	TCTTTTGGGCGGCTTAAAATATAAAC	58.963	34.615	19.02	0.00	0.00	2.01
2129	2694	7.171630	TCTTTTGGGCGGCTTAAAATATAAA	57.828	32.000	19.02	3.37	0.00	1.40
2130	2695	6.777213	TCTTTTGGGCGGCTTAAAATATAA	57.223	33.333	19.02	7.97	0.00	0.98
2131	2696	6.378848	AGTTCTTTTGGGCGGCTTAAAATATA	59.621	34.615	19.02	9.66	0.00	0.86
2132	2697	5.186992	AGTTCTTTTGGGCGGCTTAAAATAT	59.813	36.000	19.02	8.02	0.00	1.28
2133	2698	4.525100	AGTTCTTTTGGGCGGCTTAAAATA	59.475	37.500	19.02	12.60	0.00	1.40
2134	2699	3.323691	AGTTCTTTTGGGCGGCTTAAAAT	59.676	39.130	19.02	7.27	0.00	1.82
2135	2700	2.696187	AGTTCTTTTGGGCGGCTTAAAA	59.304	40.909	9.56	15.26	0.00	1.52
2136	2701	2.295070	GAGTTCTTTTGGGCGGCTTAAA	59.705	45.455	9.56	8.36	0.00	1.52
2137	2702	1.883926	GAGTTCTTTTGGGCGGCTTAA	59.116	47.619	9.56	1.63	0.00	1.85
2138	2703	1.530323	GAGTTCTTTTGGGCGGCTTA	58.470	50.000	9.56	0.00	0.00	3.09
2139	2704	1.515521	CGAGTTCTTTTGGGCGGCTT	61.516	55.000	9.56	0.00	0.00	4.35
2140	2705	1.966451	CGAGTTCTTTTGGGCGGCT	60.966	57.895	9.56	0.00	0.00	5.52
2141	2706	2.561373	CGAGTTCTTTTGGGCGGC	59.439	61.111	0.00	0.00	0.00	6.53
2142	2707	2.561373	GCGAGTTCTTTTGGGCGG	59.439	61.111	0.00	0.00	0.00	6.13
2143	2708	2.561373	GGCGAGTTCTTTTGGGCG	59.439	61.111	0.00	0.00	0.00	6.13
2144	2709	1.179174	AAGGGCGAGTTCTTTTGGGC	61.179	55.000	0.00	0.00	0.00	5.36
2145	2710	2.084546	CTAAGGGCGAGTTCTTTTGGG	58.915	52.381	0.00	0.00	0.00	4.12
2146	2711	2.742589	GACTAAGGGCGAGTTCTTTTGG	59.257	50.000	0.00	0.00	0.00	3.28
2147	2712	3.433615	CAGACTAAGGGCGAGTTCTTTTG	59.566	47.826	0.00	0.00	0.00	2.44
2148	2713	3.071167	ACAGACTAAGGGCGAGTTCTTTT	59.929	43.478	0.00	0.00	0.00	2.27
2149	2714	2.633481	ACAGACTAAGGGCGAGTTCTTT	59.367	45.455	0.00	0.00	0.00	2.52
2150	2715	2.231721	GACAGACTAAGGGCGAGTTCTT	59.768	50.000	0.00	0.00	0.00	2.52
2151	2716	1.819903	GACAGACTAAGGGCGAGTTCT	59.180	52.381	0.00	0.00	0.00	3.01
2152	2717	1.135053	GGACAGACTAAGGGCGAGTTC	60.135	57.143	0.00	0.00	0.00	3.01
2153	2718	0.896226	GGACAGACTAAGGGCGAGTT	59.104	55.000	0.00	0.00	0.00	3.01
2154	2719	1.313812	CGGACAGACTAAGGGCGAGT	61.314	60.000	0.00	0.00	0.00	4.18
2155	2720	1.433879	CGGACAGACTAAGGGCGAG	59.566	63.158	0.00	0.00	0.00	5.03
2156	2721	2.707849	GCGGACAGACTAAGGGCGA	61.708	63.158	0.00	0.00	0.00	5.54
2157	2722	2.202756	GCGGACAGACTAAGGGCG	60.203	66.667	0.00	0.00	0.00	6.13
2158	2723	0.460459	GAAGCGGACAGACTAAGGGC	60.460	60.000	0.00	0.00	0.00	5.19
2159	2724	0.895530	TGAAGCGGACAGACTAAGGG	59.104	55.000	0.00	0.00	0.00	3.95
2160	2725	2.737252	GTTTGAAGCGGACAGACTAAGG	59.263	50.000	0.00	0.00	0.00	2.69
2161	2726	3.430218	CAGTTTGAAGCGGACAGACTAAG	59.570	47.826	0.00	0.00	32.76	2.18
2162	2727	3.181469	ACAGTTTGAAGCGGACAGACTAA	60.181	43.478	0.00	0.00	32.76	2.24
2163	2728	2.364324	ACAGTTTGAAGCGGACAGACTA	59.636	45.455	0.00	0.00	32.76	2.59
2164	2729	1.139058	ACAGTTTGAAGCGGACAGACT	59.861	47.619	0.00	0.00	33.96	3.24
2165	2730	1.583054	ACAGTTTGAAGCGGACAGAC	58.417	50.000	0.00	0.00	0.00	3.51
2166	2731	2.325583	AACAGTTTGAAGCGGACAGA	57.674	45.000	0.00	0.00	0.00	3.41
2167	2732	3.108144	CAAAACAGTTTGAAGCGGACAG	58.892	45.455	0.00	0.00	45.99	3.51
2168	2733	2.159310	CCAAAACAGTTTGAAGCGGACA	60.159	45.455	0.00	0.00	45.99	4.02
2169	2734	2.459934	CCAAAACAGTTTGAAGCGGAC	58.540	47.619	0.00	0.00	45.99	4.79
2170	2735	1.407258	CCCAAAACAGTTTGAAGCGGA	59.593	47.619	0.00	0.00	45.99	5.54
2171	2736	1.851658	CCCAAAACAGTTTGAAGCGG	58.148	50.000	0.00	0.00	45.99	5.52
2172	2737	1.208259	GCCCAAAACAGTTTGAAGCG	58.792	50.000	0.00	0.00	45.99	4.68
2173	2738	1.208259	CGCCCAAAACAGTTTGAAGC	58.792	50.000	0.00	2.11	45.99	3.86
2174	2739	2.577449	ACGCCCAAAACAGTTTGAAG	57.423	45.000	0.00	0.00	45.99	3.02
2175	2740	3.381908	ACATACGCCCAAAACAGTTTGAA	59.618	39.130	0.00	0.00	45.99	2.69
2176	2741	2.952978	ACATACGCCCAAAACAGTTTGA	59.047	40.909	0.00	0.00	45.99	2.69
2177	2742	3.049206	CACATACGCCCAAAACAGTTTG	58.951	45.455	0.00	0.00	43.26	2.93
2178	2743	2.952978	TCACATACGCCCAAAACAGTTT	59.047	40.909	0.00	0.00	0.00	2.66
2179	2744	2.577700	TCACATACGCCCAAAACAGTT	58.422	42.857	0.00	0.00	0.00	3.16
2180	2745	2.264005	TCACATACGCCCAAAACAGT	57.736	45.000	0.00	0.00	0.00	3.55
2181	2746	3.634568	TTTCACATACGCCCAAAACAG	57.365	42.857	0.00	0.00	0.00	3.16
2182	2747	3.319405	ACATTTCACATACGCCCAAAACA	59.681	39.130	0.00	0.00	0.00	2.83
2183	2748	3.672867	CACATTTCACATACGCCCAAAAC	59.327	43.478	0.00	0.00	0.00	2.43
2184	2749	3.319405	ACACATTTCACATACGCCCAAAA	59.681	39.130	0.00	0.00	0.00	2.44
2242	2808	4.003648	GCCGCTGGCTGATATAATAAACT	58.996	43.478	11.61	0.00	46.69	2.66
2263	2829	1.232621	AAAAAGGACTACACCGCCGC	61.233	55.000	0.00	0.00	34.73	6.53
2355	2953	5.045213	TCTCAACTGAGATCTAGTCACTCCT	60.045	44.000	5.29	0.00	45.48	3.69
2369	2967	5.713792	TGGTTAAGTCTCTCTCAACTGAG	57.286	43.478	0.00	0.00	43.36	3.35
2389	2987	3.126831	GTGTCACTTGACTGAGACTTGG	58.873	50.000	10.63	0.00	44.99	3.61
2448	3046	6.711277	TCTTGCATGGAGAGTTATGTAAAGT	58.289	36.000	0.00	0.00	30.46	2.66
2449	3047	7.714377	AGATCTTGCATGGAGAGTTATGTAAAG	59.286	37.037	0.00	0.00	30.46	1.85
2456	3054	5.364735	TCATGAGATCTTGCATGGAGAGTTA	59.635	40.000	19.14	1.71	41.60	2.24
2459	3057	4.338379	TCATGAGATCTTGCATGGAGAG	57.662	45.455	19.14	0.35	41.60	3.20
2512	3110	5.221263	GGGATTGCTAATTCTCAGTCGACTA	60.221	44.000	19.57	2.37	0.00	2.59
2515	3113	3.490933	CGGGATTGCTAATTCTCAGTCGA	60.491	47.826	0.00	0.00	0.00	4.20
2553	3151	6.882656	ACTCATTTCAGTGCATGTAGTCTAT	58.117	36.000	0.00	0.00	0.00	1.98
2563	3183	4.319477	GCGTCTTTAACTCATTTCAGTGCA	60.319	41.667	0.00	0.00	0.00	4.57
2564	3184	4.151798	GCGTCTTTAACTCATTTCAGTGC	58.848	43.478	0.00	0.00	0.00	4.40
2572	3192	2.076863	GGCAGTGCGTCTTTAACTCAT	58.923	47.619	9.45	0.00	0.00	2.90
2576	3196	0.163146	GACGGCAGTGCGTCTTTAAC	59.837	55.000	23.73	3.84	32.57	2.01
2577	3197	0.249531	TGACGGCAGTGCGTCTTTAA	60.250	50.000	27.85	13.93	34.86	1.52
2578	3198	0.037697	ATGACGGCAGTGCGTCTTTA	60.038	50.000	27.85	16.15	34.86	1.85
2579	3199	1.291877	GATGACGGCAGTGCGTCTTT	61.292	55.000	27.85	19.98	34.86	2.52
2619	3239	4.048504	GTCTACAAAAACATGTTGTGCCC	58.951	43.478	12.82	0.00	39.50	5.36
2620	3240	4.677584	TGTCTACAAAAACATGTTGTGCC	58.322	39.130	12.82	4.09	39.50	5.01
2621	3241	5.339990	ACTGTCTACAAAAACATGTTGTGC	58.660	37.500	12.82	3.13	39.50	4.57
2633	3253	2.637382	TGGCATCCTGACTGTCTACAAA	59.363	45.455	9.51	0.00	0.00	2.83
2635	3255	1.937191	TGGCATCCTGACTGTCTACA	58.063	50.000	9.51	0.00	0.00	2.74
2639	3259	0.176680	ACGATGGCATCCTGACTGTC	59.823	55.000	21.20	0.00	0.00	3.51
2645	3265	0.105593	ACTAGCACGATGGCATCCTG	59.894	55.000	21.20	19.70	35.83	3.86
2646	3266	0.390860	GACTAGCACGATGGCATCCT	59.609	55.000	21.20	14.66	35.83	3.24
2650	3270	3.259064	GTTTTAGACTAGCACGATGGCA	58.741	45.455	0.00	0.00	35.83	4.92
2652	3272	3.617263	GGTGTTTTAGACTAGCACGATGG	59.383	47.826	0.00	0.00	0.00	3.51
2654	3274	4.530710	TGGTGTTTTAGACTAGCACGAT	57.469	40.909	0.00	0.00	0.00	3.73
2663	3283	4.553938	CGGTGTTGTCATGGTGTTTTAGAC	60.554	45.833	0.00	0.00	0.00	2.59
2677	3297	2.022129	CTCCTCGTGCGGTGTTGTC	61.022	63.158	0.00	0.00	0.00	3.18
2679	3299	2.022129	GACTCCTCGTGCGGTGTTG	61.022	63.158	0.00	0.00	31.39	3.33
2680	3300	2.338984	GACTCCTCGTGCGGTGTT	59.661	61.111	0.00	0.00	31.39	3.32
2687	3307	2.430921	GCACACCGACTCCTCGTG	60.431	66.667	0.00	0.00	38.32	4.35
2688	3308	2.910479	TGCACACCGACTCCTCGT	60.910	61.111	0.00	0.00	38.32	4.18
2720	3340	0.181350	ACCATGGGCAAGCTACTAGC	59.819	55.000	18.09	0.00	42.84	3.42
2721	3341	2.292267	CAACCATGGGCAAGCTACTAG	58.708	52.381	18.09	0.00	0.00	2.57
2732	3354	3.192422	TGTTTTAGAATCGCAACCATGGG	59.808	43.478	18.09	0.00	40.66	4.00
2737	3359	3.662186	CACGTTGTTTTAGAATCGCAACC	59.338	43.478	0.00	0.00	36.91	3.77
2741	3363	3.153735	GAGCACGTTGTTTTAGAATCGC	58.846	45.455	0.00	0.00	0.00	4.58
2742	3364	4.383774	TGAGCACGTTGTTTTAGAATCG	57.616	40.909	0.00	0.00	0.00	3.34
2743	3365	6.603095	AGAATGAGCACGTTGTTTTAGAATC	58.397	36.000	0.00	0.00	0.00	2.52
2745	3367	6.037720	TCAAGAATGAGCACGTTGTTTTAGAA	59.962	34.615	0.00	0.00	0.00	2.10
2779	3401	7.697352	TTTGCACAAGACAAAATGTTGATAG	57.303	32.000	1.62	0.00	38.20	2.08
2780	3402	8.549548	CAATTTGCACAAGACAAAATGTTGATA	58.450	29.630	1.62	0.00	40.19	2.15
2786	3408	6.592798	ACTCAATTTGCACAAGACAAAATG	57.407	33.333	0.00	0.00	40.19	2.32
2898	3551	5.649395	TCAAATTGCACAAAACAAAATGGGA	59.351	32.000	0.00	0.00	0.00	4.37
2910	3563	4.082300	ACCATCGCTATTCAAATTGCACAA	60.082	37.500	9.26	0.00	37.05	3.33
2912	3565	4.032703	ACCATCGCTATTCAAATTGCAC	57.967	40.909	9.26	0.00	37.05	4.57
2913	3566	4.881273	AGTACCATCGCTATTCAAATTGCA	59.119	37.500	9.26	0.00	37.05	4.08
2931	3584	7.542025	TCTACGAGAGAAAAATGGTAAGTACC	58.458	38.462	0.17	0.17	46.62	3.34
2963	3616	7.334171	GCAATTTACAGTTGGAAGCCAAATTAT	59.666	33.333	0.00	0.00	45.73	1.28
2970	3623	3.658757	TGCAATTTACAGTTGGAAGCC	57.341	42.857	0.00	0.00	0.00	4.35
3014	3667	9.733219	CAACATGCATTTTTCCTTTATTTGTTT	57.267	25.926	0.00	0.00	0.00	2.83
3016	3669	7.718753	TCCAACATGCATTTTTCCTTTATTTGT	59.281	29.630	0.00	0.00	0.00	2.83
3032	3685	5.218885	CGTTTCTGTAAAATCCAACATGCA	58.781	37.500	0.00	0.00	0.00	3.96
3033	3686	5.219633	ACGTTTCTGTAAAATCCAACATGC	58.780	37.500	0.00	0.00	0.00	4.06
3036	3693	5.049267	GGCTACGTTTCTGTAAAATCCAACA	60.049	40.000	0.00	0.00	0.00	3.33
3042	3699	7.485810	ACAAAAAGGCTACGTTTCTGTAAAAT	58.514	30.769	0.00	0.00	0.00	1.82
3074	3731	1.014352	CGTTATGGCCCTTTTCCTCG	58.986	55.000	0.00	0.00	0.00	4.63
3092	3763	3.348236	GCCTGCTCATATTGGCCG	58.652	61.111	0.00	0.00	39.49	6.13
3119	3790	6.162777	TGTTTGTTTTGGTCTCCTTTTTGAG	58.837	36.000	0.00	0.00	0.00	3.02
3120	3791	6.102897	TGTTTGTTTTGGTCTCCTTTTTGA	57.897	33.333	0.00	0.00	0.00	2.69
3121	3792	6.793492	TTGTTTGTTTTGGTCTCCTTTTTG	57.207	33.333	0.00	0.00	0.00	2.44
3124	3798	4.926832	CGTTTGTTTGTTTTGGTCTCCTTT	59.073	37.500	0.00	0.00	0.00	3.11
3158	3836	9.705290	ATAAATAAAAACGGAAAGTGAATTGCT	57.295	25.926	0.00	0.00	0.00	3.91
3350	4080	6.326375	TGTTTGTGCAATTTAAGAAGTCGTT	58.674	32.000	0.00	0.00	0.00	3.85
3360	4093	8.668353	TGCAAGTTAAAATGTTTGTGCAATTTA	58.332	25.926	0.00	0.00	37.78	1.40
3364	4097	6.486253	TTGCAAGTTAAAATGTTTGTGCAA	57.514	29.167	0.00	3.78	45.55	4.08
3381	4114	6.734137	TCACACCTTTTATAGTGTTTGCAAG	58.266	36.000	0.00	0.00	44.65	4.01
3382	4115	6.701145	TCACACCTTTTATAGTGTTTGCAA	57.299	33.333	0.00	0.00	44.65	4.08
3513	4771	3.251004	GCGAGAAAGTTCAACAGGAATGT	59.749	43.478	0.00	0.00	37.93	2.71
3548	4806	3.650942	TCTACCAGTTCAACAGGGATTGT	59.349	43.478	3.69	0.00	43.45	2.71
3549	4807	4.286297	TCTACCAGTTCAACAGGGATTG	57.714	45.455	3.69	0.00	0.00	2.67
3550	4808	4.993705	TTCTACCAGTTCAACAGGGATT	57.006	40.909	3.69	0.00	0.00	3.01
3551	4809	6.831664	ATATTCTACCAGTTCAACAGGGAT	57.168	37.500	3.69	0.00	0.00	3.85
3552	4810	6.636454	AATATTCTACCAGTTCAACAGGGA	57.364	37.500	3.69	0.00	0.00	4.20
3553	4811	8.840321	CATAAATATTCTACCAGTTCAACAGGG	58.160	37.037	3.69	0.14	0.00	4.45
3586	4844	4.782019	ATTAATTGTCCGTGTGTTGCAT	57.218	36.364	0.00	0.00	0.00	3.96
3691	4951	3.589495	TGCATGGCGAAATTTCAATGA	57.411	38.095	21.07	9.66	0.00	2.57
3778	5155	5.876357	TCTAAGTTATTCCTGTTTGTGGCT	58.124	37.500	0.00	0.00	0.00	4.75
3779	5156	6.569179	TTCTAAGTTATTCCTGTTTGTGGC	57.431	37.500	0.00	0.00	0.00	5.01
3780	5157	7.542130	GCATTTCTAAGTTATTCCTGTTTGTGG	59.458	37.037	0.00	0.00	0.00	4.17
3781	5158	8.081633	TGCATTTCTAAGTTATTCCTGTTTGTG	58.918	33.333	0.00	0.00	0.00	3.33
3782	5159	8.177119	TGCATTTCTAAGTTATTCCTGTTTGT	57.823	30.769	0.00	0.00	0.00	2.83
3786	5163	9.632638	ACATATGCATTTCTAAGTTATTCCTGT	57.367	29.630	3.54	0.00	0.00	4.00
3831	5208	9.508642	CACATATGTTACTCCTCACTATAGAGA	57.491	37.037	5.37	2.89	37.87	3.10
3832	5209	9.290988	ACACATATGTTACTCCTCACTATAGAG	57.709	37.037	5.37	0.00	34.46	2.43
3833	5210	9.067986	CACACATATGTTACTCCTCACTATAGA	57.932	37.037	5.37	0.00	36.72	1.98
3834	5211	9.067986	TCACACATATGTTACTCCTCACTATAG	57.932	37.037	5.37	0.00	36.72	1.31
3835	5212	8.990163	TCACACATATGTTACTCCTCACTATA	57.010	34.615	5.37	0.00	36.72	1.31
3836	5213	7.898014	TCACACATATGTTACTCCTCACTAT	57.102	36.000	5.37	0.00	36.72	2.12
3837	5214	7.342026	ACATCACACATATGTTACTCCTCACTA	59.658	37.037	5.37	0.00	36.72	2.74
3838	5215	6.155221	ACATCACACATATGTTACTCCTCACT	59.845	38.462	5.37	0.00	36.72	3.41
3839	5216	6.341316	ACATCACACATATGTTACTCCTCAC	58.659	40.000	5.37	0.00	36.72	3.51
3840	5217	6.544928	ACATCACACATATGTTACTCCTCA	57.455	37.500	5.37	0.00	36.72	3.86
3841	5218	8.982685	CATTACATCACACATATGTTACTCCTC	58.017	37.037	5.37	0.00	36.72	3.71
3842	5219	7.442364	GCATTACATCACACATATGTTACTCCT	59.558	37.037	5.37	0.00	36.72	3.69
3843	5220	7.226523	TGCATTACATCACACATATGTTACTCC	59.773	37.037	5.37	0.00	36.72	3.85
3844	5221	8.141835	TGCATTACATCACACATATGTTACTC	57.858	34.615	5.37	0.00	36.72	2.59
3845	5222	8.397906	GTTGCATTACATCACACATATGTTACT	58.602	33.333	5.37	0.00	36.72	2.24
3846	5223	8.180920	TGTTGCATTACATCACACATATGTTAC	58.819	33.333	5.37	0.00	36.72	2.50
3847	5224	8.180920	GTGTTGCATTACATCACACATATGTTA	58.819	33.333	5.37	0.00	44.84	2.41
3848	5225	7.028962	GTGTTGCATTACATCACACATATGTT	58.971	34.615	5.37	0.00	44.84	2.71
3849	5226	6.375174	AGTGTTGCATTACATCACACATATGT	59.625	34.615	15.74	1.41	46.91	2.29
3850	5227	6.788243	AGTGTTGCATTACATCACACATATG	58.212	36.000	15.74	0.00	46.91	1.78
3851	5228	7.121020	TGAAGTGTTGCATTACATCACACATAT	59.879	33.333	15.74	4.04	46.91	1.78
3852	5229	6.429385	TGAAGTGTTGCATTACATCACACATA	59.571	34.615	15.74	1.77	46.91	2.29
3853	5230	5.241285	TGAAGTGTTGCATTACATCACACAT	59.759	36.000	15.74	5.81	46.91	3.21
3854	5231	4.578105	TGAAGTGTTGCATTACATCACACA	59.422	37.500	15.74	0.00	46.91	3.72
3855	5232	5.107109	TGAAGTGTTGCATTACATCACAC	57.893	39.130	7.36	7.36	46.91	3.82
3856	5233	5.963176	ATGAAGTGTTGCATTACATCACA	57.037	34.783	9.88	4.67	46.91	3.58
3857	5234	8.915871	ATAAATGAAGTGTTGCATTACATCAC	57.084	30.769	9.88	0.00	45.52	3.06
3861	5238	9.019656	ACCTAATAAATGAAGTGTTGCATTACA	57.980	29.630	0.00	0.00	33.87	2.41
3862	5239	9.503427	GACCTAATAAATGAAGTGTTGCATTAC	57.497	33.333	0.00	0.00	33.87	1.89
3863	5240	8.394877	CGACCTAATAAATGAAGTGTTGCATTA	58.605	33.333	0.00	0.00	33.87	1.90
3864	5241	7.094377	ACGACCTAATAAATGAAGTGTTGCATT	60.094	33.333	0.00	0.00	36.35	3.56
3865	5242	6.374333	ACGACCTAATAAATGAAGTGTTGCAT	59.626	34.615	0.00	0.00	0.00	3.96
3866	5243	5.703592	ACGACCTAATAAATGAAGTGTTGCA	59.296	36.000	0.00	0.00	0.00	4.08
3867	5244	6.178239	ACGACCTAATAAATGAAGTGTTGC	57.822	37.500	0.00	0.00	0.00	4.17
3868	5245	8.592998	GTCTACGACCTAATAAATGAAGTGTTG	58.407	37.037	0.00	0.00	0.00	3.33
3869	5246	8.529476	AGTCTACGACCTAATAAATGAAGTGTT	58.471	33.333	0.00	0.00	32.18	3.32
3870	5247	8.064336	AGTCTACGACCTAATAAATGAAGTGT	57.936	34.615	0.00	0.00	32.18	3.55
3871	5248	8.188799	TGAGTCTACGACCTAATAAATGAAGTG	58.811	37.037	0.00	0.00	32.18	3.16
3872	5249	8.289939	TGAGTCTACGACCTAATAAATGAAGT	57.710	34.615	0.00	0.00	32.18	3.01
3873	5250	9.400638	GATGAGTCTACGACCTAATAAATGAAG	57.599	37.037	0.00	0.00	32.18	3.02
3874	5251	9.132923	AGATGAGTCTACGACCTAATAAATGAA	57.867	33.333	0.00	0.00	32.18	2.57
3875	5252	8.693120	AGATGAGTCTACGACCTAATAAATGA	57.307	34.615	0.00	0.00	32.18	2.57
3876	5253	9.186323	CAAGATGAGTCTACGACCTAATAAATG	57.814	37.037	0.00	0.00	33.30	2.32
3877	5254	8.915036	ACAAGATGAGTCTACGACCTAATAAAT	58.085	33.333	0.00	0.00	33.30	1.40
3878	5255	8.289939	ACAAGATGAGTCTACGACCTAATAAA	57.710	34.615	0.00	0.00	33.30	1.40
3879	5256	7.774157	AGACAAGATGAGTCTACGACCTAATAA	59.226	37.037	0.00	0.00	44.10	1.40
3880	5257	7.281098	AGACAAGATGAGTCTACGACCTAATA	58.719	38.462	0.00	0.00	44.10	0.98
3881	5258	6.123651	AGACAAGATGAGTCTACGACCTAAT	58.876	40.000	0.00	0.00	44.10	1.73
3882	5259	5.498393	AGACAAGATGAGTCTACGACCTAA	58.502	41.667	0.00	0.00	44.10	2.69
3883	5260	5.100344	AGACAAGATGAGTCTACGACCTA	57.900	43.478	0.00	0.00	44.10	3.08
3884	5261	3.958018	AGACAAGATGAGTCTACGACCT	58.042	45.455	0.00	0.00	44.10	3.85
3885	5262	4.156190	TCAAGACAAGATGAGTCTACGACC	59.844	45.833	0.00	0.00	45.11	4.79
3886	5263	5.298197	TCAAGACAAGATGAGTCTACGAC	57.702	43.478	0.00	0.00	45.11	4.34
3887	5264	7.283354	ACATATCAAGACAAGATGAGTCTACGA	59.717	37.037	0.00	0.00	45.11	3.43
3888	5265	7.378194	CACATATCAAGACAAGATGAGTCTACG	59.622	40.741	0.00	0.00	45.11	3.51
3889	5266	8.194104	ACACATATCAAGACAAGATGAGTCTAC	58.806	37.037	0.00	0.00	45.11	2.59
3890	5267	8.193438	CACACATATCAAGACAAGATGAGTCTA	58.807	37.037	0.00	0.00	45.11	2.59
3892	5269	7.038048	TCACACATATCAAGACAAGATGAGTC	58.962	38.462	0.00	0.00	36.26	3.36
3893	5270	6.939622	TCACACATATCAAGACAAGATGAGT	58.060	36.000	0.00	0.00	0.00	3.41
3894	5271	7.494952	ACATCACACATATCAAGACAAGATGAG	59.505	37.037	0.00	0.00	34.73	2.90
3895	5272	7.333323	ACATCACACATATCAAGACAAGATGA	58.667	34.615	0.00	0.00	34.73	2.92
3896	5273	7.549615	ACATCACACATATCAAGACAAGATG	57.450	36.000	0.00	0.00	36.24	2.90
3897	5274	9.102757	GTAACATCACACATATCAAGACAAGAT	57.897	33.333	0.00	0.00	0.00	2.40
3898	5275	8.314021	AGTAACATCACACATATCAAGACAAGA	58.686	33.333	0.00	0.00	0.00	3.02
3899	5276	8.484641	AGTAACATCACACATATCAAGACAAG	57.515	34.615	0.00	0.00	0.00	3.16
3900	5277	8.846943	AAGTAACATCACACATATCAAGACAA	57.153	30.769	0.00	0.00	0.00	3.18
3947	5324	5.009610	TGAAGAAAAAGAGGCATGTGGTAAC	59.990	40.000	0.00	0.00	0.00	2.50
3948	5325	5.136828	TGAAGAAAAAGAGGCATGTGGTAA	58.863	37.500	0.00	0.00	0.00	2.85
3949	5326	4.724399	TGAAGAAAAAGAGGCATGTGGTA	58.276	39.130	0.00	0.00	0.00	3.25
3950	5327	3.565307	TGAAGAAAAAGAGGCATGTGGT	58.435	40.909	0.00	0.00	0.00	4.16
3951	5328	4.796038	ATGAAGAAAAAGAGGCATGTGG	57.204	40.909	0.00	0.00	0.00	4.17
3952	5329	8.767478	AATAAATGAAGAAAAAGAGGCATGTG	57.233	30.769	0.00	0.00	0.00	3.21
4011	5388	9.560860	TGGGAGTAACATAGATGGTAATATCAT	57.439	33.333	0.00	0.00	30.66	2.45
4012	5389	8.966155	TGGGAGTAACATAGATGGTAATATCA	57.034	34.615	0.00	0.00	30.66	2.15
4014	5391	8.696374	CGATGGGAGTAACATAGATGGTAATAT	58.304	37.037	0.00	0.00	30.66	1.28
4015	5392	7.672660	ACGATGGGAGTAACATAGATGGTAATA	59.327	37.037	0.00	0.00	30.66	0.98
4016	5393	6.497259	ACGATGGGAGTAACATAGATGGTAAT	59.503	38.462	0.00	0.00	30.66	1.89
4017	5394	5.836898	ACGATGGGAGTAACATAGATGGTAA	59.163	40.000	0.00	0.00	30.66	2.85
4018	5395	5.391256	ACGATGGGAGTAACATAGATGGTA	58.609	41.667	0.00	0.00	0.00	3.25
4019	5396	4.223953	ACGATGGGAGTAACATAGATGGT	58.776	43.478	0.00	0.00	0.00	3.55
4020	5397	4.873746	ACGATGGGAGTAACATAGATGG	57.126	45.455	0.00	0.00	0.00	3.51
4021	5398	5.477291	ACCTACGATGGGAGTAACATAGATG	59.523	44.000	0.00	0.00	0.00	2.90
4022	5399	5.642165	ACCTACGATGGGAGTAACATAGAT	58.358	41.667	0.00	0.00	0.00	1.98
4023	5400	5.057843	ACCTACGATGGGAGTAACATAGA	57.942	43.478	0.00	0.00	0.00	1.98
4024	5401	6.497785	CTACCTACGATGGGAGTAACATAG	57.502	45.833	0.00	0.00	33.37	2.23
4032	5409	4.696402	GTCTCATACTACCTACGATGGGAG	59.304	50.000	8.70	8.70	43.67	4.30
4033	5410	4.350225	AGTCTCATACTACCTACGATGGGA	59.650	45.833	0.00	0.00	36.36	4.37
4034	5411	4.456222	CAGTCTCATACTACCTACGATGGG	59.544	50.000	0.00	0.00	35.76	4.00
4035	5412	4.083217	GCAGTCTCATACTACCTACGATGG	60.083	50.000	0.00	0.00	35.76	3.51
4036	5413	4.757657	AGCAGTCTCATACTACCTACGATG	59.242	45.833	0.00	0.00	35.76	3.84
4037	5414	4.975631	AGCAGTCTCATACTACCTACGAT	58.024	43.478	0.00	0.00	35.76	3.73
4038	5415	4.418973	AGCAGTCTCATACTACCTACGA	57.581	45.455	0.00	0.00	35.76	3.43
4039	5416	5.701750	ACATAGCAGTCTCATACTACCTACG	59.298	44.000	0.00	0.00	35.76	3.51
4040	5417	7.513371	AACATAGCAGTCTCATACTACCTAC	57.487	40.000	0.00	0.00	35.76	3.18
4041	5418	8.534954	AAAACATAGCAGTCTCATACTACCTA	57.465	34.615	0.00	0.00	35.76	3.08
4042	5419	7.425224	AAAACATAGCAGTCTCATACTACCT	57.575	36.000	0.00	0.00	35.76	3.08
4043	5420	7.224949	GGAAAAACATAGCAGTCTCATACTACC	59.775	40.741	0.00	0.00	35.76	3.18
4044	5421	7.043325	CGGAAAAACATAGCAGTCTCATACTAC	60.043	40.741	0.00	0.00	35.76	2.73
4045	5422	6.978659	CGGAAAAACATAGCAGTCTCATACTA	59.021	38.462	0.00	0.00	35.76	1.82
4046	5423	5.812642	CGGAAAAACATAGCAGTCTCATACT	59.187	40.000	0.00	0.00	39.81	2.12
4047	5424	5.581085	ACGGAAAAACATAGCAGTCTCATAC	59.419	40.000	0.00	0.00	0.00	2.39
4051	5428	3.746492	ACACGGAAAAACATAGCAGTCTC	59.254	43.478	0.00	0.00	0.00	3.36
4060	5437	7.870445	AGTTTATTATTGCACACGGAAAAACAT	59.130	29.630	0.00	0.00	0.00	2.71
4184	5590	0.833287	GCAAGAGGTCATCTGGGCTA	59.167	55.000	4.65	0.00	38.67	3.93
4226	5632	0.609957	TTCGGTCGAGAGCCACCTTA	60.610	55.000	0.00	0.00	0.00	2.69
4228	5634	1.906824	TTTCGGTCGAGAGCCACCT	60.907	57.895	0.00	0.00	0.00	4.00
4234	5640	0.728466	GTCCACGTTTCGGTCGAGAG	60.728	60.000	0.00	0.00	0.00	3.20
4257	5663	1.609320	GGAGAGGTTGTTGAGGTCTGC	60.609	57.143	0.00	0.00	0.00	4.26
4340	5746	0.315251	CACAGTCCTCAGCGTTCTCA	59.685	55.000	0.00	0.00	0.00	3.27
4349	5755	2.867855	GCCGACCACACAGTCCTCA	61.868	63.158	0.00	0.00	32.91	3.86
4496	5903	2.264794	CCCTTGAAGTCGACCCCG	59.735	66.667	13.01	0.00	37.07	5.73
4606	6013	3.936772	TTGAACCCATGGGCGAGCC	62.937	63.158	31.73	15.16	39.32	4.70
4703	6110	4.459089	GGCACGACCCAGAGCCTC	62.459	72.222	0.00	0.00	43.19	4.70
4763	6171	1.709147	GACATCATGTCTGGCACGCC	61.709	60.000	10.81	0.00	43.73	5.68
4817	6225	2.818751	TCAAACACCTTCACACCCTT	57.181	45.000	0.00	0.00	0.00	3.95
4866	6274	4.772886	ACACGAAAGGGGAAATAGCTAT	57.227	40.909	0.00	0.00	40.46	2.97
4883	6292	7.982371	ACGAAACTAGGAAATATCTAACACG	57.018	36.000	0.00	0.00	0.00	4.49
4902	6311	3.369756	GGTGCGATCTTGTATGAACGAAA	59.630	43.478	0.00	0.00	34.83	3.46
4909	6318	3.685139	ATAGGGGTGCGATCTTGTATG	57.315	47.619	0.00	0.00	0.00	2.39
4911	6320	5.566032	CGATTTATAGGGGTGCGATCTTGTA	60.566	44.000	0.00	0.00	0.00	2.41
4937	6346	1.164411	CTATTCCACGTGCAAGGCAA	58.836	50.000	10.91	0.00	41.47	4.52
4962	6371	0.179032	TCCACGATGCCAACAACAGT	60.179	50.000	0.00	0.00	0.00	3.55
4964	6373	1.514678	GCTCCACGATGCCAACAACA	61.515	55.000	0.00	0.00	0.00	3.33
4970	6379	2.046988	CACAGCTCCACGATGCCA	60.047	61.111	0.00	0.00	30.42	4.92
4986	6395	0.682852	AAAGGAACGATCGTGACCCA	59.317	50.000	28.81	0.00	0.00	4.51
5029	6438	2.160721	TAGGGGGAGCACTGAAGTAG	57.839	55.000	0.00	0.00	0.00	2.57
5031	6440	0.984995	GTTAGGGGGAGCACTGAAGT	59.015	55.000	0.00	0.00	0.00	3.01
5114	6547	0.608035	CGTGTTATGTGGGGCTTGGT	60.608	55.000	0.00	0.00	0.00	3.67
5220	6670	2.101415	TGGAGCTACGTGATTGATGGAG	59.899	50.000	0.00	0.00	0.00	3.86
5246	6696	2.202987	GATGGAGGAGCTGCGTGG	60.203	66.667	0.00	0.00	0.00	4.94
5311	6761	4.579127	TCTCGGATGAGATCGCCA	57.421	55.556	0.00	0.00	46.25	5.69
5346	6796	2.579201	CGACCGCTGGAGGTTCAT	59.421	61.111	1.50	0.00	46.09	2.57
5360	6810	1.664965	GGGATGCGATACCTGCGAC	60.665	63.158	0.00	0.00	34.24	5.19
5370	6820	0.327924	ACAAATGAGTGGGGATGCGA	59.672	50.000	0.00	0.00	0.00	5.10
5379	6829	2.096069	CCACGAGCAAGACAAATGAGTG	60.096	50.000	0.00	0.00	0.00	3.51
5380	6830	2.146342	CCACGAGCAAGACAAATGAGT	58.854	47.619	0.00	0.00	0.00	3.41
5381	6831	1.135859	GCCACGAGCAAGACAAATGAG	60.136	52.381	0.00	0.00	42.97	2.90
5480	6935	1.078497	AACAAGATCCGCGATGGCA	60.078	52.632	8.23	0.00	39.92	4.92
5489	6944	3.873952	GCATCACTACCAGAACAAGATCC	59.126	47.826	0.00	0.00	0.00	3.36
5508	6963	2.923655	CACTTTGTATCACGACGAGCAT	59.076	45.455	0.00	0.00	0.00	3.79
5538	6995	2.224548	ACAGAAGAAACCCGCTTTAGCT	60.225	45.455	0.00	0.00	39.32	3.32
5546	7003	1.900486	ACCCTAGACAGAAGAAACCCG	59.100	52.381	0.00	0.00	0.00	5.28
5588	7045	2.892914	CCGTCGTGCACACAACCA	60.893	61.111	18.64	0.00	0.00	3.67
5631	7089	2.561956	GCGCCGCCAGATACCTAGA	61.562	63.158	0.00	0.00	0.00	2.43
5734	7237	2.022129	CGGTCATCGGCGATAAGGC	61.022	63.158	23.53	12.74	42.76	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.