Multiple sequence alignment - TraesCS1D01G016700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G016700 | chr1D | 100.000 | 3341 | 0 | 0 | 1 | 3341 | 7509095 | 7512435 | 0.000000e+00 | 6170.0 |
1 | TraesCS1D01G016700 | chr1D | 84.073 | 879 | 91 | 27 | 2300 | 3139 | 7761538 | 7762406 | 0.000000e+00 | 802.0 |
2 | TraesCS1D01G016700 | chr1D | 83.959 | 879 | 92 | 27 | 2300 | 3139 | 7731581 | 7732449 | 0.000000e+00 | 797.0 |
3 | TraesCS1D01G016700 | chr1D | 93.367 | 196 | 6 | 4 | 942 | 1130 | 7037800 | 7037605 | 1.960000e-72 | 283.0 |
4 | TraesCS1D01G016700 | chr1B | 90.611 | 2407 | 161 | 33 | 803 | 3187 | 9712830 | 9710467 | 0.000000e+00 | 3133.0 |
5 | TraesCS1D01G016700 | chr1B | 87.331 | 592 | 43 | 12 | 89 | 667 | 664387376 | 664386804 | 0.000000e+00 | 649.0 |
6 | TraesCS1D01G016700 | chr1B | 90.640 | 406 | 28 | 5 | 2738 | 3139 | 9923993 | 9924392 | 6.350000e-147 | 531.0 |
7 | TraesCS1D01G016700 | chr1B | 93.333 | 360 | 15 | 2 | 2837 | 3187 | 9706397 | 9706038 | 1.060000e-144 | 523.0 |
8 | TraesCS1D01G016700 | chr1B | 93.056 | 360 | 16 | 2 | 2837 | 3187 | 9708610 | 9708251 | 4.940000e-143 | 518.0 |
9 | TraesCS1D01G016700 | chr1B | 87.390 | 341 | 38 | 4 | 337 | 674 | 373111405 | 373111067 | 1.450000e-103 | 387.0 |
10 | TraesCS1D01G016700 | chr1B | 90.948 | 232 | 13 | 3 | 102 | 332 | 684286554 | 684286778 | 4.190000e-79 | 305.0 |
11 | TraesCS1D01G016700 | chr1B | 100.000 | 48 | 0 | 0 | 3140 | 3187 | 9924428 | 9924475 | 4.590000e-14 | 89.8 |
12 | TraesCS1D01G016700 | chr2B | 86.378 | 1615 | 173 | 33 | 948 | 2533 | 72589215 | 72587619 | 0.000000e+00 | 1720.0 |
13 | TraesCS1D01G016700 | chr2D | 85.970 | 1618 | 174 | 25 | 948 | 2533 | 45547954 | 45546358 | 0.000000e+00 | 1681.0 |
14 | TraesCS1D01G016700 | chr2D | 88.305 | 590 | 42 | 12 | 89 | 667 | 376948416 | 376947843 | 0.000000e+00 | 682.0 |
15 | TraesCS1D01G016700 | chr2D | 81.722 | 569 | 51 | 29 | 102 | 667 | 571746160 | 571746678 | 3.080000e-115 | 425.0 |
16 | TraesCS1D01G016700 | chr1A | 97.612 | 670 | 11 | 4 | 1 | 667 | 14809088 | 14809755 | 0.000000e+00 | 1144.0 |
17 | TraesCS1D01G016700 | chr1A | 84.000 | 875 | 94 | 24 | 2300 | 3139 | 9197142 | 9198005 | 0.000000e+00 | 798.0 |
18 | TraesCS1D01G016700 | chr1A | 83.808 | 877 | 94 | 24 | 2303 | 3139 | 9158319 | 9159187 | 0.000000e+00 | 789.0 |
19 | TraesCS1D01G016700 | chr1A | 91.964 | 112 | 8 | 1 | 3231 | 3341 | 9123291 | 9123402 | 4.460000e-34 | 156.0 |
20 | TraesCS1D01G016700 | chr3B | 95.301 | 681 | 16 | 7 | 1 | 668 | 215888926 | 215889603 | 0.000000e+00 | 1066.0 |
21 | TraesCS1D01G016700 | chr4A | 85.876 | 885 | 120 | 5 | 942 | 1824 | 727127646 | 727128527 | 0.000000e+00 | 937.0 |
22 | TraesCS1D01G016700 | chr4A | 85.792 | 549 | 75 | 3 | 945 | 1493 | 727190770 | 727190225 | 2.230000e-161 | 579.0 |
23 | TraesCS1D01G016700 | chr4A | 82.456 | 570 | 47 | 26 | 102 | 668 | 729509489 | 729508970 | 1.830000e-122 | 449.0 |
24 | TraesCS1D01G016700 | chr4A | 90.031 | 321 | 29 | 3 | 1888 | 2208 | 727128630 | 727128947 | 2.400000e-111 | 412.0 |
25 | TraesCS1D01G016700 | chrUn | 84.429 | 867 | 88 | 20 | 2309 | 3139 | 276777778 | 276776923 | 0.000000e+00 | 809.0 |
26 | TraesCS1D01G016700 | chrUn | 84.429 | 867 | 88 | 20 | 2309 | 3139 | 278891098 | 278890243 | 0.000000e+00 | 809.0 |
27 | TraesCS1D01G016700 | chr7D | 88.364 | 593 | 41 | 13 | 89 | 670 | 177093471 | 177092896 | 0.000000e+00 | 688.0 |
28 | TraesCS1D01G016700 | chr5B | 81.913 | 575 | 51 | 28 | 102 | 673 | 15120392 | 15119868 | 1.420000e-118 | 436.0 |
29 | TraesCS1D01G016700 | chr5B | 81.787 | 582 | 50 | 27 | 89 | 667 | 605327091 | 605326563 | 1.420000e-118 | 436.0 |
30 | TraesCS1D01G016700 | chr5B | 88.623 | 334 | 31 | 7 | 337 | 667 | 341579174 | 341578845 | 1.870000e-107 | 399.0 |
31 | TraesCS1D01G016700 | chr6A | 81.293 | 588 | 53 | 28 | 86 | 669 | 50197595 | 50198129 | 1.110000e-114 | 424.0 |
32 | TraesCS1D01G016700 | chr6A | 81.371 | 569 | 52 | 27 | 102 | 667 | 106803993 | 106804510 | 6.670000e-112 | 414.0 |
33 | TraesCS1D01G016700 | chr2A | 89.254 | 335 | 30 | 5 | 337 | 668 | 3767033 | 3766702 | 6.670000e-112 | 414.0 |
34 | TraesCS1D01G016700 | chr2A | 88.024 | 334 | 34 | 5 | 337 | 667 | 766842545 | 766842875 | 1.120000e-104 | 390.0 |
35 | TraesCS1D01G016700 | chr6B | 73.671 | 771 | 163 | 25 | 1056 | 1818 | 712331924 | 712332662 | 2.560000e-66 | 263.0 |
36 | TraesCS1D01G016700 | chr5D | 93.103 | 58 | 4 | 0 | 696 | 753 | 20209446 | 20209503 | 5.940000e-13 | 86.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G016700 | chr1D | 7509095 | 7512435 | 3340 | False | 6170.000000 | 6170 | 100.000000 | 1 | 3341 | 1 | chr1D.!!$F1 | 3340 |
1 | TraesCS1D01G016700 | chr1D | 7761538 | 7762406 | 868 | False | 802.000000 | 802 | 84.073000 | 2300 | 3139 | 1 | chr1D.!!$F3 | 839 |
2 | TraesCS1D01G016700 | chr1D | 7731581 | 7732449 | 868 | False | 797.000000 | 797 | 83.959000 | 2300 | 3139 | 1 | chr1D.!!$F2 | 839 |
3 | TraesCS1D01G016700 | chr1B | 9706038 | 9712830 | 6792 | True | 1391.333333 | 3133 | 92.333333 | 803 | 3187 | 3 | chr1B.!!$R3 | 2384 |
4 | TraesCS1D01G016700 | chr1B | 664386804 | 664387376 | 572 | True | 649.000000 | 649 | 87.331000 | 89 | 667 | 1 | chr1B.!!$R2 | 578 |
5 | TraesCS1D01G016700 | chr2B | 72587619 | 72589215 | 1596 | True | 1720.000000 | 1720 | 86.378000 | 948 | 2533 | 1 | chr2B.!!$R1 | 1585 |
6 | TraesCS1D01G016700 | chr2D | 45546358 | 45547954 | 1596 | True | 1681.000000 | 1681 | 85.970000 | 948 | 2533 | 1 | chr2D.!!$R1 | 1585 |
7 | TraesCS1D01G016700 | chr2D | 376947843 | 376948416 | 573 | True | 682.000000 | 682 | 88.305000 | 89 | 667 | 1 | chr2D.!!$R2 | 578 |
8 | TraesCS1D01G016700 | chr2D | 571746160 | 571746678 | 518 | False | 425.000000 | 425 | 81.722000 | 102 | 667 | 1 | chr2D.!!$F1 | 565 |
9 | TraesCS1D01G016700 | chr1A | 14809088 | 14809755 | 667 | False | 1144.000000 | 1144 | 97.612000 | 1 | 667 | 1 | chr1A.!!$F4 | 666 |
10 | TraesCS1D01G016700 | chr1A | 9197142 | 9198005 | 863 | False | 798.000000 | 798 | 84.000000 | 2300 | 3139 | 1 | chr1A.!!$F3 | 839 |
11 | TraesCS1D01G016700 | chr1A | 9158319 | 9159187 | 868 | False | 789.000000 | 789 | 83.808000 | 2303 | 3139 | 1 | chr1A.!!$F2 | 836 |
12 | TraesCS1D01G016700 | chr3B | 215888926 | 215889603 | 677 | False | 1066.000000 | 1066 | 95.301000 | 1 | 668 | 1 | chr3B.!!$F1 | 667 |
13 | TraesCS1D01G016700 | chr4A | 727127646 | 727128947 | 1301 | False | 674.500000 | 937 | 87.953500 | 942 | 2208 | 2 | chr4A.!!$F1 | 1266 |
14 | TraesCS1D01G016700 | chr4A | 727190225 | 727190770 | 545 | True | 579.000000 | 579 | 85.792000 | 945 | 1493 | 1 | chr4A.!!$R1 | 548 |
15 | TraesCS1D01G016700 | chr4A | 729508970 | 729509489 | 519 | True | 449.000000 | 449 | 82.456000 | 102 | 668 | 1 | chr4A.!!$R2 | 566 |
16 | TraesCS1D01G016700 | chrUn | 276776923 | 276777778 | 855 | True | 809.000000 | 809 | 84.429000 | 2309 | 3139 | 1 | chrUn.!!$R1 | 830 |
17 | TraesCS1D01G016700 | chrUn | 278890243 | 278891098 | 855 | True | 809.000000 | 809 | 84.429000 | 2309 | 3139 | 1 | chrUn.!!$R2 | 830 |
18 | TraesCS1D01G016700 | chr7D | 177092896 | 177093471 | 575 | True | 688.000000 | 688 | 88.364000 | 89 | 670 | 1 | chr7D.!!$R1 | 581 |
19 | TraesCS1D01G016700 | chr5B | 15119868 | 15120392 | 524 | True | 436.000000 | 436 | 81.913000 | 102 | 673 | 1 | chr5B.!!$R1 | 571 |
20 | TraesCS1D01G016700 | chr5B | 605326563 | 605327091 | 528 | True | 436.000000 | 436 | 81.787000 | 89 | 667 | 1 | chr5B.!!$R3 | 578 |
21 | TraesCS1D01G016700 | chr6A | 50197595 | 50198129 | 534 | False | 424.000000 | 424 | 81.293000 | 86 | 669 | 1 | chr6A.!!$F1 | 583 |
22 | TraesCS1D01G016700 | chr6A | 106803993 | 106804510 | 517 | False | 414.000000 | 414 | 81.371000 | 102 | 667 | 1 | chr6A.!!$F2 | 565 |
23 | TraesCS1D01G016700 | chr6B | 712331924 | 712332662 | 738 | False | 263.000000 | 263 | 73.671000 | 1056 | 1818 | 1 | chr6B.!!$F1 | 762 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
740 | 798 | 0.110056 | GCATGCACGGTCAAGTCTTG | 60.11 | 55.0 | 14.21 | 6.21 | 0.00 | 3.02 | F |
2042 | 2172 | 0.110486 | AGCAGGAAACCGTGTCCAAT | 59.89 | 50.0 | 10.55 | 0.00 | 37.65 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2076 | 2206 | 0.456824 | CGCTGGATCCCGTCGATATG | 60.457 | 60.0 | 9.9 | 0.0 | 0.00 | 1.78 | R |
3234 | 7832 | 1.358152 | AATCGTCCCAGGTTTCTCCA | 58.642 | 50.0 | 0.0 | 0.0 | 39.02 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
297 | 338 | 8.424274 | AAAGGATCACTTGACAAAATTTTCAC | 57.576 | 30.769 | 0.00 | 0.00 | 39.96 | 3.18 |
298 | 339 | 7.111247 | AGGATCACTTGACAAAATTTTCACA | 57.889 | 32.000 | 0.00 | 1.69 | 0.00 | 3.58 |
299 | 340 | 7.555087 | AGGATCACTTGACAAAATTTTCACAA | 58.445 | 30.769 | 0.00 | 9.26 | 0.00 | 3.33 |
300 | 341 | 8.040132 | AGGATCACTTGACAAAATTTTCACAAA | 58.960 | 29.630 | 15.42 | 6.44 | 0.00 | 2.83 |
301 | 342 | 8.829612 | GGATCACTTGACAAAATTTTCACAAAT | 58.170 | 29.630 | 15.42 | 7.38 | 33.72 | 2.32 |
302 | 343 | 9.853921 | GATCACTTGACAAAATTTTCACAAATC | 57.146 | 29.630 | 15.42 | 12.77 | 30.80 | 2.17 |
303 | 344 | 8.768957 | TCACTTGACAAAATTTTCACAAATCA | 57.231 | 26.923 | 15.42 | 5.93 | 30.80 | 2.57 |
335 | 377 | 6.899892 | AGTTCTTCTAAAGATCCCCTGATT | 57.100 | 37.500 | 0.00 | 0.00 | 37.38 | 2.57 |
420 | 475 | 8.415950 | TGAAGCCTACATTCAAATTTAGGAAA | 57.584 | 30.769 | 15.86 | 0.00 | 39.93 | 3.13 |
574 | 631 | 6.645003 | TGCTATGTACTGGATATTACTTTGCG | 59.355 | 38.462 | 0.00 | 0.00 | 31.38 | 4.85 |
676 | 734 | 2.279451 | CGGCGCTGCACATAGCTA | 60.279 | 61.111 | 7.64 | 0.00 | 45.94 | 3.32 |
677 | 735 | 2.305853 | CGGCGCTGCACATAGCTAG | 61.306 | 63.158 | 7.64 | 0.00 | 45.94 | 3.42 |
678 | 736 | 2.602322 | GGCGCTGCACATAGCTAGC | 61.602 | 63.158 | 6.62 | 6.62 | 45.94 | 3.42 |
679 | 737 | 1.593750 | GCGCTGCACATAGCTAGCT | 60.594 | 57.895 | 23.12 | 23.12 | 45.94 | 3.32 |
680 | 738 | 1.156645 | GCGCTGCACATAGCTAGCTT | 61.157 | 55.000 | 24.88 | 8.10 | 45.94 | 3.74 |
681 | 739 | 1.869754 | GCGCTGCACATAGCTAGCTTA | 60.870 | 52.381 | 24.88 | 9.42 | 45.94 | 3.09 |
682 | 740 | 2.681706 | CGCTGCACATAGCTAGCTTAT | 58.318 | 47.619 | 24.88 | 11.38 | 45.94 | 1.73 |
683 | 741 | 2.665537 | CGCTGCACATAGCTAGCTTATC | 59.334 | 50.000 | 24.88 | 8.69 | 45.94 | 1.75 |
684 | 742 | 2.999355 | GCTGCACATAGCTAGCTTATCC | 59.001 | 50.000 | 24.88 | 8.69 | 45.94 | 2.59 |
685 | 743 | 3.555795 | GCTGCACATAGCTAGCTTATCCA | 60.556 | 47.826 | 24.88 | 12.71 | 45.94 | 3.41 |
686 | 744 | 4.829968 | CTGCACATAGCTAGCTTATCCAT | 58.170 | 43.478 | 24.88 | 6.86 | 45.94 | 3.41 |
687 | 745 | 4.572909 | TGCACATAGCTAGCTTATCCATG | 58.427 | 43.478 | 24.88 | 21.10 | 45.94 | 3.66 |
688 | 746 | 4.040829 | TGCACATAGCTAGCTTATCCATGT | 59.959 | 41.667 | 24.88 | 21.77 | 45.94 | 3.21 |
689 | 747 | 5.245977 | TGCACATAGCTAGCTTATCCATGTA | 59.754 | 40.000 | 24.88 | 9.03 | 45.94 | 2.29 |
690 | 748 | 6.166279 | GCACATAGCTAGCTTATCCATGTAA | 58.834 | 40.000 | 24.88 | 0.00 | 41.15 | 2.41 |
691 | 749 | 6.091441 | GCACATAGCTAGCTTATCCATGTAAC | 59.909 | 42.308 | 24.88 | 16.01 | 41.15 | 2.50 |
692 | 750 | 7.154656 | CACATAGCTAGCTTATCCATGTAACA | 58.845 | 38.462 | 24.88 | 0.00 | 0.00 | 2.41 |
693 | 751 | 7.116948 | CACATAGCTAGCTTATCCATGTAACAC | 59.883 | 40.741 | 24.88 | 0.00 | 0.00 | 3.32 |
694 | 752 | 5.614324 | AGCTAGCTTATCCATGTAACACA | 57.386 | 39.130 | 12.68 | 0.00 | 0.00 | 3.72 |
695 | 753 | 5.360591 | AGCTAGCTTATCCATGTAACACAC | 58.639 | 41.667 | 12.68 | 0.00 | 0.00 | 3.82 |
696 | 754 | 5.104941 | AGCTAGCTTATCCATGTAACACACA | 60.105 | 40.000 | 12.68 | 0.00 | 42.69 | 3.72 |
697 | 755 | 5.235186 | GCTAGCTTATCCATGTAACACACAG | 59.765 | 44.000 | 7.70 | 0.00 | 41.51 | 3.66 |
698 | 756 | 3.941483 | AGCTTATCCATGTAACACACAGC | 59.059 | 43.478 | 0.00 | 0.00 | 41.51 | 4.40 |
699 | 757 | 3.941483 | GCTTATCCATGTAACACACAGCT | 59.059 | 43.478 | 0.00 | 0.00 | 41.51 | 4.24 |
700 | 758 | 5.104941 | AGCTTATCCATGTAACACACAGCTA | 60.105 | 40.000 | 0.00 | 0.00 | 41.51 | 3.32 |
701 | 759 | 5.235186 | GCTTATCCATGTAACACACAGCTAG | 59.765 | 44.000 | 0.00 | 0.00 | 41.51 | 3.42 |
702 | 760 | 2.972625 | TCCATGTAACACACAGCTAGC | 58.027 | 47.619 | 6.62 | 6.62 | 41.51 | 3.42 |
703 | 761 | 2.567169 | TCCATGTAACACACAGCTAGCT | 59.433 | 45.455 | 12.68 | 12.68 | 41.51 | 3.32 |
704 | 762 | 3.007940 | TCCATGTAACACACAGCTAGCTT | 59.992 | 43.478 | 16.46 | 1.38 | 41.51 | 3.74 |
705 | 763 | 4.221924 | TCCATGTAACACACAGCTAGCTTA | 59.778 | 41.667 | 16.46 | 0.23 | 41.51 | 3.09 |
706 | 764 | 5.104941 | TCCATGTAACACACAGCTAGCTTAT | 60.105 | 40.000 | 16.46 | 3.00 | 41.51 | 1.73 |
707 | 765 | 5.235186 | CCATGTAACACACAGCTAGCTTATC | 59.765 | 44.000 | 16.46 | 0.89 | 41.51 | 1.75 |
708 | 766 | 4.755411 | TGTAACACACAGCTAGCTTATCC | 58.245 | 43.478 | 16.46 | 0.00 | 31.89 | 2.59 |
709 | 767 | 3.981071 | AACACACAGCTAGCTTATCCA | 57.019 | 42.857 | 16.46 | 0.00 | 0.00 | 3.41 |
710 | 768 | 3.252974 | ACACACAGCTAGCTTATCCAC | 57.747 | 47.619 | 16.46 | 0.00 | 0.00 | 4.02 |
711 | 769 | 2.567169 | ACACACAGCTAGCTTATCCACA | 59.433 | 45.455 | 16.46 | 0.00 | 0.00 | 4.17 |
712 | 770 | 2.932614 | CACACAGCTAGCTTATCCACAC | 59.067 | 50.000 | 16.46 | 0.00 | 0.00 | 3.82 |
713 | 771 | 2.567169 | ACACAGCTAGCTTATCCACACA | 59.433 | 45.455 | 16.46 | 0.00 | 0.00 | 3.72 |
714 | 772 | 3.007940 | ACACAGCTAGCTTATCCACACAA | 59.992 | 43.478 | 16.46 | 0.00 | 0.00 | 3.33 |
715 | 773 | 3.372206 | CACAGCTAGCTTATCCACACAAC | 59.628 | 47.826 | 16.46 | 0.00 | 0.00 | 3.32 |
716 | 774 | 2.939103 | CAGCTAGCTTATCCACACAACC | 59.061 | 50.000 | 16.46 | 0.00 | 0.00 | 3.77 |
717 | 775 | 2.571653 | AGCTAGCTTATCCACACAACCA | 59.428 | 45.455 | 12.68 | 0.00 | 0.00 | 3.67 |
718 | 776 | 3.200825 | AGCTAGCTTATCCACACAACCAT | 59.799 | 43.478 | 12.68 | 0.00 | 0.00 | 3.55 |
719 | 777 | 3.313526 | GCTAGCTTATCCACACAACCATG | 59.686 | 47.826 | 7.70 | 0.00 | 0.00 | 3.66 |
720 | 778 | 3.439857 | AGCTTATCCACACAACCATGT | 57.560 | 42.857 | 0.00 | 0.00 | 41.61 | 3.21 |
736 | 794 | 3.343972 | GTGCATGCACGGTCAAGT | 58.656 | 55.556 | 33.20 | 0.00 | 37.19 | 3.16 |
737 | 795 | 1.207593 | GTGCATGCACGGTCAAGTC | 59.792 | 57.895 | 33.20 | 9.23 | 37.19 | 3.01 |
738 | 796 | 1.071299 | TGCATGCACGGTCAAGTCT | 59.929 | 52.632 | 18.46 | 0.00 | 0.00 | 3.24 |
739 | 797 | 0.534877 | TGCATGCACGGTCAAGTCTT | 60.535 | 50.000 | 18.46 | 0.00 | 0.00 | 3.01 |
740 | 798 | 0.110056 | GCATGCACGGTCAAGTCTTG | 60.110 | 55.000 | 14.21 | 6.21 | 0.00 | 3.02 |
741 | 799 | 1.511850 | CATGCACGGTCAAGTCTTGA | 58.488 | 50.000 | 11.36 | 11.36 | 37.33 | 3.02 |
742 | 800 | 2.079158 | CATGCACGGTCAAGTCTTGAT | 58.921 | 47.619 | 18.08 | 0.00 | 42.47 | 2.57 |
743 | 801 | 2.254546 | TGCACGGTCAAGTCTTGATT | 57.745 | 45.000 | 18.08 | 3.83 | 42.47 | 2.57 |
744 | 802 | 3.394674 | TGCACGGTCAAGTCTTGATTA | 57.605 | 42.857 | 18.08 | 0.00 | 42.47 | 1.75 |
745 | 803 | 3.937814 | TGCACGGTCAAGTCTTGATTAT | 58.062 | 40.909 | 18.08 | 4.36 | 42.47 | 1.28 |
746 | 804 | 3.932710 | TGCACGGTCAAGTCTTGATTATC | 59.067 | 43.478 | 18.08 | 5.56 | 42.47 | 1.75 |
747 | 805 | 3.309954 | GCACGGTCAAGTCTTGATTATCC | 59.690 | 47.826 | 18.08 | 13.03 | 42.47 | 2.59 |
748 | 806 | 4.759782 | CACGGTCAAGTCTTGATTATCCT | 58.240 | 43.478 | 18.08 | 3.19 | 42.47 | 3.24 |
749 | 807 | 5.681437 | GCACGGTCAAGTCTTGATTATCCTA | 60.681 | 44.000 | 18.08 | 0.00 | 42.47 | 2.94 |
750 | 808 | 6.338146 | CACGGTCAAGTCTTGATTATCCTAA | 58.662 | 40.000 | 18.08 | 0.00 | 42.47 | 2.69 |
751 | 809 | 6.255887 | CACGGTCAAGTCTTGATTATCCTAAC | 59.744 | 42.308 | 18.08 | 3.02 | 42.47 | 2.34 |
752 | 810 | 6.070995 | ACGGTCAAGTCTTGATTATCCTAACA | 60.071 | 38.462 | 18.08 | 0.00 | 42.47 | 2.41 |
753 | 811 | 6.986817 | CGGTCAAGTCTTGATTATCCTAACAT | 59.013 | 38.462 | 18.08 | 0.00 | 42.47 | 2.71 |
754 | 812 | 7.495934 | CGGTCAAGTCTTGATTATCCTAACATT | 59.504 | 37.037 | 18.08 | 0.00 | 42.47 | 2.71 |
755 | 813 | 8.831550 | GGTCAAGTCTTGATTATCCTAACATTC | 58.168 | 37.037 | 18.08 | 0.71 | 42.47 | 2.67 |
756 | 814 | 9.606631 | GTCAAGTCTTGATTATCCTAACATTCT | 57.393 | 33.333 | 18.08 | 0.00 | 42.47 | 2.40 |
769 | 827 | 7.348080 | TCCTAACATTCTACACTATCACTGG | 57.652 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
770 | 828 | 7.123383 | TCCTAACATTCTACACTATCACTGGA | 58.877 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
771 | 829 | 7.285629 | TCCTAACATTCTACACTATCACTGGAG | 59.714 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
772 | 830 | 6.859112 | AACATTCTACACTATCACTGGAGT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
773 | 831 | 6.859112 | ACATTCTACACTATCACTGGAGTT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
774 | 832 | 6.634805 | ACATTCTACACTATCACTGGAGTTG | 58.365 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
775 | 833 | 6.437477 | ACATTCTACACTATCACTGGAGTTGA | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
776 | 834 | 6.911250 | TTCTACACTATCACTGGAGTTGAA | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
777 | 835 | 6.516739 | TCTACACTATCACTGGAGTTGAAG | 57.483 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
778 | 836 | 4.543590 | ACACTATCACTGGAGTTGAAGG | 57.456 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
779 | 837 | 4.160329 | ACACTATCACTGGAGTTGAAGGA | 58.840 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
780 | 838 | 4.780021 | ACACTATCACTGGAGTTGAAGGAT | 59.220 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
781 | 839 | 5.958380 | ACACTATCACTGGAGTTGAAGGATA | 59.042 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
782 | 840 | 6.613271 | ACACTATCACTGGAGTTGAAGGATAT | 59.387 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
783 | 841 | 7.126421 | ACACTATCACTGGAGTTGAAGGATATT | 59.874 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
784 | 842 | 7.989741 | CACTATCACTGGAGTTGAAGGATATTT | 59.010 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
785 | 843 | 8.207545 | ACTATCACTGGAGTTGAAGGATATTTC | 58.792 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
786 | 844 | 6.627087 | TCACTGGAGTTGAAGGATATTTCT | 57.373 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
787 | 845 | 7.020827 | TCACTGGAGTTGAAGGATATTTCTT | 57.979 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
788 | 846 | 7.461749 | TCACTGGAGTTGAAGGATATTTCTTT | 58.538 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
789 | 847 | 8.602424 | TCACTGGAGTTGAAGGATATTTCTTTA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
790 | 848 | 9.401058 | CACTGGAGTTGAAGGATATTTCTTTAT | 57.599 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
791 | 849 | 9.981460 | ACTGGAGTTGAAGGATATTTCTTTATT | 57.019 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
800 | 858 | 9.931210 | GAAGGATATTTCTTTATTTACACGTGG | 57.069 | 33.333 | 21.57 | 1.66 | 0.00 | 4.94 |
801 | 859 | 8.446599 | AGGATATTTCTTTATTTACACGTGGG | 57.553 | 34.615 | 21.57 | 0.00 | 0.00 | 4.61 |
818 | 876 | 4.261801 | CGTGGGTGATTTAGGAAATCTGT | 58.738 | 43.478 | 11.97 | 0.00 | 45.85 | 3.41 |
819 | 877 | 4.700213 | CGTGGGTGATTTAGGAAATCTGTT | 59.300 | 41.667 | 11.97 | 0.00 | 45.85 | 3.16 |
821 | 879 | 6.542370 | CGTGGGTGATTTAGGAAATCTGTTAT | 59.458 | 38.462 | 11.97 | 0.00 | 45.85 | 1.89 |
882 | 940 | 1.814394 | GCCTGATTGCAAGTCACATCA | 59.186 | 47.619 | 4.94 | 1.36 | 0.00 | 3.07 |
906 | 964 | 3.073678 | TCACATCCAATGACTTTCCGTG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
915 | 973 | 5.401550 | CAATGACTTTCCGTGCATTATGTT | 58.598 | 37.500 | 0.00 | 0.00 | 30.45 | 2.71 |
924 | 982 | 2.284798 | CGTGCATTATGTTACGTCACGG | 60.285 | 50.000 | 0.35 | 0.00 | 41.14 | 4.94 |
925 | 983 | 1.661617 | TGCATTATGTTACGTCACGGC | 59.338 | 47.619 | 0.35 | 0.00 | 0.00 | 5.68 |
930 | 988 | 0.179119 | ATGTTACGTCACGGCTAGCC | 60.179 | 55.000 | 24.75 | 24.75 | 0.00 | 3.93 |
940 | 998 | 2.829458 | GGCTAGCCGTCGGAGAGT | 60.829 | 66.667 | 20.16 | 0.00 | 36.95 | 3.24 |
941 | 999 | 1.525535 | GGCTAGCCGTCGGAGAGTA | 60.526 | 63.158 | 20.16 | 0.00 | 36.95 | 2.59 |
1008 | 1081 | 3.084039 | CCTAGCATTCAACACACCATGT | 58.916 | 45.455 | 0.00 | 0.00 | 46.42 | 3.21 |
1022 | 1095 | 1.446099 | CATGTCGTCCCACGTCCAG | 60.446 | 63.158 | 0.00 | 0.00 | 43.14 | 3.86 |
1163 | 1242 | 2.070039 | CGCCATCCACCTTAGGGGA | 61.070 | 63.158 | 0.04 | 6.51 | 38.76 | 4.81 |
1194 | 1273 | 1.372087 | CTTGTCTGATCTTGCCGCCC | 61.372 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1233 | 1312 | 0.903454 | GAAGTTCTCCCACCTCCGGA | 60.903 | 60.000 | 2.93 | 2.93 | 0.00 | 5.14 |
1334 | 1416 | 1.545706 | GGGTCTCTCGCCTCCTTGTT | 61.546 | 60.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1337 | 1419 | 0.832135 | TCTCTCGCCTCCTTGTTGGT | 60.832 | 55.000 | 0.00 | 0.00 | 37.07 | 3.67 |
1343 | 1425 | 1.151450 | CCTCCTTGTTGGTGCTGGT | 59.849 | 57.895 | 0.00 | 0.00 | 37.07 | 4.00 |
1376 | 1458 | 3.680786 | CGCCGTGACCTGTCTCCA | 61.681 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1382 | 1467 | 1.270839 | CGTGACCTGTCTCCAATGGTT | 60.271 | 52.381 | 0.00 | 0.00 | 32.30 | 3.67 |
1410 | 1495 | 4.444838 | TCAACCCGGTCGCCATCG | 62.445 | 66.667 | 0.00 | 0.00 | 0.00 | 3.84 |
1451 | 1536 | 1.259770 | GAGTGGTTCACCGACGAAAAC | 59.740 | 52.381 | 0.00 | 0.00 | 39.43 | 2.43 |
1464 | 1549 | 2.672996 | AAAACAGCGCCGCCTCAT | 60.673 | 55.556 | 4.98 | 0.00 | 0.00 | 2.90 |
1479 | 1564 | 2.556257 | CCTCATCGTCTCTCTTCGAGA | 58.444 | 52.381 | 0.00 | 0.00 | 46.32 | 4.04 |
1490 | 1575 | 1.522355 | CTTCGAGATGGCGCATGGT | 60.522 | 57.895 | 10.83 | 0.00 | 0.00 | 3.55 |
1619 | 1704 | 1.735376 | GCAGCGTCTTCGGATCCCTA | 61.735 | 60.000 | 6.06 | 0.00 | 37.56 | 3.53 |
1820 | 1905 | 4.625028 | ACACCGTTCTACTCAAGGTAAAC | 58.375 | 43.478 | 0.00 | 0.00 | 33.30 | 2.01 |
1829 | 1954 | 7.549147 | TCTACTCAAGGTAAACATACAACCT | 57.451 | 36.000 | 0.00 | 0.00 | 45.62 | 3.50 |
1856 | 1986 | 8.840321 | GCATAGTCCATTTCACTATAACAACAT | 58.160 | 33.333 | 0.00 | 0.00 | 35.28 | 2.71 |
1955 | 2085 | 3.033184 | CGCCAGTGCAAGAAAGCA | 58.967 | 55.556 | 0.00 | 0.00 | 43.35 | 3.91 |
2013 | 2143 | 2.248248 | TGGATATGGTGGTCGGATCTC | 58.752 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
2014 | 2144 | 2.248248 | GGATATGGTGGTCGGATCTCA | 58.752 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
2020 | 2150 | 1.306141 | TGGTCGGATCTCAAGGGCT | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
2042 | 2172 | 0.110486 | AGCAGGAAACCGTGTCCAAT | 59.890 | 50.000 | 10.55 | 0.00 | 37.65 | 3.16 |
2072 | 2202 | 5.642063 | GGAGGTTTTGTTCGATGTCTTCATA | 59.358 | 40.000 | 0.00 | 0.00 | 34.06 | 2.15 |
2076 | 2206 | 6.251376 | GGTTTTGTTCGATGTCTTCATAATGC | 59.749 | 38.462 | 0.00 | 0.00 | 34.06 | 3.56 |
2078 | 2208 | 6.682423 | TTGTTCGATGTCTTCATAATGCAT | 57.318 | 33.333 | 0.00 | 0.00 | 34.06 | 3.96 |
2159 | 2289 | 3.119245 | TCAGCGACTACAAGATTACACCC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
2307 | 2442 | 4.938226 | AGTAAAATGAGTGCTAGCTTGACC | 59.062 | 41.667 | 17.23 | 1.52 | 0.00 | 4.02 |
2392 | 2530 | 7.095271 | CGTTGCAAAATCACCATCCTTTTAAAT | 60.095 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2412 | 2551 | 2.223745 | TGATAGACGCGTATGCCACTA | 58.776 | 47.619 | 18.06 | 11.08 | 38.08 | 2.74 |
2416 | 2555 | 1.136305 | AGACGCGTATGCCACTAACAT | 59.864 | 47.619 | 13.97 | 0.00 | 38.08 | 2.71 |
2446 | 2586 | 5.883328 | TGTCGATATTCATGCGTAACTTC | 57.117 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
2465 | 2610 | 7.526142 | AACTTCCTTTCTTAGTCCCAAAATC | 57.474 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2471 | 2616 | 8.933653 | TCCTTTCTTAGTCCCAAAATCAAAATT | 58.066 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2635 | 2818 | 8.699749 | GTTGTCAAATAAAAAGCACATACTTCC | 58.300 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
2673 | 2857 | 5.552178 | AGAGTACTTTTCTGCGAGGAAAAT | 58.448 | 37.500 | 13.51 | 8.66 | 42.07 | 1.82 |
2680 | 2864 | 5.560966 | TTTCTGCGAGGAAAATAATGGAC | 57.439 | 39.130 | 0.00 | 0.00 | 33.04 | 4.02 |
2689 | 2875 | 6.370442 | CGAGGAAAATAATGGACACAACACTA | 59.630 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
2690 | 2876 | 7.065803 | CGAGGAAAATAATGGACACAACACTAT | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2932 | 5310 | 8.828644 | TCAATTTACAAAGAAGTTAGCACGTAA | 58.171 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2943 | 5321 | 5.548406 | AGTTAGCACGTAAGAAAAGTGGAT | 58.452 | 37.500 | 0.00 | 0.00 | 37.96 | 3.41 |
3083 | 7675 | 9.442047 | ACTGTAGATCACAAAAATAGAGAAAGG | 57.558 | 33.333 | 0.00 | 0.00 | 36.48 | 3.11 |
3187 | 7785 | 6.023435 | CACGATCAAATCACTAACCACATTG | 58.977 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3188 | 7786 | 5.123820 | ACGATCAAATCACTAACCACATTGG | 59.876 | 40.000 | 0.00 | 0.00 | 45.02 | 3.16 |
3189 | 7787 | 4.782019 | TCAAATCACTAACCACATTGGC | 57.218 | 40.909 | 0.00 | 0.00 | 42.67 | 4.52 |
3190 | 7788 | 3.190327 | TCAAATCACTAACCACATTGGCG | 59.810 | 43.478 | 0.00 | 0.00 | 42.67 | 5.69 |
3191 | 7789 | 2.779755 | ATCACTAACCACATTGGCGA | 57.220 | 45.000 | 0.00 | 0.00 | 42.67 | 5.54 |
3192 | 7790 | 2.093306 | TCACTAACCACATTGGCGAG | 57.907 | 50.000 | 0.00 | 0.00 | 42.67 | 5.03 |
3193 | 7791 | 1.086696 | CACTAACCACATTGGCGAGG | 58.913 | 55.000 | 0.00 | 0.00 | 42.67 | 4.63 |
3194 | 7792 | 0.035439 | ACTAACCACATTGGCGAGGG | 60.035 | 55.000 | 0.00 | 0.00 | 42.67 | 4.30 |
3195 | 7793 | 1.376609 | CTAACCACATTGGCGAGGGC | 61.377 | 60.000 | 0.00 | 0.00 | 42.67 | 5.19 |
3206 | 7804 | 2.978010 | CGAGGGCGGCAACAGTTT | 60.978 | 61.111 | 12.47 | 0.00 | 0.00 | 2.66 |
3207 | 7805 | 2.551912 | CGAGGGCGGCAACAGTTTT | 61.552 | 57.895 | 12.47 | 0.00 | 0.00 | 2.43 |
3208 | 7806 | 1.739667 | GAGGGCGGCAACAGTTTTT | 59.260 | 52.632 | 12.47 | 0.00 | 0.00 | 1.94 |
3246 | 7844 | 8.539117 | AAAAAGGAATATATGGAGAAACCTGG | 57.461 | 34.615 | 0.00 | 0.00 | 39.86 | 4.45 |
3247 | 7845 | 5.850046 | AGGAATATATGGAGAAACCTGGG | 57.150 | 43.478 | 0.00 | 0.00 | 39.86 | 4.45 |
3248 | 7846 | 5.486332 | AGGAATATATGGAGAAACCTGGGA | 58.514 | 41.667 | 0.00 | 0.00 | 39.86 | 4.37 |
3249 | 7847 | 5.310857 | AGGAATATATGGAGAAACCTGGGAC | 59.689 | 44.000 | 0.00 | 0.00 | 39.86 | 4.46 |
3250 | 7848 | 4.891992 | ATATATGGAGAAACCTGGGACG | 57.108 | 45.455 | 0.00 | 0.00 | 39.86 | 4.79 |
3251 | 7849 | 2.241281 | TATGGAGAAACCTGGGACGA | 57.759 | 50.000 | 0.00 | 0.00 | 39.86 | 4.20 |
3252 | 7850 | 1.584724 | ATGGAGAAACCTGGGACGAT | 58.415 | 50.000 | 0.00 | 0.00 | 39.86 | 3.73 |
3253 | 7851 | 1.358152 | TGGAGAAACCTGGGACGATT | 58.642 | 50.000 | 0.00 | 0.00 | 39.86 | 3.34 |
3254 | 7852 | 1.702957 | TGGAGAAACCTGGGACGATTT | 59.297 | 47.619 | 0.00 | 0.00 | 39.86 | 2.17 |
3255 | 7853 | 2.107552 | TGGAGAAACCTGGGACGATTTT | 59.892 | 45.455 | 0.00 | 0.00 | 39.86 | 1.82 |
3256 | 7854 | 2.488153 | GGAGAAACCTGGGACGATTTTG | 59.512 | 50.000 | 0.00 | 0.00 | 35.41 | 2.44 |
3257 | 7855 | 3.408634 | GAGAAACCTGGGACGATTTTGA | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
3258 | 7856 | 4.010349 | GAGAAACCTGGGACGATTTTGAT | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3259 | 7857 | 4.010349 | AGAAACCTGGGACGATTTTGATC | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
3260 | 7858 | 3.433306 | AACCTGGGACGATTTTGATCA | 57.567 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
3261 | 7859 | 3.433306 | ACCTGGGACGATTTTGATCAA | 57.567 | 42.857 | 3.38 | 3.38 | 0.00 | 2.57 |
3262 | 7860 | 3.081804 | ACCTGGGACGATTTTGATCAAC | 58.918 | 45.455 | 7.89 | 0.00 | 0.00 | 3.18 |
3263 | 7861 | 3.081061 | CCTGGGACGATTTTGATCAACA | 58.919 | 45.455 | 7.89 | 1.31 | 0.00 | 3.33 |
3264 | 7862 | 3.505680 | CCTGGGACGATTTTGATCAACAA | 59.494 | 43.478 | 7.89 | 6.58 | 36.65 | 2.83 |
3265 | 7863 | 4.379813 | CCTGGGACGATTTTGATCAACAAG | 60.380 | 45.833 | 7.89 | 3.43 | 39.77 | 3.16 |
3266 | 7864 | 3.505680 | TGGGACGATTTTGATCAACAAGG | 59.494 | 43.478 | 7.89 | 0.83 | 39.77 | 3.61 |
3267 | 7865 | 3.506067 | GGGACGATTTTGATCAACAAGGT | 59.494 | 43.478 | 7.89 | 4.19 | 39.77 | 3.50 |
3268 | 7866 | 4.698304 | GGGACGATTTTGATCAACAAGGTA | 59.302 | 41.667 | 7.89 | 0.00 | 39.77 | 3.08 |
3269 | 7867 | 5.182380 | GGGACGATTTTGATCAACAAGGTAA | 59.818 | 40.000 | 7.89 | 0.00 | 39.77 | 2.85 |
3270 | 7868 | 6.294286 | GGGACGATTTTGATCAACAAGGTAAA | 60.294 | 38.462 | 7.89 | 0.00 | 39.77 | 2.01 |
3271 | 7869 | 7.142680 | GGACGATTTTGATCAACAAGGTAAAA | 58.857 | 34.615 | 7.89 | 0.00 | 39.77 | 1.52 |
3272 | 7870 | 7.812669 | GGACGATTTTGATCAACAAGGTAAAAT | 59.187 | 33.333 | 7.89 | 2.50 | 39.77 | 1.82 |
3273 | 7871 | 9.834628 | GACGATTTTGATCAACAAGGTAAAATA | 57.165 | 29.630 | 7.89 | 0.00 | 39.77 | 1.40 |
3281 | 7879 | 8.956426 | TGATCAACAAGGTAAAATAAGATGACC | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
3282 | 7880 | 8.877864 | ATCAACAAGGTAAAATAAGATGACCA | 57.122 | 30.769 | 0.00 | 0.00 | 32.28 | 4.02 |
3283 | 7881 | 8.877864 | TCAACAAGGTAAAATAAGATGACCAT | 57.122 | 30.769 | 0.00 | 0.00 | 32.28 | 3.55 |
3284 | 7882 | 9.967451 | TCAACAAGGTAAAATAAGATGACCATA | 57.033 | 29.630 | 0.00 | 0.00 | 32.28 | 2.74 |
3286 | 7884 | 9.975218 | AACAAGGTAAAATAAGATGACCATACT | 57.025 | 29.630 | 0.00 | 0.00 | 32.28 | 2.12 |
3287 | 7885 | 9.614792 | ACAAGGTAAAATAAGATGACCATACTC | 57.385 | 33.333 | 0.00 | 0.00 | 32.28 | 2.59 |
3288 | 7886 | 9.613428 | CAAGGTAAAATAAGATGACCATACTCA | 57.387 | 33.333 | 0.00 | 0.00 | 32.28 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
244 | 271 | 8.560903 | AGGGATTTTACCTCTTCATCTATTTGT | 58.439 | 33.333 | 0.00 | 0.00 | 31.01 | 2.83 |
302 | 343 | 9.575783 | GGATCTTTAGAAGAACTACTAGTTGTG | 57.424 | 37.037 | 10.78 | 0.10 | 38.80 | 3.33 |
303 | 344 | 8.751242 | GGGATCTTTAGAAGAACTACTAGTTGT | 58.249 | 37.037 | 6.17 | 1.41 | 38.80 | 3.32 |
335 | 377 | 7.446769 | TGGTTGCTACTTAGATCTTTTGTGTA | 58.553 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
420 | 475 | 2.825861 | CTTTCCACAAAAGCCTGCAT | 57.174 | 45.000 | 0.00 | 0.00 | 38.11 | 3.96 |
670 | 728 | 7.155328 | GTGTGTTACATGGATAAGCTAGCTAT | 58.845 | 38.462 | 19.70 | 11.72 | 0.00 | 2.97 |
673 | 731 | 5.116180 | TGTGTGTTACATGGATAAGCTAGC | 58.884 | 41.667 | 6.62 | 6.62 | 33.42 | 3.42 |
674 | 732 | 5.235186 | GCTGTGTGTTACATGGATAAGCTAG | 59.765 | 44.000 | 0.00 | 0.00 | 38.92 | 3.42 |
675 | 733 | 5.104941 | AGCTGTGTGTTACATGGATAAGCTA | 60.105 | 40.000 | 0.00 | 0.00 | 38.92 | 3.32 |
676 | 734 | 3.941483 | GCTGTGTGTTACATGGATAAGCT | 59.059 | 43.478 | 0.00 | 0.00 | 38.92 | 3.74 |
677 | 735 | 3.941483 | AGCTGTGTGTTACATGGATAAGC | 59.059 | 43.478 | 0.00 | 0.00 | 38.92 | 3.09 |
678 | 736 | 5.235186 | GCTAGCTGTGTGTTACATGGATAAG | 59.765 | 44.000 | 7.70 | 0.00 | 38.92 | 1.73 |
679 | 737 | 5.104941 | AGCTAGCTGTGTGTTACATGGATAA | 60.105 | 40.000 | 18.57 | 0.00 | 38.92 | 1.75 |
680 | 738 | 4.405680 | AGCTAGCTGTGTGTTACATGGATA | 59.594 | 41.667 | 18.57 | 0.00 | 38.92 | 2.59 |
681 | 739 | 3.198635 | AGCTAGCTGTGTGTTACATGGAT | 59.801 | 43.478 | 18.57 | 0.00 | 38.92 | 3.41 |
682 | 740 | 2.567169 | AGCTAGCTGTGTGTTACATGGA | 59.433 | 45.455 | 18.57 | 0.00 | 38.92 | 3.41 |
683 | 741 | 2.977914 | AGCTAGCTGTGTGTTACATGG | 58.022 | 47.619 | 18.57 | 0.00 | 38.92 | 3.66 |
684 | 742 | 5.235186 | GGATAAGCTAGCTGTGTGTTACATG | 59.765 | 44.000 | 20.16 | 0.00 | 38.92 | 3.21 |
685 | 743 | 5.104941 | TGGATAAGCTAGCTGTGTGTTACAT | 60.105 | 40.000 | 20.16 | 0.11 | 38.92 | 2.29 |
686 | 744 | 4.221924 | TGGATAAGCTAGCTGTGTGTTACA | 59.778 | 41.667 | 20.16 | 7.03 | 37.78 | 2.41 |
687 | 745 | 4.567159 | GTGGATAAGCTAGCTGTGTGTTAC | 59.433 | 45.833 | 20.16 | 8.36 | 0.00 | 2.50 |
688 | 746 | 4.221924 | TGTGGATAAGCTAGCTGTGTGTTA | 59.778 | 41.667 | 20.16 | 5.97 | 0.00 | 2.41 |
689 | 747 | 3.007940 | TGTGGATAAGCTAGCTGTGTGTT | 59.992 | 43.478 | 20.16 | 3.46 | 0.00 | 3.32 |
690 | 748 | 2.567169 | TGTGGATAAGCTAGCTGTGTGT | 59.433 | 45.455 | 20.16 | 4.30 | 0.00 | 3.72 |
691 | 749 | 2.932614 | GTGTGGATAAGCTAGCTGTGTG | 59.067 | 50.000 | 20.16 | 0.00 | 0.00 | 3.82 |
692 | 750 | 2.567169 | TGTGTGGATAAGCTAGCTGTGT | 59.433 | 45.455 | 20.16 | 7.28 | 0.00 | 3.72 |
693 | 751 | 3.251479 | TGTGTGGATAAGCTAGCTGTG | 57.749 | 47.619 | 20.16 | 0.00 | 0.00 | 3.66 |
694 | 752 | 3.600388 | GTTGTGTGGATAAGCTAGCTGT | 58.400 | 45.455 | 20.16 | 10.54 | 0.00 | 4.40 |
695 | 753 | 2.939103 | GGTTGTGTGGATAAGCTAGCTG | 59.061 | 50.000 | 20.16 | 0.00 | 0.00 | 4.24 |
696 | 754 | 2.571653 | TGGTTGTGTGGATAAGCTAGCT | 59.428 | 45.455 | 12.68 | 12.68 | 0.00 | 3.32 |
697 | 755 | 2.985896 | TGGTTGTGTGGATAAGCTAGC | 58.014 | 47.619 | 6.62 | 6.62 | 0.00 | 3.42 |
698 | 756 | 4.333649 | CACATGGTTGTGTGGATAAGCTAG | 59.666 | 45.833 | 0.00 | 0.00 | 46.68 | 3.42 |
699 | 757 | 4.260985 | CACATGGTTGTGTGGATAAGCTA | 58.739 | 43.478 | 0.00 | 0.00 | 46.68 | 3.32 |
700 | 758 | 3.084039 | CACATGGTTGTGTGGATAAGCT | 58.916 | 45.455 | 0.00 | 0.00 | 46.68 | 3.74 |
701 | 759 | 3.492421 | CACATGGTTGTGTGGATAAGC | 57.508 | 47.619 | 0.00 | 0.00 | 46.68 | 3.09 |
711 | 769 | 1.286570 | CGTGCATGCACATGGTTGT | 59.713 | 52.632 | 40.95 | 0.00 | 46.47 | 3.32 |
712 | 770 | 1.444724 | CCGTGCATGCACATGGTTG | 60.445 | 57.895 | 40.95 | 26.92 | 46.47 | 3.77 |
713 | 771 | 2.964174 | CCGTGCATGCACATGGTT | 59.036 | 55.556 | 40.95 | 0.00 | 46.47 | 3.67 |
716 | 774 | 0.455464 | CTTGACCGTGCATGCACATG | 60.455 | 55.000 | 40.95 | 33.64 | 46.47 | 3.21 |
717 | 775 | 0.890542 | ACTTGACCGTGCATGCACAT | 60.891 | 50.000 | 40.95 | 31.49 | 46.47 | 3.21 |
718 | 776 | 1.506309 | GACTTGACCGTGCATGCACA | 61.506 | 55.000 | 40.95 | 24.84 | 46.47 | 4.57 |
719 | 777 | 1.207593 | GACTTGACCGTGCATGCAC | 59.792 | 57.895 | 35.76 | 35.76 | 43.01 | 4.57 |
720 | 778 | 0.534877 | AAGACTTGACCGTGCATGCA | 60.535 | 50.000 | 18.46 | 18.46 | 0.00 | 3.96 |
721 | 779 | 0.110056 | CAAGACTTGACCGTGCATGC | 60.110 | 55.000 | 11.82 | 11.82 | 0.00 | 4.06 |
722 | 780 | 1.511850 | TCAAGACTTGACCGTGCATG | 58.488 | 50.000 | 13.99 | 0.00 | 34.08 | 4.06 |
723 | 781 | 2.479566 | ATCAAGACTTGACCGTGCAT | 57.520 | 45.000 | 19.96 | 0.00 | 43.48 | 3.96 |
724 | 782 | 2.254546 | AATCAAGACTTGACCGTGCA | 57.745 | 45.000 | 19.96 | 0.00 | 43.48 | 4.57 |
725 | 783 | 3.309954 | GGATAATCAAGACTTGACCGTGC | 59.690 | 47.826 | 19.96 | 10.01 | 43.48 | 5.34 |
726 | 784 | 4.759782 | AGGATAATCAAGACTTGACCGTG | 58.240 | 43.478 | 19.96 | 0.00 | 43.48 | 4.94 |
727 | 785 | 6.070995 | TGTTAGGATAATCAAGACTTGACCGT | 60.071 | 38.462 | 19.96 | 10.85 | 43.48 | 4.83 |
728 | 786 | 6.338146 | TGTTAGGATAATCAAGACTTGACCG | 58.662 | 40.000 | 19.96 | 0.00 | 43.48 | 4.79 |
729 | 787 | 8.738645 | AATGTTAGGATAATCAAGACTTGACC | 57.261 | 34.615 | 19.96 | 15.74 | 43.48 | 4.02 |
730 | 788 | 9.606631 | AGAATGTTAGGATAATCAAGACTTGAC | 57.393 | 33.333 | 19.96 | 7.44 | 43.48 | 3.18 |
743 | 801 | 9.078990 | CCAGTGATAGTGTAGAATGTTAGGATA | 57.921 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
744 | 802 | 7.785028 | TCCAGTGATAGTGTAGAATGTTAGGAT | 59.215 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
745 | 803 | 7.123383 | TCCAGTGATAGTGTAGAATGTTAGGA | 58.877 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
746 | 804 | 7.068839 | ACTCCAGTGATAGTGTAGAATGTTAGG | 59.931 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
747 | 805 | 8.001881 | ACTCCAGTGATAGTGTAGAATGTTAG | 57.998 | 38.462 | 0.00 | 0.00 | 0.00 | 2.34 |
748 | 806 | 7.956328 | ACTCCAGTGATAGTGTAGAATGTTA | 57.044 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
749 | 807 | 6.859112 | ACTCCAGTGATAGTGTAGAATGTT | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
750 | 808 | 6.437477 | TCAACTCCAGTGATAGTGTAGAATGT | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
751 | 809 | 6.867550 | TCAACTCCAGTGATAGTGTAGAATG | 58.132 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
752 | 810 | 7.364232 | CCTTCAACTCCAGTGATAGTGTAGAAT | 60.364 | 40.741 | 0.00 | 0.00 | 0.00 | 2.40 |
753 | 811 | 6.071334 | CCTTCAACTCCAGTGATAGTGTAGAA | 60.071 | 42.308 | 0.00 | 1.08 | 0.00 | 2.10 |
754 | 812 | 5.419155 | CCTTCAACTCCAGTGATAGTGTAGA | 59.581 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
755 | 813 | 5.419155 | TCCTTCAACTCCAGTGATAGTGTAG | 59.581 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
756 | 814 | 5.330233 | TCCTTCAACTCCAGTGATAGTGTA | 58.670 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
757 | 815 | 4.160329 | TCCTTCAACTCCAGTGATAGTGT | 58.840 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
758 | 816 | 4.808414 | TCCTTCAACTCCAGTGATAGTG | 57.192 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
759 | 817 | 7.682787 | AATATCCTTCAACTCCAGTGATAGT | 57.317 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
760 | 818 | 8.428063 | AGAAATATCCTTCAACTCCAGTGATAG | 58.572 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
761 | 819 | 8.324191 | AGAAATATCCTTCAACTCCAGTGATA | 57.676 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
762 | 820 | 7.205515 | AGAAATATCCTTCAACTCCAGTGAT | 57.794 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
763 | 821 | 6.627087 | AGAAATATCCTTCAACTCCAGTGA | 57.373 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
764 | 822 | 7.693969 | AAAGAAATATCCTTCAACTCCAGTG | 57.306 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
765 | 823 | 9.981460 | AATAAAGAAATATCCTTCAACTCCAGT | 57.019 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
774 | 832 | 9.931210 | CCACGTGTAAATAAAGAAATATCCTTC | 57.069 | 33.333 | 15.65 | 0.00 | 0.00 | 3.46 |
775 | 833 | 8.899771 | CCCACGTGTAAATAAAGAAATATCCTT | 58.100 | 33.333 | 15.65 | 0.00 | 0.00 | 3.36 |
776 | 834 | 8.050930 | ACCCACGTGTAAATAAAGAAATATCCT | 58.949 | 33.333 | 15.65 | 0.00 | 0.00 | 3.24 |
777 | 835 | 8.126700 | CACCCACGTGTAAATAAAGAAATATCC | 58.873 | 37.037 | 15.65 | 0.00 | 35.10 | 2.59 |
778 | 836 | 8.885722 | TCACCCACGTGTAAATAAAGAAATATC | 58.114 | 33.333 | 15.65 | 0.00 | 41.09 | 1.63 |
779 | 837 | 8.795842 | TCACCCACGTGTAAATAAAGAAATAT | 57.204 | 30.769 | 15.65 | 0.00 | 41.09 | 1.28 |
780 | 838 | 8.795842 | ATCACCCACGTGTAAATAAAGAAATA | 57.204 | 30.769 | 15.65 | 0.00 | 41.09 | 1.40 |
781 | 839 | 7.696992 | ATCACCCACGTGTAAATAAAGAAAT | 57.303 | 32.000 | 15.65 | 0.00 | 41.09 | 2.17 |
782 | 840 | 7.513371 | AATCACCCACGTGTAAATAAAGAAA | 57.487 | 32.000 | 15.65 | 0.00 | 41.09 | 2.52 |
783 | 841 | 7.513371 | AAATCACCCACGTGTAAATAAAGAA | 57.487 | 32.000 | 15.65 | 0.00 | 41.09 | 2.52 |
784 | 842 | 7.334921 | CCTAAATCACCCACGTGTAAATAAAGA | 59.665 | 37.037 | 15.65 | 1.32 | 41.09 | 2.52 |
785 | 843 | 7.334921 | TCCTAAATCACCCACGTGTAAATAAAG | 59.665 | 37.037 | 15.65 | 2.99 | 41.09 | 1.85 |
786 | 844 | 7.166851 | TCCTAAATCACCCACGTGTAAATAAA | 58.833 | 34.615 | 15.65 | 0.00 | 41.09 | 1.40 |
787 | 845 | 6.709281 | TCCTAAATCACCCACGTGTAAATAA | 58.291 | 36.000 | 15.65 | 0.00 | 41.09 | 1.40 |
788 | 846 | 6.297080 | TCCTAAATCACCCACGTGTAAATA | 57.703 | 37.500 | 15.65 | 0.00 | 41.09 | 1.40 |
789 | 847 | 5.168647 | TCCTAAATCACCCACGTGTAAAT | 57.831 | 39.130 | 15.65 | 0.00 | 41.09 | 1.40 |
790 | 848 | 4.620589 | TCCTAAATCACCCACGTGTAAA | 57.379 | 40.909 | 15.65 | 0.00 | 41.09 | 2.01 |
791 | 849 | 4.620589 | TTCCTAAATCACCCACGTGTAA | 57.379 | 40.909 | 15.65 | 0.00 | 41.09 | 2.41 |
792 | 850 | 4.620589 | TTTCCTAAATCACCCACGTGTA | 57.379 | 40.909 | 15.65 | 0.00 | 41.09 | 2.90 |
793 | 851 | 3.495434 | TTTCCTAAATCACCCACGTGT | 57.505 | 42.857 | 15.65 | 0.00 | 41.09 | 4.49 |
794 | 852 | 4.616181 | GATTTCCTAAATCACCCACGTG | 57.384 | 45.455 | 9.08 | 9.08 | 45.18 | 4.49 |
810 | 868 | 9.612620 | CTCCCGCAATTTAATATAACAGATTTC | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
832 | 890 | 2.553172 | GCAAGATGATGATTGCTCTCCC | 59.447 | 50.000 | 2.80 | 0.00 | 46.49 | 4.30 |
882 | 940 | 5.528690 | CACGGAAAGTCATTGGATGTGATAT | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
906 | 964 | 1.931172 | AGCCGTGACGTAACATAATGC | 59.069 | 47.619 | 3.64 | 0.00 | 0.00 | 3.56 |
924 | 982 | 0.029167 | GTTACTCTCCGACGGCTAGC | 59.971 | 60.000 | 9.66 | 6.04 | 0.00 | 3.42 |
925 | 983 | 1.331138 | CTGTTACTCTCCGACGGCTAG | 59.669 | 57.143 | 9.66 | 11.25 | 0.00 | 3.42 |
930 | 988 | 0.803117 | TGAGCTGTTACTCTCCGACG | 59.197 | 55.000 | 0.00 | 0.00 | 37.58 | 5.12 |
940 | 998 | 1.414919 | AGGTGAACGGTTGAGCTGTTA | 59.585 | 47.619 | 11.16 | 0.00 | 45.99 | 2.41 |
1008 | 1081 | 2.203523 | TTCCTGGACGTGGGACGA | 60.204 | 61.111 | 2.62 | 0.00 | 46.05 | 4.20 |
1022 | 1095 | 0.105593 | TCATGGCGAGCTCATCTTCC | 59.894 | 55.000 | 15.40 | 6.76 | 0.00 | 3.46 |
1289 | 1368 | 1.006571 | CTTGTACACGGTGTCGCCT | 60.007 | 57.895 | 18.43 | 0.00 | 40.63 | 5.52 |
1334 | 1416 | 4.007644 | CTCTCGCCACCAGCACCA | 62.008 | 66.667 | 0.00 | 0.00 | 44.04 | 4.17 |
1337 | 1419 | 4.074526 | GAGCTCTCGCCACCAGCA | 62.075 | 66.667 | 6.43 | 0.00 | 44.04 | 4.41 |
1376 | 1458 | 1.107114 | TGACAAACACGCCAACCATT | 58.893 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1382 | 1467 | 3.515611 | GGGTTGACAAACACGCCA | 58.484 | 55.556 | 5.42 | 0.00 | 38.10 | 5.69 |
1479 | 1564 | 1.643868 | CGTGTACAACCATGCGCCAT | 61.644 | 55.000 | 4.18 | 0.00 | 0.00 | 4.40 |
1490 | 1575 | 1.634960 | TCATCTCCCACCGTGTACAA | 58.365 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1529 | 1614 | 2.175811 | GCATTGAACACGCGACCC | 59.824 | 61.111 | 15.93 | 0.00 | 0.00 | 4.46 |
1532 | 1617 | 3.418913 | CCGGCATTGAACACGCGA | 61.419 | 61.111 | 15.93 | 0.00 | 0.00 | 5.87 |
1591 | 1676 | 0.948141 | GAAGACGCTGCTGCACTCTT | 60.948 | 55.000 | 19.43 | 19.43 | 38.08 | 2.85 |
1619 | 1704 | 1.986757 | ATCGACCAGTGAGCTGCCT | 60.987 | 57.895 | 0.00 | 0.00 | 41.26 | 4.75 |
1673 | 1758 | 1.907807 | GTGTGGGAATGCCTTGGCA | 60.908 | 57.895 | 17.19 | 17.19 | 0.00 | 4.92 |
1743 | 1828 | 4.036380 | GGGGACGAAGGTTAAATTAGCATG | 59.964 | 45.833 | 0.00 | 0.00 | 0.00 | 4.06 |
1820 | 1905 | 5.589855 | TGAAATGGACTATGCAGGTTGTATG | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1829 | 1954 | 7.826744 | TGTTGTTATAGTGAAATGGACTATGCA | 59.173 | 33.333 | 0.00 | 0.00 | 37.25 | 3.96 |
1973 | 2103 | 3.395607 | CCATGATTATCACCTTCCCTCCA | 59.604 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
2013 | 2143 | 1.904865 | TTTCCTGCTGCAGCCCTTG | 60.905 | 57.895 | 34.64 | 20.89 | 41.18 | 3.61 |
2014 | 2144 | 1.905354 | GTTTCCTGCTGCAGCCCTT | 60.905 | 57.895 | 34.64 | 0.00 | 41.18 | 3.95 |
2020 | 2150 | 1.891919 | GACACGGTTTCCTGCTGCA | 60.892 | 57.895 | 0.88 | 0.88 | 0.00 | 4.41 |
2042 | 2172 | 0.882927 | CGAACAAAACCTCCGCCTCA | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2072 | 2202 | 1.623311 | TGGATCCCGTCGATATGCATT | 59.377 | 47.619 | 9.90 | 0.00 | 0.00 | 3.56 |
2076 | 2206 | 0.456824 | CGCTGGATCCCGTCGATATG | 60.457 | 60.000 | 9.90 | 0.00 | 0.00 | 1.78 |
2078 | 2208 | 1.228033 | TCGCTGGATCCCGTCGATA | 60.228 | 57.895 | 9.90 | 0.00 | 0.00 | 2.92 |
2159 | 2289 | 1.011968 | TTGAGCGAATTCCCGTCACG | 61.012 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2280 | 2415 | 8.669243 | GTCAAGCTAGCACTCATTTTACTTAAT | 58.331 | 33.333 | 18.83 | 0.00 | 0.00 | 1.40 |
2307 | 2442 | 1.270826 | TGCGAGACAGAGGAAGAGTTG | 59.729 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2348 | 2484 | 4.597079 | CAACGTACTGTTTGACTGCAAAT | 58.403 | 39.130 | 0.00 | 0.00 | 45.01 | 2.32 |
2351 | 2487 | 1.329292 | GCAACGTACTGTTTGACTGCA | 59.671 | 47.619 | 0.00 | 0.00 | 39.29 | 4.41 |
2352 | 2488 | 1.329292 | TGCAACGTACTGTTTGACTGC | 59.671 | 47.619 | 0.00 | 0.00 | 39.29 | 4.40 |
2392 | 2530 | 1.029681 | AGTGGCATACGCGTCTATCA | 58.970 | 50.000 | 18.63 | 8.19 | 39.92 | 2.15 |
2399 | 2537 | 4.725556 | AAATATGTTAGTGGCATACGCG | 57.274 | 40.909 | 3.53 | 3.53 | 39.92 | 6.01 |
2416 | 2555 | 7.883229 | ACGCATGAATATCGACATGTAAATA | 57.117 | 32.000 | 13.38 | 0.00 | 43.67 | 1.40 |
2593 | 2773 | 3.194755 | TGACAACTATACAGTGCGGTGAT | 59.805 | 43.478 | 0.00 | 0.00 | 34.36 | 3.06 |
2598 | 2778 | 8.942669 | TTTTTATTTGACAACTATACAGTGCG | 57.057 | 30.769 | 0.00 | 0.00 | 34.36 | 5.34 |
2635 | 2818 | 7.611213 | AAAGTACTCTATCCATTTTGAACCG | 57.389 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2673 | 2857 | 9.325198 | GTGATATCAATAGTGTTGTGTCCATTA | 57.675 | 33.333 | 7.07 | 0.00 | 0.00 | 1.90 |
2680 | 2864 | 8.204160 | TCTAAGGGTGATATCAATAGTGTTGTG | 58.796 | 37.037 | 7.07 | 0.00 | 0.00 | 3.33 |
2932 | 5310 | 4.261801 | CGGGATTGTACATCCACTTTTCT | 58.738 | 43.478 | 19.53 | 0.00 | 39.93 | 2.52 |
2943 | 5321 | 2.125310 | CGCTGGCGGGATTGTACA | 60.125 | 61.111 | 7.12 | 0.00 | 35.56 | 2.90 |
3083 | 7675 | 7.115520 | CACCAATCATCTTGTCGTGATAGATAC | 59.884 | 40.741 | 0.00 | 0.00 | 34.14 | 2.24 |
3087 | 7679 | 5.351458 | TCACCAATCATCTTGTCGTGATAG | 58.649 | 41.667 | 0.00 | 0.00 | 34.14 | 2.08 |
3165 | 7763 | 5.572211 | CCAATGTGGTTAGTGATTTGATCG | 58.428 | 41.667 | 0.00 | 0.00 | 31.35 | 3.69 |
3189 | 7787 | 2.070654 | AAAAACTGTTGCCGCCCTCG | 62.071 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3190 | 7788 | 1.739667 | AAAAACTGTTGCCGCCCTC | 59.260 | 52.632 | 0.00 | 0.00 | 0.00 | 4.30 |
3191 | 7789 | 3.948702 | AAAAACTGTTGCCGCCCT | 58.051 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3221 | 7819 | 7.565029 | CCCAGGTTTCTCCATATATTCCTTTTT | 59.435 | 37.037 | 0.00 | 0.00 | 39.02 | 1.94 |
3222 | 7820 | 7.069344 | CCCAGGTTTCTCCATATATTCCTTTT | 58.931 | 38.462 | 0.00 | 0.00 | 39.02 | 2.27 |
3223 | 7821 | 6.392842 | TCCCAGGTTTCTCCATATATTCCTTT | 59.607 | 38.462 | 0.00 | 0.00 | 39.02 | 3.11 |
3224 | 7822 | 5.917087 | TCCCAGGTTTCTCCATATATTCCTT | 59.083 | 40.000 | 0.00 | 0.00 | 39.02 | 3.36 |
3225 | 7823 | 5.310857 | GTCCCAGGTTTCTCCATATATTCCT | 59.689 | 44.000 | 0.00 | 0.00 | 39.02 | 3.36 |
3226 | 7824 | 5.561679 | GTCCCAGGTTTCTCCATATATTCC | 58.438 | 45.833 | 0.00 | 0.00 | 39.02 | 3.01 |
3227 | 7825 | 5.011738 | TCGTCCCAGGTTTCTCCATATATTC | 59.988 | 44.000 | 0.00 | 0.00 | 39.02 | 1.75 |
3228 | 7826 | 4.905456 | TCGTCCCAGGTTTCTCCATATATT | 59.095 | 41.667 | 0.00 | 0.00 | 39.02 | 1.28 |
3229 | 7827 | 4.489737 | TCGTCCCAGGTTTCTCCATATAT | 58.510 | 43.478 | 0.00 | 0.00 | 39.02 | 0.86 |
3230 | 7828 | 3.918566 | TCGTCCCAGGTTTCTCCATATA | 58.081 | 45.455 | 0.00 | 0.00 | 39.02 | 0.86 |
3231 | 7829 | 2.759355 | TCGTCCCAGGTTTCTCCATAT | 58.241 | 47.619 | 0.00 | 0.00 | 39.02 | 1.78 |
3232 | 7830 | 2.241281 | TCGTCCCAGGTTTCTCCATA | 57.759 | 50.000 | 0.00 | 0.00 | 39.02 | 2.74 |
3233 | 7831 | 1.584724 | ATCGTCCCAGGTTTCTCCAT | 58.415 | 50.000 | 0.00 | 0.00 | 39.02 | 3.41 |
3234 | 7832 | 1.358152 | AATCGTCCCAGGTTTCTCCA | 58.642 | 50.000 | 0.00 | 0.00 | 39.02 | 3.86 |
3235 | 7833 | 2.488153 | CAAAATCGTCCCAGGTTTCTCC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3236 | 7834 | 3.408634 | TCAAAATCGTCCCAGGTTTCTC | 58.591 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
3237 | 7835 | 3.502123 | TCAAAATCGTCCCAGGTTTCT | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
3238 | 7836 | 3.756434 | TGATCAAAATCGTCCCAGGTTTC | 59.244 | 43.478 | 0.00 | 0.00 | 34.39 | 2.78 |
3239 | 7837 | 3.761897 | TGATCAAAATCGTCCCAGGTTT | 58.238 | 40.909 | 0.00 | 0.00 | 34.39 | 3.27 |
3240 | 7838 | 3.433306 | TGATCAAAATCGTCCCAGGTT | 57.567 | 42.857 | 0.00 | 0.00 | 34.39 | 3.50 |
3241 | 7839 | 3.081804 | GTTGATCAAAATCGTCCCAGGT | 58.918 | 45.455 | 10.35 | 0.00 | 34.39 | 4.00 |
3242 | 7840 | 3.081061 | TGTTGATCAAAATCGTCCCAGG | 58.919 | 45.455 | 10.35 | 0.00 | 34.39 | 4.45 |
3243 | 7841 | 4.379813 | CCTTGTTGATCAAAATCGTCCCAG | 60.380 | 45.833 | 10.35 | 0.00 | 35.48 | 4.45 |
3244 | 7842 | 3.505680 | CCTTGTTGATCAAAATCGTCCCA | 59.494 | 43.478 | 10.35 | 0.00 | 35.48 | 4.37 |
3245 | 7843 | 3.506067 | ACCTTGTTGATCAAAATCGTCCC | 59.494 | 43.478 | 10.35 | 0.00 | 35.48 | 4.46 |
3246 | 7844 | 4.766404 | ACCTTGTTGATCAAAATCGTCC | 57.234 | 40.909 | 10.35 | 0.00 | 35.48 | 4.79 |
3247 | 7845 | 8.742554 | ATTTTACCTTGTTGATCAAAATCGTC | 57.257 | 30.769 | 10.35 | 0.00 | 35.48 | 4.20 |
3255 | 7853 | 8.956426 | GGTCATCTTATTTTACCTTGTTGATCA | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
3256 | 7854 | 8.956426 | TGGTCATCTTATTTTACCTTGTTGATC | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
3257 | 7855 | 8.877864 | TGGTCATCTTATTTTACCTTGTTGAT | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3258 | 7856 | 8.877864 | ATGGTCATCTTATTTTACCTTGTTGA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3260 | 7858 | 9.975218 | AGTATGGTCATCTTATTTTACCTTGTT | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3261 | 7859 | 9.614792 | GAGTATGGTCATCTTATTTTACCTTGT | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3262 | 7860 | 9.613428 | TGAGTATGGTCATCTTATTTTACCTTG | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.