Multiple sequence alignment - TraesCS1D01G016800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G016800 chr1D 100.000 6373 0 0 1 6373 7588962 7582590 0.000000e+00 11769.0
1 TraesCS1D01G016800 chr1D 88.462 1612 157 16 4184 5785 7076804 7078396 0.000000e+00 1919.0
2 TraesCS1D01G016800 chr1D 88.633 1566 136 24 4293 5846 7443932 7445467 0.000000e+00 1868.0
3 TraesCS1D01G016800 chr1D 87.236 1089 56 30 2892 3924 224142691 224143752 0.000000e+00 1164.0
4 TraesCS1D01G016800 chr1D 86.888 1083 59 37 2890 3936 17252198 17253233 0.000000e+00 1136.0
5 TraesCS1D01G016800 chr1D 81.057 1230 179 38 954 2151 7429773 7430980 0.000000e+00 931.0
6 TraesCS1D01G016800 chr1D 83.141 955 140 9 970 1913 7073545 7074489 0.000000e+00 852.0
7 TraesCS1D01G016800 chr1D 82.143 812 136 8 1098 1903 38726638 38727446 0.000000e+00 688.0
8 TraesCS1D01G016800 chr1D 90.150 467 27 14 2886 3336 391968723 391968260 1.980000e-164 590.0
9 TraesCS1D01G016800 chr1D 91.254 343 7 4 2885 3206 370217336 370216996 4.530000e-121 446.0
10 TraesCS1D01G016800 chr1D 77.173 771 168 6 1138 1904 39789780 39790546 5.860000e-120 442.0
11 TraesCS1D01G016800 chr1D 82.579 442 61 9 5410 5846 7457579 7458009 6.030000e-100 375.0
12 TraesCS1D01G016800 chr1D 81.206 431 62 13 2467 2892 7443371 7443787 4.760000e-86 329.0
13 TraesCS1D01G016800 chr1D 90.659 182 7 5 2886 3064 7514330 7514504 3.840000e-57 233.0
14 TraesCS1D01G016800 chr1D 84.831 178 17 8 6183 6358 15308228 15308397 3.060000e-38 171.0
15 TraesCS1D01G016800 chr1D 83.420 193 23 7 6187 6373 431805077 431805266 3.060000e-38 171.0
16 TraesCS1D01G016800 chr1D 100.000 28 0 0 2635 2662 7586281 7586254 1.200000e-02 52.8
17 TraesCS1D01G016800 chr1D 100.000 28 0 0 2682 2709 7586328 7586301 1.200000e-02 52.8
18 TraesCS1D01G016800 chr1B 90.431 1578 129 12 4180 5747 9895110 9893545 0.000000e+00 2058.0
19 TraesCS1D01G016800 chr1B 91.140 1456 116 8 4197 5644 9580565 9582015 0.000000e+00 1962.0
20 TraesCS1D01G016800 chr1B 85.424 1722 178 33 359 2061 9578341 9580008 0.000000e+00 1722.0
21 TraesCS1D01G016800 chr1B 89.563 1303 127 6 4262 5560 9493727 9495024 0.000000e+00 1644.0
22 TraesCS1D01G016800 chr1B 82.731 996 156 15 4313 5300 9940536 9939549 0.000000e+00 872.0
23 TraesCS1D01G016800 chr1B 82.934 961 130 20 970 1913 9489869 9490812 0.000000e+00 835.0
24 TraesCS1D01G016800 chr1B 82.397 943 158 6 969 1905 9942311 9941371 0.000000e+00 815.0
25 TraesCS1D01G016800 chr1B 90.879 603 33 7 3591 4176 599244892 599245489 0.000000e+00 789.0
26 TraesCS1D01G016800 chr1B 80.573 978 163 18 948 1911 9899430 9898466 0.000000e+00 728.0
27 TraesCS1D01G016800 chr1B 80.759 395 57 11 2467 2858 9895506 9895128 2.250000e-74 291.0
28 TraesCS1D01G016800 chr1B 89.005 191 11 5 1 190 9575632 9575813 1.790000e-55 228.0
29 TraesCS1D01G016800 chr1B 81.057 227 38 3 2438 2661 9941143 9940919 6.570000e-40 176.0
30 TraesCS1D01G016800 chr1B 80.829 193 17 10 6187 6373 633139928 633139750 4.010000e-27 134.0
31 TraesCS1D01G016800 chr1B 80.435 184 26 4 6190 6368 657346775 657346597 1.440000e-26 132.0
32 TraesCS1D01G016800 chr1B 84.483 116 17 1 5666 5781 9495039 9495153 5.220000e-21 113.0
33 TraesCS1D01G016800 chr1A 92.009 1364 91 11 4185 5539 9091633 9092987 0.000000e+00 1899.0
34 TraesCS1D01G016800 chr1A 88.423 1382 129 19 4184 5560 8668759 8670114 0.000000e+00 1637.0
35 TraesCS1D01G016800 chr1A 87.305 961 114 5 957 1913 9236589 9235633 0.000000e+00 1092.0
36 TraesCS1D01G016800 chr1A 82.249 1183 183 21 4366 5534 9233856 9232687 0.000000e+00 996.0
37 TraesCS1D01G016800 chr1A 83.003 959 133 18 970 1913 8664978 8665921 0.000000e+00 841.0
38 TraesCS1D01G016800 chr1A 83.407 910 133 15 998 1904 9089739 9090633 0.000000e+00 828.0
39 TraesCS1D01G016800 chr1A 81.658 796 130 13 1098 1879 38699269 38700062 0.000000e+00 647.0
40 TraesCS1D01G016800 chr1A 79.829 818 130 19 1099 1903 38712098 38712893 1.200000e-156 564.0
41 TraesCS1D01G016800 chr1A 89.091 220 20 4 5631 5846 9093142 9093361 2.930000e-68 270.0
42 TraesCS1D01G016800 chr1A 86.170 188 26 0 2474 2661 9090857 9091044 3.010000e-48 204.0
43 TraesCS1D01G016800 chr1A 83.696 184 23 5 6187 6364 52241522 52241340 3.950000e-37 167.0
44 TraesCS1D01G016800 chr1A 93.651 63 3 1 6113 6174 9100699 9100761 6.800000e-15 93.5
45 TraesCS1D01G016800 chr2B 89.439 1354 56 22 2891 4177 543169974 543171307 0.000000e+00 1628.0
46 TraesCS1D01G016800 chr2B 90.774 607 33 9 3590 4178 326976945 326976344 0.000000e+00 789.0
47 TraesCS1D01G016800 chr2B 82.199 191 24 6 6187 6373 166665540 166665356 8.550000e-34 156.0
48 TraesCS1D01G016800 chr2B 90.426 94 5 2 3981 4070 759985532 759985439 3.120000e-23 121.0
49 TraesCS1D01G016800 chr2B 79.310 87 13 4 1966 2049 197682774 197682858 8.930000e-04 56.5
50 TraesCS1D01G016800 chr6B 89.179 1340 78 23 2886 4176 142725953 142727274 0.000000e+00 1609.0
51 TraesCS1D01G016800 chr6B 89.084 797 35 9 3424 4177 641247524 641248311 0.000000e+00 942.0
52 TraesCS1D01G016800 chr6B 83.415 205 30 2 3974 4177 618170648 618170447 3.030000e-43 187.0
53 TraesCS1D01G016800 chr6B 78.974 195 28 12 6187 6373 94584630 94584441 3.120000e-23 121.0
54 TraesCS1D01G016800 chr7D 88.538 1108 52 21 2886 3941 425725300 425726384 0.000000e+00 1273.0
55 TraesCS1D01G016800 chr7D 92.837 712 28 19 2886 3589 14186055 14186751 0.000000e+00 1011.0
56 TraesCS1D01G016800 chr7D 93.774 514 26 6 3666 4176 497974552 497974042 0.000000e+00 767.0
57 TraesCS1D01G016800 chr7D 92.802 514 19 8 3666 4176 51785988 51785490 0.000000e+00 728.0
58 TraesCS1D01G016800 chr7D 89.258 512 25 8 2886 3394 115088006 115087522 1.170000e-171 614.0
59 TraesCS1D01G016800 chr7D 92.593 189 8 5 2879 3062 442687903 442687716 3.790000e-67 267.0
60 TraesCS1D01G016800 chr7D 84.896 192 23 4 6187 6373 53277318 53277128 8.430000e-44 189.0
61 TraesCS1D01G016800 chr7D 84.000 100 12 4 2067 2164 353923808 353923905 6.800000e-15 93.5
62 TraesCS1D01G016800 chr7D 83.133 83 13 1 2070 2151 480046157 480046075 2.460000e-09 75.0
63 TraesCS1D01G016800 chr3D 88.209 1111 48 24 2884 3936 614889768 614888683 0.000000e+00 1249.0
64 TraesCS1D01G016800 chr3D 87.309 1111 59 28 2885 3938 6342379 6341294 0.000000e+00 1195.0
65 TraesCS1D01G016800 chr3D 85.543 1086 56 27 2892 3936 511350890 511351915 0.000000e+00 1042.0
66 TraesCS1D01G016800 chr3D 91.576 736 24 23 2886 3589 604635617 604634888 0.000000e+00 981.0
67 TraesCS1D01G016800 chr3D 91.063 649 28 13 2886 3529 594518963 594519586 0.000000e+00 850.0
68 TraesCS1D01G016800 chr3D 94.216 536 14 5 3642 4176 511351737 511352256 0.000000e+00 802.0
69 TraesCS1D01G016800 chr3D 92.634 543 26 11 3642 4177 574975347 574974812 0.000000e+00 769.0
70 TraesCS1D01G016800 chr3D 93.886 507 27 4 3673 4177 15210604 15211108 0.000000e+00 761.0
71 TraesCS1D01G016800 chr3D 92.642 530 21 8 3666 4177 6341846 6342375 0.000000e+00 747.0
72 TraesCS1D01G016800 chr3D 87.109 543 21 13 2878 3394 29617067 29616548 2.580000e-158 569.0
73 TraesCS1D01G016800 chr3D 93.143 175 8 2 2885 3059 384564529 384564699 2.950000e-63 254.0
74 TraesCS1D01G016800 chr4D 87.408 1088 69 31 2886 3936 437523567 437522511 0.000000e+00 1188.0
75 TraesCS1D01G016800 chr4D 88.450 1039 46 30 2886 3886 401772740 401771738 0.000000e+00 1186.0
76 TraesCS1D01G016800 chr4D 86.875 1120 59 38 2878 3941 4740523 4741610 0.000000e+00 1173.0
77 TraesCS1D01G016800 chr4D 87.271 1092 57 29 2886 3942 509076502 509077546 0.000000e+00 1171.0
78 TraesCS1D01G016800 chr4D 92.015 526 16 7 2886 3388 85853607 85854129 0.000000e+00 715.0
79 TraesCS1D01G016800 chr4D 90.625 544 21 14 2878 3394 49297806 49298346 0.000000e+00 695.0
80 TraesCS1D01G016800 chrUn 86.514 1090 61 38 2886 3941 132054905 132053868 0.000000e+00 1120.0
81 TraesCS1D01G016800 chrUn 87.040 679 50 14 2892 3565 17112933 17112288 0.000000e+00 732.0
82 TraesCS1D01G016800 chrUn 91.304 483 24 14 2886 3363 33019996 33020465 1.500000e-180 643.0
83 TraesCS1D01G016800 chrUn 88.618 492 31 13 2886 3353 89632980 89632490 5.540000e-160 575.0
84 TraesCS1D01G016800 chrUn 88.032 493 33 11 2886 3353 89599943 89599452 1.550000e-155 560.0
85 TraesCS1D01G016800 chrUn 85.398 226 18 7 2880 3100 260696935 260696720 2.990000e-53 220.0
86 TraesCS1D01G016800 chrUn 85.398 226 18 7 2880 3100 285569196 285569411 2.990000e-53 220.0
87 TraesCS1D01G016800 chrUn 80.303 132 17 6 6187 6312 22157766 22157638 2.450000e-14 91.6
88 TraesCS1D01G016800 chr2D 85.754 1088 58 26 2885 3936 6097042 6096016 0.000000e+00 1061.0
89 TraesCS1D01G016800 chr2D 89.583 192 13 6 2886 3070 544608835 544609026 2.970000e-58 237.0
90 TraesCS1D01G016800 chr2D 84.456 193 23 5 6187 6373 69266888 69267079 3.920000e-42 183.0
91 TraesCS1D01G016800 chr2D 81.437 167 21 6 6188 6353 73218994 73219151 1.860000e-25 128.0
92 TraesCS1D01G016800 chr2D 74.809 262 46 8 1926 2172 139025478 139025734 4.070000e-17 100.0
93 TraesCS1D01G016800 chr5D 93.388 726 20 12 2887 3589 505913989 505914709 0.000000e+00 1050.0
94 TraesCS1D01G016800 chr5D 92.960 554 17 7 3642 4177 505914886 505915435 0.000000e+00 787.0
95 TraesCS1D01G016800 chr5D 94.815 405 15 5 3666 4069 533554049 533553650 1.510000e-175 627.0
96 TraesCS1D01G016800 chr5D 90.110 91 7 2 6273 6362 239275730 239275641 4.040000e-22 117.0
97 TraesCS1D01G016800 chr6D 92.557 524 19 10 3672 4177 473112631 473113152 0.000000e+00 734.0
98 TraesCS1D01G016800 chr6D 92.203 513 25 12 2885 3394 263359014 263358514 0.000000e+00 712.0
99 TraesCS1D01G016800 chr6D 90.019 521 37 13 2886 3394 365589722 365589205 0.000000e+00 660.0
100 TraesCS1D01G016800 chr6D 88.931 524 31 16 2886 3394 382581088 382581599 7.020000e-174 621.0
101 TraesCS1D01G016800 chr5A 89.346 535 24 19 2871 3382 368018261 368017737 5.390000e-180 641.0
102 TraesCS1D01G016800 chr5A 85.165 182 20 5 6187 6362 314669950 314670130 5.080000e-41 180.0
103 TraesCS1D01G016800 chr2A 90.833 240 15 2 3935 4174 710005374 710005606 1.330000e-81 315.0
104 TraesCS1D01G016800 chr2A 86.979 192 19 4 6187 6373 69311008 69311198 1.800000e-50 211.0
105 TraesCS1D01G016800 chr2A 91.304 46 3 1 2243 2288 33271985 33271941 1.920000e-05 62.1
106 TraesCS1D01G016800 chr5B 81.383 376 65 3 1458 1829 486726915 486726541 1.040000e-77 302.0
107 TraesCS1D01G016800 chr5B 86.034 179 20 3 6187 6360 264288501 264288679 3.030000e-43 187.0
108 TraesCS1D01G016800 chr5B 80.503 159 19 9 6216 6368 141455249 141455401 1.880000e-20 111.0
109 TraesCS1D01G016800 chr5B 88.636 44 4 1 2187 2230 580686023 580685981 1.200000e-02 52.8
110 TraesCS1D01G016800 chr4A 85.561 187 22 5 6187 6373 352481953 352481772 2.350000e-44 191.0
111 TraesCS1D01G016800 chr7B 84.530 181 23 3 6187 6362 107645164 107645344 2.360000e-39 174.0
112 TraesCS1D01G016800 chr7B 79.327 208 31 6 1966 2161 156706790 156706583 1.110000e-27 135.0
113 TraesCS1D01G016800 chr7B 95.556 45 2 0 2070 2114 506017025 506016981 8.860000e-09 73.1
114 TraesCS1D01G016800 chr7A 78.378 222 37 6 1951 2161 202747377 202747156 4.010000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G016800 chr1D 7582590 7588962 6372 True 3958.200000 11769 100.000000 1 6373 3 chr1D.!!$R3 6372
1 TraesCS1D01G016800 chr1D 7073545 7078396 4851 False 1385.500000 1919 85.801500 970 5785 2 chr1D.!!$F10 4815
2 TraesCS1D01G016800 chr1D 224142691 224143752 1061 False 1164.000000 1164 87.236000 2892 3924 1 chr1D.!!$F8 1032
3 TraesCS1D01G016800 chr1D 17252198 17253233 1035 False 1136.000000 1136 86.888000 2890 3936 1 chr1D.!!$F5 1046
4 TraesCS1D01G016800 chr1D 7443371 7445467 2096 False 1098.500000 1868 84.919500 2467 5846 2 chr1D.!!$F11 3379
5 TraesCS1D01G016800 chr1D 7429773 7430980 1207 False 931.000000 931 81.057000 954 2151 1 chr1D.!!$F1 1197
6 TraesCS1D01G016800 chr1D 38726638 38727446 808 False 688.000000 688 82.143000 1098 1903 1 chr1D.!!$F6 805
7 TraesCS1D01G016800 chr1D 39789780 39790546 766 False 442.000000 442 77.173000 1138 1904 1 chr1D.!!$F7 766
8 TraesCS1D01G016800 chr1B 9575632 9582015 6383 False 1304.000000 1962 88.523000 1 5644 3 chr1B.!!$F3 5643
9 TraesCS1D01G016800 chr1B 9893545 9899430 5885 True 1025.666667 2058 83.921000 948 5747 3 chr1B.!!$R3 4799
10 TraesCS1D01G016800 chr1B 9489869 9495153 5284 False 864.000000 1644 85.660000 970 5781 3 chr1B.!!$F2 4811
11 TraesCS1D01G016800 chr1B 599244892 599245489 597 False 789.000000 789 90.879000 3591 4176 1 chr1B.!!$F1 585
12 TraesCS1D01G016800 chr1B 9939549 9942311 2762 True 621.000000 872 82.061667 969 5300 3 chr1B.!!$R4 4331
13 TraesCS1D01G016800 chr1A 8664978 8670114 5136 False 1239.000000 1637 85.713000 970 5560 2 chr1A.!!$F4 4590
14 TraesCS1D01G016800 chr1A 9232687 9236589 3902 True 1044.000000 1092 84.777000 957 5534 2 chr1A.!!$R2 4577
15 TraesCS1D01G016800 chr1A 9089739 9093361 3622 False 800.250000 1899 87.669250 998 5846 4 chr1A.!!$F5 4848
16 TraesCS1D01G016800 chr1A 38699269 38700062 793 False 647.000000 647 81.658000 1098 1879 1 chr1A.!!$F2 781
17 TraesCS1D01G016800 chr1A 38712098 38712893 795 False 564.000000 564 79.829000 1099 1903 1 chr1A.!!$F3 804
18 TraesCS1D01G016800 chr2B 543169974 543171307 1333 False 1628.000000 1628 89.439000 2891 4177 1 chr2B.!!$F2 1286
19 TraesCS1D01G016800 chr2B 326976344 326976945 601 True 789.000000 789 90.774000 3590 4178 1 chr2B.!!$R2 588
20 TraesCS1D01G016800 chr6B 142725953 142727274 1321 False 1609.000000 1609 89.179000 2886 4176 1 chr6B.!!$F1 1290
21 TraesCS1D01G016800 chr6B 641247524 641248311 787 False 942.000000 942 89.084000 3424 4177 1 chr6B.!!$F2 753
22 TraesCS1D01G016800 chr7D 425725300 425726384 1084 False 1273.000000 1273 88.538000 2886 3941 1 chr7D.!!$F3 1055
23 TraesCS1D01G016800 chr7D 14186055 14186751 696 False 1011.000000 1011 92.837000 2886 3589 1 chr7D.!!$F1 703
24 TraesCS1D01G016800 chr7D 497974042 497974552 510 True 767.000000 767 93.774000 3666 4176 1 chr7D.!!$R6 510
25 TraesCS1D01G016800 chr3D 614888683 614889768 1085 True 1249.000000 1249 88.209000 2884 3936 1 chr3D.!!$R5 1052
26 TraesCS1D01G016800 chr3D 6341294 6342379 1085 True 1195.000000 1195 87.309000 2885 3938 1 chr3D.!!$R1 1053
27 TraesCS1D01G016800 chr3D 604634888 604635617 729 True 981.000000 981 91.576000 2886 3589 1 chr3D.!!$R4 703
28 TraesCS1D01G016800 chr3D 511350890 511352256 1366 False 922.000000 1042 89.879500 2892 4176 2 chr3D.!!$F5 1284
29 TraesCS1D01G016800 chr3D 594518963 594519586 623 False 850.000000 850 91.063000 2886 3529 1 chr3D.!!$F4 643
30 TraesCS1D01G016800 chr3D 574974812 574975347 535 True 769.000000 769 92.634000 3642 4177 1 chr3D.!!$R3 535
31 TraesCS1D01G016800 chr3D 15210604 15211108 504 False 761.000000 761 93.886000 3673 4177 1 chr3D.!!$F2 504
32 TraesCS1D01G016800 chr3D 6341846 6342375 529 False 747.000000 747 92.642000 3666 4177 1 chr3D.!!$F1 511
33 TraesCS1D01G016800 chr3D 29616548 29617067 519 True 569.000000 569 87.109000 2878 3394 1 chr3D.!!$R2 516
34 TraesCS1D01G016800 chr4D 437522511 437523567 1056 True 1188.000000 1188 87.408000 2886 3936 1 chr4D.!!$R2 1050
35 TraesCS1D01G016800 chr4D 401771738 401772740 1002 True 1186.000000 1186 88.450000 2886 3886 1 chr4D.!!$R1 1000
36 TraesCS1D01G016800 chr4D 4740523 4741610 1087 False 1173.000000 1173 86.875000 2878 3941 1 chr4D.!!$F1 1063
37 TraesCS1D01G016800 chr4D 509076502 509077546 1044 False 1171.000000 1171 87.271000 2886 3942 1 chr4D.!!$F4 1056
38 TraesCS1D01G016800 chr4D 85853607 85854129 522 False 715.000000 715 92.015000 2886 3388 1 chr4D.!!$F3 502
39 TraesCS1D01G016800 chr4D 49297806 49298346 540 False 695.000000 695 90.625000 2878 3394 1 chr4D.!!$F2 516
40 TraesCS1D01G016800 chrUn 132053868 132054905 1037 True 1120.000000 1120 86.514000 2886 3941 1 chrUn.!!$R5 1055
41 TraesCS1D01G016800 chrUn 17112288 17112933 645 True 732.000000 732 87.040000 2892 3565 1 chrUn.!!$R1 673
42 TraesCS1D01G016800 chr2D 6096016 6097042 1026 True 1061.000000 1061 85.754000 2885 3936 1 chr2D.!!$R1 1051
43 TraesCS1D01G016800 chr5D 505913989 505915435 1446 False 918.500000 1050 93.174000 2887 4177 2 chr5D.!!$F1 1290
44 TraesCS1D01G016800 chr6D 473112631 473113152 521 False 734.000000 734 92.557000 3672 4177 1 chr6D.!!$F2 505
45 TraesCS1D01G016800 chr6D 263358514 263359014 500 True 712.000000 712 92.203000 2885 3394 1 chr6D.!!$R1 509
46 TraesCS1D01G016800 chr6D 365589205 365589722 517 True 660.000000 660 90.019000 2886 3394 1 chr6D.!!$R2 508
47 TraesCS1D01G016800 chr6D 382581088 382581599 511 False 621.000000 621 88.931000 2886 3394 1 chr6D.!!$F1 508
48 TraesCS1D01G016800 chr5A 368017737 368018261 524 True 641.000000 641 89.346000 2871 3382 1 chr5A.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 2822 0.034670 GTCCAGGCTTTCTCATGGCT 60.035 55.0 0.00 0.0 39.75 4.75 F
1131 3518 0.122435 TGGACATCCCCTACCCCTTT 59.878 55.0 0.00 0.0 34.29 3.11 F
1617 4019 0.902984 TGATGGAGTACAGCCCGTGT 60.903 55.0 0.00 0.0 43.86 4.49 F
2586 9334 0.613260 TGCAGGTTATCAGAGCCGTT 59.387 50.0 0.00 0.0 0.00 4.44 F
4268 13150 0.944386 ATGTGCTCGCGTTTCAAACT 59.056 45.0 5.77 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 4007 0.455633 CGTAGTCACACGGGCTGTAC 60.456 60.000 0.00 0.00 38.26 2.90 R
2586 9334 2.037902 TGCATCGTTCAGTTCTTGGGTA 59.962 45.455 0.00 0.00 0.00 3.69 R
3006 9809 2.268920 GAGTCCAATCGGCCTGCA 59.731 61.111 0.00 0.00 0.00 4.41 R
4453 13401 0.611714 TCGGTAAAAGTCTCTGGCCC 59.388 55.000 0.00 0.00 0.00 5.80 R
5875 14963 0.033090 GTATGGCGCCCTAGTACACC 59.967 60.000 26.77 1.14 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 5.038033 GTGCAACAATAAGAAAACGACCAA 58.962 37.500 0.00 0.00 36.32 3.67
64 66 1.210967 AGAAAACGACCAACCAGGACA 59.789 47.619 0.00 0.00 41.22 4.02
70 72 1.338674 CGACCAACCAGGACATAGCAA 60.339 52.381 0.00 0.00 41.22 3.91
71 73 2.359900 GACCAACCAGGACATAGCAAG 58.640 52.381 0.00 0.00 41.22 4.01
74 76 2.290260 CCAACCAGGACATAGCAAGTCA 60.290 50.000 0.00 0.00 41.22 3.41
113 115 4.730487 GTGCTGGCACTCCTTGAT 57.270 55.556 17.19 0.00 43.12 2.57
124 126 3.244044 GCACTCCTTGATAGAGGTGGATC 60.244 52.174 0.00 0.00 38.04 3.36
129 131 6.031964 TCCTTGATAGAGGTGGATCTAACT 57.968 41.667 0.00 0.00 38.04 2.24
135 137 9.607333 TTGATAGAGGTGGATCTAACTATTGAT 57.393 33.333 0.00 0.00 35.48 2.57
155 157 6.172136 TGATTTTTGGCCAGATTTTCTTGA 57.828 33.333 5.11 0.00 0.00 3.02
196 2211 5.700832 TCGTTATCATCCACCAGCAAATATC 59.299 40.000 0.00 0.00 0.00 1.63
197 2212 5.469760 CGTTATCATCCACCAGCAAATATCA 59.530 40.000 0.00 0.00 0.00 2.15
205 2220 6.905736 TCCACCAGCAAATATCAGGTTAATA 58.094 36.000 0.00 0.00 0.00 0.98
207 2222 7.284489 TCCACCAGCAAATATCAGGTTAATAAC 59.716 37.037 0.00 0.00 0.00 1.89
224 2240 7.486551 GGTTAATAACGCAACAGCAAATATTCA 59.513 33.333 0.00 0.00 0.00 2.57
230 2246 4.027132 CGCAACAGCAAATATTCAATCTGC 60.027 41.667 1.55 1.55 0.00 4.26
234 2250 6.519679 ACAGCAAATATTCAATCTGCTCAA 57.480 33.333 8.32 0.00 41.30 3.02
239 2255 4.761235 ATATTCAATCTGCTCAATGCCG 57.239 40.909 0.00 0.00 42.00 5.69
257 2273 0.179076 CGCCAGGCTCACATGTGATA 60.179 55.000 28.00 8.04 39.13 2.15
262 2279 4.707105 CCAGGCTCACATGTGATACATAA 58.293 43.478 28.00 4.99 36.53 1.90
267 2284 5.048504 GGCTCACATGTGATACATAATTGGG 60.049 44.000 28.00 13.05 36.53 4.12
302 2323 4.847255 GCTGGTAGCAAACGCAAG 57.153 55.556 0.00 0.00 41.89 4.01
352 2373 3.622612 GGCGGTTAATTTATGGTGTACGT 59.377 43.478 0.00 0.00 0.00 3.57
355 2376 6.184706 GCGGTTAATTTATGGTGTACGTTAC 58.815 40.000 0.00 0.00 0.00 2.50
405 2774 3.679980 CCCGAACTCATCTGTTACTGTTG 59.320 47.826 0.00 0.00 0.00 3.33
423 2792 6.529220 ACTGTTGTGAAATAGAGAGCTTCTT 58.471 36.000 4.15 0.00 37.36 2.52
435 2804 9.732130 AATAGAGAGCTTCTTTTTCACAATAGT 57.268 29.630 4.15 0.00 37.36 2.12
442 2811 4.985538 TCTTTTTCACAATAGTCCAGGCT 58.014 39.130 0.00 0.00 0.00 4.58
444 2813 5.833131 TCTTTTTCACAATAGTCCAGGCTTT 59.167 36.000 0.00 0.00 0.00 3.51
448 2817 3.582647 TCACAATAGTCCAGGCTTTCTCA 59.417 43.478 0.00 0.00 0.00 3.27
453 2822 0.034670 GTCCAGGCTTTCTCATGGCT 60.035 55.000 0.00 0.00 39.75 4.75
487 2856 7.387948 TCTGGTACTGTTGAGAAATAAAAGCTC 59.612 37.037 0.00 0.00 0.00 4.09
488 2857 6.995686 TGGTACTGTTGAGAAATAAAAGCTCA 59.004 34.615 0.00 0.00 36.92 4.26
491 2860 7.195839 ACTGTTGAGAAATAAAAGCTCAGAC 57.804 36.000 0.00 0.00 39.56 3.51
503 2872 4.429854 AAGCTCAGACTTTCTGGACTTT 57.570 40.909 3.40 0.00 44.39 2.66
510 2879 7.574030 GCTCAGACTTTCTGGACTTTTATTTCC 60.574 40.741 3.40 0.00 44.39 3.13
517 2886 9.722056 CTTTCTGGACTTTTATTTCCGATATTG 57.278 33.333 0.00 0.00 34.24 1.90
519 2888 7.054124 TCTGGACTTTTATTTCCGATATTGCT 58.946 34.615 0.00 0.00 34.24 3.91
524 2893 6.828785 ACTTTTATTTCCGATATTGCTGGACT 59.171 34.615 0.00 0.00 0.00 3.85
525 2894 6.618287 TTTATTTCCGATATTGCTGGACTG 57.382 37.500 0.00 0.00 0.00 3.51
531 2900 3.461061 CGATATTGCTGGACTGTGTGAT 58.539 45.455 0.00 0.00 0.00 3.06
532 2901 3.492383 CGATATTGCTGGACTGTGTGATC 59.508 47.826 0.00 0.00 0.00 2.92
533 2902 2.119801 ATTGCTGGACTGTGTGATCC 57.880 50.000 0.00 0.00 35.37 3.36
534 2903 0.764271 TTGCTGGACTGTGTGATCCA 59.236 50.000 0.00 0.00 42.88 3.41
537 2907 2.224843 TGCTGGACTGTGTGATCCAAAT 60.225 45.455 0.00 0.00 44.42 2.32
542 2912 4.280677 TGGACTGTGTGATCCAAATTTTCC 59.719 41.667 0.00 0.00 42.14 3.13
544 2914 4.222336 ACTGTGTGATCCAAATTTTCCCA 58.778 39.130 0.00 0.00 0.00 4.37
550 2920 4.923281 GTGATCCAAATTTTCCCAGAAACG 59.077 41.667 0.00 0.00 0.00 3.60
554 2924 1.710816 AATTTTCCCAGAAACGCCCA 58.289 45.000 0.00 0.00 0.00 5.36
560 2930 1.296056 CCCAGAAACGCCCAAGTACG 61.296 60.000 0.00 0.00 0.00 3.67
575 2945 2.108168 AGTACGCAGCTTAGGGAATCA 58.892 47.619 0.00 0.00 0.00 2.57
603 2973 1.605232 TCACTTGTGCTCGTCGTTCTA 59.395 47.619 0.00 0.00 0.00 2.10
605 2975 2.405357 CACTTGTGCTCGTCGTTCTAAG 59.595 50.000 0.00 0.00 0.00 2.18
615 2985 3.057736 TCGTCGTTCTAAGGTCAAGGAAG 60.058 47.826 0.00 0.00 0.00 3.46
629 2999 3.353836 GAAGCGCCTTTGCCGTCA 61.354 61.111 2.29 0.00 34.65 4.35
631 3001 2.583685 GAAGCGCCTTTGCCGTCATC 62.584 60.000 2.29 0.00 34.65 2.92
641 3011 3.554692 CCGTCATCGCTTGCGACC 61.555 66.667 20.01 9.94 35.54 4.79
645 3015 2.892425 CATCGCTTGCGACCTCCC 60.892 66.667 20.01 0.00 0.00 4.30
658 3028 2.677037 CGACCTCCCGCTCATTTAGTTT 60.677 50.000 0.00 0.00 0.00 2.66
660 3030 2.304761 ACCTCCCGCTCATTTAGTTTGA 59.695 45.455 0.00 0.00 0.00 2.69
661 3031 2.678336 CCTCCCGCTCATTTAGTTTGAC 59.322 50.000 0.00 0.00 0.00 3.18
683 3053 0.830023 TAGGCCACCAAAAACCTGCC 60.830 55.000 5.01 0.00 39.17 4.85
686 3056 2.028925 CACCAAAAACCTGCCGGC 59.971 61.111 22.73 22.73 0.00 6.13
724 3094 5.635417 TTCTCGCCATATCTGATGTCTAG 57.365 43.478 0.00 0.00 0.00 2.43
725 3095 4.657013 TCTCGCCATATCTGATGTCTAGT 58.343 43.478 0.00 0.00 0.00 2.57
726 3096 5.805728 TCTCGCCATATCTGATGTCTAGTA 58.194 41.667 0.00 0.00 0.00 1.82
732 3102 6.647067 GCCATATCTGATGTCTAGTACAAACC 59.353 42.308 0.00 0.00 42.70 3.27
741 3111 4.754618 TGTCTAGTACAAACCGTCGAGTTA 59.245 41.667 0.00 0.00 34.29 2.24
742 3112 5.238432 TGTCTAGTACAAACCGTCGAGTTAA 59.762 40.000 0.00 0.00 34.29 2.01
760 3130 1.260544 AAGGCATTTGAGAACCCTGC 58.739 50.000 0.00 0.00 0.00 4.85
762 3132 1.607801 GGCATTTGAGAACCCTGCCC 61.608 60.000 0.37 0.00 45.26 5.36
774 3144 1.133199 ACCCTGCCCAATTTCACAGAA 60.133 47.619 0.00 0.00 31.67 3.02
778 3148 2.229784 CTGCCCAATTTCACAGAAGGTC 59.770 50.000 0.00 0.00 31.67 3.85
779 3149 1.546029 GCCCAATTTCACAGAAGGTCC 59.454 52.381 0.00 0.00 0.00 4.46
783 3153 3.828451 CCAATTTCACAGAAGGTCCACAT 59.172 43.478 0.00 0.00 0.00 3.21
790 3160 2.832129 ACAGAAGGTCCACATACACGAT 59.168 45.455 0.00 0.00 0.00 3.73
796 3166 2.094182 GGTCCACATACACGATGACTGT 60.094 50.000 0.00 0.00 39.06 3.55
797 3167 2.923655 GTCCACATACACGATGACTGTG 59.076 50.000 0.00 3.99 42.99 3.66
816 3186 1.892474 TGTTCCCCAACAGCAAATAGC 59.108 47.619 0.00 0.00 46.19 2.97
838 3208 3.813166 CGGTAACAACTTGATTGGAGTGT 59.187 43.478 0.00 0.00 43.20 3.55
839 3209 4.084013 CGGTAACAACTTGATTGGAGTGTC 60.084 45.833 0.00 0.00 43.20 3.67
840 3210 5.063880 GGTAACAACTTGATTGGAGTGTCT 58.936 41.667 0.00 0.00 43.20 3.41
841 3211 5.179555 GGTAACAACTTGATTGGAGTGTCTC 59.820 44.000 0.00 0.00 43.20 3.36
842 3212 4.696479 ACAACTTGATTGGAGTGTCTCT 57.304 40.909 0.00 0.00 43.20 3.10
843 3213 4.636249 ACAACTTGATTGGAGTGTCTCTC 58.364 43.478 0.00 0.00 43.20 3.20
844 3214 3.584406 ACTTGATTGGAGTGTCTCTCG 57.416 47.619 0.00 0.00 43.60 4.04
845 3215 3.157881 ACTTGATTGGAGTGTCTCTCGA 58.842 45.455 0.00 0.00 43.60 4.04
846 3216 3.574396 ACTTGATTGGAGTGTCTCTCGAA 59.426 43.478 2.42 2.42 43.05 3.71
847 3217 4.039245 ACTTGATTGGAGTGTCTCTCGAAA 59.961 41.667 3.87 0.00 42.40 3.46
848 3218 4.600692 TGATTGGAGTGTCTCTCGAAAA 57.399 40.909 3.87 0.00 42.40 2.29
849 3219 4.307432 TGATTGGAGTGTCTCTCGAAAAC 58.693 43.478 3.87 3.17 42.40 2.43
850 3220 3.812156 TTGGAGTGTCTCTCGAAAACA 57.188 42.857 0.00 0.00 43.60 2.83
851 3221 3.812156 TGGAGTGTCTCTCGAAAACAA 57.188 42.857 0.00 0.00 43.60 2.83
852 3222 4.131649 TGGAGTGTCTCTCGAAAACAAA 57.868 40.909 0.00 0.00 43.60 2.83
853 3223 4.703897 TGGAGTGTCTCTCGAAAACAAAT 58.296 39.130 0.00 0.00 43.60 2.32
854 3224 5.123227 TGGAGTGTCTCTCGAAAACAAATT 58.877 37.500 0.00 0.00 43.60 1.82
855 3225 5.588648 TGGAGTGTCTCTCGAAAACAAATTT 59.411 36.000 0.00 0.00 43.60 1.82
856 3226 6.764085 TGGAGTGTCTCTCGAAAACAAATTTA 59.236 34.615 0.00 0.00 43.60 1.40
857 3227 7.281324 TGGAGTGTCTCTCGAAAACAAATTTAA 59.719 33.333 0.00 0.00 43.60 1.52
858 3228 8.290325 GGAGTGTCTCTCGAAAACAAATTTAAT 58.710 33.333 0.00 0.00 43.60 1.40
859 3229 9.665264 GAGTGTCTCTCGAAAACAAATTTAATT 57.335 29.630 0.00 0.00 33.25 1.40
866 3236 9.607285 TCTCGAAAACAAATTTAATTAGAGTGC 57.393 29.630 14.02 0.00 0.00 4.40
867 3237 9.612620 CTCGAAAACAAATTTAATTAGAGTGCT 57.387 29.630 0.00 0.00 0.00 4.40
889 3259 4.442401 AATAGTGATGTGGATGGCATGA 57.558 40.909 3.81 0.00 0.00 3.07
890 3260 2.048444 AGTGATGTGGATGGCATGAC 57.952 50.000 3.81 1.56 32.04 3.06
907 3277 0.952984 GACAGACAGGACAGGCAAGC 60.953 60.000 0.00 0.00 0.00 4.01
921 3291 2.563297 CAAGCATGCTTCCAGCTCA 58.437 52.632 29.81 0.00 42.97 4.26
922 3292 0.885879 CAAGCATGCTTCCAGCTCAA 59.114 50.000 29.81 0.00 42.97 3.02
923 3293 1.135373 CAAGCATGCTTCCAGCTCAAG 60.135 52.381 29.81 11.79 42.97 3.02
924 3294 1.139095 GCATGCTTCCAGCTCAAGC 59.861 57.895 11.37 16.91 45.59 4.01
937 3307 2.146342 GCTCAAGCTCAGCTGTACAAA 58.854 47.619 14.67 0.00 39.62 2.83
946 3316 4.154918 GCTCAGCTGTACAAAAGTATGCTT 59.845 41.667 14.67 0.00 36.30 3.91
955 3325 7.581476 TGTACAAAAGTATGCTTGCTTCTTAC 58.419 34.615 3.46 6.35 34.71 2.34
956 3326 6.884280 ACAAAAGTATGCTTGCTTCTTACT 57.116 33.333 3.46 0.00 34.71 2.24
957 3327 7.979444 ACAAAAGTATGCTTGCTTCTTACTA 57.021 32.000 3.46 0.00 34.71 1.82
1056 3434 2.670934 CTCCTTGCAGCAGCGGTT 60.671 61.111 11.41 0.00 46.23 4.44
1081 3465 4.883300 CTACCGGCGCGACGACTC 62.883 72.222 39.83 2.42 35.47 3.36
1131 3518 0.122435 TGGACATCCCCTACCCCTTT 59.878 55.000 0.00 0.00 34.29 3.11
1286 3676 1.241315 GGGTGGCAATGCTACAACGT 61.241 55.000 22.60 0.00 41.80 3.99
1324 3717 3.517901 CACCTACAAGTGGGACTATGGAA 59.482 47.826 9.75 0.00 34.98 3.53
1326 3719 4.788617 ACCTACAAGTGGGACTATGGAAAT 59.211 41.667 9.75 0.00 34.98 2.17
1401 3794 2.661866 GTCGTCGGCTGCAACACT 60.662 61.111 0.50 0.00 0.00 3.55
1538 3937 3.190849 CGGATGCTGCCACGTCAG 61.191 66.667 0.00 0.01 37.15 3.51
1584 3986 4.351127 ACTACTTCAACTTCCGGGAGTAT 58.649 43.478 18.04 3.58 0.00 2.12
1617 4019 0.902984 TGATGGAGTACAGCCCGTGT 60.903 55.000 0.00 0.00 43.86 4.49
1683 4085 1.067846 TCCGACCTCAAGATGAACACG 60.068 52.381 0.00 0.00 0.00 4.49
1768 4185 1.355210 CCTTCGTGCAAACAAGCGT 59.645 52.632 0.00 0.00 37.31 5.07
1896 4313 2.203408 TTGCCCAACGGATGCACA 60.203 55.556 0.00 0.00 34.16 4.57
1913 4330 2.159462 GCACAAGTAAGATGCCTTGCTC 60.159 50.000 0.00 0.00 43.15 4.26
1914 4331 3.341823 CACAAGTAAGATGCCTTGCTCT 58.658 45.455 0.00 0.00 43.15 4.09
1915 4332 4.507710 CACAAGTAAGATGCCTTGCTCTA 58.492 43.478 0.00 0.00 43.15 2.43
1916 4333 5.121811 CACAAGTAAGATGCCTTGCTCTAT 58.878 41.667 0.00 0.00 43.15 1.98
1917 4334 5.236047 CACAAGTAAGATGCCTTGCTCTATC 59.764 44.000 0.00 0.00 43.15 2.08
1918 4335 5.130145 ACAAGTAAGATGCCTTGCTCTATCT 59.870 40.000 0.00 0.00 43.15 1.98
1919 4336 6.325028 ACAAGTAAGATGCCTTGCTCTATCTA 59.675 38.462 0.00 0.00 43.15 1.98
1998 5193 7.881775 AACATCTTTAAGTTTGACCAAGTCT 57.118 32.000 5.10 0.00 33.15 3.24
2000 5195 8.974060 ACATCTTTAAGTTTGACCAAGTCTAA 57.026 30.769 5.10 0.00 33.15 2.10
2001 5196 9.403583 ACATCTTTAAGTTTGACCAAGTCTAAA 57.596 29.630 5.10 0.00 30.38 1.85
2002 5197 9.884465 CATCTTTAAGTTTGACCAAGTCTAAAG 57.116 33.333 0.00 6.92 30.38 1.85
2008 5203 8.981724 AAGTTTGACCAAGTCTAAAGAAAAAC 57.018 30.769 0.00 0.00 30.38 2.43
2009 5204 8.117813 AGTTTGACCAAGTCTAAAGAAAAACA 57.882 30.769 0.00 0.00 30.38 2.83
2010 5205 8.749354 AGTTTGACCAAGTCTAAAGAAAAACAT 58.251 29.630 0.00 0.00 30.38 2.71
2117 7325 9.734620 TTTTTCAATAGACTTGATCAAACACAG 57.265 29.630 9.88 0.00 0.00 3.66
2118 7326 8.675705 TTTCAATAGACTTGATCAAACACAGA 57.324 30.769 9.88 0.00 0.00 3.41
2119 7327 7.895975 TCAATAGACTTGATCAAACACAGAG 57.104 36.000 9.88 0.00 0.00 3.35
2120 7328 7.670364 TCAATAGACTTGATCAAACACAGAGA 58.330 34.615 9.88 1.10 0.00 3.10
2121 7329 8.316946 TCAATAGACTTGATCAAACACAGAGAT 58.683 33.333 9.88 0.00 0.00 2.75
2122 7330 8.388853 CAATAGACTTGATCAAACACAGAGATG 58.611 37.037 9.88 0.00 0.00 2.90
2123 7331 5.862845 AGACTTGATCAAACACAGAGATGT 58.137 37.500 9.88 0.00 0.00 3.06
2124 7332 6.294473 AGACTTGATCAAACACAGAGATGTT 58.706 36.000 9.88 0.00 44.76 2.71
2135 7343 6.114187 ACACAGAGATGTTTGATTAGGACA 57.886 37.500 0.00 0.00 0.00 4.02
2136 7344 6.533730 ACACAGAGATGTTTGATTAGGACAA 58.466 36.000 0.00 0.00 0.00 3.18
2137 7345 6.998074 ACACAGAGATGTTTGATTAGGACAAA 59.002 34.615 0.00 0.00 35.34 2.83
2154 7362 6.694877 GGACAAACCTAGAACTTCAAGTTT 57.305 37.500 3.76 0.00 35.56 2.66
2155 7363 7.096884 GGACAAACCTAGAACTTCAAGTTTT 57.903 36.000 3.76 0.80 35.56 2.43
2156 7364 7.544622 GGACAAACCTAGAACTTCAAGTTTTT 58.455 34.615 3.76 0.00 35.56 1.94
2349 7777 5.266733 CAATGGACTTGGTCAAATATGGG 57.733 43.478 0.14 0.00 33.68 4.00
2401 8362 8.897872 ACTTCAAGTATTTTAGAACGGAGAAA 57.102 30.769 0.00 0.00 0.00 2.52
2409 9028 9.201127 GTATTTTAGAACGGAGAAAGTGTTAGT 57.799 33.333 0.00 0.00 0.00 2.24
2420 9039 9.286946 CGGAGAAAGTGTTAGTTACAACTATAG 57.713 37.037 2.79 0.00 40.87 1.31
2449 9135 9.757227 TGTTTTTCTTGGTAAATGTCCTAATTG 57.243 29.630 0.00 0.00 0.00 2.32
2450 9136 9.758651 GTTTTTCTTGGTAAATGTCCTAATTGT 57.241 29.630 0.00 0.00 0.00 2.71
2507 9255 1.108776 ATGAATGCGCAAATCCAGCT 58.891 45.000 17.11 0.00 0.00 4.24
2532 9280 4.583489 AGTATAGTTGCTACGGTGTATGCT 59.417 41.667 0.00 0.00 0.00 3.79
2586 9334 0.613260 TGCAGGTTATCAGAGCCGTT 59.387 50.000 0.00 0.00 0.00 4.44
2662 9444 6.145338 CGTAGGTAAACATCATACTCCTGT 57.855 41.667 0.00 0.00 0.00 4.00
2664 9446 6.696148 CGTAGGTAAACATCATACTCCTGTTC 59.304 42.308 0.00 0.00 32.18 3.18
2665 9447 6.875972 AGGTAAACATCATACTCCTGTTCT 57.124 37.500 0.00 0.00 32.18 3.01
2668 9450 7.620094 AGGTAAACATCATACTCCTGTTCTACT 59.380 37.037 0.00 0.00 32.18 2.57
2672 9454 7.956328 ACATCATACTCCTGTTCTACTTACA 57.044 36.000 0.00 0.00 0.00 2.41
2673 9455 7.773149 ACATCATACTCCTGTTCTACTTACAC 58.227 38.462 0.00 0.00 0.00 2.90
2674 9456 7.396339 ACATCATACTCCTGTTCTACTTACACA 59.604 37.037 0.00 0.00 0.00 3.72
2675 9457 7.154435 TCATACTCCTGTTCTACTTACACAC 57.846 40.000 0.00 0.00 0.00 3.82
2678 9460 5.844004 ACTCCTGTTCTACTTACACACAAG 58.156 41.667 0.00 0.00 0.00 3.16
2681 9463 5.361571 TCCTGTTCTACTTACACACAAGTCA 59.638 40.000 0.00 0.00 39.45 3.41
2683 9465 6.706270 CCTGTTCTACTTACACACAAGTCATT 59.294 38.462 0.00 0.00 39.45 2.57
2684 9466 7.226720 CCTGTTCTACTTACACACAAGTCATTT 59.773 37.037 0.00 0.00 39.45 2.32
2685 9467 8.138365 TGTTCTACTTACACACAAGTCATTTC 57.862 34.615 0.00 0.00 39.45 2.17
2686 9468 7.225931 TGTTCTACTTACACACAAGTCATTTCC 59.774 37.037 0.00 0.00 39.45 3.13
2687 9469 5.924254 TCTACTTACACACAAGTCATTTCCG 59.076 40.000 0.00 0.00 39.45 4.30
2688 9470 4.448210 ACTTACACACAAGTCATTTCCGT 58.552 39.130 0.00 0.00 33.41 4.69
2690 9472 5.694910 ACTTACACACAAGTCATTTCCGTAG 59.305 40.000 0.00 0.00 33.41 3.51
2692 9474 9.517168 ACTTACACACAAGTCATTTCCGTAGGT 62.517 40.741 0.00 0.00 41.31 3.08
2745 9536 5.012046 TGCCTAAATTGTTCTCTCTCAGTCA 59.988 40.000 0.00 0.00 0.00 3.41
2845 9639 2.802816 GACTCGCAAGTGAAGTGACATT 59.197 45.455 0.00 0.00 35.28 2.71
2849 9643 5.120830 ACTCGCAAGTGAAGTGACATTAATC 59.879 40.000 0.00 0.00 33.32 1.75
3613 11156 5.432885 ACACGTTTAACCTTTCATTCCAG 57.567 39.130 0.00 0.00 0.00 3.86
4111 12335 2.288729 GGGCCGACGGTGTATTATTTTC 59.711 50.000 16.73 0.00 0.00 2.29
4218 12939 6.319399 CCCTAATTGAACGGTTACATTCAAC 58.681 40.000 13.66 0.00 45.09 3.18
4225 12946 5.357314 TGAACGGTTACATTCAACTTCCAAA 59.643 36.000 0.00 0.00 31.95 3.28
4239 12960 7.577303 TCAACTTCCAAATATCTTGCTATCCT 58.423 34.615 0.00 0.00 0.00 3.24
4268 13150 0.944386 ATGTGCTCGCGTTTCAAACT 59.056 45.000 5.77 0.00 0.00 2.66
4345 13282 8.780249 GCAAACTAAGTAATGACCAGAAACTTA 58.220 33.333 0.00 0.00 32.85 2.24
4453 13401 2.681706 TCTTCGCAAAGAGAAGCAGAG 58.318 47.619 5.75 0.00 43.40 3.35
4555 13503 8.504815 GGATCTCAAACCAGTTTTAAAGAGTAC 58.495 37.037 7.70 0.00 0.00 2.73
4722 13670 3.125316 CCACAAGAACATCGTAAGGCTTC 59.875 47.826 1.30 0.00 38.47 3.86
4845 13793 6.525578 TTCTTGACTTGGATGTACGTCTAT 57.474 37.500 14.61 0.00 0.00 1.98
4907 13855 5.048364 GCACTCACAAACCCATAACACAATA 60.048 40.000 0.00 0.00 0.00 1.90
4955 13903 7.625185 GCAAACATACTCTTGGATGAGAACTTC 60.625 40.741 0.00 0.00 37.50 3.01
5012 13960 4.102113 GCACAAGGCAAGGACCAT 57.898 55.556 0.00 0.00 43.97 3.55
5042 13990 4.621991 ACATCATAGGCGACATGTCTTAC 58.378 43.478 22.95 12.73 32.27 2.34
5099 14047 3.123621 CCGACAAAAGTGATGTCTACAGC 59.876 47.826 5.28 0.00 43.93 4.40
5141 14089 1.767681 CTCATTAGCAGGAAGAGGGCT 59.232 52.381 0.00 0.00 41.51 5.19
5194 14142 3.067833 GCTTCCTAGAGTGTCACCAAAC 58.932 50.000 0.00 0.00 0.00 2.93
5382 14330 4.056050 CCGTAATCCTTAGGTTCATTCCG 58.944 47.826 0.00 0.00 0.00 4.30
5385 14333 5.510861 CGTAATCCTTAGGTTCATTCCGGAT 60.511 44.000 4.15 0.00 30.33 4.18
5412 14363 7.519809 CGGAGTTTCAACTTTCAACATGTATGA 60.520 37.037 0.00 2.60 39.88 2.15
5504 14462 9.500864 GTACTACTGTAGTGAGTAACTTTATGC 57.499 37.037 26.45 0.00 40.56 3.14
5508 14466 6.807230 ACTGTAGTGAGTAACTTTATGCTTCG 59.193 38.462 0.00 0.00 40.56 3.79
5522 14480 4.621068 ATGCTTCGTATGACCAAATGTG 57.379 40.909 0.00 0.00 0.00 3.21
5581 14654 5.510861 GGGTAGCGATTTAATCTTGCTCCTA 60.511 44.000 9.88 0.00 37.12 2.94
5603 14676 5.518848 ACAGAGCTCAGTGAGATCATTAG 57.481 43.478 33.44 23.14 46.10 1.73
5629 14705 8.519799 AAAACATCTTCCATAACAATATCCGT 57.480 30.769 0.00 0.00 0.00 4.69
5655 14732 9.856162 TGTTAGGTACATCACTAGTACATATGA 57.144 33.333 10.38 0.00 42.73 2.15
5661 14738 7.055667 ACATCACTAGTACATATGAAGTGGG 57.944 40.000 21.00 17.61 38.44 4.61
5687 14772 1.214062 CGACAGAGACACCTGCCTC 59.786 63.158 0.00 0.00 37.68 4.70
5809 14897 4.395959 AATGCATCAGCCATCGAATTTT 57.604 36.364 0.00 0.00 41.13 1.82
5833 14921 2.472029 AGGGAAGTACCACCATCTGAG 58.528 52.381 7.97 0.00 41.20 3.35
5846 14934 2.040278 CCATCTGAGGACCAAAGGACAA 59.960 50.000 0.00 0.00 0.00 3.18
5847 14935 3.308688 CCATCTGAGGACCAAAGGACAAT 60.309 47.826 0.00 0.00 0.00 2.71
5848 14936 4.080356 CCATCTGAGGACCAAAGGACAATA 60.080 45.833 0.00 0.00 0.00 1.90
5849 14937 5.500234 CATCTGAGGACCAAAGGACAATAA 58.500 41.667 0.00 0.00 0.00 1.40
5850 14938 5.165961 TCTGAGGACCAAAGGACAATAAG 57.834 43.478 0.00 0.00 0.00 1.73
5851 14939 3.686016 TGAGGACCAAAGGACAATAAGC 58.314 45.455 0.00 0.00 0.00 3.09
5852 14940 3.330701 TGAGGACCAAAGGACAATAAGCT 59.669 43.478 0.00 0.00 0.00 3.74
5853 14941 4.202567 TGAGGACCAAAGGACAATAAGCTT 60.203 41.667 3.48 3.48 0.00 3.74
5854 14942 5.013704 TGAGGACCAAAGGACAATAAGCTTA 59.986 40.000 8.99 8.99 0.00 3.09
5855 14943 5.254115 AGGACCAAAGGACAATAAGCTTAC 58.746 41.667 8.70 0.00 0.00 2.34
5856 14944 4.094442 GGACCAAAGGACAATAAGCTTACG 59.906 45.833 8.70 5.75 0.00 3.18
5857 14945 4.901868 ACCAAAGGACAATAAGCTTACGA 58.098 39.130 8.70 0.00 0.00 3.43
5858 14946 5.497474 ACCAAAGGACAATAAGCTTACGAT 58.503 37.500 8.70 0.00 0.00 3.73
5859 14947 6.646267 ACCAAAGGACAATAAGCTTACGATA 58.354 36.000 8.70 0.00 0.00 2.92
5860 14948 7.107542 ACCAAAGGACAATAAGCTTACGATAA 58.892 34.615 8.70 0.00 0.00 1.75
5861 14949 7.065443 ACCAAAGGACAATAAGCTTACGATAAC 59.935 37.037 8.70 0.00 0.00 1.89
5862 14950 7.280205 CCAAAGGACAATAAGCTTACGATAACT 59.720 37.037 8.70 0.68 0.00 2.24
5863 14951 8.665685 CAAAGGACAATAAGCTTACGATAACTT 58.334 33.333 8.70 6.80 0.00 2.66
5864 14952 8.788325 AAGGACAATAAGCTTACGATAACTTT 57.212 30.769 8.70 0.00 0.00 2.66
5865 14953 9.880157 AAGGACAATAAGCTTACGATAACTTTA 57.120 29.630 8.70 0.00 0.00 1.85
5866 14954 9.530633 AGGACAATAAGCTTACGATAACTTTAG 57.469 33.333 8.70 0.00 0.00 1.85
5867 14955 9.310716 GGACAATAAGCTTACGATAACTTTAGT 57.689 33.333 8.70 0.00 0.00 2.24
5872 14960 9.983804 ATAAGCTTACGATAACTTTAGTTTTGC 57.016 29.630 8.70 0.00 39.31 3.68
5873 14961 7.668525 AGCTTACGATAACTTTAGTTTTGCT 57.331 32.000 0.00 0.00 39.31 3.91
5874 14962 8.095937 AGCTTACGATAACTTTAGTTTTGCTT 57.904 30.769 0.00 0.00 39.31 3.91
5875 14963 8.015658 AGCTTACGATAACTTTAGTTTTGCTTG 58.984 33.333 0.00 0.00 39.31 4.01
5876 14964 7.270579 GCTTACGATAACTTTAGTTTTGCTTGG 59.729 37.037 0.00 0.00 39.31 3.61
5877 14965 6.628919 ACGATAACTTTAGTTTTGCTTGGT 57.371 33.333 0.00 0.00 39.31 3.67
5878 14966 6.435428 ACGATAACTTTAGTTTTGCTTGGTG 58.565 36.000 0.00 0.00 39.31 4.17
5879 14967 6.038936 ACGATAACTTTAGTTTTGCTTGGTGT 59.961 34.615 0.00 0.00 39.31 4.16
5880 14968 7.227116 ACGATAACTTTAGTTTTGCTTGGTGTA 59.773 33.333 0.00 0.00 39.31 2.90
5881 14969 7.532884 CGATAACTTTAGTTTTGCTTGGTGTAC 59.467 37.037 0.00 0.00 39.31 2.90
5882 14970 6.769134 AACTTTAGTTTTGCTTGGTGTACT 57.231 33.333 0.00 0.00 33.93 2.73
5883 14971 7.868906 AACTTTAGTTTTGCTTGGTGTACTA 57.131 32.000 0.00 0.00 33.93 1.82
5884 14972 7.492352 ACTTTAGTTTTGCTTGGTGTACTAG 57.508 36.000 0.00 0.00 0.00 2.57
5885 14973 6.485648 ACTTTAGTTTTGCTTGGTGTACTAGG 59.514 38.462 0.00 0.00 0.00 3.02
5886 14974 3.751518 AGTTTTGCTTGGTGTACTAGGG 58.248 45.455 0.00 0.00 0.00 3.53
5887 14975 2.194201 TTTGCTTGGTGTACTAGGGC 57.806 50.000 0.00 0.00 0.00 5.19
5888 14976 0.036765 TTGCTTGGTGTACTAGGGCG 60.037 55.000 0.00 0.00 0.00 6.13
5889 14977 1.814169 GCTTGGTGTACTAGGGCGC 60.814 63.158 0.00 0.00 0.00 6.53
5890 14978 1.153429 CTTGGTGTACTAGGGCGCC 60.153 63.158 21.18 21.18 35.93 6.53
5891 14979 1.895020 CTTGGTGTACTAGGGCGCCA 61.895 60.000 30.85 7.71 42.73 5.69
5892 14980 1.268992 TTGGTGTACTAGGGCGCCAT 61.269 55.000 30.85 26.24 43.69 4.40
5893 14981 0.397394 TGGTGTACTAGGGCGCCATA 60.397 55.000 30.85 25.87 39.97 2.74
5894 14982 0.033090 GGTGTACTAGGGCGCCATAC 59.967 60.000 30.85 22.79 35.49 2.39
5895 14983 1.038280 GTGTACTAGGGCGCCATACT 58.962 55.000 30.85 18.97 0.00 2.12
5896 14984 2.233271 GTGTACTAGGGCGCCATACTA 58.767 52.381 30.85 19.08 0.00 1.82
5897 14985 2.228343 GTGTACTAGGGCGCCATACTAG 59.772 54.545 30.85 28.51 39.96 2.57
5898 14986 2.158564 TGTACTAGGGCGCCATACTAGT 60.159 50.000 32.64 32.64 46.51 2.57
5899 14987 2.083628 ACTAGGGCGCCATACTAGTT 57.916 50.000 28.10 17.26 43.47 2.24
5900 14988 2.395619 ACTAGGGCGCCATACTAGTTT 58.604 47.619 28.10 13.99 43.47 2.66
5901 14989 3.569491 ACTAGGGCGCCATACTAGTTTA 58.431 45.455 28.10 6.87 43.47 2.01
5902 14990 2.904697 AGGGCGCCATACTAGTTTAC 57.095 50.000 30.85 5.70 0.00 2.01
5903 14991 2.395619 AGGGCGCCATACTAGTTTACT 58.604 47.619 30.85 8.32 0.00 2.24
5904 14992 2.364647 AGGGCGCCATACTAGTTTACTC 59.635 50.000 30.85 4.96 0.00 2.59
5905 14993 2.364647 GGGCGCCATACTAGTTTACTCT 59.635 50.000 30.85 0.00 0.00 3.24
5906 14994 3.381949 GGCGCCATACTAGTTTACTCTG 58.618 50.000 24.80 0.00 0.00 3.35
5907 14995 3.067742 GGCGCCATACTAGTTTACTCTGA 59.932 47.826 24.80 0.00 0.00 3.27
5908 14996 4.441079 GGCGCCATACTAGTTTACTCTGAA 60.441 45.833 24.80 0.00 0.00 3.02
5909 14997 5.107133 GCGCCATACTAGTTTACTCTGAAA 58.893 41.667 0.00 0.00 0.00 2.69
5910 14998 5.232414 GCGCCATACTAGTTTACTCTGAAAG 59.768 44.000 0.00 0.00 0.00 2.62
5911 14999 6.331061 CGCCATACTAGTTTACTCTGAAAGT 58.669 40.000 0.00 0.00 42.33 2.66
5912 15000 6.472808 CGCCATACTAGTTTACTCTGAAAGTC 59.527 42.308 0.00 0.00 39.55 3.01
5913 15001 7.548967 GCCATACTAGTTTACTCTGAAAGTCT 58.451 38.462 0.00 0.00 39.55 3.24
5914 15002 8.684520 GCCATACTAGTTTACTCTGAAAGTCTA 58.315 37.037 0.00 0.00 39.55 2.59
5917 15005 7.706100 ACTAGTTTACTCTGAAAGTCTAGGG 57.294 40.000 0.00 0.00 39.55 3.53
5918 15006 5.408880 AGTTTACTCTGAAAGTCTAGGGC 57.591 43.478 0.00 0.00 39.55 5.19
5919 15007 4.223255 AGTTTACTCTGAAAGTCTAGGGCC 59.777 45.833 0.00 0.00 39.55 5.80
5920 15008 2.632763 ACTCTGAAAGTCTAGGGCCT 57.367 50.000 12.58 12.58 30.02 5.19
5921 15009 2.462723 ACTCTGAAAGTCTAGGGCCTC 58.537 52.381 10.74 0.00 30.02 4.70
5922 15010 1.407258 CTCTGAAAGTCTAGGGCCTCG 59.593 57.143 10.74 3.10 33.76 4.63
5923 15011 0.179097 CTGAAAGTCTAGGGCCTCGC 60.179 60.000 10.74 0.76 0.00 5.03
5939 15027 4.109675 GCCCATGTGCCCCGTAGT 62.110 66.667 0.00 0.00 0.00 2.73
5940 15028 2.674754 CCCATGTGCCCCGTAGTT 59.325 61.111 0.00 0.00 0.00 2.24
5941 15029 1.001393 CCCATGTGCCCCGTAGTTT 60.001 57.895 0.00 0.00 0.00 2.66
5942 15030 1.029947 CCCATGTGCCCCGTAGTTTC 61.030 60.000 0.00 0.00 0.00 2.78
5943 15031 1.366111 CCATGTGCCCCGTAGTTTCG 61.366 60.000 0.00 0.00 0.00 3.46
5955 15043 5.789710 CCGTAGTTTCGGTACATTTTCAT 57.210 39.130 0.00 0.00 44.77 2.57
5956 15044 6.173191 CCGTAGTTTCGGTACATTTTCATT 57.827 37.500 0.00 0.00 44.77 2.57
5957 15045 6.019152 CCGTAGTTTCGGTACATTTTCATTG 58.981 40.000 0.00 0.00 44.77 2.82
5958 15046 6.019152 CGTAGTTTCGGTACATTTTCATTGG 58.981 40.000 0.00 0.00 0.00 3.16
5959 15047 4.805219 AGTTTCGGTACATTTTCATTGGC 58.195 39.130 0.00 0.00 0.00 4.52
5960 15048 3.859411 TTCGGTACATTTTCATTGGCC 57.141 42.857 0.00 0.00 0.00 5.36
5961 15049 2.796557 TCGGTACATTTTCATTGGCCA 58.203 42.857 0.00 0.00 0.00 5.36
5962 15050 3.157881 TCGGTACATTTTCATTGGCCAA 58.842 40.909 23.00 23.00 0.00 4.52
5963 15051 3.766591 TCGGTACATTTTCATTGGCCAAT 59.233 39.130 25.73 25.73 0.00 3.16
5964 15052 4.221703 TCGGTACATTTTCATTGGCCAATT 59.778 37.500 28.68 14.59 0.00 2.32
5965 15053 4.566360 CGGTACATTTTCATTGGCCAATTC 59.434 41.667 28.68 3.89 0.00 2.17
5966 15054 4.566360 GGTACATTTTCATTGGCCAATTCG 59.434 41.667 28.68 18.12 0.00 3.34
5967 15055 4.533919 ACATTTTCATTGGCCAATTCGA 57.466 36.364 28.68 20.17 0.00 3.71
5968 15056 4.892433 ACATTTTCATTGGCCAATTCGAA 58.108 34.783 28.68 24.45 0.00 3.71
5969 15057 4.931002 ACATTTTCATTGGCCAATTCGAAG 59.069 37.500 28.68 16.63 0.00 3.79
5970 15058 2.652941 TTCATTGGCCAATTCGAAGC 57.347 45.000 28.68 1.17 0.00 3.86
5974 15062 3.680156 GGCCAATTCGAAGCCACA 58.320 55.556 19.04 0.00 46.34 4.17
5975 15063 2.192605 GGCCAATTCGAAGCCACAT 58.807 52.632 19.04 0.00 46.34 3.21
5976 15064 1.388547 GGCCAATTCGAAGCCACATA 58.611 50.000 19.04 0.00 46.34 2.29
5977 15065 1.956477 GGCCAATTCGAAGCCACATAT 59.044 47.619 19.04 0.00 46.34 1.78
5978 15066 2.362077 GGCCAATTCGAAGCCACATATT 59.638 45.455 19.04 0.00 46.34 1.28
5979 15067 3.181476 GGCCAATTCGAAGCCACATATTT 60.181 43.478 19.04 0.00 46.34 1.40
5980 15068 4.432712 GCCAATTCGAAGCCACATATTTT 58.567 39.130 3.35 0.00 0.00 1.82
5981 15069 4.869861 GCCAATTCGAAGCCACATATTTTT 59.130 37.500 3.35 0.00 0.00 1.94
5982 15070 5.005682 GCCAATTCGAAGCCACATATTTTTC 59.994 40.000 3.35 0.00 0.00 2.29
5983 15071 5.519927 CCAATTCGAAGCCACATATTTTTCC 59.480 40.000 3.35 0.00 0.00 3.13
5984 15072 4.712122 TTCGAAGCCACATATTTTTCCC 57.288 40.909 0.00 0.00 0.00 3.97
5985 15073 3.691575 TCGAAGCCACATATTTTTCCCA 58.308 40.909 0.00 0.00 0.00 4.37
5986 15074 3.694072 TCGAAGCCACATATTTTTCCCAG 59.306 43.478 0.00 0.00 0.00 4.45
5987 15075 3.181487 CGAAGCCACATATTTTTCCCAGG 60.181 47.826 0.00 0.00 0.00 4.45
5988 15076 3.473113 AGCCACATATTTTTCCCAGGT 57.527 42.857 0.00 0.00 0.00 4.00
5989 15077 3.099141 AGCCACATATTTTTCCCAGGTG 58.901 45.455 0.00 0.00 0.00 4.00
5990 15078 2.831526 GCCACATATTTTTCCCAGGTGT 59.168 45.455 0.00 0.00 0.00 4.16
5991 15079 4.020543 GCCACATATTTTTCCCAGGTGTA 58.979 43.478 0.00 0.00 0.00 2.90
5992 15080 4.142249 GCCACATATTTTTCCCAGGTGTAC 60.142 45.833 0.00 0.00 0.00 2.90
5993 15081 5.261216 CCACATATTTTTCCCAGGTGTACT 58.739 41.667 0.00 0.00 0.00 2.73
6003 15091 2.058675 AGGTGTACTGAGGGTGTGC 58.941 57.895 0.00 0.00 0.00 4.57
6004 15092 0.471971 AGGTGTACTGAGGGTGTGCT 60.472 55.000 0.00 0.00 0.00 4.40
6005 15093 0.320771 GGTGTACTGAGGGTGTGCTG 60.321 60.000 0.00 0.00 0.00 4.41
6006 15094 0.393077 GTGTACTGAGGGTGTGCTGT 59.607 55.000 0.00 0.00 0.00 4.40
6007 15095 1.616865 GTGTACTGAGGGTGTGCTGTA 59.383 52.381 0.00 0.00 0.00 2.74
6008 15096 1.893137 TGTACTGAGGGTGTGCTGTAG 59.107 52.381 0.00 0.00 0.00 2.74
6009 15097 2.168496 GTACTGAGGGTGTGCTGTAGA 58.832 52.381 0.00 0.00 0.00 2.59
6010 15098 1.944177 ACTGAGGGTGTGCTGTAGAT 58.056 50.000 0.00 0.00 0.00 1.98
6011 15099 2.260822 ACTGAGGGTGTGCTGTAGATT 58.739 47.619 0.00 0.00 0.00 2.40
6012 15100 2.639839 ACTGAGGGTGTGCTGTAGATTT 59.360 45.455 0.00 0.00 0.00 2.17
6013 15101 3.838317 ACTGAGGGTGTGCTGTAGATTTA 59.162 43.478 0.00 0.00 0.00 1.40
6014 15102 4.286032 ACTGAGGGTGTGCTGTAGATTTAA 59.714 41.667 0.00 0.00 0.00 1.52
6015 15103 5.221843 ACTGAGGGTGTGCTGTAGATTTAAA 60.222 40.000 0.00 0.00 0.00 1.52
6016 15104 5.001232 TGAGGGTGTGCTGTAGATTTAAAC 58.999 41.667 0.00 0.00 0.00 2.01
6017 15105 5.221843 TGAGGGTGTGCTGTAGATTTAAACT 60.222 40.000 0.00 0.00 0.00 2.66
6018 15106 5.631119 AGGGTGTGCTGTAGATTTAAACTT 58.369 37.500 0.00 0.00 0.00 2.66
6019 15107 6.068670 AGGGTGTGCTGTAGATTTAAACTTT 58.931 36.000 0.00 0.00 0.00 2.66
6020 15108 7.228590 AGGGTGTGCTGTAGATTTAAACTTTA 58.771 34.615 0.00 0.00 0.00 1.85
6021 15109 7.722285 AGGGTGTGCTGTAGATTTAAACTTTAA 59.278 33.333 0.00 0.00 0.00 1.52
6022 15110 8.520351 GGGTGTGCTGTAGATTTAAACTTTAAT 58.480 33.333 0.00 0.00 0.00 1.40
6039 15127 8.956533 AACTTTAATAATGTTGTTGGCTTTGT 57.043 26.923 3.86 0.00 0.00 2.83
6044 15132 6.966435 ATAATGTTGTTGGCTTTGTATTGC 57.034 33.333 0.00 0.00 0.00 3.56
6045 15133 4.605640 ATGTTGTTGGCTTTGTATTGCT 57.394 36.364 0.00 0.00 0.00 3.91
6046 15134 4.399004 TGTTGTTGGCTTTGTATTGCTT 57.601 36.364 0.00 0.00 0.00 3.91
6047 15135 5.521906 TGTTGTTGGCTTTGTATTGCTTA 57.478 34.783 0.00 0.00 0.00 3.09
6048 15136 5.907207 TGTTGTTGGCTTTGTATTGCTTAA 58.093 33.333 0.00 0.00 0.00 1.85
6049 15137 6.520272 TGTTGTTGGCTTTGTATTGCTTAAT 58.480 32.000 0.00 0.00 0.00 1.40
6050 15138 6.989169 TGTTGTTGGCTTTGTATTGCTTAATT 59.011 30.769 0.00 0.00 0.00 1.40
6051 15139 7.497249 TGTTGTTGGCTTTGTATTGCTTAATTT 59.503 29.630 0.00 0.00 0.00 1.82
6052 15140 7.650834 TGTTGGCTTTGTATTGCTTAATTTC 57.349 32.000 0.00 0.00 0.00 2.17
6053 15141 7.441017 TGTTGGCTTTGTATTGCTTAATTTCT 58.559 30.769 0.00 0.00 0.00 2.52
6054 15142 7.930865 TGTTGGCTTTGTATTGCTTAATTTCTT 59.069 29.630 0.00 0.00 0.00 2.52
6055 15143 7.887996 TGGCTTTGTATTGCTTAATTTCTTG 57.112 32.000 0.00 0.00 0.00 3.02
6056 15144 6.368516 TGGCTTTGTATTGCTTAATTTCTTGC 59.631 34.615 0.00 0.00 0.00 4.01
6057 15145 6.368516 GGCTTTGTATTGCTTAATTTCTTGCA 59.631 34.615 0.00 0.00 0.00 4.08
6059 15147 7.953710 GCTTTGTATTGCTTAATTTCTTGCAAG 59.046 33.333 20.81 20.81 46.37 4.01
6060 15148 9.195411 CTTTGTATTGCTTAATTTCTTGCAAGA 57.805 29.630 25.16 25.16 46.37 3.02
6061 15149 8.746922 TTGTATTGCTTAATTTCTTGCAAGAG 57.253 30.769 27.02 16.42 46.37 2.85
6062 15150 6.808212 TGTATTGCTTAATTTCTTGCAAGAGC 59.192 34.615 27.02 24.44 46.37 4.09
6072 15160 3.343972 GCAAGAGCAAGGCAACGA 58.656 55.556 0.00 0.00 41.33 3.85
6073 15161 1.878775 GCAAGAGCAAGGCAACGAT 59.121 52.632 0.00 0.00 41.33 3.73
6074 15162 0.455633 GCAAGAGCAAGGCAACGATG 60.456 55.000 0.00 0.00 41.33 3.84
6085 15173 3.812097 CAACGATGCATCATCCGTG 57.188 52.632 25.70 11.06 37.57 4.94
6086 15174 1.289276 CAACGATGCATCATCCGTGA 58.711 50.000 25.70 0.00 37.57 4.35
6087 15175 1.259770 CAACGATGCATCATCCGTGAG 59.740 52.381 25.70 11.18 37.57 3.51
6099 15187 3.876300 CGTGAGGCCAGTGCTAAC 58.124 61.111 5.01 0.00 37.74 2.34
6100 15188 2.094659 CGTGAGGCCAGTGCTAACG 61.095 63.158 5.01 0.00 37.74 3.18
6101 15189 1.004918 GTGAGGCCAGTGCTAACGT 60.005 57.895 5.01 0.00 37.74 3.99
6102 15190 1.014564 GTGAGGCCAGTGCTAACGTC 61.015 60.000 5.01 0.00 37.74 4.34
6103 15191 1.448013 GAGGCCAGTGCTAACGTCC 60.448 63.158 5.01 0.00 37.74 4.79
6104 15192 2.167398 GAGGCCAGTGCTAACGTCCA 62.167 60.000 5.01 0.00 37.74 4.02
6105 15193 1.741770 GGCCAGTGCTAACGTCCAG 60.742 63.158 0.00 0.00 37.74 3.86
6106 15194 1.741770 GCCAGTGCTAACGTCCAGG 60.742 63.158 0.00 0.00 33.53 4.45
6107 15195 1.741770 CCAGTGCTAACGTCCAGGC 60.742 63.158 0.00 0.00 0.00 4.85
6108 15196 1.005037 CAGTGCTAACGTCCAGGCA 60.005 57.895 0.00 0.00 0.00 4.75
6109 15197 0.602638 CAGTGCTAACGTCCAGGCAA 60.603 55.000 6.33 0.00 36.43 4.52
6110 15198 0.107831 AGTGCTAACGTCCAGGCAAA 59.892 50.000 6.33 0.00 36.43 3.68
6111 15199 1.165270 GTGCTAACGTCCAGGCAAAT 58.835 50.000 6.33 0.00 36.43 2.32
6112 15200 1.539827 GTGCTAACGTCCAGGCAAATT 59.460 47.619 6.33 0.00 36.43 1.82
6113 15201 2.745281 GTGCTAACGTCCAGGCAAATTA 59.255 45.455 6.33 0.00 36.43 1.40
6114 15202 3.377172 GTGCTAACGTCCAGGCAAATTAT 59.623 43.478 6.33 0.00 36.43 1.28
6115 15203 4.573201 GTGCTAACGTCCAGGCAAATTATA 59.427 41.667 6.33 0.00 36.43 0.98
6116 15204 4.814234 TGCTAACGTCCAGGCAAATTATAG 59.186 41.667 0.00 0.00 0.00 1.31
6117 15205 5.054477 GCTAACGTCCAGGCAAATTATAGA 58.946 41.667 0.00 0.00 0.00 1.98
6118 15206 5.701290 GCTAACGTCCAGGCAAATTATAGAT 59.299 40.000 0.00 0.00 0.00 1.98
6119 15207 6.872020 GCTAACGTCCAGGCAAATTATAGATA 59.128 38.462 0.00 0.00 0.00 1.98
6120 15208 7.549488 GCTAACGTCCAGGCAAATTATAGATAT 59.451 37.037 0.00 0.00 0.00 1.63
6121 15209 7.907214 AACGTCCAGGCAAATTATAGATATC 57.093 36.000 0.00 0.00 0.00 1.63
6122 15210 6.100004 ACGTCCAGGCAAATTATAGATATCG 58.900 40.000 0.00 0.00 0.00 2.92
6123 15211 6.071560 ACGTCCAGGCAAATTATAGATATCGA 60.072 38.462 0.00 0.00 0.00 3.59
6124 15212 6.473778 CGTCCAGGCAAATTATAGATATCGAG 59.526 42.308 0.00 0.00 0.00 4.04
6125 15213 7.548097 GTCCAGGCAAATTATAGATATCGAGA 58.452 38.462 0.00 0.00 0.00 4.04
6126 15214 7.489757 GTCCAGGCAAATTATAGATATCGAGAC 59.510 40.741 0.00 0.00 0.00 3.36
6127 15215 7.178451 TCCAGGCAAATTATAGATATCGAGACA 59.822 37.037 0.00 0.00 0.00 3.41
6128 15216 7.984050 CCAGGCAAATTATAGATATCGAGACAT 59.016 37.037 0.00 0.00 0.00 3.06
6129 15217 9.376075 CAGGCAAATTATAGATATCGAGACATT 57.624 33.333 0.00 0.00 0.00 2.71
6130 15218 9.950496 AGGCAAATTATAGATATCGAGACATTT 57.050 29.630 0.00 0.00 0.00 2.32
6131 15219 9.979270 GGCAAATTATAGATATCGAGACATTTG 57.021 33.333 17.33 17.33 33.93 2.32
6138 15226 8.994429 ATAGATATCGAGACATTTGAATGGAC 57.006 34.615 8.44 2.78 40.70 4.02
6139 15227 7.060383 AGATATCGAGACATTTGAATGGACT 57.940 36.000 8.44 6.94 40.70 3.85
6140 15228 7.504403 AGATATCGAGACATTTGAATGGACTT 58.496 34.615 8.44 0.00 40.70 3.01
6141 15229 5.808042 ATCGAGACATTTGAATGGACTTG 57.192 39.130 8.44 9.99 40.70 3.16
6142 15230 4.641396 TCGAGACATTTGAATGGACTTGT 58.359 39.130 8.44 0.00 40.70 3.16
6143 15231 5.063204 TCGAGACATTTGAATGGACTTGTT 58.937 37.500 8.44 0.00 40.70 2.83
6144 15232 5.049474 TCGAGACATTTGAATGGACTTGTTG 60.049 40.000 8.44 1.48 40.70 3.33
6145 15233 5.277974 CGAGACATTTGAATGGACTTGTTGT 60.278 40.000 8.44 0.00 40.70 3.32
6146 15234 6.073276 CGAGACATTTGAATGGACTTGTTGTA 60.073 38.462 8.44 0.00 40.70 2.41
6147 15235 6.970484 AGACATTTGAATGGACTTGTTGTAC 58.030 36.000 8.44 0.00 40.70 2.90
6148 15236 6.016276 AGACATTTGAATGGACTTGTTGTACC 60.016 38.462 8.44 0.00 40.70 3.34
6149 15237 5.833131 ACATTTGAATGGACTTGTTGTACCT 59.167 36.000 8.44 0.00 40.70 3.08
6150 15238 6.323739 ACATTTGAATGGACTTGTTGTACCTT 59.676 34.615 8.44 0.00 40.70 3.50
6151 15239 5.766150 TTGAATGGACTTGTTGTACCTTG 57.234 39.130 0.00 0.00 0.00 3.61
6152 15240 4.141287 TGAATGGACTTGTTGTACCTTGG 58.859 43.478 0.00 0.00 0.00 3.61
6153 15241 4.141367 TGAATGGACTTGTTGTACCTTGGA 60.141 41.667 0.00 0.00 0.00 3.53
6154 15242 3.202829 TGGACTTGTTGTACCTTGGAC 57.797 47.619 0.00 0.00 0.00 4.02
6155 15243 2.140717 GGACTTGTTGTACCTTGGACG 58.859 52.381 0.00 0.00 0.00 4.79
6156 15244 2.140717 GACTTGTTGTACCTTGGACGG 58.859 52.381 0.00 0.00 0.00 4.79
6157 15245 1.764134 ACTTGTTGTACCTTGGACGGA 59.236 47.619 0.00 0.00 0.00 4.69
6158 15246 2.140717 CTTGTTGTACCTTGGACGGAC 58.859 52.381 0.00 0.00 0.00 4.79
6159 15247 1.416243 TGTTGTACCTTGGACGGACT 58.584 50.000 0.00 0.00 0.00 3.85
6160 15248 2.596346 TGTTGTACCTTGGACGGACTA 58.404 47.619 0.00 0.00 0.00 2.59
6161 15249 2.559668 TGTTGTACCTTGGACGGACTAG 59.440 50.000 0.00 0.00 0.00 2.57
6162 15250 2.560105 GTTGTACCTTGGACGGACTAGT 59.440 50.000 0.00 0.00 0.00 2.57
6163 15251 3.719268 TGTACCTTGGACGGACTAGTA 57.281 47.619 0.00 0.00 0.00 1.82
6164 15252 3.347216 TGTACCTTGGACGGACTAGTAC 58.653 50.000 0.00 0.00 0.00 2.73
6165 15253 2.895242 ACCTTGGACGGACTAGTACT 57.105 50.000 2.99 0.00 0.00 2.73
6166 15254 3.166560 ACCTTGGACGGACTAGTACTT 57.833 47.619 0.00 0.00 0.00 2.24
6167 15255 4.307032 ACCTTGGACGGACTAGTACTTA 57.693 45.455 0.00 0.00 0.00 2.24
6168 15256 4.666512 ACCTTGGACGGACTAGTACTTAA 58.333 43.478 0.00 0.00 0.00 1.85
6169 15257 5.267587 ACCTTGGACGGACTAGTACTTAAT 58.732 41.667 0.00 0.00 0.00 1.40
6170 15258 6.426587 ACCTTGGACGGACTAGTACTTAATA 58.573 40.000 0.00 0.00 0.00 0.98
6171 15259 6.319911 ACCTTGGACGGACTAGTACTTAATAC 59.680 42.308 0.00 0.00 0.00 1.89
6172 15260 6.545298 CCTTGGACGGACTAGTACTTAATACT 59.455 42.308 0.00 0.00 46.39 2.12
6173 15261 7.255070 CCTTGGACGGACTAGTACTTAATACTC 60.255 44.444 0.00 0.00 43.47 2.59
6174 15262 6.058183 TGGACGGACTAGTACTTAATACTCC 58.942 44.000 0.00 0.13 43.47 3.85
6175 15263 5.471797 GGACGGACTAGTACTTAATACTCCC 59.528 48.000 0.00 0.00 43.47 4.30
6176 15264 6.259346 ACGGACTAGTACTTAATACTCCCT 57.741 41.667 0.00 0.00 43.47 4.20
6177 15265 6.295249 ACGGACTAGTACTTAATACTCCCTC 58.705 44.000 0.00 0.00 43.47 4.30
6178 15266 5.704978 CGGACTAGTACTTAATACTCCCTCC 59.295 48.000 0.00 0.00 43.47 4.30
6179 15267 5.704978 GGACTAGTACTTAATACTCCCTCCG 59.295 48.000 0.00 0.00 43.47 4.63
6180 15268 6.259346 ACTAGTACTTAATACTCCCTCCGT 57.741 41.667 0.00 0.00 43.47 4.69
6181 15269 6.667661 ACTAGTACTTAATACTCCCTCCGTT 58.332 40.000 0.00 0.00 43.47 4.44
6182 15270 7.122048 ACTAGTACTTAATACTCCCTCCGTTT 58.878 38.462 0.00 0.00 43.47 3.60
6183 15271 6.864151 AGTACTTAATACTCCCTCCGTTTT 57.136 37.500 0.00 0.00 40.31 2.43
6184 15272 7.250032 AGTACTTAATACTCCCTCCGTTTTT 57.750 36.000 0.00 0.00 40.31 1.94
6185 15273 8.366359 AGTACTTAATACTCCCTCCGTTTTTA 57.634 34.615 0.00 0.00 40.31 1.52
6186 15274 8.985922 AGTACTTAATACTCCCTCCGTTTTTAT 58.014 33.333 0.00 0.00 40.31 1.40
6187 15275 9.605275 GTACTTAATACTCCCTCCGTTTTTATT 57.395 33.333 0.00 0.00 0.00 1.40
6196 15284 9.524496 ACTCCCTCCGTTTTTATTTATAAAGTT 57.476 29.630 3.94 0.00 34.13 2.66
6232 15320 9.567776 TCATAGAAAACAATCTAAACTTCCACA 57.432 29.630 0.00 0.00 35.64 4.17
6286 15374 8.470040 GCTAATGGCATAATGGTATTGATTTG 57.530 34.615 0.00 0.00 41.35 2.32
6287 15375 7.546667 GCTAATGGCATAATGGTATTGATTTGG 59.453 37.037 0.00 0.00 41.35 3.28
6288 15376 6.999705 ATGGCATAATGGTATTGATTTGGT 57.000 33.333 0.00 0.00 0.00 3.67
6289 15377 8.489676 AATGGCATAATGGTATTGATTTGGTA 57.510 30.769 0.00 0.00 0.00 3.25
6290 15378 8.669055 ATGGCATAATGGTATTGATTTGGTAT 57.331 30.769 0.00 0.00 0.00 2.73
6291 15379 8.489676 TGGCATAATGGTATTGATTTGGTATT 57.510 30.769 0.00 0.00 0.00 1.89
6292 15380 8.366401 TGGCATAATGGTATTGATTTGGTATTG 58.634 33.333 0.00 0.00 0.00 1.90
6293 15381 8.367156 GGCATAATGGTATTGATTTGGTATTGT 58.633 33.333 0.00 0.00 0.00 2.71
6294 15382 9.195411 GCATAATGGTATTGATTTGGTATTGTG 57.805 33.333 0.00 0.00 0.00 3.33
6295 15383 9.695526 CATAATGGTATTGATTTGGTATTGTGG 57.304 33.333 0.00 0.00 0.00 4.17
6296 15384 7.969690 AATGGTATTGATTTGGTATTGTGGA 57.030 32.000 0.00 0.00 0.00 4.02
6297 15385 8.551682 AATGGTATTGATTTGGTATTGTGGAT 57.448 30.769 0.00 0.00 0.00 3.41
6298 15386 7.345422 TGGTATTGATTTGGTATTGTGGATG 57.655 36.000 0.00 0.00 0.00 3.51
6299 15387 6.894654 TGGTATTGATTTGGTATTGTGGATGT 59.105 34.615 0.00 0.00 0.00 3.06
6300 15388 7.398618 TGGTATTGATTTGGTATTGTGGATGTT 59.601 33.333 0.00 0.00 0.00 2.71
6301 15389 7.920682 GGTATTGATTTGGTATTGTGGATGTTC 59.079 37.037 0.00 0.00 0.00 3.18
6302 15390 6.907853 TTGATTTGGTATTGTGGATGTTCA 57.092 33.333 0.00 0.00 0.00 3.18
6303 15391 7.479352 TTGATTTGGTATTGTGGATGTTCAT 57.521 32.000 0.00 0.00 0.00 2.57
6304 15392 8.586879 TTGATTTGGTATTGTGGATGTTCATA 57.413 30.769 0.00 0.00 0.00 2.15
6305 15393 8.586879 TGATTTGGTATTGTGGATGTTCATAA 57.413 30.769 0.00 0.00 0.00 1.90
6306 15394 9.199645 TGATTTGGTATTGTGGATGTTCATAAT 57.800 29.630 0.00 0.00 33.93 1.28
6340 15428 4.736126 CCTGGTCAAAGGTTTCAAAGTT 57.264 40.909 0.00 0.00 32.17 2.66
6341 15429 5.084818 CCTGGTCAAAGGTTTCAAAGTTT 57.915 39.130 0.00 0.00 32.17 2.66
6342 15430 4.869861 CCTGGTCAAAGGTTTCAAAGTTTG 59.130 41.667 9.44 9.44 32.17 2.93
6343 15431 5.337169 CCTGGTCAAAGGTTTCAAAGTTTGA 60.337 40.000 14.35 14.35 36.74 2.69
6348 15436 6.987386 TCAAAGGTTTCAAAGTTTGACTTGA 58.013 32.000 17.85 16.27 38.66 3.02
6349 15437 7.090173 TCAAAGGTTTCAAAGTTTGACTTGAG 58.910 34.615 17.85 13.23 38.66 3.02
6350 15438 6.834168 AAGGTTTCAAAGTTTGACTTGAGA 57.166 33.333 17.85 0.00 38.66 3.27
6351 15439 6.196079 AGGTTTCAAAGTTTGACTTGAGAC 57.804 37.500 17.85 9.48 38.66 3.36
6352 15440 5.710099 AGGTTTCAAAGTTTGACTTGAGACA 59.290 36.000 17.85 0.00 38.66 3.41
6353 15441 6.208599 AGGTTTCAAAGTTTGACTTGAGACAA 59.791 34.615 17.85 4.57 38.66 3.18
6354 15442 7.035612 GGTTTCAAAGTTTGACTTGAGACAAT 58.964 34.615 17.85 0.00 38.66 2.71
6355 15443 7.009540 GGTTTCAAAGTTTGACTTGAGACAATG 59.990 37.037 17.85 0.00 38.66 2.82
6356 15444 5.581605 TCAAAGTTTGACTTGAGACAATGC 58.418 37.500 14.35 0.00 38.66 3.56
6357 15445 5.357878 TCAAAGTTTGACTTGAGACAATGCT 59.642 36.000 14.35 0.00 38.66 3.79
6358 15446 6.542005 TCAAAGTTTGACTTGAGACAATGCTA 59.458 34.615 14.35 0.00 38.66 3.49
6359 15447 6.942532 AAGTTTGACTTGAGACAATGCTAA 57.057 33.333 0.00 0.00 37.00 3.09
6360 15448 7.516198 AAGTTTGACTTGAGACAATGCTAAT 57.484 32.000 0.00 0.00 37.00 1.73
6361 15449 8.621532 AAGTTTGACTTGAGACAATGCTAATA 57.378 30.769 0.00 0.00 37.00 0.98
6362 15450 8.798859 AGTTTGACTTGAGACAATGCTAATAT 57.201 30.769 0.00 0.00 30.67 1.28
6363 15451 8.671921 AGTTTGACTTGAGACAATGCTAATATG 58.328 33.333 0.00 0.00 30.67 1.78
6364 15452 8.454106 GTTTGACTTGAGACAATGCTAATATGT 58.546 33.333 0.00 0.00 30.67 2.29
6365 15453 7.543947 TGACTTGAGACAATGCTAATATGTG 57.456 36.000 0.00 0.00 0.00 3.21
6366 15454 7.330262 TGACTTGAGACAATGCTAATATGTGA 58.670 34.615 0.00 0.00 0.00 3.58
6367 15455 7.823799 TGACTTGAGACAATGCTAATATGTGAA 59.176 33.333 0.00 0.00 0.00 3.18
6368 15456 8.565896 ACTTGAGACAATGCTAATATGTGAAA 57.434 30.769 0.00 0.00 0.00 2.69
6369 15457 8.671921 ACTTGAGACAATGCTAATATGTGAAAG 58.328 33.333 0.00 0.00 0.00 2.62
6370 15458 8.565896 TTGAGACAATGCTAATATGTGAAAGT 57.434 30.769 0.00 0.00 0.00 2.66
6371 15459 9.665719 TTGAGACAATGCTAATATGTGAAAGTA 57.334 29.630 0.00 0.00 0.00 2.24
6372 15460 9.665719 TGAGACAATGCTAATATGTGAAAGTAA 57.334 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.604396 TGCACAGCTAATGTACTTACCTAGTA 59.396 38.462 0.00 0.00 41.41 1.82
13 14 5.421056 TGCACAGCTAATGTACTTACCTAGT 59.579 40.000 0.00 0.00 41.41 2.57
35 36 4.443063 GGTTGGTCGTTTTCTTATTGTTGC 59.557 41.667 0.00 0.00 0.00 4.17
56 58 2.840038 TGATGACTTGCTATGTCCTGGT 59.160 45.455 0.00 0.00 33.83 4.00
64 66 3.776969 TGGAGGTCTTGATGACTTGCTAT 59.223 43.478 4.13 0.00 42.16 2.97
70 72 4.877773 AGACTATGGAGGTCTTGATGACT 58.122 43.478 0.00 0.00 44.74 3.41
71 73 6.909550 ATAGACTATGGAGGTCTTGATGAC 57.090 41.667 1.72 0.00 42.96 3.06
74 76 6.435904 GCACTATAGACTATGGAGGTCTTGAT 59.564 42.308 12.39 0.00 42.96 2.57
106 108 6.031964 AGTTAGATCCACCTCTATCAAGGA 57.968 41.667 0.00 0.00 38.87 3.36
110 112 9.607333 AATCAATAGTTAGATCCACCTCTATCA 57.393 33.333 0.00 0.00 0.00 2.15
124 126 9.657419 AAAATCTGGCCAAAAATCAATAGTTAG 57.343 29.630 7.01 0.00 0.00 2.34
129 131 8.373981 TCAAGAAAATCTGGCCAAAAATCAATA 58.626 29.630 7.01 0.00 0.00 1.90
135 137 5.867903 TCTCAAGAAAATCTGGCCAAAAA 57.132 34.783 7.01 0.00 0.00 1.94
196 2211 3.822594 TGCTGTTGCGTTATTAACCTG 57.177 42.857 1.04 0.00 43.34 4.00
197 2212 4.839668 TTTGCTGTTGCGTTATTAACCT 57.160 36.364 1.04 0.00 43.34 3.50
205 2220 5.574055 CAGATTGAATATTTGCTGTTGCGTT 59.426 36.000 0.00 0.00 43.34 4.84
207 2222 4.027132 GCAGATTGAATATTTGCTGTTGCG 60.027 41.667 2.47 0.00 43.34 4.85
239 2255 1.303309 GTATCACATGTGAGCCTGGC 58.697 55.000 30.63 11.65 43.61 4.85
251 2267 4.604156 TGCAACCCCAATTATGTATCACA 58.396 39.130 0.00 0.00 0.00 3.58
257 2273 2.831526 GACCTTGCAACCCCAATTATGT 59.168 45.455 0.00 0.00 0.00 2.29
262 2279 1.416030 GTTTGACCTTGCAACCCCAAT 59.584 47.619 0.00 0.00 0.00 3.16
287 2308 0.464735 ACCACTTGCGTTTGCTACCA 60.465 50.000 0.00 0.00 43.34 3.25
291 2312 3.344064 CAAACCACTTGCGTTTGCT 57.656 47.368 9.11 0.00 42.44 3.91
296 2317 4.640789 TTTTATCACAAACCACTTGCGT 57.359 36.364 0.00 0.00 38.75 5.24
316 2337 6.599356 ATTAACCGCCCTCTTGTTATTTTT 57.401 33.333 0.00 0.00 0.00 1.94
317 2338 6.599356 AATTAACCGCCCTCTTGTTATTTT 57.401 33.333 0.00 0.00 0.00 1.82
318 2339 6.599356 AAATTAACCGCCCTCTTGTTATTT 57.401 33.333 0.00 0.00 0.00 1.40
321 2342 5.591067 CCATAAATTAACCGCCCTCTTGTTA 59.409 40.000 0.00 0.00 0.00 2.41
328 2349 3.375647 ACACCATAAATTAACCGCCCT 57.624 42.857 0.00 0.00 0.00 5.19
352 2373 2.159531 CGTCCAGTTCGGTATGACGTAA 60.160 50.000 0.00 0.00 42.68 3.18
355 2376 0.524816 CCGTCCAGTTCGGTATGACG 60.525 60.000 0.00 0.00 46.05 4.35
385 2754 4.982295 TCACAACAGTAACAGATGAGTTCG 59.018 41.667 0.00 0.00 33.07 3.95
405 2774 7.865707 TGTGAAAAAGAAGCTCTCTATTTCAC 58.134 34.615 23.82 23.82 44.21 3.18
423 2792 5.385198 AGAAAGCCTGGACTATTGTGAAAA 58.615 37.500 0.00 0.00 0.00 2.29
429 2798 3.881688 CCATGAGAAAGCCTGGACTATTG 59.118 47.826 0.00 0.00 0.00 1.90
435 2804 0.034767 CAGCCATGAGAAAGCCTGGA 60.035 55.000 0.00 0.00 0.00 3.86
442 2811 0.040058 ATGGTGGCAGCCATGAGAAA 59.960 50.000 19.75 0.03 46.63 2.52
444 2813 3.418687 ATGGTGGCAGCCATGAGA 58.581 55.556 19.75 1.96 46.63 3.27
471 2840 8.682936 AGAAAGTCTGAGCTTTTATTTCTCAA 57.317 30.769 8.29 0.00 38.64 3.02
487 2856 6.426937 TCGGAAATAAAAGTCCAGAAAGTCTG 59.573 38.462 0.00 0.00 43.91 3.51
488 2857 6.531021 TCGGAAATAAAAGTCCAGAAAGTCT 58.469 36.000 0.00 0.00 33.10 3.24
491 2860 9.722056 CAATATCGGAAATAAAAGTCCAGAAAG 57.278 33.333 0.00 0.00 33.10 2.62
503 2872 5.527214 CACAGTCCAGCAATATCGGAAATAA 59.473 40.000 0.00 0.00 0.00 1.40
510 2879 2.892374 TCACACAGTCCAGCAATATCG 58.108 47.619 0.00 0.00 0.00 2.92
517 2886 1.896220 TTTGGATCACACAGTCCAGC 58.104 50.000 0.00 0.00 44.74 4.85
519 2888 4.280677 GGAAAATTTGGATCACACAGTCCA 59.719 41.667 0.00 0.00 42.55 4.02
524 2893 4.478203 TCTGGGAAAATTTGGATCACACA 58.522 39.130 0.00 0.00 0.00 3.72
525 2894 5.467035 TTCTGGGAAAATTTGGATCACAC 57.533 39.130 0.00 0.00 0.00 3.82
531 2900 2.036604 GGCGTTTCTGGGAAAATTTGGA 59.963 45.455 0.00 0.00 0.00 3.53
532 2901 2.412870 GGCGTTTCTGGGAAAATTTGG 58.587 47.619 0.00 0.00 0.00 3.28
533 2902 2.224161 TGGGCGTTTCTGGGAAAATTTG 60.224 45.455 0.00 0.00 0.00 2.32
534 2903 2.043227 TGGGCGTTTCTGGGAAAATTT 58.957 42.857 0.00 0.00 0.00 1.82
537 2907 1.036707 CTTGGGCGTTTCTGGGAAAA 58.963 50.000 0.00 0.00 0.00 2.29
542 2912 1.908066 GCGTACTTGGGCGTTTCTGG 61.908 60.000 0.00 0.00 0.00 3.86
544 2914 0.949105 CTGCGTACTTGGGCGTTTCT 60.949 55.000 0.00 0.00 0.00 2.52
550 2920 1.090052 CCTAAGCTGCGTACTTGGGC 61.090 60.000 3.26 0.00 38.69 5.36
554 2924 2.500098 TGATTCCCTAAGCTGCGTACTT 59.500 45.455 0.00 0.00 0.00 2.24
575 2945 1.608590 CGAGCACAAGTGAATTTGGGT 59.391 47.619 4.04 0.00 33.95 4.51
586 2956 1.986378 CCTTAGAACGACGAGCACAAG 59.014 52.381 0.00 0.00 0.00 3.16
603 2973 3.161557 AGGCGCTTCCTTGACCTT 58.838 55.556 7.64 0.00 44.75 3.50
641 3011 2.348666 CGTCAAACTAAATGAGCGGGAG 59.651 50.000 0.00 0.00 0.00 4.30
645 3015 4.318121 GCCTATCGTCAAACTAAATGAGCG 60.318 45.833 0.00 0.00 0.00 5.03
648 3018 4.873827 GTGGCCTATCGTCAAACTAAATGA 59.126 41.667 3.32 0.00 0.00 2.57
654 3024 0.981183 TGGTGGCCTATCGTCAAACT 59.019 50.000 3.32 0.00 0.00 2.66
658 3028 2.156098 GTTTTTGGTGGCCTATCGTCA 58.844 47.619 3.32 0.00 0.00 4.35
660 3030 1.074889 AGGTTTTTGGTGGCCTATCGT 59.925 47.619 3.32 0.00 0.00 3.73
661 3031 1.472480 CAGGTTTTTGGTGGCCTATCG 59.528 52.381 3.32 0.00 0.00 2.92
674 3044 1.832167 ATGTGTGCCGGCAGGTTTT 60.832 52.632 33.73 11.48 40.50 2.43
683 3053 0.244450 AAGAATTGCCATGTGTGCCG 59.756 50.000 0.00 0.00 0.00 5.69
686 3056 3.495193 CGAGAAAGAATTGCCATGTGTG 58.505 45.455 0.00 0.00 0.00 3.82
695 3065 6.204301 ACATCAGATATGGCGAGAAAGAATTG 59.796 38.462 0.00 0.00 0.00 2.32
724 3094 2.409715 GCCTTAACTCGACGGTTTGTAC 59.590 50.000 6.96 0.00 0.00 2.90
725 3095 2.035704 TGCCTTAACTCGACGGTTTGTA 59.964 45.455 6.96 0.00 0.00 2.41
726 3096 1.202557 TGCCTTAACTCGACGGTTTGT 60.203 47.619 6.96 0.00 0.00 2.83
732 3102 3.250744 TCTCAAATGCCTTAACTCGACG 58.749 45.455 0.00 0.00 0.00 5.12
741 3111 1.260544 GCAGGGTTCTCAAATGCCTT 58.739 50.000 0.00 0.00 0.00 4.35
742 3112 2.967270 GCAGGGTTCTCAAATGCCT 58.033 52.632 0.00 0.00 0.00 4.75
760 3130 2.558359 GTGGACCTTCTGTGAAATTGGG 59.442 50.000 0.00 0.00 0.00 4.12
762 3132 5.473162 TGTATGTGGACCTTCTGTGAAATTG 59.527 40.000 0.00 0.00 0.00 2.32
774 3144 2.166459 CAGTCATCGTGTATGTGGACCT 59.834 50.000 0.00 0.00 36.89 3.85
778 3148 2.959516 ACACAGTCATCGTGTATGTGG 58.040 47.619 18.67 9.22 45.55 4.17
779 3149 3.367932 GGAACACAGTCATCGTGTATGTG 59.632 47.826 15.81 15.81 46.65 3.21
783 3153 1.274167 GGGGAACACAGTCATCGTGTA 59.726 52.381 0.00 0.00 46.65 2.90
790 3160 0.465460 GCTGTTGGGGAACACAGTCA 60.465 55.000 1.55 0.00 33.53 3.41
796 3166 1.892474 GCTATTTGCTGTTGGGGAACA 59.108 47.619 0.00 0.00 38.95 3.18
797 3167 1.135402 CGCTATTTGCTGTTGGGGAAC 60.135 52.381 0.00 0.00 40.11 3.62
799 3169 0.679640 CCGCTATTTGCTGTTGGGGA 60.680 55.000 0.00 0.00 40.11 4.81
816 3186 3.813166 ACACTCCAATCAAGTTGTTACCG 59.187 43.478 2.11 0.00 36.01 4.02
828 3198 4.307432 TGTTTTCGAGAGACACTCCAATC 58.693 43.478 0.00 0.00 42.18 2.67
840 3210 9.607285 GCACTCTAATTAAATTTGTTTTCGAGA 57.393 29.630 0.00 0.00 0.00 4.04
841 3211 9.612620 AGCACTCTAATTAAATTTGTTTTCGAG 57.387 29.630 0.00 5.52 0.00 4.04
854 3224 9.764363 CCACATCACTATTAGCACTCTAATTAA 57.236 33.333 3.29 0.00 41.45 1.40
855 3225 9.143155 TCCACATCACTATTAGCACTCTAATTA 57.857 33.333 3.29 0.00 41.45 1.40
856 3226 8.023021 TCCACATCACTATTAGCACTCTAATT 57.977 34.615 3.29 0.00 41.45 1.40
857 3227 7.603180 TCCACATCACTATTAGCACTCTAAT 57.397 36.000 3.46 3.46 45.02 1.73
858 3228 7.436933 CATCCACATCACTATTAGCACTCTAA 58.563 38.462 0.00 0.00 38.97 2.10
859 3229 6.015095 CCATCCACATCACTATTAGCACTCTA 60.015 42.308 0.00 0.00 0.00 2.43
860 3230 5.221601 CCATCCACATCACTATTAGCACTCT 60.222 44.000 0.00 0.00 0.00 3.24
861 3231 4.993584 CCATCCACATCACTATTAGCACTC 59.006 45.833 0.00 0.00 0.00 3.51
862 3232 4.744867 GCCATCCACATCACTATTAGCACT 60.745 45.833 0.00 0.00 0.00 4.40
863 3233 3.499918 GCCATCCACATCACTATTAGCAC 59.500 47.826 0.00 0.00 0.00 4.40
864 3234 3.136260 TGCCATCCACATCACTATTAGCA 59.864 43.478 0.00 0.00 0.00 3.49
865 3235 3.743521 TGCCATCCACATCACTATTAGC 58.256 45.455 0.00 0.00 0.00 3.09
866 3236 5.410746 GTCATGCCATCCACATCACTATTAG 59.589 44.000 0.00 0.00 0.00 1.73
867 3237 5.163216 TGTCATGCCATCCACATCACTATTA 60.163 40.000 0.00 0.00 0.00 0.98
868 3238 4.139786 GTCATGCCATCCACATCACTATT 58.860 43.478 0.00 0.00 0.00 1.73
869 3239 3.136992 TGTCATGCCATCCACATCACTAT 59.863 43.478 0.00 0.00 0.00 2.12
870 3240 2.504996 TGTCATGCCATCCACATCACTA 59.495 45.455 0.00 0.00 0.00 2.74
871 3241 1.282738 TGTCATGCCATCCACATCACT 59.717 47.619 0.00 0.00 0.00 3.41
872 3242 1.674441 CTGTCATGCCATCCACATCAC 59.326 52.381 0.00 0.00 0.00 3.06
889 3259 1.072159 GCTTGCCTGTCCTGTCTGT 59.928 57.895 0.00 0.00 0.00 3.41
890 3260 0.322277 ATGCTTGCCTGTCCTGTCTG 60.322 55.000 0.00 0.00 0.00 3.51
916 3286 9.837663 ATACTTTTGTACAGCTGAGCTTGAGCT 62.838 40.741 23.35 13.94 45.73 4.09
917 3287 1.800805 TTGTACAGCTGAGCTTGAGC 58.199 50.000 23.35 10.04 36.40 4.26
918 3288 3.812053 ACTTTTGTACAGCTGAGCTTGAG 59.188 43.478 23.35 13.17 36.40 3.02
919 3289 3.808728 ACTTTTGTACAGCTGAGCTTGA 58.191 40.909 23.35 0.00 36.40 3.02
920 3290 5.625251 CATACTTTTGTACAGCTGAGCTTG 58.375 41.667 23.35 3.04 34.51 4.01
921 3291 4.154918 GCATACTTTTGTACAGCTGAGCTT 59.845 41.667 23.35 0.00 34.51 3.74
922 3292 3.686726 GCATACTTTTGTACAGCTGAGCT 59.313 43.478 23.35 0.00 37.78 4.09
923 3293 3.686726 AGCATACTTTTGTACAGCTGAGC 59.313 43.478 23.35 12.85 43.44 4.26
924 3294 5.625251 CAAGCATACTTTTGTACAGCTGAG 58.375 41.667 23.35 8.63 43.94 3.35
925 3295 4.083324 GCAAGCATACTTTTGTACAGCTGA 60.083 41.667 23.35 0.48 43.94 4.26
931 3301 7.807680 AGTAAGAAGCAAGCATACTTTTGTAC 58.192 34.615 0.00 0.00 37.78 2.90
937 3307 8.831550 GCTTTATAGTAAGAAGCAAGCATACTT 58.168 33.333 13.17 0.00 43.89 2.24
955 3325 1.599542 GGGCAAGTCGCTGCTTTATAG 59.400 52.381 0.00 0.00 42.25 1.31
956 3326 1.663695 GGGCAAGTCGCTGCTTTATA 58.336 50.000 0.00 0.00 42.25 0.98
957 3327 1.369091 CGGGCAAGTCGCTGCTTTAT 61.369 55.000 0.00 0.00 42.25 1.40
975 3346 2.126502 GGCCGCATGTTGGTTTCG 60.127 61.111 7.78 0.00 0.00 3.46
1069 3453 4.796231 ACCATGAGTCGTCGCGCC 62.796 66.667 0.00 0.00 0.00 6.53
1070 3454 3.545481 CACCATGAGTCGTCGCGC 61.545 66.667 0.00 0.00 0.00 6.86
1080 3464 2.756400 GGCAGACACCCACCATGA 59.244 61.111 0.00 0.00 0.00 3.07
1081 3465 2.747460 CGGCAGACACCCACCATG 60.747 66.667 0.00 0.00 0.00 3.66
1082 3466 2.927856 TCGGCAGACACCCACCAT 60.928 61.111 0.00 0.00 0.00 3.55
1168 3555 0.792640 CCACTGTTGATGCACTCGAC 59.207 55.000 0.00 0.00 38.58 4.20
1286 3676 1.970114 GTGTCGTCTGGGTCGGAGA 60.970 63.158 0.00 0.00 0.00 3.71
1324 3717 4.119862 CCATCCTTGTTCATCGTCGTATT 58.880 43.478 0.00 0.00 0.00 1.89
1326 3719 2.737359 GCCATCCTTGTTCATCGTCGTA 60.737 50.000 0.00 0.00 0.00 3.43
1383 3776 2.964925 GTGTTGCAGCCGACGACA 60.965 61.111 0.00 0.00 0.00 4.35
1551 3950 3.383825 AGTTGAAGTAGTTGTCGGTGAGT 59.616 43.478 0.00 0.00 0.00 3.41
1584 3986 0.620030 CCATCATGGTGGAGTGGTCA 59.380 55.000 21.24 0.00 42.02 4.02
1605 4007 0.455633 CGTAGTCACACGGGCTGTAC 60.456 60.000 0.00 0.00 38.26 2.90
1617 4019 1.642037 CGACGAGGAAGGCGTAGTCA 61.642 60.000 0.00 0.00 42.77 3.41
1725 4127 0.824109 CACCGGAGATGGAGCTGTTA 59.176 55.000 9.46 0.00 0.00 2.41
1752 4169 1.353804 GGACGCTTGTTTGCACGAA 59.646 52.632 0.00 0.00 0.00 3.85
1896 4313 5.885449 AGATAGAGCAAGGCATCTTACTT 57.115 39.130 0.00 0.00 27.29 2.24
1976 5171 9.884465 CTTTAGACTTGGTCAAACTTAAAGATG 57.116 33.333 9.04 0.00 34.60 2.90
2101 6642 6.551385 AACATCTCTGTGTTTGATCAAGTC 57.449 37.500 8.41 6.96 39.15 3.01
2111 7319 6.533730 TGTCCTAATCAAACATCTCTGTGTT 58.466 36.000 0.00 0.00 43.78 3.32
2112 7320 6.114187 TGTCCTAATCAAACATCTCTGTGT 57.886 37.500 0.00 0.00 35.22 3.72
2113 7321 7.439157 TTTGTCCTAATCAAACATCTCTGTG 57.561 36.000 0.00 0.00 35.22 3.66
2122 7330 7.981102 AGTTCTAGGTTTGTCCTAATCAAAC 57.019 36.000 11.49 11.49 46.81 2.93
2123 7331 8.215050 TGAAGTTCTAGGTTTGTCCTAATCAAA 58.785 33.333 4.17 0.00 46.81 2.69
2124 7332 7.741785 TGAAGTTCTAGGTTTGTCCTAATCAA 58.258 34.615 4.17 0.00 46.81 2.57
2125 7333 7.311092 TGAAGTTCTAGGTTTGTCCTAATCA 57.689 36.000 4.17 0.00 46.81 2.57
2126 7334 7.878644 ACTTGAAGTTCTAGGTTTGTCCTAATC 59.121 37.037 16.96 0.00 46.81 1.75
2127 7335 7.746703 ACTTGAAGTTCTAGGTTTGTCCTAAT 58.253 34.615 16.96 0.00 46.81 1.73
2128 7336 7.133133 ACTTGAAGTTCTAGGTTTGTCCTAA 57.867 36.000 16.96 0.00 46.81 2.69
2129 7337 6.742559 ACTTGAAGTTCTAGGTTTGTCCTA 57.257 37.500 16.96 0.00 46.10 2.94
2130 7338 6.002653 AACTTGAAGTTCTAGGTTTGTCCT 57.997 37.500 16.96 0.00 41.38 3.85
2131 7339 6.694877 AAACTTGAAGTTCTAGGTTTGTCC 57.305 37.500 11.44 0.00 37.47 4.02
2288 7714 8.797438 ACATCTACGATATCACATCAACAGTAT 58.203 33.333 3.12 0.00 0.00 2.12
2289 7715 8.166422 ACATCTACGATATCACATCAACAGTA 57.834 34.615 3.12 0.00 0.00 2.74
2290 7716 7.043961 ACATCTACGATATCACATCAACAGT 57.956 36.000 3.12 0.00 0.00 3.55
2328 7754 4.016666 TCCCCATATTTGACCAAGTCCATT 60.017 41.667 0.00 0.00 0.00 3.16
2331 7757 3.662759 TCCCCATATTTGACCAAGTCC 57.337 47.619 0.00 0.00 0.00 3.85
2374 8335 9.985730 TTCTCCGTTCTAAAATACTTGAAGTTA 57.014 29.630 1.97 0.00 0.00 2.24
2387 8348 8.196771 TGTAACTAACACTTTCTCCGTTCTAAA 58.803 33.333 0.00 0.00 31.43 1.85
2423 9042 9.757227 CAATTAGGACATTTACCAAGAAAAACA 57.243 29.630 0.00 0.00 0.00 2.83
2424 9043 9.758651 ACAATTAGGACATTTACCAAGAAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
2483 9231 4.084745 GCTGGATTTGCGCATTCATTTATG 60.085 41.667 12.75 0.00 0.00 1.90
2507 9255 6.263842 AGCATACACCGTAGCAACTATACTTA 59.736 38.462 0.00 0.00 0.00 2.24
2532 9280 2.291346 TGTACCCTCCTTCGATGTCTGA 60.291 50.000 0.00 0.00 0.00 3.27
2586 9334 2.037902 TGCATCGTTCAGTTCTTGGGTA 59.962 45.455 0.00 0.00 0.00 3.69
2661 9443 7.568861 CGGAAATGACTTGTGTGTAAGTAGAAC 60.569 40.741 0.00 0.00 40.78 3.01
2662 9444 6.422701 CGGAAATGACTTGTGTGTAAGTAGAA 59.577 38.462 0.00 0.00 40.78 2.10
2664 9446 5.694910 ACGGAAATGACTTGTGTGTAAGTAG 59.305 40.000 0.00 0.00 40.78 2.57
2665 9447 5.603596 ACGGAAATGACTTGTGTGTAAGTA 58.396 37.500 0.00 0.00 40.78 2.24
2668 9450 4.992319 CCTACGGAAATGACTTGTGTGTAA 59.008 41.667 0.00 0.00 0.00 2.41
2670 9452 3.181458 ACCTACGGAAATGACTTGTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
2672 9454 3.764237 ACCTACGGAAATGACTTGTGT 57.236 42.857 0.00 0.00 0.00 3.72
2673 9455 5.467399 TGTTTACCTACGGAAATGACTTGTG 59.533 40.000 0.00 0.00 0.00 3.33
2674 9456 5.613329 TGTTTACCTACGGAAATGACTTGT 58.387 37.500 0.00 0.00 0.00 3.16
2675 9457 6.370442 TGATGTTTACCTACGGAAATGACTTG 59.630 38.462 0.00 0.00 0.00 3.16
2678 9460 6.920569 ATGATGTTTACCTACGGAAATGAC 57.079 37.500 0.00 0.00 0.00 3.06
2681 9463 7.070821 AGGAGTATGATGTTTACCTACGGAAAT 59.929 37.037 0.00 0.00 0.00 2.17
2683 9465 5.895534 AGGAGTATGATGTTTACCTACGGAA 59.104 40.000 0.00 0.00 0.00 4.30
2684 9466 5.301045 CAGGAGTATGATGTTTACCTACGGA 59.699 44.000 0.00 0.00 0.00 4.69
2685 9467 5.301045 TCAGGAGTATGATGTTTACCTACGG 59.699 44.000 0.00 0.00 0.00 4.02
2686 9468 6.387041 TCAGGAGTATGATGTTTACCTACG 57.613 41.667 0.00 0.00 0.00 3.51
2700 9482 8.671987 AGGCATGTATAGTTAATCAGGAGTAT 57.328 34.615 0.00 0.00 0.00 2.12
2702 9484 8.492415 TTAGGCATGTATAGTTAATCAGGAGT 57.508 34.615 0.00 0.00 0.00 3.85
2703 9485 9.950496 ATTTAGGCATGTATAGTTAATCAGGAG 57.050 33.333 0.00 0.00 0.00 3.69
2719 9503 5.879223 ACTGAGAGAGAACAATTTAGGCATG 59.121 40.000 0.00 0.00 0.00 4.06
2720 9504 6.059787 ACTGAGAGAGAACAATTTAGGCAT 57.940 37.500 0.00 0.00 0.00 4.40
2721 9505 5.012046 TGACTGAGAGAGAACAATTTAGGCA 59.988 40.000 0.00 0.00 0.00 4.75
2722 9506 5.350091 GTGACTGAGAGAGAACAATTTAGGC 59.650 44.000 0.00 0.00 0.00 3.93
2723 9507 5.872070 GGTGACTGAGAGAGAACAATTTAGG 59.128 44.000 0.00 0.00 0.00 2.69
2745 9536 9.569122 ACTAGTTTTGTGTATGTATTTTGAGGT 57.431 29.630 0.00 0.00 0.00 3.85
2845 9639 9.567776 TCAGATGGTTGAAGTTTTGTTAGATTA 57.432 29.630 0.00 0.00 0.00 1.75
2849 9643 7.874940 TCATCAGATGGTTGAAGTTTTGTTAG 58.125 34.615 10.67 0.00 0.00 2.34
3004 9807 3.512516 GTCCAATCGGCCTGCAGC 61.513 66.667 8.66 3.68 42.60 5.25
3006 9809 2.268920 GAGTCCAATCGGCCTGCA 59.731 61.111 0.00 0.00 0.00 4.41
3613 11156 7.853929 ACGAGTACACAAAAATGTTTCATGTAC 59.146 33.333 17.54 17.54 41.49 2.90
4193 12914 4.944930 TGAATGTAACCGTTCAATTAGGGG 59.055 41.667 0.00 0.00 42.25 4.79
4245 13127 3.610786 TTGAAACGCGAGCACATTTAA 57.389 38.095 15.93 0.00 0.00 1.52
4246 13128 3.002862 AGTTTGAAACGCGAGCACATTTA 59.997 39.130 15.93 0.00 36.23 1.40
4248 13130 1.333619 AGTTTGAAACGCGAGCACATT 59.666 42.857 15.93 0.00 36.23 2.71
4251 13133 2.560896 CTTAGTTTGAAACGCGAGCAC 58.439 47.619 15.93 1.38 36.23 4.40
4370 13311 1.709578 TTGCACCTACATGGGCAAAA 58.290 45.000 0.00 0.00 43.73 2.44
4453 13401 0.611714 TCGGTAAAAGTCTCTGGCCC 59.388 55.000 0.00 0.00 0.00 5.80
4664 13612 4.524328 AGGATGGTGACTTCATTTGGAAAC 59.476 41.667 0.00 0.00 36.27 2.78
4722 13670 2.069273 CACTTCGAGGCAACAACCTAG 58.931 52.381 0.00 0.00 41.32 3.02
4845 13793 5.213891 TGTGCTGAGTCTTCAAGAATACA 57.786 39.130 0.00 0.00 31.69 2.29
4907 13855 3.495331 TGGTTTAACATCACCATGCAGT 58.505 40.909 0.00 0.00 38.20 4.40
5012 13960 6.040504 ACATGTCGCCTATGATGTTTCTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
5042 13990 0.462789 GTAGGTACACGGGGTCCATG 59.537 60.000 3.40 0.00 0.00 3.66
5048 13996 1.338389 CCTGTTTGTAGGTACACGGGG 60.338 57.143 0.00 0.00 35.64 5.73
5099 14047 3.691609 GCTCTAAGATGACAACCCCAAAG 59.308 47.826 0.00 0.00 0.00 2.77
5153 14101 6.437793 GGAAGCTCCTCACTAGGCTATTATTA 59.562 42.308 0.00 0.00 43.31 0.98
5194 14142 0.464870 CTCAGTCATGCTCTCCCCAG 59.535 60.000 0.00 0.00 0.00 4.45
5219 14167 4.858692 CCTGTTGTTGCAATTTCCTTATCG 59.141 41.667 0.59 0.00 0.00 2.92
5382 14330 4.274950 TGTTGAAAGTTGAAACTCCGATCC 59.725 41.667 0.00 0.00 38.57 3.36
5385 14333 4.638421 ACATGTTGAAAGTTGAAACTCCGA 59.362 37.500 0.00 0.00 38.57 4.55
5450 14408 5.181690 TCTTGGAACAGCAAATACAACAC 57.818 39.130 0.00 0.00 42.39 3.32
5462 14420 8.154649 ACAGTAGTACAAATTTCTTGGAACAG 57.845 34.615 2.52 0.00 42.39 3.16
5504 14462 4.000325 TCCACACATTTGGTCATACGAAG 59.000 43.478 0.00 0.00 37.93 3.79
5508 14466 5.895636 TCAATCCACACATTTGGTCATAC 57.104 39.130 0.00 0.00 37.93 2.39
5522 14480 6.451064 AGTTTAATCGGGAAATCAATCCAC 57.549 37.500 0.00 0.00 41.55 4.02
5581 14654 5.199723 TCTAATGATCTCACTGAGCTCTGT 58.800 41.667 19.51 19.51 31.32 3.41
5591 14664 8.498054 TGGAAGATGTTTTCTAATGATCTCAC 57.502 34.615 0.00 0.00 33.05 3.51
5603 14676 8.621286 ACGGATATTGTTATGGAAGATGTTTTC 58.379 33.333 0.00 0.00 0.00 2.29
5627 14703 6.426980 TGTACTAGTGATGTACCTAACACG 57.573 41.667 5.39 0.00 42.09 4.49
5629 14705 9.856162 TCATATGTACTAGTGATGTACCTAACA 57.144 33.333 5.39 0.00 43.86 2.41
5671 14756 0.178950 TCTGAGGCAGGTGTCTCTGT 60.179 55.000 12.62 0.00 46.41 3.41
5687 14772 9.850628 TTTGAATTGAATCTTAGAAGCAATCTG 57.149 29.630 11.43 0.00 39.30 2.90
5722 14807 9.813446 AGACGTCCCACTATATTTTTACTTAAG 57.187 33.333 13.01 0.00 0.00 1.85
5725 14810 8.200120 GGTAGACGTCCCACTATATTTTTACTT 58.800 37.037 13.01 0.00 0.00 2.24
5743 14828 0.820891 ACGACTGTGTGGGTAGACGT 60.821 55.000 0.00 0.00 39.64 4.34
5809 14897 1.913419 GATGGTGGTACTTCCCTTGGA 59.087 52.381 0.00 0.00 34.77 3.53
5833 14921 4.094442 CGTAAGCTTATTGTCCTTTGGTCC 59.906 45.833 9.88 0.00 0.00 4.46
5846 14934 9.983804 GCAAAACTAAAGTTATCGTAAGCTTAT 57.016 29.630 9.88 0.00 37.25 1.73
5847 14935 9.211485 AGCAAAACTAAAGTTATCGTAAGCTTA 57.789 29.630 0.86 0.86 37.25 3.09
5848 14936 8.095937 AGCAAAACTAAAGTTATCGTAAGCTT 57.904 30.769 3.48 3.48 37.25 3.74
5849 14937 7.668525 AGCAAAACTAAAGTTATCGTAAGCT 57.331 32.000 0.00 0.00 37.25 3.74
5850 14938 7.270579 CCAAGCAAAACTAAAGTTATCGTAAGC 59.729 37.037 0.00 0.00 37.25 3.09
5851 14939 8.287503 ACCAAGCAAAACTAAAGTTATCGTAAG 58.712 33.333 0.00 0.00 37.25 2.34
5852 14940 8.071368 CACCAAGCAAAACTAAAGTTATCGTAA 58.929 33.333 0.00 0.00 37.25 3.18
5853 14941 7.227116 ACACCAAGCAAAACTAAAGTTATCGTA 59.773 33.333 0.00 0.00 37.25 3.43
5854 14942 6.038936 ACACCAAGCAAAACTAAAGTTATCGT 59.961 34.615 0.00 0.00 37.25 3.73
5855 14943 6.435428 ACACCAAGCAAAACTAAAGTTATCG 58.565 36.000 0.00 0.00 37.25 2.92
5856 14944 8.565416 AGTACACCAAGCAAAACTAAAGTTATC 58.435 33.333 0.00 0.00 37.25 1.75
5857 14945 8.459911 AGTACACCAAGCAAAACTAAAGTTAT 57.540 30.769 0.00 0.00 37.25 1.89
5858 14946 7.868906 AGTACACCAAGCAAAACTAAAGTTA 57.131 32.000 0.00 0.00 37.25 2.24
5859 14947 6.769134 AGTACACCAAGCAAAACTAAAGTT 57.231 33.333 0.00 0.00 40.50 2.66
5860 14948 6.485648 CCTAGTACACCAAGCAAAACTAAAGT 59.514 38.462 0.00 0.00 0.00 2.66
5861 14949 6.072673 CCCTAGTACACCAAGCAAAACTAAAG 60.073 42.308 0.00 0.00 0.00 1.85
5862 14950 5.766174 CCCTAGTACACCAAGCAAAACTAAA 59.234 40.000 0.00 0.00 0.00 1.85
5863 14951 5.310451 CCCTAGTACACCAAGCAAAACTAA 58.690 41.667 0.00 0.00 0.00 2.24
5864 14952 4.804934 GCCCTAGTACACCAAGCAAAACTA 60.805 45.833 0.00 0.00 0.00 2.24
5865 14953 3.751518 CCCTAGTACACCAAGCAAAACT 58.248 45.455 0.00 0.00 0.00 2.66
5866 14954 2.228103 GCCCTAGTACACCAAGCAAAAC 59.772 50.000 0.00 0.00 0.00 2.43
5867 14955 2.510613 GCCCTAGTACACCAAGCAAAA 58.489 47.619 0.00 0.00 0.00 2.44
5868 14956 1.609580 CGCCCTAGTACACCAAGCAAA 60.610 52.381 0.00 0.00 0.00 3.68
5869 14957 0.036765 CGCCCTAGTACACCAAGCAA 60.037 55.000 0.00 0.00 0.00 3.91
5870 14958 1.594833 CGCCCTAGTACACCAAGCA 59.405 57.895 0.00 0.00 0.00 3.91
5871 14959 1.814169 GCGCCCTAGTACACCAAGC 60.814 63.158 0.00 0.00 0.00 4.01
5872 14960 1.153429 GGCGCCCTAGTACACCAAG 60.153 63.158 18.11 0.00 0.00 3.61
5873 14961 1.268992 ATGGCGCCCTAGTACACCAA 61.269 55.000 26.77 0.00 0.00 3.67
5874 14962 0.397394 TATGGCGCCCTAGTACACCA 60.397 55.000 26.77 0.00 0.00 4.17
5875 14963 0.033090 GTATGGCGCCCTAGTACACC 59.967 60.000 26.77 1.14 0.00 4.16
5876 14964 1.038280 AGTATGGCGCCCTAGTACAC 58.962 55.000 26.77 8.83 0.00 2.90
5877 14965 2.158564 ACTAGTATGGCGCCCTAGTACA 60.159 50.000 30.75 11.91 39.58 2.90
5878 14966 2.512705 ACTAGTATGGCGCCCTAGTAC 58.487 52.381 30.75 23.53 39.58 2.73
5879 14967 2.965671 ACTAGTATGGCGCCCTAGTA 57.034 50.000 30.75 25.98 39.58 1.82
5880 14968 2.083628 AACTAGTATGGCGCCCTAGT 57.916 50.000 28.10 28.10 42.34 2.57
5881 14969 3.573110 AGTAAACTAGTATGGCGCCCTAG 59.427 47.826 27.06 27.06 35.41 3.02
5882 14970 3.569491 AGTAAACTAGTATGGCGCCCTA 58.431 45.455 26.77 16.85 0.00 3.53
5883 14971 2.364647 GAGTAAACTAGTATGGCGCCCT 59.635 50.000 26.77 18.16 0.00 5.19
5884 14972 2.364647 AGAGTAAACTAGTATGGCGCCC 59.635 50.000 26.77 8.84 0.00 6.13
5885 14973 3.067742 TCAGAGTAAACTAGTATGGCGCC 59.932 47.826 22.73 22.73 0.00 6.53
5886 14974 4.303086 TCAGAGTAAACTAGTATGGCGC 57.697 45.455 0.00 0.00 0.00 6.53
5887 14975 6.331061 ACTTTCAGAGTAAACTAGTATGGCG 58.669 40.000 0.00 0.00 36.65 5.69
5888 14976 7.548967 AGACTTTCAGAGTAAACTAGTATGGC 58.451 38.462 0.00 0.00 39.19 4.40
5891 14979 9.411189 CCCTAGACTTTCAGAGTAAACTAGTAT 57.589 37.037 0.00 0.00 39.19 2.12
5892 14980 7.338957 GCCCTAGACTTTCAGAGTAAACTAGTA 59.661 40.741 0.00 0.00 39.19 1.82
5893 14981 6.153170 GCCCTAGACTTTCAGAGTAAACTAGT 59.847 42.308 0.00 0.00 39.19 2.57
5894 14982 6.406065 GGCCCTAGACTTTCAGAGTAAACTAG 60.406 46.154 0.00 0.00 39.19 2.57
5895 14983 5.421374 GGCCCTAGACTTTCAGAGTAAACTA 59.579 44.000 0.00 0.00 39.19 2.24
5896 14984 4.223255 GGCCCTAGACTTTCAGAGTAAACT 59.777 45.833 0.00 0.00 39.19 2.66
5897 14985 4.223255 AGGCCCTAGACTTTCAGAGTAAAC 59.777 45.833 0.00 0.00 39.19 2.01
5898 14986 4.426704 AGGCCCTAGACTTTCAGAGTAAA 58.573 43.478 0.00 0.00 39.19 2.01
5899 14987 4.024670 GAGGCCCTAGACTTTCAGAGTAA 58.975 47.826 0.00 0.00 39.19 2.24
5900 14988 3.633418 GAGGCCCTAGACTTTCAGAGTA 58.367 50.000 0.00 0.00 39.19 2.59
5901 14989 2.462723 GAGGCCCTAGACTTTCAGAGT 58.537 52.381 0.00 0.00 42.70 3.24
5902 14990 1.407258 CGAGGCCCTAGACTTTCAGAG 59.593 57.143 0.00 0.00 0.00 3.35
5903 14991 1.475403 CGAGGCCCTAGACTTTCAGA 58.525 55.000 0.00 0.00 0.00 3.27
5904 14992 0.179097 GCGAGGCCCTAGACTTTCAG 60.179 60.000 0.00 0.00 0.00 3.02
5905 14993 1.614241 GGCGAGGCCCTAGACTTTCA 61.614 60.000 0.00 0.00 44.06 2.69
5906 14994 1.144276 GGCGAGGCCCTAGACTTTC 59.856 63.158 0.00 0.00 44.06 2.62
5907 14995 3.310652 GGCGAGGCCCTAGACTTT 58.689 61.111 0.00 0.00 44.06 2.66
5922 15010 3.638592 AACTACGGGGCACATGGGC 62.639 63.158 12.85 12.85 42.44 5.36
5923 15011 1.001393 AAACTACGGGGCACATGGG 60.001 57.895 0.00 0.00 0.00 4.00
5924 15012 1.366111 CGAAACTACGGGGCACATGG 61.366 60.000 0.00 0.00 0.00 3.66
5925 15013 2.086510 CGAAACTACGGGGCACATG 58.913 57.895 0.00 0.00 0.00 3.21
5926 15014 4.609995 CGAAACTACGGGGCACAT 57.390 55.556 0.00 0.00 0.00 3.21
5934 15022 6.019152 CCAATGAAAATGTACCGAAACTACG 58.981 40.000 0.00 0.00 0.00 3.51
5935 15023 5.798434 GCCAATGAAAATGTACCGAAACTAC 59.202 40.000 0.00 0.00 0.00 2.73
5936 15024 5.106078 GGCCAATGAAAATGTACCGAAACTA 60.106 40.000 0.00 0.00 0.00 2.24
5937 15025 4.321675 GGCCAATGAAAATGTACCGAAACT 60.322 41.667 0.00 0.00 0.00 2.66
5938 15026 3.924073 GGCCAATGAAAATGTACCGAAAC 59.076 43.478 0.00 0.00 0.00 2.78
5939 15027 3.574396 TGGCCAATGAAAATGTACCGAAA 59.426 39.130 0.61 0.00 0.00 3.46
5940 15028 3.157881 TGGCCAATGAAAATGTACCGAA 58.842 40.909 0.61 0.00 0.00 4.30
5941 15029 2.796557 TGGCCAATGAAAATGTACCGA 58.203 42.857 0.61 0.00 0.00 4.69
5942 15030 3.584406 TTGGCCAATGAAAATGTACCG 57.416 42.857 16.05 0.00 0.00 4.02
5943 15031 4.566360 CGAATTGGCCAATGAAAATGTACC 59.434 41.667 31.28 9.42 0.00 3.34
5944 15032 5.406649 TCGAATTGGCCAATGAAAATGTAC 58.593 37.500 31.28 12.52 0.00 2.90
5945 15033 5.651387 TCGAATTGGCCAATGAAAATGTA 57.349 34.783 31.28 8.77 0.00 2.29
5946 15034 4.533919 TCGAATTGGCCAATGAAAATGT 57.466 36.364 31.28 14.04 0.00 2.71
5947 15035 4.201744 GCTTCGAATTGGCCAATGAAAATG 60.202 41.667 31.28 18.26 0.00 2.32
5948 15036 3.934579 GCTTCGAATTGGCCAATGAAAAT 59.065 39.130 31.28 15.61 0.00 1.82
5949 15037 3.324993 GCTTCGAATTGGCCAATGAAAA 58.675 40.909 31.28 21.65 0.00 2.29
5950 15038 2.353605 GGCTTCGAATTGGCCAATGAAA 60.354 45.455 31.28 21.97 44.69 2.69
5951 15039 1.204467 GGCTTCGAATTGGCCAATGAA 59.796 47.619 31.28 26.34 44.69 2.57
5952 15040 0.817013 GGCTTCGAATTGGCCAATGA 59.183 50.000 31.28 21.52 44.69 2.57
5953 15041 3.350766 GGCTTCGAATTGGCCAATG 57.649 52.632 31.28 19.53 44.69 2.82
5957 15045 1.388547 TATGTGGCTTCGAATTGGCC 58.611 50.000 17.57 17.57 45.45 5.36
5958 15046 3.715628 AATATGTGGCTTCGAATTGGC 57.284 42.857 0.00 0.48 0.00 4.52
5959 15047 5.519927 GGAAAAATATGTGGCTTCGAATTGG 59.480 40.000 0.00 0.00 0.00 3.16
5960 15048 5.519927 GGGAAAAATATGTGGCTTCGAATTG 59.480 40.000 0.00 0.00 0.00 2.32
5961 15049 5.186797 TGGGAAAAATATGTGGCTTCGAATT 59.813 36.000 0.00 0.00 0.00 2.17
5962 15050 4.709397 TGGGAAAAATATGTGGCTTCGAAT 59.291 37.500 0.00 0.00 0.00 3.34
5963 15051 4.082845 TGGGAAAAATATGTGGCTTCGAA 58.917 39.130 0.00 0.00 0.00 3.71
5964 15052 3.691575 TGGGAAAAATATGTGGCTTCGA 58.308 40.909 0.00 0.00 0.00 3.71
5965 15053 3.181487 CCTGGGAAAAATATGTGGCTTCG 60.181 47.826 0.00 0.00 0.00 3.79
5966 15054 3.769300 ACCTGGGAAAAATATGTGGCTTC 59.231 43.478 0.00 0.00 0.00 3.86
5967 15055 3.515104 CACCTGGGAAAAATATGTGGCTT 59.485 43.478 0.00 0.00 0.00 4.35
5968 15056 3.099141 CACCTGGGAAAAATATGTGGCT 58.901 45.455 0.00 0.00 0.00 4.75
5969 15057 2.831526 ACACCTGGGAAAAATATGTGGC 59.168 45.455 0.00 0.00 0.00 5.01
5970 15058 5.125417 CAGTACACCTGGGAAAAATATGTGG 59.875 44.000 0.00 0.00 37.54 4.17
5971 15059 5.943416 TCAGTACACCTGGGAAAAATATGTG 59.057 40.000 0.00 0.00 41.83 3.21
5972 15060 6.134535 TCAGTACACCTGGGAAAAATATGT 57.865 37.500 0.00 0.00 41.83 2.29
5973 15061 5.590259 CCTCAGTACACCTGGGAAAAATATG 59.410 44.000 0.00 0.00 45.27 1.78
5974 15062 5.340027 CCCTCAGTACACCTGGGAAAAATAT 60.340 44.000 0.00 0.00 45.27 1.28
5975 15063 4.018779 CCCTCAGTACACCTGGGAAAAATA 60.019 45.833 0.00 0.00 45.27 1.40
5976 15064 3.245264 CCCTCAGTACACCTGGGAAAAAT 60.245 47.826 0.00 0.00 45.27 1.82
5977 15065 2.107552 CCCTCAGTACACCTGGGAAAAA 59.892 50.000 0.00 0.00 45.27 1.94
5978 15066 1.702957 CCCTCAGTACACCTGGGAAAA 59.297 52.381 0.00 0.00 45.27 2.29
5979 15067 1.358152 CCCTCAGTACACCTGGGAAA 58.642 55.000 0.00 0.00 45.27 3.13
5980 15068 0.192566 ACCCTCAGTACACCTGGGAA 59.807 55.000 16.60 0.00 45.27 3.97
5981 15069 0.544357 CACCCTCAGTACACCTGGGA 60.544 60.000 16.60 0.00 45.27 4.37
5982 15070 0.836400 ACACCCTCAGTACACCTGGG 60.836 60.000 0.00 10.43 41.76 4.45
5983 15071 0.321671 CACACCCTCAGTACACCTGG 59.678 60.000 0.00 0.00 41.83 4.45
5984 15072 0.320771 GCACACCCTCAGTACACCTG 60.321 60.000 0.00 0.00 42.97 4.00
5985 15073 0.471971 AGCACACCCTCAGTACACCT 60.472 55.000 0.00 0.00 0.00 4.00
5986 15074 0.320771 CAGCACACCCTCAGTACACC 60.321 60.000 0.00 0.00 0.00 4.16
5987 15075 0.393077 ACAGCACACCCTCAGTACAC 59.607 55.000 0.00 0.00 0.00 2.90
5988 15076 1.893137 CTACAGCACACCCTCAGTACA 59.107 52.381 0.00 0.00 0.00 2.90
5989 15077 2.168496 TCTACAGCACACCCTCAGTAC 58.832 52.381 0.00 0.00 0.00 2.73
5990 15078 2.597578 TCTACAGCACACCCTCAGTA 57.402 50.000 0.00 0.00 0.00 2.74
5991 15079 1.944177 ATCTACAGCACACCCTCAGT 58.056 50.000 0.00 0.00 0.00 3.41
5992 15080 3.340814 AAATCTACAGCACACCCTCAG 57.659 47.619 0.00 0.00 0.00 3.35
5993 15081 4.901197 TTAAATCTACAGCACACCCTCA 57.099 40.909 0.00 0.00 0.00 3.86
5994 15082 5.246307 AGTTTAAATCTACAGCACACCCTC 58.754 41.667 0.00 0.00 0.00 4.30
5995 15083 5.242795 AGTTTAAATCTACAGCACACCCT 57.757 39.130 0.00 0.00 0.00 4.34
5996 15084 5.959618 AAGTTTAAATCTACAGCACACCC 57.040 39.130 0.00 0.00 0.00 4.61
6013 15101 9.389755 ACAAAGCCAACAACATTATTAAAGTTT 57.610 25.926 0.00 0.00 0.00 2.66
6014 15102 8.956533 ACAAAGCCAACAACATTATTAAAGTT 57.043 26.923 0.00 0.00 0.00 2.66
6018 15106 8.930760 GCAATACAAAGCCAACAACATTATTAA 58.069 29.630 0.00 0.00 0.00 1.40
6019 15107 8.310382 AGCAATACAAAGCCAACAACATTATTA 58.690 29.630 0.00 0.00 0.00 0.98
6020 15108 7.160726 AGCAATACAAAGCCAACAACATTATT 58.839 30.769 0.00 0.00 0.00 1.40
6021 15109 6.700352 AGCAATACAAAGCCAACAACATTAT 58.300 32.000 0.00 0.00 0.00 1.28
6022 15110 6.095432 AGCAATACAAAGCCAACAACATTA 57.905 33.333 0.00 0.00 0.00 1.90
6023 15111 4.959723 AGCAATACAAAGCCAACAACATT 58.040 34.783 0.00 0.00 0.00 2.71
6024 15112 4.605640 AGCAATACAAAGCCAACAACAT 57.394 36.364 0.00 0.00 0.00 2.71
6025 15113 4.399004 AAGCAATACAAAGCCAACAACA 57.601 36.364 0.00 0.00 0.00 3.33
6026 15114 7.420184 AATTAAGCAATACAAAGCCAACAAC 57.580 32.000 0.00 0.00 0.00 3.32
6027 15115 7.930865 AGAAATTAAGCAATACAAAGCCAACAA 59.069 29.630 0.00 0.00 0.00 2.83
6028 15116 7.441017 AGAAATTAAGCAATACAAAGCCAACA 58.559 30.769 0.00 0.00 0.00 3.33
6029 15117 7.889589 AGAAATTAAGCAATACAAAGCCAAC 57.110 32.000 0.00 0.00 0.00 3.77
6030 15118 7.095271 GCAAGAAATTAAGCAATACAAAGCCAA 60.095 33.333 0.00 0.00 0.00 4.52
6031 15119 6.368516 GCAAGAAATTAAGCAATACAAAGCCA 59.631 34.615 0.00 0.00 0.00 4.75
6032 15120 6.368516 TGCAAGAAATTAAGCAATACAAAGCC 59.631 34.615 0.00 0.00 33.48 4.35
6033 15121 7.350110 TGCAAGAAATTAAGCAATACAAAGC 57.650 32.000 0.00 0.00 33.48 3.51
6034 15122 9.195411 TCTTGCAAGAAATTAAGCAATACAAAG 57.805 29.630 26.61 0.00 44.85 2.77
6035 15123 9.195411 CTCTTGCAAGAAATTAAGCAATACAAA 57.805 29.630 28.16 1.40 44.85 2.83
6036 15124 7.329226 GCTCTTGCAAGAAATTAAGCAATACAA 59.671 33.333 28.16 1.74 44.85 2.41
6037 15125 6.808212 GCTCTTGCAAGAAATTAAGCAATACA 59.192 34.615 28.16 2.12 44.85 2.29
6038 15126 7.214473 GCTCTTGCAAGAAATTAAGCAATAC 57.786 36.000 28.16 1.11 44.85 1.89
6055 15143 0.455633 CATCGTTGCCTTGCTCTTGC 60.456 55.000 0.00 0.00 40.20 4.01
6056 15144 0.455633 GCATCGTTGCCTTGCTCTTG 60.456 55.000 7.24 0.00 43.38 3.02
6057 15145 1.878775 GCATCGTTGCCTTGCTCTT 59.121 52.632 7.24 0.00 43.38 2.85
6058 15146 3.583383 GCATCGTTGCCTTGCTCT 58.417 55.556 7.24 0.00 43.38 4.09
6067 15155 1.259770 CTCACGGATGATGCATCGTTG 59.740 52.381 22.04 18.75 41.35 4.10
6068 15156 1.575244 CTCACGGATGATGCATCGTT 58.425 50.000 22.04 12.01 41.35 3.85
6069 15157 0.249615 CCTCACGGATGATGCATCGT 60.250 55.000 21.36 21.36 41.35 3.73
6070 15158 1.563435 GCCTCACGGATGATGCATCG 61.563 60.000 21.34 12.68 43.72 3.84
6071 15159 1.233285 GGCCTCACGGATGATGCATC 61.233 60.000 20.14 20.14 45.46 3.91
6072 15160 1.228063 GGCCTCACGGATGATGCAT 60.228 57.895 0.00 0.00 45.46 3.96
6073 15161 2.190313 GGCCTCACGGATGATGCA 59.810 61.111 0.00 0.00 45.46 3.96
6074 15162 1.890979 CTGGCCTCACGGATGATGC 60.891 63.158 3.32 0.00 43.58 3.91
6075 15163 0.812811 CACTGGCCTCACGGATGATG 60.813 60.000 3.32 0.00 33.22 3.07
6076 15164 1.524002 CACTGGCCTCACGGATGAT 59.476 57.895 3.32 0.00 33.22 2.45
6077 15165 2.981302 CACTGGCCTCACGGATGA 59.019 61.111 3.32 0.00 0.00 2.92
6078 15166 1.960040 TAGCACTGGCCTCACGGATG 61.960 60.000 3.32 0.00 42.56 3.51
6079 15167 1.264749 TTAGCACTGGCCTCACGGAT 61.265 55.000 3.32 0.00 42.56 4.18
6080 15168 1.911269 TTAGCACTGGCCTCACGGA 60.911 57.895 3.32 0.00 42.56 4.69
6081 15169 1.741770 GTTAGCACTGGCCTCACGG 60.742 63.158 3.32 0.00 42.56 4.94
6082 15170 2.094659 CGTTAGCACTGGCCTCACG 61.095 63.158 3.32 0.00 42.56 4.35
6083 15171 1.004918 ACGTTAGCACTGGCCTCAC 60.005 57.895 3.32 0.00 42.56 3.51
6084 15172 1.292223 GACGTTAGCACTGGCCTCA 59.708 57.895 3.32 0.00 42.56 3.86
6085 15173 1.448013 GGACGTTAGCACTGGCCTC 60.448 63.158 3.32 0.00 42.56 4.70
6086 15174 2.172483 CTGGACGTTAGCACTGGCCT 62.172 60.000 3.32 0.00 42.56 5.19
6087 15175 1.741770 CTGGACGTTAGCACTGGCC 60.742 63.158 0.00 0.00 42.56 5.36
6088 15176 1.741770 CCTGGACGTTAGCACTGGC 60.742 63.158 0.00 0.00 41.61 4.85
6089 15177 1.741770 GCCTGGACGTTAGCACTGG 60.742 63.158 0.00 0.00 0.00 4.00
6090 15178 0.602638 TTGCCTGGACGTTAGCACTG 60.603 55.000 0.00 0.00 34.37 3.66
6091 15179 0.107831 TTTGCCTGGACGTTAGCACT 59.892 50.000 0.00 0.00 34.37 4.40
6092 15180 1.165270 ATTTGCCTGGACGTTAGCAC 58.835 50.000 0.00 0.00 34.37 4.40
6093 15181 1.904287 AATTTGCCTGGACGTTAGCA 58.096 45.000 0.00 0.00 0.00 3.49
6094 15182 5.054477 TCTATAATTTGCCTGGACGTTAGC 58.946 41.667 0.00 0.00 0.00 3.09
6095 15183 9.088512 GATATCTATAATTTGCCTGGACGTTAG 57.911 37.037 0.00 0.00 0.00 2.34
6096 15184 7.758076 CGATATCTATAATTTGCCTGGACGTTA 59.242 37.037 0.00 0.00 0.00 3.18
6097 15185 6.590292 CGATATCTATAATTTGCCTGGACGTT 59.410 38.462 0.00 0.00 0.00 3.99
6098 15186 6.071560 TCGATATCTATAATTTGCCTGGACGT 60.072 38.462 0.00 0.00 0.00 4.34
6099 15187 6.330278 TCGATATCTATAATTTGCCTGGACG 58.670 40.000 0.00 0.00 0.00 4.79
6100 15188 7.489757 GTCTCGATATCTATAATTTGCCTGGAC 59.510 40.741 0.00 0.00 0.00 4.02
6101 15189 7.178451 TGTCTCGATATCTATAATTTGCCTGGA 59.822 37.037 0.00 0.00 0.00 3.86
6102 15190 7.323420 TGTCTCGATATCTATAATTTGCCTGG 58.677 38.462 0.34 0.00 0.00 4.45
6103 15191 8.939201 ATGTCTCGATATCTATAATTTGCCTG 57.061 34.615 0.34 0.00 0.00 4.85
6104 15192 9.950496 AAATGTCTCGATATCTATAATTTGCCT 57.050 29.630 0.34 0.00 0.00 4.75
6105 15193 9.979270 CAAATGTCTCGATATCTATAATTTGCC 57.021 33.333 0.34 0.00 0.00 4.52
6113 15201 8.811017 AGTCCATTCAAATGTCTCGATATCTAT 58.189 33.333 0.34 0.00 34.60 1.98
6114 15202 8.183104 AGTCCATTCAAATGTCTCGATATCTA 57.817 34.615 0.34 0.00 34.60 1.98
6115 15203 7.060383 AGTCCATTCAAATGTCTCGATATCT 57.940 36.000 0.34 0.00 34.60 1.98
6116 15204 7.225538 ACAAGTCCATTCAAATGTCTCGATATC 59.774 37.037 2.31 0.00 34.60 1.63
6117 15205 7.050377 ACAAGTCCATTCAAATGTCTCGATAT 58.950 34.615 2.31 0.00 34.60 1.63
6118 15206 6.406370 ACAAGTCCATTCAAATGTCTCGATA 58.594 36.000 2.31 0.00 34.60 2.92
6119 15207 5.248640 ACAAGTCCATTCAAATGTCTCGAT 58.751 37.500 2.31 0.00 34.60 3.59
6120 15208 4.641396 ACAAGTCCATTCAAATGTCTCGA 58.359 39.130 2.31 0.00 34.60 4.04
6121 15209 5.149273 CAACAAGTCCATTCAAATGTCTCG 58.851 41.667 2.31 0.00 34.60 4.04
6122 15210 6.076981 ACAACAAGTCCATTCAAATGTCTC 57.923 37.500 2.31 0.00 34.60 3.36
6123 15211 6.016276 GGTACAACAAGTCCATTCAAATGTCT 60.016 38.462 0.00 0.00 34.60 3.41
6124 15212 6.016276 AGGTACAACAAGTCCATTCAAATGTC 60.016 38.462 0.00 0.00 34.60 3.06
6125 15213 5.833131 AGGTACAACAAGTCCATTCAAATGT 59.167 36.000 0.00 0.00 34.60 2.71
6126 15214 6.331369 AGGTACAACAAGTCCATTCAAATG 57.669 37.500 0.00 0.00 36.17 2.32
6127 15215 6.239289 CCAAGGTACAACAAGTCCATTCAAAT 60.239 38.462 0.00 0.00 0.00 2.32
6128 15216 5.068460 CCAAGGTACAACAAGTCCATTCAAA 59.932 40.000 0.00 0.00 0.00 2.69
6129 15217 4.582656 CCAAGGTACAACAAGTCCATTCAA 59.417 41.667 0.00 0.00 0.00 2.69
6130 15218 4.141287 CCAAGGTACAACAAGTCCATTCA 58.859 43.478 0.00 0.00 0.00 2.57
6131 15219 4.215613 GTCCAAGGTACAACAAGTCCATTC 59.784 45.833 0.00 0.00 0.00 2.67
6132 15220 4.142038 GTCCAAGGTACAACAAGTCCATT 58.858 43.478 0.00 0.00 0.00 3.16
6133 15221 3.751518 GTCCAAGGTACAACAAGTCCAT 58.248 45.455 0.00 0.00 0.00 3.41
6134 15222 2.484065 CGTCCAAGGTACAACAAGTCCA 60.484 50.000 0.00 0.00 0.00 4.02
6135 15223 2.140717 CGTCCAAGGTACAACAAGTCC 58.859 52.381 0.00 0.00 0.00 3.85
6136 15224 2.140717 CCGTCCAAGGTACAACAAGTC 58.859 52.381 0.00 0.00 0.00 3.01
6137 15225 1.764134 TCCGTCCAAGGTACAACAAGT 59.236 47.619 0.00 0.00 0.00 3.16
6138 15226 2.140717 GTCCGTCCAAGGTACAACAAG 58.859 52.381 0.00 0.00 0.00 3.16
6139 15227 1.764134 AGTCCGTCCAAGGTACAACAA 59.236 47.619 0.00 0.00 0.00 2.83
6140 15228 1.416243 AGTCCGTCCAAGGTACAACA 58.584 50.000 0.00 0.00 0.00 3.33
6141 15229 2.560105 ACTAGTCCGTCCAAGGTACAAC 59.440 50.000 0.00 0.00 0.00 3.32
6142 15230 2.880443 ACTAGTCCGTCCAAGGTACAA 58.120 47.619 0.00 0.00 0.00 2.41
6143 15231 2.592102 ACTAGTCCGTCCAAGGTACA 57.408 50.000 0.00 0.00 0.00 2.90
6144 15232 3.615155 AGTACTAGTCCGTCCAAGGTAC 58.385 50.000 0.00 0.00 0.00 3.34
6145 15233 4.307032 AAGTACTAGTCCGTCCAAGGTA 57.693 45.455 0.00 0.00 0.00 3.08
6146 15234 2.895242 AGTACTAGTCCGTCCAAGGT 57.105 50.000 0.00 0.00 0.00 3.50
6147 15235 5.848833 ATTAAGTACTAGTCCGTCCAAGG 57.151 43.478 0.00 0.00 0.00 3.61
6148 15236 7.255070 GGAGTATTAAGTACTAGTCCGTCCAAG 60.255 44.444 0.00 0.00 43.66 3.61
6149 15237 6.543831 GGAGTATTAAGTACTAGTCCGTCCAA 59.456 42.308 0.00 0.00 43.66 3.53
6150 15238 6.058183 GGAGTATTAAGTACTAGTCCGTCCA 58.942 44.000 0.00 0.00 43.66 4.02
6151 15239 5.471797 GGGAGTATTAAGTACTAGTCCGTCC 59.528 48.000 0.00 6.83 43.66 4.79
6152 15240 6.295249 AGGGAGTATTAAGTACTAGTCCGTC 58.705 44.000 0.00 0.37 43.66 4.79
6153 15241 6.259346 AGGGAGTATTAAGTACTAGTCCGT 57.741 41.667 0.00 8.33 43.66 4.69
6154 15242 5.704978 GGAGGGAGTATTAAGTACTAGTCCG 59.295 48.000 0.00 0.00 43.66 4.79
6155 15243 5.704978 CGGAGGGAGTATTAAGTACTAGTCC 59.295 48.000 0.00 8.28 43.66 3.85
6156 15244 6.295249 ACGGAGGGAGTATTAAGTACTAGTC 58.705 44.000 0.00 0.00 43.66 2.59
6157 15245 6.259346 ACGGAGGGAGTATTAAGTACTAGT 57.741 41.667 0.00 0.00 43.66 2.57
6158 15246 7.579761 AAACGGAGGGAGTATTAAGTACTAG 57.420 40.000 0.00 0.00 43.66 2.57
6159 15247 7.961326 AAAACGGAGGGAGTATTAAGTACTA 57.039 36.000 0.00 0.00 43.66 1.82
6160 15248 6.864151 AAAACGGAGGGAGTATTAAGTACT 57.136 37.500 0.00 0.00 46.27 2.73
6161 15249 9.605275 AATAAAAACGGAGGGAGTATTAAGTAC 57.395 33.333 0.00 0.00 0.00 2.73
6170 15258 9.524496 AACTTTATAAATAAAAACGGAGGGAGT 57.476 29.630 0.00 0.00 32.39 3.85
6206 15294 9.567776 TGTGGAAGTTTAGATTGTTTTCTATGA 57.432 29.630 0.00 0.00 0.00 2.15
6261 15349 7.546667 CCAAATCAATACCATTATGCCATTAGC 59.453 37.037 0.00 0.00 44.14 3.09
6262 15350 8.587608 ACCAAATCAATACCATTATGCCATTAG 58.412 33.333 0.00 0.00 0.00 1.73
6263 15351 8.489676 ACCAAATCAATACCATTATGCCATTA 57.510 30.769 0.00 0.00 0.00 1.90
6264 15352 7.377696 ACCAAATCAATACCATTATGCCATT 57.622 32.000 0.00 0.00 0.00 3.16
6265 15353 6.999705 ACCAAATCAATACCATTATGCCAT 57.000 33.333 0.00 0.00 0.00 4.40
6266 15354 8.366401 CAATACCAAATCAATACCATTATGCCA 58.634 33.333 0.00 0.00 0.00 4.92
6267 15355 8.367156 ACAATACCAAATCAATACCATTATGCC 58.633 33.333 0.00 0.00 0.00 4.40
6268 15356 9.195411 CACAATACCAAATCAATACCATTATGC 57.805 33.333 0.00 0.00 0.00 3.14
6269 15357 9.695526 CCACAATACCAAATCAATACCATTATG 57.304 33.333 0.00 0.00 0.00 1.90
6270 15358 9.653516 TCCACAATACCAAATCAATACCATTAT 57.346 29.630 0.00 0.00 0.00 1.28
6271 15359 9.653516 ATCCACAATACCAAATCAATACCATTA 57.346 29.630 0.00 0.00 0.00 1.90
6272 15360 7.969690 TCCACAATACCAAATCAATACCATT 57.030 32.000 0.00 0.00 0.00 3.16
6273 15361 7.564660 ACATCCACAATACCAAATCAATACCAT 59.435 33.333 0.00 0.00 0.00 3.55
6274 15362 6.894654 ACATCCACAATACCAAATCAATACCA 59.105 34.615 0.00 0.00 0.00 3.25
6275 15363 7.346751 ACATCCACAATACCAAATCAATACC 57.653 36.000 0.00 0.00 0.00 2.73
6276 15364 8.465999 TGAACATCCACAATACCAAATCAATAC 58.534 33.333 0.00 0.00 0.00 1.89
6277 15365 8.586879 TGAACATCCACAATACCAAATCAATA 57.413 30.769 0.00 0.00 0.00 1.90
6278 15366 7.479352 TGAACATCCACAATACCAAATCAAT 57.521 32.000 0.00 0.00 0.00 2.57
6279 15367 6.907853 TGAACATCCACAATACCAAATCAA 57.092 33.333 0.00 0.00 0.00 2.57
6280 15368 8.586879 TTATGAACATCCACAATACCAAATCA 57.413 30.769 0.00 0.00 0.00 2.57
6307 15395 7.663043 ACCTTTGACCAGGTTTATACAAAAA 57.337 32.000 0.00 0.00 45.76 1.94
6318 15406 7.703888 TCAAACTTTGAAACCTTTGACCAGGT 61.704 38.462 1.47 0.00 41.08 4.00
6319 15407 4.736126 AACTTTGAAACCTTTGACCAGG 57.264 40.909 0.00 0.00 40.23 4.45
6320 15408 5.576774 GTCAAACTTTGAAACCTTTGACCAG 59.423 40.000 17.64 0.00 43.35 4.00
6321 15409 5.474825 GTCAAACTTTGAAACCTTTGACCA 58.525 37.500 17.64 0.00 43.35 4.02
6323 15411 6.866248 TCAAGTCAAACTTTGAAACCTTTGAC 59.134 34.615 19.35 19.35 46.84 3.18
6324 15412 6.987386 TCAAGTCAAACTTTGAAACCTTTGA 58.013 32.000 5.76 8.46 42.15 2.69
6325 15413 7.062255 GTCTCAAGTCAAACTTTGAAACCTTTG 59.938 37.037 5.76 6.68 42.15 2.77
6326 15414 7.090808 GTCTCAAGTCAAACTTTGAAACCTTT 58.909 34.615 5.76 0.00 42.15 3.11
6327 15415 6.208599 TGTCTCAAGTCAAACTTTGAAACCTT 59.791 34.615 5.76 3.42 42.15 3.50
6328 15416 5.710099 TGTCTCAAGTCAAACTTTGAAACCT 59.290 36.000 5.76 0.00 42.15 3.50
6329 15417 5.949735 TGTCTCAAGTCAAACTTTGAAACC 58.050 37.500 5.76 0.00 42.15 3.27
6330 15418 7.463251 GCATTGTCTCAAGTCAAACTTTGAAAC 60.463 37.037 5.76 0.00 42.15 2.78
6331 15419 6.531240 GCATTGTCTCAAGTCAAACTTTGAAA 59.469 34.615 5.76 0.00 42.15 2.69
6332 15420 6.035843 GCATTGTCTCAAGTCAAACTTTGAA 58.964 36.000 5.76 0.00 42.15 2.69
6333 15421 5.357878 AGCATTGTCTCAAGTCAAACTTTGA 59.642 36.000 0.00 0.00 36.03 2.69
6334 15422 5.585390 AGCATTGTCTCAAGTCAAACTTTG 58.415 37.500 0.00 0.00 36.03 2.77
6335 15423 5.841957 AGCATTGTCTCAAGTCAAACTTT 57.158 34.783 0.00 0.00 36.03 2.66
6336 15424 6.942532 TTAGCATTGTCTCAAGTCAAACTT 57.057 33.333 0.00 0.00 39.39 2.66
6337 15425 8.671921 CATATTAGCATTGTCTCAAGTCAAACT 58.328 33.333 0.00 0.00 0.00 2.66
6338 15426 8.454106 ACATATTAGCATTGTCTCAAGTCAAAC 58.546 33.333 0.00 0.00 0.00 2.93
6339 15427 8.453320 CACATATTAGCATTGTCTCAAGTCAAA 58.547 33.333 0.00 0.00 0.00 2.69
6340 15428 7.823799 TCACATATTAGCATTGTCTCAAGTCAA 59.176 33.333 0.00 0.00 0.00 3.18
6341 15429 7.330262 TCACATATTAGCATTGTCTCAAGTCA 58.670 34.615 0.00 0.00 0.00 3.41
6342 15430 7.776933 TCACATATTAGCATTGTCTCAAGTC 57.223 36.000 0.00 0.00 0.00 3.01
6343 15431 8.565896 TTTCACATATTAGCATTGTCTCAAGT 57.434 30.769 0.00 0.00 0.00 3.16
6344 15432 8.671921 ACTTTCACATATTAGCATTGTCTCAAG 58.328 33.333 0.00 0.00 0.00 3.02
6345 15433 8.565896 ACTTTCACATATTAGCATTGTCTCAA 57.434 30.769 0.00 0.00 0.00 3.02
6346 15434 9.665719 TTACTTTCACATATTAGCATTGTCTCA 57.334 29.630 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.