Multiple sequence alignment - TraesCS1D01G018300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G018300 chr1D 100.000 4270 0 0 1 4270 7922453 7918184 0.000000e+00 7886.0
1 TraesCS1D01G018300 chr1D 90.455 901 27 19 1 846 9310928 9310032 0.000000e+00 1133.0
2 TraesCS1D01G018300 chr1D 89.070 860 28 16 30 846 231458710 231459546 0.000000e+00 1007.0
3 TraesCS1D01G018300 chr1D 88.014 292 30 5 251 540 62156866 62157154 1.470000e-89 340.0
4 TraesCS1D01G018300 chr1D 96.512 86 3 0 2389 2474 7919970 7919885 4.450000e-30 143.0
5 TraesCS1D01G018300 chr1D 96.512 86 3 0 2484 2569 7920065 7919980 4.450000e-30 143.0
6 TraesCS1D01G018300 chr1D 100.000 33 0 0 3822 3854 391956268 391956300 1.280000e-05 62.1
7 TraesCS1D01G018300 chr1D 92.683 41 2 1 3813 3852 12225383 12225423 1.660000e-04 58.4
8 TraesCS1D01G018300 chr1D 92.683 41 2 1 3813 3852 54972910 54972950 1.660000e-04 58.4
9 TraesCS1D01G018300 chr1D 92.683 41 2 1 3813 3852 93124874 93124834 1.660000e-04 58.4
10 TraesCS1D01G018300 chr1D 100.000 31 0 0 3822 3852 216728406 216728436 1.660000e-04 58.4
11 TraesCS1D01G018300 chr1D 100.000 30 0 0 3822 3851 143254074 143254103 5.960000e-04 56.5
12 TraesCS1D01G018300 chr1D 100.000 30 0 0 3822 3851 442373793 442373822 5.960000e-04 56.5
13 TraesCS1D01G018300 chr1D 100.000 30 0 0 3823 3852 471593561 471593590 5.960000e-04 56.5
14 TraesCS1D01G018300 chr1D 92.308 39 2 1 3813 3850 479730167 479730205 2.000000e-03 54.7
15 TraesCS1D01G018300 chr1D 88.636 44 4 1 3810 3852 193514575 193514532 8.000000e-03 52.8
16 TraesCS1D01G018300 chr1B 91.854 1154 48 15 2563 3688 10112408 10111273 0.000000e+00 1568.0
17 TraesCS1D01G018300 chr1B 84.989 1399 122 47 1100 2482 10113750 10112424 0.000000e+00 1339.0
18 TraesCS1D01G018300 chr1B 86.783 628 42 21 252 847 33465258 33465876 0.000000e+00 662.0
19 TraesCS1D01G018300 chr1B 79.613 569 75 30 3688 4240 10110049 10109506 1.880000e-98 370.0
20 TraesCS1D01G018300 chr1B 92.453 212 9 2 865 1069 10114270 10114059 3.230000e-76 296.0
21 TraesCS1D01G018300 chr1B 98.734 79 1 0 2404 2482 329007162 329007240 1.600000e-29 141.0
22 TraesCS1D01G018300 chr1B 92.405 79 5 1 2404 2482 76379968 76380045 1.260000e-20 111.0
23 TraesCS1D01G018300 chr1B 94.366 71 4 0 2499 2569 329007162 329007232 4.510000e-20 110.0
24 TraesCS1D01G018300 chr1B 88.679 53 4 2 3810 3860 346659523 346659471 3.560000e-06 63.9
25 TraesCS1D01G018300 chr3D 91.620 895 21 11 1 847 146189747 146190635 0.000000e+00 1188.0
26 TraesCS1D01G018300 chr3D 91.203 898 25 11 1 847 615091855 615092749 0.000000e+00 1171.0
27 TraesCS1D01G018300 chr3D 90.604 894 30 19 1 847 436041150 436042036 0.000000e+00 1136.0
28 TraesCS1D01G018300 chr3D 76.629 706 50 47 245 845 18788540 18787845 2.510000e-72 283.0
29 TraesCS1D01G018300 chr3D 91.667 48 3 1 3813 3859 27949912 27949865 9.910000e-07 65.8
30 TraesCS1D01G018300 chr3D 93.333 45 1 2 3810 3852 422472525 422472569 9.910000e-07 65.8
31 TraesCS1D01G018300 chr3D 93.182 44 2 1 3810 3852 85042403 85042446 3.560000e-06 63.9
32 TraesCS1D01G018300 chr6D 91.516 884 33 9 1 847 431025809 431024931 0.000000e+00 1179.0
33 TraesCS1D01G018300 chr6D 90.524 897 30 11 1 847 22060720 22059829 0.000000e+00 1134.0
34 TraesCS1D01G018300 chr6D 91.294 804 22 9 1 757 448411553 448410751 0.000000e+00 1053.0
35 TraesCS1D01G018300 chr6D 91.184 397 19 11 462 847 159340641 159341032 3.780000e-145 525.0
36 TraesCS1D01G018300 chr6D 95.238 42 1 1 3812 3852 438275700 438275659 9.910000e-07 65.8
37 TraesCS1D01G018300 chr6D 95.122 41 1 1 3813 3852 1963500 1963460 3.560000e-06 63.9
38 TraesCS1D01G018300 chr6D 95.122 41 1 1 3813 3852 470896437 470896477 3.560000e-06 63.9
39 TraesCS1D01G018300 chr6D 93.023 43 1 2 3810 3850 406201251 406201209 1.280000e-05 62.1
40 TraesCS1D01G018300 chr2D 91.397 895 24 10 1 846 537441051 537441941 0.000000e+00 1177.0
41 TraesCS1D01G018300 chr2D 86.486 296 27 9 249 540 450948870 450949156 3.210000e-81 313.0
42 TraesCS1D01G018300 chr7D 91.193 897 23 11 1 847 207205127 207206017 0.000000e+00 1168.0
43 TraesCS1D01G018300 chr7D 90.970 897 28 11 1 847 628444140 628445033 0.000000e+00 1158.0
44 TraesCS1D01G018300 chr7D 87.742 310 22 9 249 544 499719561 499719254 8.790000e-92 348.0
45 TraesCS1D01G018300 chr7D 88.768 276 29 1 2715 2990 169912473 169912746 1.900000e-88 337.0
46 TraesCS1D01G018300 chr7D 90.000 50 3 2 3812 3860 65615547 65615595 3.560000e-06 63.9
47 TraesCS1D01G018300 chr5D 90.486 925 28 13 1 869 486533775 486534695 0.000000e+00 1166.0
48 TraesCS1D01G018300 chr5D 88.082 730 23 16 1 667 480969924 480969196 0.000000e+00 808.0
49 TraesCS1D01G018300 chr5D 86.735 294 39 0 1144 1437 204871865 204871572 1.140000e-85 327.0
50 TraesCS1D01G018300 chr4D 88.688 884 33 23 1 846 366316385 366315531 0.000000e+00 1016.0
51 TraesCS1D01G018300 chr4D 83.898 590 42 36 1 544 410155750 410155168 8.190000e-142 514.0
52 TraesCS1D01G018300 chr4D 90.576 382 19 8 480 846 14973533 14973912 1.380000e-134 490.0
53 TraesCS1D01G018300 chr4D 91.497 294 25 0 1144 1437 87714575 87714868 5.140000e-109 405.0
54 TraesCS1D01G018300 chr4D 95.238 42 1 1 3812 3852 436953153 436953194 9.910000e-07 65.8
55 TraesCS1D01G018300 chr4D 95.122 41 1 1 3813 3852 69119777 69119817 3.560000e-06 63.9
56 TraesCS1D01G018300 chr4D 93.182 44 2 1 3810 3852 403409528 403409571 3.560000e-06 63.9
57 TraesCS1D01G018300 chr4D 92.857 42 2 1 3812 3852 379132065 379132024 4.610000e-05 60.2
58 TraesCS1D01G018300 chr4D 91.111 45 2 2 3810 3852 469605721 469605677 4.610000e-05 60.2
59 TraesCS1D01G018300 chr4D 90.909 44 3 1 3810 3852 101653305 101653262 1.660000e-04 58.4
60 TraesCS1D01G018300 chr1A 90.553 741 39 12 3066 3784 9587271 9586540 0.000000e+00 952.0
61 TraesCS1D01G018300 chr1A 91.709 591 25 14 865 1440 9589422 9588841 0.000000e+00 798.0
62 TraesCS1D01G018300 chr1A 83.333 528 42 16 2483 2972 9587815 9587296 3.030000e-121 446.0
63 TraesCS1D01G018300 chr1A 78.336 757 111 33 1595 2321 9588773 9588040 1.410000e-119 440.0
64 TraesCS1D01G018300 chr1A 86.857 175 13 8 3896 4069 9586454 9586289 2.030000e-43 187.0
65 TraesCS1D01G018300 chr1A 93.617 94 3 1 2389 2482 9587814 9587724 2.070000e-28 137.0
66 TraesCS1D01G018300 chr3B 82.090 670 54 36 249 867 9891160 9891814 2.940000e-141 512.0
67 TraesCS1D01G018300 chr3B 87.037 54 6 1 3810 3862 529803495 529803548 4.610000e-05 60.2
68 TraesCS1D01G018300 chr4A 92.517 294 22 0 1144 1437 500350027 500350320 5.100000e-114 422.0
69 TraesCS1D01G018300 chr4A 95.238 42 1 1 3812 3852 26746406 26746365 9.910000e-07 65.8
70 TraesCS1D01G018300 chr4A 95.238 42 1 1 3812 3852 26766236 26766195 9.910000e-07 65.8
71 TraesCS1D01G018300 chr4A 91.304 46 3 1 3808 3852 617962676 617962631 1.280000e-05 62.1
72 TraesCS1D01G018300 chr4B 92.177 294 23 0 1144 1437 124018179 124018472 2.380000e-112 416.0
73 TraesCS1D01G018300 chr4B 95.238 42 1 1 3812 3852 538963962 538964003 9.910000e-07 65.8
74 TraesCS1D01G018300 chr4B 95.122 41 1 1 3813 3852 417133588 417133628 3.560000e-06 63.9
75 TraesCS1D01G018300 chr6B 91.246 297 19 5 253 544 668973805 668974099 8.600000e-107 398.0
76 TraesCS1D01G018300 chr6B 89.761 293 25 5 253 544 450803935 450803647 1.880000e-98 370.0
77 TraesCS1D01G018300 chr6B 89.298 299 19 7 249 539 1976316 1976609 3.140000e-96 363.0
78 TraesCS1D01G018300 chr5B 83.784 407 35 20 1000 1400 11060994 11061375 1.460000e-94 357.0
79 TraesCS1D01G018300 chr5B 87.075 294 38 0 1144 1437 207577668 207577961 2.460000e-87 333.0
80 TraesCS1D01G018300 chr5B 93.182 44 1 2 3810 3852 615655222 615655180 3.560000e-06 63.9
81 TraesCS1D01G018300 chr5B 97.143 35 1 0 3825 3859 615607617 615607583 4.610000e-05 60.2
82 TraesCS1D01G018300 chr7B 86.769 325 33 7 2715 3039 135579804 135580118 1.890000e-93 353.0
83 TraesCS1D01G018300 chr7B 82.420 438 45 15 320 727 718843884 718843449 1.890000e-93 353.0
84 TraesCS1D01G018300 chr7B 93.671 79 4 1 2404 2482 413035838 413035761 2.700000e-22 117.0
85 TraesCS1D01G018300 chr7B 95.349 43 1 1 3811 3852 143179581 143179539 2.760000e-07 67.6
86 TraesCS1D01G018300 chr7B 93.333 45 2 1 3809 3852 324888872 324888916 9.910000e-07 65.8
87 TraesCS1D01G018300 chr7B 89.583 48 4 1 3803 3849 681618844 681618891 4.610000e-05 60.2
88 TraesCS1D01G018300 chr7A 89.209 278 26 3 2715 2990 172466473 172466748 1.140000e-90 344.0
89 TraesCS1D01G018300 chr7A 93.333 45 1 2 3810 3852 125469170 125469214 9.910000e-07 65.8
90 TraesCS1D01G018300 chr7A 88.462 52 4 2 3802 3852 55920924 55920874 1.280000e-05 62.1
91 TraesCS1D01G018300 chr5A 86.395 294 40 0 1144 1437 244450134 244449841 5.330000e-84 322.0
92 TraesCS1D01G018300 chr5A 93.333 45 1 2 3810 3852 406022927 406022971 9.910000e-07 65.8
93 TraesCS1D01G018300 chr3A 84.691 307 34 7 249 545 705884430 705884127 1.160000e-75 294.0
94 TraesCS1D01G018300 chr2B 97.468 79 2 0 2404 2482 127449771 127449693 7.450000e-28 135.0
95 TraesCS1D01G018300 chr2B 90.000 50 3 1 3805 3852 662578000 662577951 3.560000e-06 63.9
96 TraesCS1D01G018300 chr2A 93.506 77 4 1 2406 2482 752120404 752120479 3.490000e-21 113.0
97 TraesCS1D01G018300 chrUn 95.122 41 1 1 3813 3852 197752479 197752439 3.560000e-06 63.9
98 TraesCS1D01G018300 chrUn 94.595 37 1 1 3813 3848 94223202 94223238 5.960000e-04 56.5
99 TraesCS1D01G018300 chr6A 93.182 44 2 1 3809 3851 38475533 38475576 3.560000e-06 63.9
100 TraesCS1D01G018300 chr6A 89.583 48 4 1 3813 3859 610518793 610518840 4.610000e-05 60.2
101 TraesCS1D01G018300 chr6A 88.000 50 5 1 3804 3852 591435570 591435619 1.660000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G018300 chr1D 7918184 7922453 4269 True 2724.000000 7886 97.674667 1 4270 3 chr1D.!!$R4 4269
1 TraesCS1D01G018300 chr1D 9310032 9310928 896 True 1133.000000 1133 90.455000 1 846 1 chr1D.!!$R1 845
2 TraesCS1D01G018300 chr1D 231458710 231459546 836 False 1007.000000 1007 89.070000 30 846 1 chr1D.!!$F6 816
3 TraesCS1D01G018300 chr1B 10109506 10114270 4764 True 893.250000 1568 87.227250 865 4240 4 chr1B.!!$R2 3375
4 TraesCS1D01G018300 chr1B 33465258 33465876 618 False 662.000000 662 86.783000 252 847 1 chr1B.!!$F1 595
5 TraesCS1D01G018300 chr3D 146189747 146190635 888 False 1188.000000 1188 91.620000 1 847 1 chr3D.!!$F2 846
6 TraesCS1D01G018300 chr3D 615091855 615092749 894 False 1171.000000 1171 91.203000 1 847 1 chr3D.!!$F5 846
7 TraesCS1D01G018300 chr3D 436041150 436042036 886 False 1136.000000 1136 90.604000 1 847 1 chr3D.!!$F4 846
8 TraesCS1D01G018300 chr3D 18787845 18788540 695 True 283.000000 283 76.629000 245 845 1 chr3D.!!$R1 600
9 TraesCS1D01G018300 chr6D 431024931 431025809 878 True 1179.000000 1179 91.516000 1 847 1 chr6D.!!$R4 846
10 TraesCS1D01G018300 chr6D 22059829 22060720 891 True 1134.000000 1134 90.524000 1 847 1 chr6D.!!$R2 846
11 TraesCS1D01G018300 chr6D 448410751 448411553 802 True 1053.000000 1053 91.294000 1 757 1 chr6D.!!$R6 756
12 TraesCS1D01G018300 chr2D 537441051 537441941 890 False 1177.000000 1177 91.397000 1 846 1 chr2D.!!$F2 845
13 TraesCS1D01G018300 chr7D 207205127 207206017 890 False 1168.000000 1168 91.193000 1 847 1 chr7D.!!$F3 846
14 TraesCS1D01G018300 chr7D 628444140 628445033 893 False 1158.000000 1158 90.970000 1 847 1 chr7D.!!$F4 846
15 TraesCS1D01G018300 chr5D 486533775 486534695 920 False 1166.000000 1166 90.486000 1 869 1 chr5D.!!$F1 868
16 TraesCS1D01G018300 chr5D 480969196 480969924 728 True 808.000000 808 88.082000 1 667 1 chr5D.!!$R2 666
17 TraesCS1D01G018300 chr4D 366315531 366316385 854 True 1016.000000 1016 88.688000 1 846 1 chr4D.!!$R2 845
18 TraesCS1D01G018300 chr4D 410155168 410155750 582 True 514.000000 514 83.898000 1 544 1 chr4D.!!$R4 543
19 TraesCS1D01G018300 chr1A 9586289 9589422 3133 True 493.333333 952 87.400833 865 4069 6 chr1A.!!$R1 3204
20 TraesCS1D01G018300 chr3B 9891160 9891814 654 False 512.000000 512 82.090000 249 867 1 chr3B.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 1170 1.075600 CCCCTCTCTCTCCTCCACC 60.076 68.421 0.00 0.0 0.00 4.61 F
1721 2231 0.033796 AATGTATGCTGCCTGTGCCT 60.034 50.000 0.00 0.0 36.33 4.75 F
1722 2232 0.033796 ATGTATGCTGCCTGTGCCTT 60.034 50.000 0.00 0.0 36.33 4.35 F
1918 2443 0.250338 GCCAGATACGGGATTGGACC 60.250 60.000 5.83 0.0 32.34 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2424 0.250338 GGTCCAATCCCGTATCTGGC 60.250 60.0 0.00 0.0 0.00 4.85 R
3122 3862 0.621571 TGGCCCTGCAGAGAAGGTAT 60.622 55.0 17.39 0.0 32.45 2.73 R
3185 3925 1.750193 CAAGGGCTTCGGCAAAGATA 58.250 50.0 2.49 0.0 43.96 1.98 R
3785 5784 0.243095 AGTTCGTTCAGTCGCCCTAC 59.757 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
437 493 3.925630 AATGGGCACGCCAGGACTG 62.926 63.158 10.83 0.00 37.98 3.51
848 1070 2.690326 CGATTTTAGACGCCCCCAG 58.310 57.895 0.00 0.00 0.00 4.45
944 1170 1.075600 CCCCTCTCTCTCCTCCACC 60.076 68.421 0.00 0.00 0.00 4.61
947 1173 1.610327 CTCTCTCTCCTCCACCCGA 59.390 63.158 0.00 0.00 0.00 5.14
950 1176 2.361357 CTCTCCTCCACCCGACGT 60.361 66.667 0.00 0.00 0.00 4.34
1050 1279 1.685820 CCCCTTCTTCGGCTTCCTT 59.314 57.895 0.00 0.00 0.00 3.36
1129 1636 1.025812 ATCTGACCGACGGATCTGAC 58.974 55.000 23.38 0.35 40.19 3.51
1130 1637 1.062685 CTGACCGACGGATCTGACG 59.937 63.158 23.38 17.78 37.36 4.35
1135 1642 4.831307 GACGGATCTGACGCGCGT 62.831 66.667 38.52 38.52 34.00 6.01
1138 1645 4.796231 GGATCTGACGCGCGTGGT 62.796 66.667 42.90 24.44 0.00 4.16
1139 1646 3.545481 GATCTGACGCGCGTGGTG 61.545 66.667 42.90 27.55 0.00 4.17
1140 1647 4.357947 ATCTGACGCGCGTGGTGT 62.358 61.111 42.90 20.61 43.46 4.16
1245 1752 2.047274 AAGTCCATCGTGCCCGTG 60.047 61.111 0.00 0.00 35.01 4.94
1440 1947 2.028631 GCCGGCGTCAGGTATACC 59.971 66.667 12.58 14.54 0.00 2.73
1444 1953 1.201647 CCGGCGTCAGGTATACCTATG 59.798 57.143 24.15 16.62 46.65 2.23
1449 1958 4.099573 GGCGTCAGGTATACCTATGCATAT 59.900 45.833 28.92 7.22 46.65 1.78
1450 1959 5.282510 GCGTCAGGTATACCTATGCATATC 58.717 45.833 24.15 7.66 46.65 1.63
1457 1966 4.651201 ATACCTATGCATATCCCCCTCT 57.349 45.455 6.92 0.00 0.00 3.69
1459 1968 3.185455 ACCTATGCATATCCCCCTCTTC 58.815 50.000 6.92 0.00 0.00 2.87
1463 1972 1.061424 TGCATATCCCCCTCTTCCTGA 60.061 52.381 0.00 0.00 0.00 3.86
1467 1976 0.327867 ATCCCCCTCTTCCTGATGCA 60.328 55.000 0.00 0.00 0.00 3.96
1468 1977 1.225704 CCCCCTCTTCCTGATGCAC 59.774 63.158 0.00 0.00 0.00 4.57
1469 1978 1.153289 CCCCTCTTCCTGATGCACG 60.153 63.158 0.00 0.00 0.00 5.34
1470 1979 1.817099 CCCTCTTCCTGATGCACGC 60.817 63.158 0.00 0.00 0.00 5.34
1471 1980 1.078918 CCTCTTCCTGATGCACGCA 60.079 57.895 0.00 0.00 0.00 5.24
1472 1981 1.364626 CCTCTTCCTGATGCACGCAC 61.365 60.000 0.00 0.00 0.00 5.34
1473 1982 0.671472 CTCTTCCTGATGCACGCACA 60.671 55.000 0.00 0.00 0.00 4.57
1475 1984 1.227793 TTCCTGATGCACGCACACA 60.228 52.632 0.00 0.00 0.00 3.72
1476 1985 1.506309 TTCCTGATGCACGCACACAC 61.506 55.000 0.00 0.00 0.00 3.82
1477 1986 2.171701 CTGATGCACGCACACACG 59.828 61.111 0.00 0.00 39.50 4.49
1478 1987 3.916371 CTGATGCACGCACACACGC 62.916 63.158 0.00 0.00 36.19 5.34
1486 1995 2.964925 GCACACACGCGACCTGAA 60.965 61.111 15.93 0.00 0.00 3.02
1487 1996 2.943345 GCACACACGCGACCTGAAG 61.943 63.158 15.93 1.93 0.00 3.02
1488 1997 1.299850 CACACACGCGACCTGAAGA 60.300 57.895 15.93 0.00 0.00 2.87
1489 1998 1.007271 ACACACGCGACCTGAAGAG 60.007 57.895 15.93 0.00 0.00 2.85
1490 1999 1.285950 CACACGCGACCTGAAGAGA 59.714 57.895 15.93 0.00 0.00 3.10
1491 2000 0.109086 CACACGCGACCTGAAGAGAT 60.109 55.000 15.93 0.00 0.00 2.75
1492 2001 0.603569 ACACGCGACCTGAAGAGATT 59.396 50.000 15.93 0.00 0.00 2.40
1497 2006 2.003301 GCGACCTGAAGAGATTTGTCC 58.997 52.381 0.00 0.00 0.00 4.02
1499 2008 3.664107 CGACCTGAAGAGATTTGTCCAA 58.336 45.455 0.00 0.00 0.00 3.53
1520 2029 5.885352 CCAATGTGTGGGAGTATTTGATGTA 59.115 40.000 0.00 0.00 44.64 2.29
1537 2046 7.447374 TTGATGTAAATCTTGTGGTAGTTGG 57.553 36.000 0.00 0.00 0.00 3.77
1542 2051 6.932400 TGTAAATCTTGTGGTAGTTGGTACTG 59.068 38.462 0.00 0.00 35.78 2.74
1546 2055 5.991861 TCTTGTGGTAGTTGGTACTGAAAA 58.008 37.500 0.00 0.00 35.78 2.29
1547 2056 5.818857 TCTTGTGGTAGTTGGTACTGAAAAC 59.181 40.000 0.00 0.00 35.78 2.43
1548 2057 5.362105 TGTGGTAGTTGGTACTGAAAACT 57.638 39.130 0.00 1.40 37.82 2.66
1588 2097 1.141053 GGATGAGTTACAGCGGGGAAT 59.859 52.381 0.00 0.00 35.55 3.01
1592 2101 2.007608 GAGTTACAGCGGGGAATCAAC 58.992 52.381 0.00 0.00 0.00 3.18
1637 2147 1.076024 ACTTGGGACATGCTTGACCAT 59.924 47.619 19.64 6.08 39.16 3.55
1638 2148 2.173519 CTTGGGACATGCTTGACCATT 58.826 47.619 19.64 0.00 39.16 3.16
1640 2150 0.174162 GGGACATGCTTGACCATTGC 59.826 55.000 19.64 2.33 39.16 3.56
1641 2151 0.179156 GGACATGCTTGACCATTGCG 60.179 55.000 14.63 0.00 37.58 4.85
1642 2152 0.804364 GACATGCTTGACCATTGCGA 59.196 50.000 6.60 0.00 0.00 5.10
1658 2168 5.048504 CCATTGCGATTACATATGAAGCCTT 60.049 40.000 10.38 0.00 0.00 4.35
1661 2171 4.211164 TGCGATTACATATGAAGCCTTTCG 59.789 41.667 10.38 8.70 36.04 3.46
1668 2178 5.185454 ACATATGAAGCCTTTCGAATGTGA 58.815 37.500 10.38 0.00 38.65 3.58
1669 2179 5.824624 ACATATGAAGCCTTTCGAATGTGAT 59.175 36.000 10.38 0.00 38.65 3.06
1674 2184 1.470098 GCCTTTCGAATGTGATGTGCT 59.530 47.619 0.00 0.00 0.00 4.40
1675 2185 2.095059 GCCTTTCGAATGTGATGTGCTT 60.095 45.455 0.00 0.00 0.00 3.91
1708 2218 4.982241 ATGGTGGTAGCTGCTAATGTAT 57.018 40.909 11.57 0.42 0.00 2.29
1709 2219 4.071961 TGGTGGTAGCTGCTAATGTATG 57.928 45.455 11.57 0.00 0.00 2.39
1710 2220 2.808543 GGTGGTAGCTGCTAATGTATGC 59.191 50.000 11.57 0.00 0.00 3.14
1711 2221 3.495100 GGTGGTAGCTGCTAATGTATGCT 60.495 47.826 11.57 0.00 37.72 3.79
1715 2225 1.602311 GCTGCTAATGTATGCTGCCT 58.398 50.000 0.00 0.00 44.54 4.75
1716 2226 1.266175 GCTGCTAATGTATGCTGCCTG 59.734 52.381 0.00 0.00 44.54 4.85
1717 2227 2.569059 CTGCTAATGTATGCTGCCTGT 58.431 47.619 0.00 0.00 0.00 4.00
1718 2228 2.289820 CTGCTAATGTATGCTGCCTGTG 59.710 50.000 0.00 0.00 0.00 3.66
1719 2229 1.002033 GCTAATGTATGCTGCCTGTGC 60.002 52.381 0.00 0.00 38.26 4.57
1720 2230 1.605710 CTAATGTATGCTGCCTGTGCC 59.394 52.381 0.00 0.00 36.33 5.01
1721 2231 0.033796 AATGTATGCTGCCTGTGCCT 60.034 50.000 0.00 0.00 36.33 4.75
1722 2232 0.033796 ATGTATGCTGCCTGTGCCTT 60.034 50.000 0.00 0.00 36.33 4.35
1730 2240 0.609957 TGCCTGTGCCTTCTTCCATG 60.610 55.000 0.00 0.00 36.33 3.66
1735 2245 1.133513 TGTGCCTTCTTCCATGGTTGT 60.134 47.619 12.58 0.00 0.00 3.32
1757 2267 1.944024 CGGCCTGTGAACAAAAGTGTA 59.056 47.619 0.00 0.00 36.80 2.90
1759 2269 3.004315 CGGCCTGTGAACAAAAGTGTATT 59.996 43.478 0.00 0.00 36.80 1.89
1774 2284 9.708222 CAAAAGTGTATTATTGCTGTGTAGATC 57.292 33.333 0.00 0.00 0.00 2.75
1783 2293 0.460284 CTGTGTAGATCGTGGTGGCC 60.460 60.000 0.00 0.00 0.00 5.36
1834 2347 8.265764 GGTAAAGTAGTCTAAATTCTGATGGGT 58.734 37.037 0.00 0.00 0.00 4.51
1836 2349 7.496346 AAGTAGTCTAAATTCTGATGGGTGA 57.504 36.000 0.00 0.00 0.00 4.02
1839 2352 5.983540 AGTCTAAATTCTGATGGGTGAGTC 58.016 41.667 0.00 0.00 0.00 3.36
1854 2367 1.895798 TGAGTCAGTTACAGCAGGGAG 59.104 52.381 0.00 0.00 0.00 4.30
1867 2380 1.804372 GCAGGGAGTCATGCTACTTCG 60.804 57.143 11.27 0.00 46.01 3.79
1868 2381 1.478510 CAGGGAGTCATGCTACTTCGT 59.521 52.381 0.00 0.00 0.00 3.85
1892 2417 2.175069 TGGGTTAGGTGTTGGCAACTTA 59.825 45.455 28.71 16.34 40.28 2.24
1893 2418 2.555325 GGGTTAGGTGTTGGCAACTTAC 59.445 50.000 28.71 19.74 40.28 2.34
1895 2420 3.483421 GTTAGGTGTTGGCAACTTACCT 58.517 45.455 32.37 32.37 40.28 3.08
1896 2421 4.644498 GTTAGGTGTTGGCAACTTACCTA 58.356 43.478 30.79 30.79 40.28 3.08
1897 2422 3.136009 AGGTGTTGGCAACTTACCTAC 57.864 47.619 30.40 19.80 40.28 3.18
1898 2423 2.440253 AGGTGTTGGCAACTTACCTACA 59.560 45.455 30.40 9.98 40.28 2.74
1899 2424 2.812011 GGTGTTGGCAACTTACCTACAG 59.188 50.000 28.71 0.00 42.32 2.74
1900 2425 2.225727 GTGTTGGCAACTTACCTACAGC 59.774 50.000 28.71 0.63 42.32 4.40
1903 2428 1.003118 TGGCAACTTACCTACAGCCAG 59.997 52.381 0.00 0.00 46.25 4.85
1904 2429 1.278127 GGCAACTTACCTACAGCCAGA 59.722 52.381 0.00 0.00 41.63 3.86
1905 2430 2.092914 GGCAACTTACCTACAGCCAGAT 60.093 50.000 0.00 0.00 41.63 2.90
1907 2432 4.120589 GCAACTTACCTACAGCCAGATAC 58.879 47.826 0.00 0.00 0.00 2.24
1911 2436 0.260816 ACCTACAGCCAGATACGGGA 59.739 55.000 0.00 0.00 0.00 5.14
1912 2437 1.133136 ACCTACAGCCAGATACGGGAT 60.133 52.381 0.00 0.00 0.00 3.85
1913 2438 1.971357 CCTACAGCCAGATACGGGATT 59.029 52.381 0.00 0.00 0.00 3.01
1914 2439 2.289072 CCTACAGCCAGATACGGGATTG 60.289 54.545 0.00 0.00 0.00 2.67
1915 2440 0.469917 ACAGCCAGATACGGGATTGG 59.530 55.000 0.00 0.00 0.00 3.16
1916 2441 0.758734 CAGCCAGATACGGGATTGGA 59.241 55.000 5.83 0.00 32.34 3.53
1917 2442 0.759346 AGCCAGATACGGGATTGGAC 59.241 55.000 5.83 0.00 32.34 4.02
1918 2443 0.250338 GCCAGATACGGGATTGGACC 60.250 60.000 5.83 0.00 32.34 4.46
1919 2444 1.128200 CCAGATACGGGATTGGACCA 58.872 55.000 0.00 0.00 32.34 4.02
1920 2445 1.699634 CCAGATACGGGATTGGACCAT 59.300 52.381 0.00 0.00 32.34 3.55
1921 2446 2.289694 CCAGATACGGGATTGGACCATC 60.290 54.545 0.00 0.00 32.34 3.51
1922 2447 1.618837 AGATACGGGATTGGACCATCG 59.381 52.381 0.00 0.18 0.00 3.84
1926 2456 0.814010 CGGGATTGGACCATCGGTTC 60.814 60.000 0.00 0.00 35.25 3.62
1930 2460 2.224209 GGATTGGACCATCGGTTCGTAT 60.224 50.000 0.00 0.00 35.25 3.06
2027 2563 4.997905 ACAGATGAAATTGTGTGTCTCG 57.002 40.909 0.00 0.00 0.00 4.04
2061 2597 5.392380 CCACACACATTGGCTTATTTCTCTC 60.392 44.000 0.00 0.00 0.00 3.20
2094 2646 1.002011 GGAGAGAACACCAAGGGGC 60.002 63.158 0.00 0.00 37.90 5.80
2106 2658 1.918293 AAGGGGCGGTGAGTCATGA 60.918 57.895 0.00 0.00 0.00 3.07
2158 2719 5.300286 AGTTGCAGATAGAAGTTTGCTGTTT 59.700 36.000 0.00 0.00 37.45 2.83
2164 2725 3.806625 AGAAGTTTGCTGTTTGTGCAT 57.193 38.095 0.00 0.00 40.34 3.96
2181 2742 9.364989 GTTTGTGCATAATGGAAATAGCTTTTA 57.635 29.630 0.00 0.00 0.00 1.52
2209 2770 9.696917 GAATTAGTGAACAATTTGAATCTGGTT 57.303 29.630 2.79 0.00 0.00 3.67
2214 2775 6.200854 GTGAACAATTTGAATCTGGTTGAACC 59.799 38.462 7.57 7.57 39.22 3.62
2307 2868 9.716531 TCATAATTCATTGTCCATCATCTAGTC 57.283 33.333 0.00 0.00 0.00 2.59
2333 3019 3.094484 TCATAATTTTTGGCGGGTCCT 57.906 42.857 0.00 0.00 35.26 3.85
2334 3020 3.436243 TCATAATTTTTGGCGGGTCCTT 58.564 40.909 0.00 0.00 35.26 3.36
2482 3203 3.619929 GCTTGGATTTGCATGGTGATTTC 59.380 43.478 0.00 0.00 0.00 2.17
2483 3204 4.823157 CTTGGATTTGCATGGTGATTTCA 58.177 39.130 0.00 0.00 0.00 2.69
2486 3207 4.283978 TGGATTTGCATGGTGATTTCACTT 59.716 37.500 10.32 0.00 45.73 3.16
2487 3208 4.866486 GGATTTGCATGGTGATTTCACTTC 59.134 41.667 10.32 0.00 45.73 3.01
2491 3212 4.873817 TGCATGGTGATTTCACTTCTTTG 58.126 39.130 10.32 3.57 45.73 2.77
2492 3213 4.240096 GCATGGTGATTTCACTTCTTTGG 58.760 43.478 10.32 0.00 45.73 3.28
2497 3218 4.507756 GGTGATTTCACTTCTTTGGTTTGC 59.492 41.667 10.32 0.00 45.73 3.68
2498 3219 5.108517 GTGATTTCACTTCTTTGGTTTGCA 58.891 37.500 3.45 0.00 43.25 4.08
2499 3220 5.005682 GTGATTTCACTTCTTTGGTTTGCAC 59.994 40.000 3.45 0.00 43.25 4.57
2500 3221 4.527509 TTTCACTTCTTTGGTTTGCACA 57.472 36.364 0.00 0.00 0.00 4.57
2501 3222 4.734398 TTCACTTCTTTGGTTTGCACAT 57.266 36.364 0.00 0.00 0.00 3.21
2502 3223 4.044336 TCACTTCTTTGGTTTGCACATG 57.956 40.909 0.00 0.00 0.00 3.21
2503 3224 3.446873 TCACTTCTTTGGTTTGCACATGT 59.553 39.130 0.00 0.00 0.00 3.21
2504 3225 4.081752 TCACTTCTTTGGTTTGCACATGTT 60.082 37.500 0.00 0.00 0.00 2.71
2505 3226 4.630940 CACTTCTTTGGTTTGCACATGTTT 59.369 37.500 0.00 0.00 0.00 2.83
2506 3227 4.630940 ACTTCTTTGGTTTGCACATGTTTG 59.369 37.500 0.00 0.00 0.00 2.93
2507 3228 4.199432 TCTTTGGTTTGCACATGTTTGT 57.801 36.364 0.00 0.00 36.15 2.83
2521 3242 6.843069 ACATGTTTGTGGAAGCAATTTAAC 57.157 33.333 0.00 0.00 33.85 2.01
2522 3243 6.581712 ACATGTTTGTGGAAGCAATTTAACT 58.418 32.000 0.00 0.00 33.85 2.24
2523 3244 7.721402 ACATGTTTGTGGAAGCAATTTAACTA 58.279 30.769 0.00 0.00 33.85 2.24
2524 3245 7.867403 ACATGTTTGTGGAAGCAATTTAACTAG 59.133 33.333 0.00 0.00 33.85 2.57
2525 3246 7.575414 TGTTTGTGGAAGCAATTTAACTAGA 57.425 32.000 0.00 0.00 0.00 2.43
2526 3247 8.177119 TGTTTGTGGAAGCAATTTAACTAGAT 57.823 30.769 0.00 0.00 0.00 1.98
2527 3248 8.637986 TGTTTGTGGAAGCAATTTAACTAGATT 58.362 29.630 0.00 0.00 0.00 2.40
2528 3249 9.129209 GTTTGTGGAAGCAATTTAACTAGATTC 57.871 33.333 0.00 0.00 0.00 2.52
2529 3250 8.635765 TTGTGGAAGCAATTTAACTAGATTCT 57.364 30.769 0.00 0.00 0.00 2.40
2530 3251 9.733556 TTGTGGAAGCAATTTAACTAGATTCTA 57.266 29.630 0.00 0.00 0.00 2.10
2531 3252 9.162764 TGTGGAAGCAATTTAACTAGATTCTAC 57.837 33.333 0.00 0.00 38.03 2.59
2532 3253 9.162764 GTGGAAGCAATTTAACTAGATTCTACA 57.837 33.333 0.00 0.00 37.66 2.74
2533 3254 9.905713 TGGAAGCAATTTAACTAGATTCTACAT 57.094 29.630 0.00 0.00 0.00 2.29
2537 3258 8.624776 AGCAATTTAACTAGATTCTACATTGGC 58.375 33.333 0.00 0.00 0.00 4.52
2538 3259 7.862873 GCAATTTAACTAGATTCTACATTGGCC 59.137 37.037 0.00 0.00 0.00 5.36
2539 3260 8.352942 CAATTTAACTAGATTCTACATTGGCCC 58.647 37.037 0.00 0.00 0.00 5.80
2540 3261 3.753294 ACTAGATTCTACATTGGCCCG 57.247 47.619 0.00 0.00 0.00 6.13
2541 3262 2.224305 ACTAGATTCTACATTGGCCCGC 60.224 50.000 0.00 0.00 0.00 6.13
2542 3263 0.839946 AGATTCTACATTGGCCCGCT 59.160 50.000 0.00 0.00 0.00 5.52
2543 3264 2.047061 AGATTCTACATTGGCCCGCTA 58.953 47.619 0.00 0.00 0.00 4.26
2544 3265 2.639839 AGATTCTACATTGGCCCGCTAT 59.360 45.455 0.00 0.00 0.00 2.97
2545 3266 3.838317 AGATTCTACATTGGCCCGCTATA 59.162 43.478 0.00 0.00 0.00 1.31
2546 3267 4.286032 AGATTCTACATTGGCCCGCTATAA 59.714 41.667 0.00 0.00 0.00 0.98
2547 3268 4.634012 TTCTACATTGGCCCGCTATAAT 57.366 40.909 0.00 0.00 0.00 1.28
2548 3269 5.748670 TTCTACATTGGCCCGCTATAATA 57.251 39.130 0.00 0.00 0.00 0.98
2549 3270 5.748670 TCTACATTGGCCCGCTATAATAA 57.251 39.130 0.00 0.00 0.00 1.40
2550 3271 5.484715 TCTACATTGGCCCGCTATAATAAC 58.515 41.667 0.00 0.00 0.00 1.89
2551 3272 4.367039 ACATTGGCCCGCTATAATAACT 57.633 40.909 0.00 0.00 0.00 2.24
2552 3273 4.725490 ACATTGGCCCGCTATAATAACTT 58.275 39.130 0.00 0.00 0.00 2.66
2553 3274 5.871834 ACATTGGCCCGCTATAATAACTTA 58.128 37.500 0.00 0.00 0.00 2.24
2554 3275 6.300703 ACATTGGCCCGCTATAATAACTTAA 58.699 36.000 0.00 0.00 0.00 1.85
2555 3276 6.430000 ACATTGGCCCGCTATAATAACTTAAG 59.570 38.462 0.00 0.00 0.00 1.85
2556 3277 4.320870 TGGCCCGCTATAATAACTTAAGC 58.679 43.478 0.00 0.00 0.00 3.09
2557 3278 4.041198 TGGCCCGCTATAATAACTTAAGCT 59.959 41.667 0.00 0.00 0.00 3.74
2558 3279 5.001874 GGCCCGCTATAATAACTTAAGCTT 58.998 41.667 3.48 3.48 0.00 3.74
2559 3280 6.168389 GGCCCGCTATAATAACTTAAGCTTA 58.832 40.000 0.86 0.86 0.00 3.09
2560 3281 6.313164 GGCCCGCTATAATAACTTAAGCTTAG 59.687 42.308 6.24 4.07 0.00 2.18
2561 3282 7.095270 GCCCGCTATAATAACTTAAGCTTAGA 58.905 38.462 6.24 0.00 0.00 2.10
2577 3298 4.774200 AGCTTAGATTTGCATCTGGGTTTT 59.226 37.500 0.00 0.00 40.28 2.43
2606 3327 9.693739 TGTACACCAAATATATTCAAATGGAGT 57.306 29.630 17.19 16.73 36.13 3.85
2699 3421 4.686191 ACCTTCTGCTCCATATCTCTTG 57.314 45.455 0.00 0.00 0.00 3.02
2795 3525 7.229506 GGCCATATAATTTAGAGGATGTATGCC 59.770 40.741 0.00 0.00 0.00 4.40
2868 3603 5.804639 TGAGAATGTGCCACTAATAACTGT 58.195 37.500 0.00 0.00 0.00 3.55
2912 3647 5.396484 CAAGTATTGCAATCACCAGAACAG 58.604 41.667 16.86 0.27 40.39 3.16
2979 3719 6.464530 ACTAGAAAAGGGGGAACTTGTTAT 57.535 37.500 0.00 0.00 0.00 1.89
3097 3837 3.934579 CACCTTTTGTTTGCAAGCTCTTT 59.065 39.130 14.67 0.00 35.82 2.52
3170 3910 2.342279 CCCAAGCTGTTCGTCGGA 59.658 61.111 0.00 0.00 0.00 4.55
3185 3925 2.036475 CGTCGGAATGATCCTCATCCTT 59.964 50.000 0.00 0.00 44.17 3.36
3279 4020 1.871039 GTGCCGACTAGAAACAAAGCA 59.129 47.619 0.00 0.00 0.00 3.91
3395 4138 2.775890 ACTTCTGTGTTCATGCTCCTG 58.224 47.619 0.00 0.00 0.00 3.86
3396 4139 2.369860 ACTTCTGTGTTCATGCTCCTGA 59.630 45.455 0.00 0.00 0.00 3.86
3446 4193 1.507140 TCATAGGGATTTCCACGCCT 58.493 50.000 0.00 0.00 38.24 5.52
3469 4216 8.239998 GCCTGCCATCTGTAATTTTATTCTATC 58.760 37.037 0.00 0.00 0.00 2.08
3562 4311 1.522580 GCGATGAGCCTCTTGGGAC 60.523 63.158 0.00 0.00 40.81 4.46
3571 4328 1.726853 CCTCTTGGGACGTGATGAAC 58.273 55.000 0.00 0.00 37.23 3.18
3662 4419 1.669999 GGGGCATGTGGAGTGAATGC 61.670 60.000 0.00 0.00 44.75 3.56
3667 4424 1.135489 CATGTGGAGTGAATGCTGTGC 60.135 52.381 0.00 0.00 0.00 4.57
3679 4436 4.983538 TGAATGCTGTGCTTGTTATGTTTG 59.016 37.500 0.00 0.00 0.00 2.93
3682 4439 3.885901 TGCTGTGCTTGTTATGTTTGGTA 59.114 39.130 0.00 0.00 0.00 3.25
3770 5769 9.801873 TTTTGAAATTTGTGGTTTTGTGAAAAA 57.198 22.222 0.00 0.00 31.13 1.94
3785 5784 6.718454 TGTGAAAAATTCTTGTTGTGTTGG 57.282 33.333 0.00 0.00 0.00 3.77
3791 5798 1.975660 TCTTGTTGTGTTGGTAGGGC 58.024 50.000 0.00 0.00 0.00 5.19
3794 5801 0.533308 TGTTGTGTTGGTAGGGCGAC 60.533 55.000 0.00 0.00 0.00 5.19
3802 5809 1.180456 TGGTAGGGCGACTGAACGAA 61.180 55.000 0.00 0.00 35.09 3.85
3803 5810 0.735287 GGTAGGGCGACTGAACGAAC 60.735 60.000 0.00 0.00 35.09 3.95
3805 5812 0.963962 TAGGGCGACTGAACGAACTT 59.036 50.000 0.00 0.00 35.09 2.66
3806 5813 0.600255 AGGGCGACTGAACGAACTTG 60.600 55.000 0.00 0.00 35.09 3.16
3807 5814 1.566018 GGGCGACTGAACGAACTTGG 61.566 60.000 0.00 0.00 35.09 3.61
3808 5815 1.204312 GCGACTGAACGAACTTGGC 59.796 57.895 0.00 0.00 35.09 4.52
3811 5818 2.333926 CGACTGAACGAACTTGGCATA 58.666 47.619 0.00 0.00 35.09 3.14
3812 5819 2.930040 CGACTGAACGAACTTGGCATAT 59.070 45.455 0.00 0.00 35.09 1.78
3813 5820 4.109766 CGACTGAACGAACTTGGCATATA 58.890 43.478 0.00 0.00 35.09 0.86
3814 5821 4.026804 CGACTGAACGAACTTGGCATATAC 60.027 45.833 0.00 0.00 35.09 1.47
3815 5822 5.086104 ACTGAACGAACTTGGCATATACT 57.914 39.130 0.00 0.00 0.00 2.12
3816 5823 5.109903 ACTGAACGAACTTGGCATATACTC 58.890 41.667 0.00 0.00 0.00 2.59
3817 5824 5.079689 TGAACGAACTTGGCATATACTCA 57.920 39.130 0.00 0.00 0.00 3.41
3818 5825 4.868171 TGAACGAACTTGGCATATACTCAC 59.132 41.667 0.00 0.00 0.00 3.51
3819 5826 4.737855 ACGAACTTGGCATATACTCACT 57.262 40.909 0.00 0.00 0.00 3.41
3820 5827 5.086104 ACGAACTTGGCATATACTCACTT 57.914 39.130 0.00 0.00 0.00 3.16
3821 5828 4.870426 ACGAACTTGGCATATACTCACTTG 59.130 41.667 0.00 0.00 0.00 3.16
3822 5829 4.870426 CGAACTTGGCATATACTCACTTGT 59.130 41.667 0.00 0.00 0.00 3.16
3823 5830 5.005779 CGAACTTGGCATATACTCACTTGTC 59.994 44.000 0.00 0.00 0.00 3.18
3824 5831 4.770795 ACTTGGCATATACTCACTTGTCC 58.229 43.478 0.00 0.00 0.00 4.02
3825 5832 3.838244 TGGCATATACTCACTTGTCCC 57.162 47.619 0.00 0.00 0.00 4.46
3826 5833 3.111484 TGGCATATACTCACTTGTCCCA 58.889 45.455 0.00 0.00 0.00 4.37
3827 5834 3.716353 TGGCATATACTCACTTGTCCCAT 59.284 43.478 0.00 0.00 0.00 4.00
3828 5835 4.904853 TGGCATATACTCACTTGTCCCATA 59.095 41.667 0.00 0.00 0.00 2.74
3829 5836 5.368230 TGGCATATACTCACTTGTCCCATAA 59.632 40.000 0.00 0.00 0.00 1.90
3830 5837 6.044287 TGGCATATACTCACTTGTCCCATAAT 59.956 38.462 0.00 0.00 0.00 1.28
3831 5838 7.236640 TGGCATATACTCACTTGTCCCATAATA 59.763 37.037 0.00 0.00 0.00 0.98
3832 5839 8.267894 GGCATATACTCACTTGTCCCATAATAT 58.732 37.037 0.00 0.00 0.00 1.28
3838 5845 8.554490 ACTCACTTGTCCCATAATATAAGAGT 57.446 34.615 0.00 0.00 0.00 3.24
3839 5846 8.424918 ACTCACTTGTCCCATAATATAAGAGTG 58.575 37.037 0.00 0.00 33.85 3.51
3840 5847 8.319057 TCACTTGTCCCATAATATAAGAGTGT 57.681 34.615 0.00 0.00 34.14 3.55
3841 5848 8.768397 TCACTTGTCCCATAATATAAGAGTGTT 58.232 33.333 0.00 0.00 34.14 3.32
3842 5849 9.396022 CACTTGTCCCATAATATAAGAGTGTTT 57.604 33.333 0.00 0.00 0.00 2.83
3843 5850 9.975218 ACTTGTCCCATAATATAAGAGTGTTTT 57.025 29.630 0.00 0.00 0.00 2.43
3846 5853 9.967451 TGTCCCATAATATAAGAGTGTTTTTGA 57.033 29.630 0.00 0.00 0.00 2.69
3848 5855 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
3864 5871 9.865321 TGTTTTTGACACTATAGGAGTATGTAC 57.135 33.333 4.43 0.00 35.64 2.90
3865 5872 9.310716 GTTTTTGACACTATAGGAGTATGTACC 57.689 37.037 4.43 0.00 35.64 3.34
3903 5966 7.873719 TGGATCTGTGTTTTTAACTGAGAAA 57.126 32.000 0.00 0.00 0.00 2.52
4002 6065 8.915036 CCTGTACCTATACAACTTATTGAGACT 58.085 37.037 0.00 0.00 40.84 3.24
4003 6066 9.737427 CTGTACCTATACAACTTATTGAGACTG 57.263 37.037 0.00 0.00 40.84 3.51
4004 6067 9.470399 TGTACCTATACAACTTATTGAGACTGA 57.530 33.333 0.00 0.00 38.40 3.41
4005 6068 9.953697 GTACCTATACAACTTATTGAGACTGAG 57.046 37.037 0.00 0.00 39.30 3.35
4006 6069 8.824756 ACCTATACAACTTATTGAGACTGAGA 57.175 34.615 0.00 0.00 39.30 3.27
4007 6070 8.688151 ACCTATACAACTTATTGAGACTGAGAC 58.312 37.037 0.00 0.00 39.30 3.36
4048 6111 7.628101 ACCCTAGAATGAACCCTAAATTCTACT 59.372 37.037 0.00 0.00 40.32 2.57
4084 6147 2.094545 GTCCTTTCCATGGTTGATGCAC 60.095 50.000 12.58 0.00 0.00 4.57
4121 6187 2.354704 CCTCACTGTTATCTTCCCGCAA 60.355 50.000 0.00 0.00 0.00 4.85
4143 6209 3.347590 GCCTTAGCCCCCACCCTT 61.348 66.667 0.00 0.00 0.00 3.95
4152 6218 2.201210 CCCACCCTTTGGCCAACT 59.799 61.111 20.35 0.00 45.37 3.16
4160 6226 0.322906 CTTTGGCCAACTCTCCTCCC 60.323 60.000 20.35 0.00 0.00 4.30
4166 6232 1.577736 CCAACTCTCCTCCCATCACT 58.422 55.000 0.00 0.00 0.00 3.41
4189 6256 1.151810 ACACCATGTCACCCCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
4193 6260 0.990282 CCATGTCACCCCCTCTCCAT 60.990 60.000 0.00 0.00 0.00 3.41
4195 6262 1.285962 CATGTCACCCCCTCTCCATTT 59.714 52.381 0.00 0.00 0.00 2.32
4200 6267 1.380380 CCCCCTCTCCATTTGCACC 60.380 63.158 0.00 0.00 0.00 5.01
4209 6276 1.315257 CCATTTGCACCTTCTCCCCG 61.315 60.000 0.00 0.00 0.00 5.73
4210 6277 0.609131 CATTTGCACCTTCTCCCCGT 60.609 55.000 0.00 0.00 0.00 5.28
4211 6278 0.609131 ATTTGCACCTTCTCCCCGTG 60.609 55.000 0.00 0.00 0.00 4.94
4216 6283 0.613853 CACCTTCTCCCCGTGACCTA 60.614 60.000 0.00 0.00 0.00 3.08
4222 6289 4.814294 CCCCGTGACCTAGCGCAC 62.814 72.222 11.47 0.00 0.00 5.34
4223 6290 4.063967 CCCGTGACCTAGCGCACA 62.064 66.667 11.47 0.00 34.78 4.57
4240 6307 0.528924 ACACGCATAGCCTCAACGTA 59.471 50.000 0.00 0.00 34.79 3.57
4241 6308 0.921347 CACGCATAGCCTCAACGTAC 59.079 55.000 0.00 0.00 34.79 3.67
4242 6309 0.815734 ACGCATAGCCTCAACGTACT 59.184 50.000 0.00 0.00 34.79 2.73
4243 6310 1.200483 CGCATAGCCTCAACGTACTG 58.800 55.000 0.00 0.00 0.00 2.74
4244 6311 0.931005 GCATAGCCTCAACGTACTGC 59.069 55.000 0.00 0.00 0.00 4.40
4245 6312 1.571919 CATAGCCTCAACGTACTGCC 58.428 55.000 0.00 0.00 0.00 4.85
4246 6313 0.464452 ATAGCCTCAACGTACTGCCC 59.536 55.000 0.00 0.00 0.00 5.36
4247 6314 0.613853 TAGCCTCAACGTACTGCCCT 60.614 55.000 0.00 0.00 0.00 5.19
4248 6315 0.613853 AGCCTCAACGTACTGCCCTA 60.614 55.000 0.00 0.00 0.00 3.53
4249 6316 0.459759 GCCTCAACGTACTGCCCTAC 60.460 60.000 0.00 0.00 0.00 3.18
4250 6317 0.892755 CCTCAACGTACTGCCCTACA 59.107 55.000 0.00 0.00 0.00 2.74
4261 6328 4.643795 CCCTACAGGCCACATGTG 57.356 61.111 19.31 19.31 32.02 3.21
4262 6329 1.685224 CCCTACAGGCCACATGTGT 59.315 57.895 23.79 8.06 32.02 3.72
4263 6330 0.392998 CCCTACAGGCCACATGTGTC 60.393 60.000 23.79 12.06 32.02 3.67
4264 6331 0.615331 CCTACAGGCCACATGTGTCT 59.385 55.000 23.79 17.20 32.02 3.41
4265 6332 1.831106 CCTACAGGCCACATGTGTCTA 59.169 52.381 23.79 6.86 32.02 2.59
4266 6333 2.236146 CCTACAGGCCACATGTGTCTAA 59.764 50.000 23.79 11.23 32.02 2.10
4267 6334 2.949177 ACAGGCCACATGTGTCTAAA 57.051 45.000 23.79 0.00 0.00 1.85
4268 6335 3.222173 ACAGGCCACATGTGTCTAAAA 57.778 42.857 23.79 0.00 0.00 1.52
4269 6336 3.149196 ACAGGCCACATGTGTCTAAAAG 58.851 45.455 23.79 8.24 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
437 493 1.493950 CTCCGTCGCCATCTTGATGC 61.494 60.000 5.16 1.16 0.00 3.91
550 707 1.984570 CTCCTCCTTGACTCGGGCA 60.985 63.158 0.00 0.00 0.00 5.36
819 1033 0.249155 CTAAAATCGCCGCGTAGGGA 60.249 55.000 13.39 4.80 46.37 4.20
823 1037 1.473857 GCGTCTAAAATCGCCGCGTA 61.474 55.000 13.39 0.00 45.54 4.42
825 1039 2.054242 GCGTCTAAAATCGCCGCG 60.054 61.111 6.39 6.39 45.54 6.46
901 1123 4.044825 TGGGAGAGGGAGGAGAGATATTAC 59.955 50.000 0.00 0.00 0.00 1.89
1130 1637 4.450122 CTGCATCACACCACGCGC 62.450 66.667 5.73 0.00 0.00 6.86
1135 1642 1.679641 CCATGCCTGCATCACACCA 60.680 57.895 0.70 0.00 33.90 4.17
1137 1644 2.420568 CCCCATGCCTGCATCACAC 61.421 63.158 0.70 0.00 33.90 3.82
1138 1645 2.043752 CCCCATGCCTGCATCACA 60.044 61.111 0.70 0.00 33.90 3.58
1139 1646 2.836360 CCCCCATGCCTGCATCAC 60.836 66.667 0.70 0.00 33.90 3.06
1140 1647 4.845447 GCCCCCATGCCTGCATCA 62.845 66.667 0.70 0.00 33.90 3.07
1254 1761 2.122989 TAGATCCCGAGCACCCCC 60.123 66.667 0.00 0.00 0.00 5.40
1440 1947 3.199508 CAGGAAGAGGGGGATATGCATAG 59.800 52.174 12.79 0.00 0.00 2.23
1444 1953 1.734655 TCAGGAAGAGGGGGATATGC 58.265 55.000 0.00 0.00 0.00 3.14
1449 1958 1.082766 TGCATCAGGAAGAGGGGGA 59.917 57.895 0.00 0.00 0.00 4.81
1450 1959 1.225704 GTGCATCAGGAAGAGGGGG 59.774 63.158 0.00 0.00 0.00 5.40
1457 1966 1.227793 TGTGTGCGTGCATCAGGAA 60.228 52.632 0.00 0.00 0.00 3.36
1459 1968 2.557805 GTGTGTGCGTGCATCAGG 59.442 61.111 0.00 0.00 0.00 3.86
1469 1978 2.943345 CTTCAGGTCGCGTGTGTGC 61.943 63.158 5.77 0.00 0.00 4.57
1470 1979 1.278172 CTCTTCAGGTCGCGTGTGTG 61.278 60.000 5.77 0.00 0.00 3.82
1471 1980 1.007271 CTCTTCAGGTCGCGTGTGT 60.007 57.895 5.77 0.00 0.00 3.72
1472 1981 0.109086 ATCTCTTCAGGTCGCGTGTG 60.109 55.000 5.77 2.05 0.00 3.82
1473 1982 0.603569 AATCTCTTCAGGTCGCGTGT 59.396 50.000 5.77 0.00 0.00 4.49
1475 1984 1.000955 ACAAATCTCTTCAGGTCGCGT 59.999 47.619 5.77 0.00 0.00 6.01
1476 1985 1.656095 GACAAATCTCTTCAGGTCGCG 59.344 52.381 0.00 0.00 0.00 5.87
1477 1986 2.003301 GGACAAATCTCTTCAGGTCGC 58.997 52.381 0.00 0.00 0.00 5.19
1478 1987 3.319137 TGGACAAATCTCTTCAGGTCG 57.681 47.619 0.00 0.00 0.00 4.79
1479 1988 5.006386 ACATTGGACAAATCTCTTCAGGTC 58.994 41.667 0.00 0.00 0.00 3.85
1480 1989 4.763793 CACATTGGACAAATCTCTTCAGGT 59.236 41.667 0.00 0.00 0.00 4.00
1481 1990 4.763793 ACACATTGGACAAATCTCTTCAGG 59.236 41.667 0.00 0.00 0.00 3.86
1482 1991 5.696822 CACACATTGGACAAATCTCTTCAG 58.303 41.667 0.00 0.00 0.00 3.02
1483 1992 5.694231 CACACATTGGACAAATCTCTTCA 57.306 39.130 0.00 0.00 0.00 3.02
1497 2006 5.902613 ACATCAAATACTCCCACACATTG 57.097 39.130 0.00 0.00 0.00 2.82
1499 2008 8.055181 AGATTTACATCAAATACTCCCACACAT 58.945 33.333 0.00 0.00 36.96 3.21
1513 2022 7.001674 ACCAACTACCACAAGATTTACATCAA 58.998 34.615 0.00 0.00 0.00 2.57
1520 2029 6.182507 TCAGTACCAACTACCACAAGATTT 57.817 37.500 0.00 0.00 33.48 2.17
1592 2101 1.755179 CCCAGAACCAAGTAGCATGG 58.245 55.000 0.00 0.00 43.84 3.66
1637 2147 5.277297 CGAAAGGCTTCATATGTAATCGCAA 60.277 40.000 0.00 0.00 0.00 4.85
1638 2148 4.211164 CGAAAGGCTTCATATGTAATCGCA 59.789 41.667 0.00 0.00 0.00 5.10
1640 2150 6.525121 TTCGAAAGGCTTCATATGTAATCG 57.475 37.500 0.00 2.85 0.00 3.34
1641 2151 7.800380 CACATTCGAAAGGCTTCATATGTAATC 59.200 37.037 0.00 0.00 35.26 1.75
1642 2152 7.498900 TCACATTCGAAAGGCTTCATATGTAAT 59.501 33.333 0.00 0.00 35.26 1.89
1658 2168 2.743664 CTCCAAGCACATCACATTCGAA 59.256 45.455 0.00 0.00 0.00 3.71
1661 2171 2.715046 TCCTCCAAGCACATCACATTC 58.285 47.619 0.00 0.00 0.00 2.67
1668 2178 1.927487 TTTGCATCCTCCAAGCACAT 58.073 45.000 0.00 0.00 38.11 3.21
1669 2179 1.546923 CATTTGCATCCTCCAAGCACA 59.453 47.619 0.00 0.00 38.11 4.57
1674 2184 1.203162 ACCACCATTTGCATCCTCCAA 60.203 47.619 0.00 0.00 0.00 3.53
1675 2185 0.409092 ACCACCATTTGCATCCTCCA 59.591 50.000 0.00 0.00 0.00 3.86
1708 2218 1.601759 GAAGAAGGCACAGGCAGCA 60.602 57.895 0.00 0.00 43.71 4.41
1709 2219 2.338785 GGAAGAAGGCACAGGCAGC 61.339 63.158 0.00 0.00 43.71 5.25
1710 2220 0.323178 ATGGAAGAAGGCACAGGCAG 60.323 55.000 0.00 0.00 43.71 4.85
1711 2221 0.609957 CATGGAAGAAGGCACAGGCA 60.610 55.000 0.00 0.00 43.71 4.75
1713 2223 0.038744 ACCATGGAAGAAGGCACAGG 59.961 55.000 21.47 0.00 0.00 4.00
1714 2224 1.542915 CAACCATGGAAGAAGGCACAG 59.457 52.381 21.47 0.00 0.00 3.66
1715 2225 1.133513 ACAACCATGGAAGAAGGCACA 60.134 47.619 21.47 0.00 0.00 4.57
1716 2226 1.270550 CACAACCATGGAAGAAGGCAC 59.729 52.381 21.47 0.00 0.00 5.01
1717 2227 1.619654 CACAACCATGGAAGAAGGCA 58.380 50.000 21.47 0.00 0.00 4.75
1718 2228 0.244721 GCACAACCATGGAAGAAGGC 59.755 55.000 21.47 10.26 0.00 4.35
1719 2229 0.523072 CGCACAACCATGGAAGAAGG 59.477 55.000 21.47 3.64 0.00 3.46
1720 2230 0.523072 CCGCACAACCATGGAAGAAG 59.477 55.000 21.47 9.41 0.00 2.85
1721 2231 1.523154 GCCGCACAACCATGGAAGAA 61.523 55.000 21.47 0.00 0.00 2.52
1722 2232 1.971167 GCCGCACAACCATGGAAGA 60.971 57.895 21.47 0.00 0.00 2.87
1730 2240 2.904866 TTCACAGGCCGCACAACC 60.905 61.111 0.00 0.00 0.00 3.77
1735 2245 1.034838 ACTTTTGTTCACAGGCCGCA 61.035 50.000 0.00 0.00 0.00 5.69
1757 2267 4.811024 CACCACGATCTACACAGCAATAAT 59.189 41.667 0.00 0.00 0.00 1.28
1759 2269 3.430236 CCACCACGATCTACACAGCAATA 60.430 47.826 0.00 0.00 0.00 1.90
1774 2284 2.702751 TTACACTCACGGCCACCACG 62.703 60.000 2.24 0.00 37.36 4.94
1783 2293 4.923871 ACTAGCACAAGATTTACACTCACG 59.076 41.667 0.00 0.00 0.00 4.35
1831 2344 1.338200 CCTGCTGTAACTGACTCACCC 60.338 57.143 0.00 0.00 0.00 4.61
1834 2347 1.895798 CTCCCTGCTGTAACTGACTCA 59.104 52.381 0.00 0.00 0.00 3.41
1836 2349 1.896465 GACTCCCTGCTGTAACTGACT 59.104 52.381 0.00 0.00 0.00 3.41
1839 2352 2.625737 CATGACTCCCTGCTGTAACTG 58.374 52.381 0.00 0.00 0.00 3.16
1854 2367 2.271800 CCCAGAACGAAGTAGCATGAC 58.728 52.381 0.00 0.00 45.00 3.06
1867 2380 1.244816 GCCAACACCTAACCCAGAAC 58.755 55.000 0.00 0.00 0.00 3.01
1868 2381 0.847373 TGCCAACACCTAACCCAGAA 59.153 50.000 0.00 0.00 0.00 3.02
1892 2417 0.260816 TCCCGTATCTGGCTGTAGGT 59.739 55.000 0.00 0.00 0.00 3.08
1893 2418 1.633774 ATCCCGTATCTGGCTGTAGG 58.366 55.000 0.00 0.00 0.00 3.18
1895 2420 1.691976 CCAATCCCGTATCTGGCTGTA 59.308 52.381 0.00 0.00 0.00 2.74
1896 2421 0.469917 CCAATCCCGTATCTGGCTGT 59.530 55.000 0.00 0.00 0.00 4.40
1897 2422 0.758734 TCCAATCCCGTATCTGGCTG 59.241 55.000 0.00 0.00 0.00 4.85
1898 2423 0.759346 GTCCAATCCCGTATCTGGCT 59.241 55.000 0.00 0.00 0.00 4.75
1899 2424 0.250338 GGTCCAATCCCGTATCTGGC 60.250 60.000 0.00 0.00 0.00 4.85
1900 2425 1.128200 TGGTCCAATCCCGTATCTGG 58.872 55.000 0.00 0.00 0.00 3.86
1903 2428 1.337823 CCGATGGTCCAATCCCGTATC 60.338 57.143 0.00 0.00 0.00 2.24
1904 2429 0.685097 CCGATGGTCCAATCCCGTAT 59.315 55.000 0.00 0.00 0.00 3.06
1905 2430 0.688418 ACCGATGGTCCAATCCCGTA 60.688 55.000 0.00 0.00 0.00 4.02
1907 2432 0.814010 GAACCGATGGTCCAATCCCG 60.814 60.000 0.00 0.00 33.12 5.14
1911 2436 4.884668 ATATACGAACCGATGGTCCAAT 57.115 40.909 0.00 0.00 33.12 3.16
1912 2437 5.988310 ATATATACGAACCGATGGTCCAA 57.012 39.130 0.00 0.00 33.12 3.53
1913 2438 5.988310 AATATATACGAACCGATGGTCCA 57.012 39.130 0.00 0.00 33.12 4.02
1914 2439 7.093322 ACTAATATATACGAACCGATGGTCC 57.907 40.000 0.00 0.00 33.12 4.46
1915 2440 9.102757 TCTACTAATATATACGAACCGATGGTC 57.897 37.037 0.00 0.00 33.12 4.02
1916 2441 9.107177 CTCTACTAATATATACGAACCGATGGT 57.893 37.037 0.00 0.00 37.65 3.55
1917 2442 9.107177 ACTCTACTAATATATACGAACCGATGG 57.893 37.037 0.00 0.00 0.00 3.51
1980 2516 2.569059 CTAGTCAAGCATGTCCCATGG 58.431 52.381 4.14 4.14 0.00 3.66
1982 2518 2.481441 TCCTAGTCAAGCATGTCCCAT 58.519 47.619 0.00 0.00 0.00 4.00
2001 2537 7.689812 CGAGACACACAATTTCATCTGTTAATC 59.310 37.037 0.00 0.00 0.00 1.75
2027 2563 3.801594 CCAATGTGTGTGGTTTAACAAGC 59.198 43.478 0.00 0.00 0.00 4.01
2094 2646 0.817654 TAGGCTGTCATGACTCACCG 59.182 55.000 25.55 10.46 0.00 4.94
2106 2658 9.702253 ATATAATAGCAGTGTATAGTAGGCTGT 57.298 33.333 0.00 0.00 33.10 4.40
2158 2719 8.911965 TCATAAAAGCTATTTCCATTATGCACA 58.088 29.630 0.00 0.00 0.00 4.57
2181 2742 9.865321 CCAGATTCAAATTGTTCACTAATTCAT 57.135 29.630 0.00 0.00 0.00 2.57
2191 2752 6.421801 CAGGTTCAACCAGATTCAAATTGTTC 59.578 38.462 9.90 0.00 41.95 3.18
2198 2759 3.228188 AGCAGGTTCAACCAGATTCAA 57.772 42.857 9.90 0.00 41.95 2.69
2209 2770 1.656587 ATCCACCACTAGCAGGTTCA 58.343 50.000 4.78 0.00 37.23 3.18
2214 2775 6.488006 AGCATAAATAAATCCACCACTAGCAG 59.512 38.462 0.00 0.00 0.00 4.24
2249 2810 5.924475 TCACAGCTAAAAGACAAAGCTAC 57.076 39.130 0.00 0.00 44.58 3.58
2292 2853 3.404869 AGTGGGACTAGATGATGGACA 57.595 47.619 0.00 0.00 0.00 4.02
2307 2868 3.520569 CCGCCAAAAATTATGAAGTGGG 58.479 45.455 0.00 0.00 0.00 4.61
2333 3019 9.995003 AAGCCATAATTTCAGACAATGTAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
2334 3020 9.638239 GAAGCCATAATTTCAGACAATGTAAAA 57.362 29.630 0.00 0.00 0.00 1.52
2482 3203 3.784338 ACATGTGCAAACCAAAGAAGTG 58.216 40.909 0.00 0.00 0.00 3.16
2483 3204 4.470334 AACATGTGCAAACCAAAGAAGT 57.530 36.364 0.00 0.00 0.00 3.01
2486 3207 3.931468 CACAAACATGTGCAAACCAAAGA 59.069 39.130 0.00 0.00 32.72 2.52
2487 3208 3.063725 CCACAAACATGTGCAAACCAAAG 59.936 43.478 0.00 0.00 38.40 2.77
2491 3212 2.593346 TCCACAAACATGTGCAAACC 57.407 45.000 0.00 0.00 38.40 3.27
2492 3213 2.284952 GCTTCCACAAACATGTGCAAAC 59.715 45.455 0.00 0.00 38.40 2.93
2497 3218 6.479660 AGTTAAATTGCTTCCACAAACATGTG 59.520 34.615 0.00 2.03 39.37 3.21
2498 3219 6.581712 AGTTAAATTGCTTCCACAAACATGT 58.418 32.000 0.00 0.00 32.27 3.21
2499 3220 8.081633 TCTAGTTAAATTGCTTCCACAAACATG 58.918 33.333 0.00 0.00 32.27 3.21
2500 3221 8.177119 TCTAGTTAAATTGCTTCCACAAACAT 57.823 30.769 0.00 0.00 32.27 2.71
2501 3222 7.575414 TCTAGTTAAATTGCTTCCACAAACA 57.425 32.000 0.00 0.00 32.27 2.83
2502 3223 9.129209 GAATCTAGTTAAATTGCTTCCACAAAC 57.871 33.333 0.00 0.00 32.27 2.93
2503 3224 9.077885 AGAATCTAGTTAAATTGCTTCCACAAA 57.922 29.630 0.00 0.00 32.27 2.83
2504 3225 8.635765 AGAATCTAGTTAAATTGCTTCCACAA 57.364 30.769 0.00 0.00 0.00 3.33
2505 3226 9.162764 GTAGAATCTAGTTAAATTGCTTCCACA 57.837 33.333 0.00 0.00 0.00 4.17
2506 3227 9.162764 TGTAGAATCTAGTTAAATTGCTTCCAC 57.837 33.333 0.00 0.00 0.00 4.02
2507 3228 9.905713 ATGTAGAATCTAGTTAAATTGCTTCCA 57.094 29.630 0.00 0.00 0.00 3.53
2511 3232 8.624776 GCCAATGTAGAATCTAGTTAAATTGCT 58.375 33.333 0.00 0.00 0.00 3.91
2512 3233 7.862873 GGCCAATGTAGAATCTAGTTAAATTGC 59.137 37.037 0.00 0.00 0.00 3.56
2513 3234 8.352942 GGGCCAATGTAGAATCTAGTTAAATTG 58.647 37.037 4.39 0.00 0.00 2.32
2514 3235 7.228706 CGGGCCAATGTAGAATCTAGTTAAATT 59.771 37.037 4.39 0.00 0.00 1.82
2515 3236 6.710744 CGGGCCAATGTAGAATCTAGTTAAAT 59.289 38.462 4.39 0.00 0.00 1.40
2516 3237 6.053005 CGGGCCAATGTAGAATCTAGTTAAA 58.947 40.000 4.39 0.00 0.00 1.52
2517 3238 5.607477 CGGGCCAATGTAGAATCTAGTTAA 58.393 41.667 4.39 0.00 0.00 2.01
2518 3239 4.502604 GCGGGCCAATGTAGAATCTAGTTA 60.503 45.833 4.39 0.00 0.00 2.24
2519 3240 3.744530 GCGGGCCAATGTAGAATCTAGTT 60.745 47.826 4.39 0.00 0.00 2.24
2520 3241 2.224305 GCGGGCCAATGTAGAATCTAGT 60.224 50.000 4.39 0.00 0.00 2.57
2521 3242 2.037772 AGCGGGCCAATGTAGAATCTAG 59.962 50.000 4.39 0.00 0.00 2.43
2522 3243 2.047061 AGCGGGCCAATGTAGAATCTA 58.953 47.619 4.39 0.00 0.00 1.98
2523 3244 0.839946 AGCGGGCCAATGTAGAATCT 59.160 50.000 4.39 0.00 0.00 2.40
2524 3245 2.543777 TAGCGGGCCAATGTAGAATC 57.456 50.000 4.39 0.00 0.00 2.52
2525 3246 4.634012 TTATAGCGGGCCAATGTAGAAT 57.366 40.909 4.39 0.00 0.00 2.40
2526 3247 4.634012 ATTATAGCGGGCCAATGTAGAA 57.366 40.909 4.39 0.00 0.00 2.10
2527 3248 5.247564 AGTTATTATAGCGGGCCAATGTAGA 59.752 40.000 4.39 0.00 0.00 2.59
2528 3249 5.488341 AGTTATTATAGCGGGCCAATGTAG 58.512 41.667 4.39 0.00 0.00 2.74
2529 3250 5.492855 AGTTATTATAGCGGGCCAATGTA 57.507 39.130 4.39 0.00 0.00 2.29
2530 3251 4.367039 AGTTATTATAGCGGGCCAATGT 57.633 40.909 4.39 0.00 0.00 2.71
2531 3252 6.622896 GCTTAAGTTATTATAGCGGGCCAATG 60.623 42.308 4.39 0.00 0.00 2.82
2532 3253 5.414765 GCTTAAGTTATTATAGCGGGCCAAT 59.585 40.000 4.39 0.00 0.00 3.16
2533 3254 4.758165 GCTTAAGTTATTATAGCGGGCCAA 59.242 41.667 4.39 0.00 0.00 4.52
2534 3255 4.041198 AGCTTAAGTTATTATAGCGGGCCA 59.959 41.667 4.39 0.00 33.73 5.36
2535 3256 4.576879 AGCTTAAGTTATTATAGCGGGCC 58.423 43.478 4.02 0.00 33.73 5.80
2536 3257 7.095270 TCTAAGCTTAAGTTATTATAGCGGGC 58.905 38.462 7.74 0.00 33.73 6.13
2537 3258 9.654663 AATCTAAGCTTAAGTTATTATAGCGGG 57.345 33.333 7.74 0.00 33.73 6.13
2546 3267 8.844244 CCAGATGCAAATCTAAGCTTAAGTTAT 58.156 33.333 7.74 0.00 0.00 1.89
2547 3268 7.283127 CCCAGATGCAAATCTAAGCTTAAGTTA 59.717 37.037 7.74 1.51 0.00 2.24
2548 3269 6.096001 CCCAGATGCAAATCTAAGCTTAAGTT 59.904 38.462 7.74 2.63 0.00 2.66
2549 3270 5.591877 CCCAGATGCAAATCTAAGCTTAAGT 59.408 40.000 7.74 0.00 0.00 2.24
2550 3271 5.591877 ACCCAGATGCAAATCTAAGCTTAAG 59.408 40.000 7.74 0.00 0.00 1.85
2551 3272 5.509498 ACCCAGATGCAAATCTAAGCTTAA 58.491 37.500 7.74 0.00 0.00 1.85
2552 3273 5.116084 ACCCAGATGCAAATCTAAGCTTA 57.884 39.130 5.94 5.94 0.00 3.09
2553 3274 3.973425 ACCCAGATGCAAATCTAAGCTT 58.027 40.909 3.48 3.48 0.00 3.74
2554 3275 3.659183 ACCCAGATGCAAATCTAAGCT 57.341 42.857 0.00 0.00 0.00 3.74
2555 3276 4.725790 AAACCCAGATGCAAATCTAAGC 57.274 40.909 0.00 0.00 0.00 3.09
2606 3327 8.852671 AAGGAATTAATAACCAATGATTCCCA 57.147 30.769 12.21 0.00 39.60 4.37
2673 3395 5.190528 AGAGATATGGAGCAGAAGGTTGAAA 59.809 40.000 0.00 0.00 0.00 2.69
2699 3421 8.410141 CCTAGCTATTACCAGAGTTATATGCTC 58.590 40.741 0.00 2.09 31.10 4.26
2703 3425 8.846423 ATGCCTAGCTATTACCAGAGTTATAT 57.154 34.615 0.00 0.00 0.00 0.86
2711 3433 7.646548 TGATACTATGCCTAGCTATTACCAG 57.353 40.000 0.00 0.00 0.00 4.00
2795 3525 2.450476 CTTCCCAAGGGTGAAGAATGG 58.550 52.381 4.80 0.00 40.30 3.16
3062 3802 9.869757 GCAAACAAAAGGTGGTTATCTATAATT 57.130 29.630 0.00 0.00 33.71 1.40
3063 3803 9.030452 TGCAAACAAAAGGTGGTTATCTATAAT 57.970 29.630 0.00 0.00 33.71 1.28
3064 3804 8.410673 TGCAAACAAAAGGTGGTTATCTATAA 57.589 30.769 0.00 0.00 33.71 0.98
3122 3862 0.621571 TGGCCCTGCAGAGAAGGTAT 60.622 55.000 17.39 0.00 32.45 2.73
3185 3925 1.750193 CAAGGGCTTCGGCAAAGATA 58.250 50.000 2.49 0.00 43.96 1.98
3260 4000 1.871039 GTGCTTTGTTTCTAGTCGGCA 59.129 47.619 0.00 0.00 0.00 5.69
3279 4020 1.815003 GTATGCTCCTTGCTTGCAAGT 59.185 47.619 26.55 14.81 43.37 3.16
3300 4041 6.150976 TCAAACAGAATACAATGATGGACCAC 59.849 38.462 0.00 0.00 0.00 4.16
3301 4042 6.244654 TCAAACAGAATACAATGATGGACCA 58.755 36.000 0.00 0.00 0.00 4.02
3395 4138 6.375455 ACCACATTATGTTCCTTGATCTGTTC 59.625 38.462 0.00 0.00 0.00 3.18
3396 4139 6.248433 ACCACATTATGTTCCTTGATCTGTT 58.752 36.000 0.00 0.00 0.00 3.16
3446 4193 7.390440 CCGGATAGAATAAAATTACAGATGGCA 59.610 37.037 0.00 0.00 0.00 4.92
3469 4216 2.175811 GTAGCTTTGCGTTGCCGG 59.824 61.111 0.00 0.00 33.68 6.13
3562 4311 4.436050 AGCTTTGCTTATTCGTTCATCACG 60.436 41.667 0.00 0.00 43.33 4.35
3571 4328 5.593010 ACTAGGTCTAGCTTTGCTTATTCG 58.407 41.667 0.00 0.00 40.44 3.34
3609 4366 7.173907 ACAAAATGAATCTAGACACAGGAGTTG 59.826 37.037 0.00 4.87 0.00 3.16
3682 4439 9.040259 ACCAGTGTGATTGATACAGCTATATAT 57.960 33.333 0.00 0.00 0.00 0.86
3699 5698 4.036262 GCAAACTATCAAACACCAGTGTGA 59.964 41.667 3.80 0.00 45.69 3.58
3770 5769 2.890945 GCCCTACCAACACAACAAGAAT 59.109 45.455 0.00 0.00 0.00 2.40
3775 5774 0.533308 GTCGCCCTACCAACACAACA 60.533 55.000 0.00 0.00 0.00 3.33
3785 5784 0.243095 AGTTCGTTCAGTCGCCCTAC 59.757 55.000 0.00 0.00 0.00 3.18
3791 5798 1.148310 ATGCCAAGTTCGTTCAGTCG 58.852 50.000 0.00 0.00 0.00 4.18
3794 5801 5.005779 GTGAGTATATGCCAAGTTCGTTCAG 59.994 44.000 0.00 0.00 0.00 3.02
3802 5809 4.384208 GGGACAAGTGAGTATATGCCAAGT 60.384 45.833 0.00 0.00 0.00 3.16
3803 5810 4.130118 GGGACAAGTGAGTATATGCCAAG 58.870 47.826 0.00 0.00 0.00 3.61
3805 5812 3.111484 TGGGACAAGTGAGTATATGCCA 58.889 45.455 0.00 0.00 31.92 4.92
3806 5813 3.838244 TGGGACAAGTGAGTATATGCC 57.162 47.619 0.00 0.00 31.92 4.40
3822 5829 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
3838 5845 9.865321 GTACATACTCCTATAGTGTCAAAAACA 57.135 33.333 0.00 0.00 39.39 2.83
3839 5846 9.310716 GGTACATACTCCTATAGTGTCAAAAAC 57.689 37.037 0.00 0.00 39.39 2.43
3840 5847 9.038072 TGGTACATACTCCTATAGTGTCAAAAA 57.962 33.333 0.00 0.00 39.39 1.94
3841 5848 8.598202 TGGTACATACTCCTATAGTGTCAAAA 57.402 34.615 0.00 0.00 39.39 2.44
3861 5868 7.390718 ACAGATCCAAGAAAACAACTATGGTAC 59.609 37.037 0.00 0.00 0.00 3.34
3862 5869 7.390440 CACAGATCCAAGAAAACAACTATGGTA 59.610 37.037 0.00 0.00 0.00 3.25
3863 5870 6.207417 CACAGATCCAAGAAAACAACTATGGT 59.793 38.462 0.00 0.00 0.00 3.55
3864 5871 6.207417 ACACAGATCCAAGAAAACAACTATGG 59.793 38.462 0.00 0.00 0.00 2.74
3865 5872 7.206981 ACACAGATCCAAGAAAACAACTATG 57.793 36.000 0.00 0.00 0.00 2.23
3926 5989 1.537202 GCTCAAAGCTCAAACACGGAT 59.463 47.619 0.00 0.00 38.45 4.18
3928 5991 0.662619 TGCTCAAAGCTCAAACACGG 59.337 50.000 0.11 0.00 42.97 4.94
3979 6042 9.953697 CTCAGTCTCAATAAGTTGTATAGGTAC 57.046 37.037 0.00 0.00 36.69 3.34
4002 6065 4.283722 GGGTACTTTTCTTCTCCAGTCTCA 59.716 45.833 0.00 0.00 0.00 3.27
4003 6066 4.528987 AGGGTACTTTTCTTCTCCAGTCTC 59.471 45.833 0.00 0.00 0.00 3.36
4004 6067 4.494591 AGGGTACTTTTCTTCTCCAGTCT 58.505 43.478 0.00 0.00 0.00 3.24
4005 6068 4.893829 AGGGTACTTTTCTTCTCCAGTC 57.106 45.455 0.00 0.00 0.00 3.51
4006 6069 5.652324 TCTAGGGTACTTTTCTTCTCCAGT 58.348 41.667 0.00 0.00 0.00 4.00
4007 6070 6.607004 TTCTAGGGTACTTTTCTTCTCCAG 57.393 41.667 0.00 0.00 0.00 3.86
4048 6111 4.039124 GGAAAGGACATTGCTTTTTCTCCA 59.961 41.667 0.00 0.00 38.16 3.86
4057 6120 2.564062 CAACCATGGAAAGGACATTGCT 59.436 45.455 21.47 0.00 0.00 3.91
4059 6122 4.751060 CATCAACCATGGAAAGGACATTG 58.249 43.478 21.47 9.94 0.00 2.82
4094 6159 5.501156 GGGAAGATAACAGTGAGGTGAATT 58.499 41.667 0.00 0.00 0.00 2.17
4105 6170 1.017387 GCCTTGCGGGAAGATAACAG 58.983 55.000 11.11 0.00 37.23 3.16
4127 6193 1.000359 CAAAGGGTGGGGGCTAAGG 60.000 63.158 0.00 0.00 0.00 2.69
4129 6195 3.186305 CCAAAGGGTGGGGGCTAA 58.814 61.111 0.00 0.00 44.64 3.09
4143 6209 0.846427 ATGGGAGGAGAGTTGGCCAA 60.846 55.000 16.05 16.05 0.00 4.52
4149 6215 1.364328 AGGAGTGATGGGAGGAGAGTT 59.636 52.381 0.00 0.00 0.00 3.01
4152 6218 1.010795 TGAGGAGTGATGGGAGGAGA 58.989 55.000 0.00 0.00 0.00 3.71
4160 6226 2.027837 TGACATGGTGTGAGGAGTGATG 60.028 50.000 0.00 0.00 0.00 3.07
4166 6232 1.488705 GGGGTGACATGGTGTGAGGA 61.489 60.000 0.00 0.00 0.00 3.71
4189 6256 0.039618 GGGGAGAAGGTGCAAATGGA 59.960 55.000 0.00 0.00 0.00 3.41
4193 6260 1.228124 CACGGGGAGAAGGTGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
4195 6262 2.525629 TCACGGGGAGAAGGTGCA 60.526 61.111 0.00 0.00 0.00 4.57
4200 6267 1.817209 GCTAGGTCACGGGGAGAAG 59.183 63.158 0.00 0.00 0.00 2.85
4222 6289 0.921347 GTACGTTGAGGCTATGCGTG 59.079 55.000 16.34 0.00 37.05 5.34
4223 6290 0.815734 AGTACGTTGAGGCTATGCGT 59.184 50.000 12.82 12.82 39.23 5.24
4244 6311 0.392998 GACACATGTGGCCTGTAGGG 60.393 60.000 28.64 0.77 35.18 3.53
4245 6312 0.615331 AGACACATGTGGCCTGTAGG 59.385 55.000 28.23 0.00 40.19 3.18
4246 6313 3.610040 TTAGACACATGTGGCCTGTAG 57.390 47.619 28.23 0.59 40.19 2.74
4247 6314 4.323417 CTTTTAGACACATGTGGCCTGTA 58.677 43.478 28.23 11.56 40.19 2.74
4248 6315 2.949177 TTTAGACACATGTGGCCTGT 57.051 45.000 28.23 12.68 40.19 4.00
4249 6316 3.837213 CTTTTAGACACATGTGGCCTG 57.163 47.619 28.23 10.02 40.19 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.