Multiple sequence alignment - TraesCS1D01G016300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G016300 chr1D 100.000 2621 0 0 1 2621 7443393 7446013 0.000000e+00 4841
1 TraesCS1D01G016300 chr1D 88.633 1566 136 24 540 2075 7584670 7583117 0.000000e+00 1868
2 TraesCS1D01G016300 chr1D 86.997 1492 155 21 540 2007 7076914 7078390 0.000000e+00 1644
3 TraesCS1D01G016300 chr1D 96.958 263 8 0 2359 2621 483765472 483765210 2.390000e-120 442
4 TraesCS1D01G016300 chr1D 95.620 274 9 3 2349 2621 4085629 4085900 1.110000e-118 436
5 TraesCS1D01G016300 chr1D 96.212 264 10 0 2358 2621 493061932 493061669 1.440000e-117 433
6 TraesCS1D01G016300 chr1D 93.950 281 16 1 2342 2621 389217725 389218005 8.670000e-115 424
7 TraesCS1D01G016300 chr1D 81.373 408 59 12 1 395 7586474 7586071 1.510000e-82 316
8 TraesCS1D01G016300 chr1B 87.615 1744 147 21 540 2256 9894999 9893298 0.000000e+00 1960
9 TraesCS1D01G016300 chr1B 90.266 1315 117 4 540 1845 9580662 9581974 0.000000e+00 1709
10 TraesCS1D01G016300 chr1B 89.519 1269 121 4 540 1799 9493759 9495024 0.000000e+00 1596
11 TraesCS1D01G016300 chr1B 83.234 1002 145 21 560 1550 9940536 9939547 0.000000e+00 898
12 TraesCS1D01G016300 chr1B 83.770 573 72 13 1 563 9895484 9894923 8.310000e-145 523
13 TraesCS1D01G016300 chr1B 77.817 284 45 15 1 278 9941094 9940823 2.700000e-35 159
14 TraesCS1D01G016300 chr1A 90.982 1253 100 5 535 1776 9091735 9092985 0.000000e+00 1676
15 TraesCS1D01G016300 chr1A 86.844 1429 138 30 540 1962 8668869 8670253 0.000000e+00 1552
16 TraesCS1D01G016300 chr1A 83.661 1016 155 10 612 1624 9233855 9232848 0.000000e+00 946
17 TraesCS1D01G016300 chr1A 79.915 234 40 4 1 228 9090872 9091104 5.800000e-37 165
18 TraesCS1D01G016300 chr5D 96.981 265 8 0 2357 2621 49847824 49848088 1.850000e-121 446
19 TraesCS1D01G016300 chr5D 95.238 273 13 0 2349 2621 58247943 58247671 1.440000e-117 433
20 TraesCS1D01G016300 chr2D 97.328 262 7 0 2358 2619 631135088 631134827 1.850000e-121 446
21 TraesCS1D01G016300 chr6D 94.928 276 13 1 2346 2621 3657438 3657712 5.180000e-117 431
22 TraesCS1D01G016300 chr4D 94.265 279 13 3 2343 2621 2791685 2791410 8.670000e-115 424


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G016300 chr1D 7443393 7446013 2620 False 4841.0 4841 100.0000 1 2621 1 chr1D.!!$F3 2620
1 TraesCS1D01G016300 chr1D 7076914 7078390 1476 False 1644.0 1644 86.9970 540 2007 1 chr1D.!!$F2 1467
2 TraesCS1D01G016300 chr1D 7583117 7586474 3357 True 1092.0 1868 85.0030 1 2075 2 chr1D.!!$R3 2074
3 TraesCS1D01G016300 chr1B 9580662 9581974 1312 False 1709.0 1709 90.2660 540 1845 1 chr1B.!!$F2 1305
4 TraesCS1D01G016300 chr1B 9493759 9495024 1265 False 1596.0 1596 89.5190 540 1799 1 chr1B.!!$F1 1259
5 TraesCS1D01G016300 chr1B 9893298 9895484 2186 True 1241.5 1960 85.6925 1 2256 2 chr1B.!!$R1 2255
6 TraesCS1D01G016300 chr1B 9939547 9941094 1547 True 528.5 898 80.5255 1 1550 2 chr1B.!!$R2 1549
7 TraesCS1D01G016300 chr1A 8668869 8670253 1384 False 1552.0 1552 86.8440 540 1962 1 chr1A.!!$F1 1422
8 TraesCS1D01G016300 chr1A 9232848 9233855 1007 True 946.0 946 83.6610 612 1624 1 chr1A.!!$R1 1012
9 TraesCS1D01G016300 chr1A 9090872 9092985 2113 False 920.5 1676 85.4485 1 1776 2 chr1A.!!$F2 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 187 1.754803 TCATACTCTTACGGCACAGGG 59.245 52.381 0.0 0.0 0.00 4.45 F
1268 2829 0.031178 GGCAAGGAACACACTGCAAG 59.969 55.000 0.0 0.0 42.29 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 2996 0.114954 AAGCTCTCCCCATTTTGGCA 59.885 50.0 0.00 0.0 35.79 4.92 R
2498 4095 0.035439 GATCAAAGGGGCCAGACGAA 60.035 55.0 4.39 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.568062 TGAATGTGCAAATCCAGCCAAT 59.432 40.909 0.00 0.00 0.00 3.16
34 35 4.729552 TCCAGCCAATTATCCTTGCTAT 57.270 40.909 0.00 0.00 0.00 2.97
40 41 4.261741 GCCAATTATCCTTGCTATGGTGTG 60.262 45.833 0.00 0.00 0.00 3.82
91 92 3.631227 GCTACTGTCCTGTAGGTTATCGT 59.369 47.826 11.71 0.00 40.01 3.73
105 106 1.783071 TATCGTAGCCATGACCCACA 58.217 50.000 0.00 0.00 0.00 4.17
175 179 7.833284 CGTAGGTAAACATCATACTCTTACG 57.167 40.000 0.00 0.00 0.00 3.18
176 180 6.854892 CGTAGGTAAACATCATACTCTTACGG 59.145 42.308 0.00 0.00 31.95 4.02
181 185 4.046938 ACATCATACTCTTACGGCACAG 57.953 45.455 0.00 0.00 0.00 3.66
183 187 1.754803 TCATACTCTTACGGCACAGGG 59.245 52.381 0.00 0.00 0.00 4.45
264 276 5.592054 TCTCAGTCGCCTCAAAATACATAG 58.408 41.667 0.00 0.00 0.00 2.23
310 322 6.811253 TGCAACTACGTCTTTTCCAATATT 57.189 33.333 0.00 0.00 0.00 1.28
312 324 7.302524 TGCAACTACGTCTTTTCCAATATTTC 58.697 34.615 0.00 0.00 0.00 2.17
333 345 7.780008 TTTCTTTTGTATTGTTCGAGACTCA 57.220 32.000 2.82 0.00 0.00 3.41
338 350 5.447624 TGTATTGTTCGAGACTCACAAGA 57.552 39.130 12.37 6.68 34.00 3.02
340 352 4.592485 ATTGTTCGAGACTCACAAGACT 57.408 40.909 12.37 0.00 34.00 3.24
372 384 9.097257 CAAGAATTTAACAAAATGTCAACCACT 57.903 29.630 0.00 0.00 0.00 4.00
386 401 5.593909 TGTCAACCACTTGATGAACAGAAAT 59.406 36.000 0.00 0.00 38.69 2.17
402 1956 6.737254 ACAGAAATACCTAATTGAACGGTG 57.263 37.500 0.00 0.00 32.36 4.94
434 1988 7.992754 ATTTCCAAGTATCTTGCTATCCATC 57.007 36.000 4.22 0.00 0.00 3.51
436 1990 7.855784 TTCCAAGTATCTTGCTATCCATCTA 57.144 36.000 4.22 0.00 0.00 1.98
454 2011 6.486657 TCCATCTATAAATAGTTGCTTGTGCC 59.513 38.462 3.49 0.00 38.71 5.01
458 2015 7.282585 TCTATAAATAGTTGCTTGTGCCTCAT 58.717 34.615 0.00 0.00 38.71 2.90
477 2034 5.291128 CCTCATACGAAGCGTAAACTCAAAT 59.709 40.000 3.68 0.00 45.39 2.32
481 2038 9.518906 TCATACGAAGCGTAAACTCAAATATTA 57.481 29.630 3.68 0.00 45.39 0.98
484 2041 8.248117 ACGAAGCGTAAACTCAAATATTAAGT 57.752 30.769 0.00 0.00 38.73 2.24
485 2042 8.715088 ACGAAGCGTAAACTCAAATATTAAGTT 58.285 29.630 9.32 9.32 38.73 2.66
486 2043 9.537848 CGAAGCGTAAACTCAAATATTAAGTTT 57.462 29.630 22.48 22.48 43.58 2.66
520 2077 9.411189 ACAACAGTAAAGTTTAATGGGAAACTA 57.589 29.630 22.88 0.00 46.52 2.24
533 2090 9.983024 TTAATGGGAAACTAATTAATGACCAGA 57.017 29.630 0.00 0.00 29.72 3.86
538 2095 9.803315 GGGAAACTAATTAATGACCAGAAATTC 57.197 33.333 0.00 0.00 0.00 2.17
625 2186 7.094118 ACAGTAGTTAAGTTTGTTTCTTTGCCA 60.094 33.333 0.00 0.00 0.00 4.92
636 2197 2.584835 TCTTTGCCAATGTAGGTGCT 57.415 45.000 0.00 0.00 0.00 4.40
729 2290 5.372547 AAGACTTTTACCGAAAGAATGGC 57.627 39.130 5.60 0.00 46.24 4.40
789 2350 3.395941 ACACAAGGGAAGATCTCAAACCT 59.604 43.478 0.00 0.00 0.00 3.50
859 2420 3.243359 ACAAGGGTGTTGTTGATGGAT 57.757 42.857 0.00 0.00 32.58 3.41
887 2448 4.819630 AGTCGCAGTAAAGAAACCAAATGA 59.180 37.500 0.00 0.00 0.00 2.57
889 2450 6.653320 AGTCGCAGTAAAGAAACCAAATGATA 59.347 34.615 0.00 0.00 0.00 2.15
900 2461 7.765307 AGAAACCAAATGATAGTAATGTGCTG 58.235 34.615 0.00 0.00 0.00 4.41
902 2463 4.339247 ACCAAATGATAGTAATGTGCTGGC 59.661 41.667 0.00 0.00 0.00 4.85
1014 2575 5.105146 GGATAACCCCATGCTAGTCTATGAG 60.105 48.000 0.00 0.00 0.00 2.90
1052 2613 5.643421 AGCTTGGAGGACAATCTTCATAT 57.357 39.130 0.00 0.00 38.65 1.78
1070 2631 5.611374 TCATATAGCTAACAACAAGGAGCC 58.389 41.667 0.00 0.00 35.45 4.70
1207 2768 4.319177 ACTCTTGGATGAGAACTTTTCCG 58.681 43.478 0.00 0.00 37.50 4.30
1268 2829 0.031178 GGCAAGGAACACACTGCAAG 59.969 55.000 0.00 0.00 42.29 4.01
1483 3044 7.229308 TGAGCTCTATGATAAGGAAATTGCAT 58.771 34.615 16.19 0.00 0.00 3.96
1486 3047 6.148480 GCTCTATGATAAGGAAATTGCATCGT 59.852 38.462 0.00 0.00 0.00 3.73
1516 3077 8.593492 AGATTTGGAATTTCTTAACAAGTTGC 57.407 30.769 1.81 0.00 0.00 4.17
1518 3079 8.962884 ATTTGGAATTTCTTAACAAGTTGCTT 57.037 26.923 1.81 0.00 0.00 3.91
1614 3175 0.177141 TGCTGCATAGGTCCCGTAAC 59.823 55.000 0.00 0.00 0.00 2.50
1658 3233 6.693466 TCGGAGTCATGTATGTTAAGTTGAA 58.307 36.000 0.00 0.00 0.00 2.69
1659 3234 7.327975 TCGGAGTCATGTATGTTAAGTTGAAT 58.672 34.615 0.00 0.00 0.00 2.57
1694 3269 9.337396 GGTAACTATCAATGTCAACCATCATTA 57.663 33.333 0.00 0.00 33.69 1.90
1730 3305 9.485206 TTCCAAGAAATTTGTACTACTGTAGTC 57.515 33.333 22.79 14.83 40.14 2.59
1776 3351 8.780616 AAACATATGTATGGATTGATTTCCCA 57.219 30.769 9.21 0.00 38.00 4.37
1812 3387 7.672983 ATGTAATAGGGTAGCAATTTGATCG 57.327 36.000 0.00 0.00 0.00 3.69
1835 3410 1.098129 TCCTGCAGATCTCGACGAGG 61.098 60.000 23.92 9.53 0.00 4.63
1840 3435 1.066303 GCAGATCTCGACGAGGTCATT 59.934 52.381 33.34 16.02 41.83 2.57
1857 3452 6.534634 AGGTCATTACAATATCTGGGTTAGC 58.465 40.000 0.00 0.00 0.00 3.09
1869 3464 3.637229 TCTGGGTTAGCTACATCACTAGC 59.363 47.826 0.00 0.00 39.69 3.42
1972 3568 6.920569 AGTTGAGTAAAAATATAGTGGGCG 57.079 37.500 0.00 0.00 0.00 6.13
1988 3584 1.252904 GGCGGTCTACCCACACAGTA 61.253 60.000 0.00 0.00 0.00 2.74
2007 3603 3.891366 AGTAGTTGTTGAATTGCAGCCTT 59.109 39.130 0.00 0.00 0.00 4.35
2034 3630 0.520404 GCTAATGCATCAGCCATCGG 59.480 55.000 11.08 0.00 41.13 4.18
2063 3659 2.562296 AGGGAAGTACCACCATGTGAT 58.438 47.619 7.97 0.00 41.20 3.06
2082 3679 4.911610 GTGATGACCAAAGACATTGTTTCG 59.088 41.667 0.00 0.00 37.32 3.46
2084 3681 4.285807 TGACCAAAGACATTGTTTCGTG 57.714 40.909 0.00 0.00 37.32 4.35
2121 3718 7.652105 GCTAACTGCACACTATATAAGCTTACA 59.348 37.037 8.70 0.00 42.31 2.41
2127 3724 7.984617 TGCACACTATATAAGCTTACAATGACA 59.015 33.333 8.70 5.26 0.00 3.58
2191 3788 6.662414 TTTCTCTGTGTAGTTGTTGTCAAG 57.338 37.500 0.00 0.00 33.97 3.02
2197 3794 3.560068 GTGTAGTTGTTGTCAAGGTCCTG 59.440 47.826 0.00 0.00 33.97 3.86
2234 3831 5.809001 TGAAGAGTTTGATCTAGCCATTGT 58.191 37.500 0.00 0.00 0.00 2.71
2262 3859 5.705609 TTTTCTGCCATAGTTTGTCTTCC 57.294 39.130 0.00 0.00 0.00 3.46
2263 3860 4.365514 TTCTGCCATAGTTTGTCTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
2264 3861 4.574674 TCTGCCATAGTTTGTCTTCCAT 57.425 40.909 0.00 0.00 0.00 3.41
2265 3862 4.922206 TCTGCCATAGTTTGTCTTCCATT 58.078 39.130 0.00 0.00 0.00 3.16
2266 3863 4.701651 TCTGCCATAGTTTGTCTTCCATTG 59.298 41.667 0.00 0.00 0.00 2.82
2267 3864 4.406456 TGCCATAGTTTGTCTTCCATTGT 58.594 39.130 0.00 0.00 0.00 2.71
2268 3865 4.832266 TGCCATAGTTTGTCTTCCATTGTT 59.168 37.500 0.00 0.00 0.00 2.83
2269 3866 5.163513 GCCATAGTTTGTCTTCCATTGTTG 58.836 41.667 0.00 0.00 0.00 3.33
2270 3867 5.278957 GCCATAGTTTGTCTTCCATTGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
2271 3868 6.072175 GCCATAGTTTGTCTTCCATTGTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
2272 3869 7.523052 GCCATAGTTTGTCTTCCATTGTTGTAA 60.523 37.037 0.00 0.00 0.00 2.41
2273 3870 8.023128 CCATAGTTTGTCTTCCATTGTTGTAAG 58.977 37.037 0.00 0.00 0.00 2.34
2274 3871 8.783093 CATAGTTTGTCTTCCATTGTTGTAAGA 58.217 33.333 0.00 0.00 0.00 2.10
2275 3872 7.639113 AGTTTGTCTTCCATTGTTGTAAGAA 57.361 32.000 0.00 0.00 30.24 2.52
2276 3873 7.480810 AGTTTGTCTTCCATTGTTGTAAGAAC 58.519 34.615 0.00 0.00 30.24 3.01
2277 3874 6.385649 TTGTCTTCCATTGTTGTAAGAACC 57.614 37.500 0.00 0.00 30.24 3.62
2278 3875 5.441500 TGTCTTCCATTGTTGTAAGAACCA 58.558 37.500 0.00 0.00 30.24 3.67
2279 3876 5.888724 TGTCTTCCATTGTTGTAAGAACCAA 59.111 36.000 0.00 0.00 30.24 3.67
2280 3877 6.183360 TGTCTTCCATTGTTGTAAGAACCAAC 60.183 38.462 0.00 0.00 41.97 3.77
2281 3878 4.822036 TCCATTGTTGTAAGAACCAACG 57.178 40.909 0.00 0.00 44.00 4.10
2282 3879 4.452825 TCCATTGTTGTAAGAACCAACGA 58.547 39.130 0.00 0.00 44.00 3.85
2283 3880 4.273969 TCCATTGTTGTAAGAACCAACGAC 59.726 41.667 0.00 0.00 44.00 4.34
2284 3881 4.274950 CCATTGTTGTAAGAACCAACGACT 59.725 41.667 0.00 0.00 44.00 4.18
2285 3882 5.467399 CCATTGTTGTAAGAACCAACGACTA 59.533 40.000 0.00 0.00 44.00 2.59
2286 3883 6.148811 CCATTGTTGTAAGAACCAACGACTAT 59.851 38.462 0.00 0.00 44.00 2.12
2287 3884 7.308348 CCATTGTTGTAAGAACCAACGACTATT 60.308 37.037 0.00 0.00 44.00 1.73
2288 3885 6.533819 TGTTGTAAGAACCAACGACTATTG 57.466 37.500 0.00 0.00 44.00 1.90
2289 3886 6.282167 TGTTGTAAGAACCAACGACTATTGA 58.718 36.000 0.00 0.00 44.00 2.57
2290 3887 6.422701 TGTTGTAAGAACCAACGACTATTGAG 59.577 38.462 0.00 0.00 44.00 3.02
2291 3888 4.927425 TGTAAGAACCAACGACTATTGAGC 59.073 41.667 0.00 0.00 0.00 4.26
2292 3889 3.963428 AGAACCAACGACTATTGAGCT 57.037 42.857 0.00 0.00 0.00 4.09
2293 3890 4.273148 AGAACCAACGACTATTGAGCTT 57.727 40.909 0.00 0.00 0.00 3.74
2294 3891 3.997021 AGAACCAACGACTATTGAGCTTG 59.003 43.478 0.00 0.00 0.00 4.01
2295 3892 3.402628 ACCAACGACTATTGAGCTTGT 57.597 42.857 0.00 0.00 0.00 3.16
2296 3893 3.740115 ACCAACGACTATTGAGCTTGTT 58.260 40.909 0.00 0.00 0.00 2.83
2297 3894 3.498397 ACCAACGACTATTGAGCTTGTTG 59.502 43.478 0.00 0.00 32.94 3.33
2298 3895 3.745975 CCAACGACTATTGAGCTTGTTGA 59.254 43.478 3.94 0.00 33.91 3.18
2299 3896 4.213270 CCAACGACTATTGAGCTTGTTGAA 59.787 41.667 3.94 0.00 33.91 2.69
2300 3897 4.992381 ACGACTATTGAGCTTGTTGAAC 57.008 40.909 0.00 0.00 0.00 3.18
2301 3898 3.746492 ACGACTATTGAGCTTGTTGAACC 59.254 43.478 0.00 0.00 0.00 3.62
2302 3899 3.997021 CGACTATTGAGCTTGTTGAACCT 59.003 43.478 0.00 0.00 0.00 3.50
2303 3900 4.452455 CGACTATTGAGCTTGTTGAACCTT 59.548 41.667 0.00 0.00 0.00 3.50
2304 3901 5.049405 CGACTATTGAGCTTGTTGAACCTTT 60.049 40.000 0.00 0.00 0.00 3.11
2305 3902 6.319141 ACTATTGAGCTTGTTGAACCTTTC 57.681 37.500 0.00 0.00 0.00 2.62
2306 3903 5.827797 ACTATTGAGCTTGTTGAACCTTTCA 59.172 36.000 0.00 0.00 38.04 2.69
2307 3904 5.796424 ATTGAGCTTGTTGAACCTTTCAT 57.204 34.783 0.00 0.00 39.84 2.57
2308 3905 4.572985 TGAGCTTGTTGAACCTTTCATG 57.427 40.909 0.00 0.00 39.84 3.07
2309 3906 4.206375 TGAGCTTGTTGAACCTTTCATGA 58.794 39.130 0.00 0.00 39.84 3.07
2310 3907 4.828939 TGAGCTTGTTGAACCTTTCATGAT 59.171 37.500 0.00 0.00 39.84 2.45
2311 3908 6.003326 TGAGCTTGTTGAACCTTTCATGATA 58.997 36.000 0.00 0.00 39.84 2.15
2312 3909 6.489700 TGAGCTTGTTGAACCTTTCATGATAA 59.510 34.615 0.00 0.00 39.84 1.75
2313 3910 6.917533 AGCTTGTTGAACCTTTCATGATAAG 58.082 36.000 0.00 3.60 39.84 1.73
2314 3911 6.491403 AGCTTGTTGAACCTTTCATGATAAGT 59.509 34.615 0.00 0.00 39.84 2.24
2315 3912 7.665559 AGCTTGTTGAACCTTTCATGATAAGTA 59.334 33.333 0.00 0.00 39.84 2.24
2316 3913 8.462016 GCTTGTTGAACCTTTCATGATAAGTAT 58.538 33.333 0.00 0.00 39.84 2.12
2360 3957 8.809468 TTCAGTACTAATCTGACATAGTCACT 57.191 34.615 0.00 7.81 40.90 3.41
2361 3958 9.901172 TTCAGTACTAATCTGACATAGTCACTA 57.099 33.333 0.00 0.00 40.90 2.74
2362 3959 9.549078 TCAGTACTAATCTGACATAGTCACTAG 57.451 37.037 0.00 0.00 37.67 2.57
2363 3960 9.332502 CAGTACTAATCTGACATAGTCACTAGT 57.667 37.037 0.00 12.57 37.67 2.57
2371 3968 8.631480 TCTGACATAGTCACTAGTAGAAAACA 57.369 34.615 3.59 0.00 37.67 2.83
2372 3969 8.731605 TCTGACATAGTCACTAGTAGAAAACAG 58.268 37.037 3.59 0.00 37.67 3.16
2373 3970 7.827701 TGACATAGTCACTAGTAGAAAACAGG 58.172 38.462 3.59 0.00 37.67 4.00
2374 3971 7.093902 TGACATAGTCACTAGTAGAAAACAGGG 60.094 40.741 3.59 0.00 37.67 4.45
2375 3972 4.538746 AGTCACTAGTAGAAAACAGGGC 57.461 45.455 3.59 0.00 0.00 5.19
2376 3973 4.161102 AGTCACTAGTAGAAAACAGGGCT 58.839 43.478 3.59 0.00 0.00 5.19
2377 3974 4.593634 AGTCACTAGTAGAAAACAGGGCTT 59.406 41.667 3.59 0.00 0.00 4.35
2378 3975 5.071923 AGTCACTAGTAGAAAACAGGGCTTT 59.928 40.000 3.59 0.00 0.00 3.51
2379 3976 5.179555 GTCACTAGTAGAAAACAGGGCTTTG 59.820 44.000 3.59 0.00 0.00 2.77
2380 3977 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
2381 3978 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
2382 3979 3.487372 AGTAGAAAACAGGGCTTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
2383 3980 2.452600 AGAAAACAGGGCTTTGGTCA 57.547 45.000 0.00 0.00 0.00 4.02
2384 3981 2.031870 AGAAAACAGGGCTTTGGTCAC 58.968 47.619 0.00 0.00 0.00 3.67
2385 3982 1.754226 GAAAACAGGGCTTTGGTCACA 59.246 47.619 0.00 0.00 0.00 3.58
2386 3983 1.402787 AAACAGGGCTTTGGTCACAG 58.597 50.000 0.00 0.00 0.00 3.66
2387 3984 0.468029 AACAGGGCTTTGGTCACAGG 60.468 55.000 0.00 0.00 0.00 4.00
2388 3985 1.604593 CAGGGCTTTGGTCACAGGG 60.605 63.158 0.00 0.00 0.00 4.45
2389 3986 2.991540 GGGCTTTGGTCACAGGGC 60.992 66.667 0.00 0.00 0.00 5.19
2390 3987 2.203480 GGCTTTGGTCACAGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
2391 3988 1.832167 GGCTTTGGTCACAGGGCAA 60.832 57.895 0.00 0.00 0.00 4.52
2392 3989 1.363807 GCTTTGGTCACAGGGCAAC 59.636 57.895 0.00 0.00 0.00 4.17
2393 3990 1.391157 GCTTTGGTCACAGGGCAACA 61.391 55.000 0.00 0.00 39.74 3.33
2394 3991 1.331214 CTTTGGTCACAGGGCAACAT 58.669 50.000 0.00 0.00 39.74 2.71
2395 3992 1.688197 CTTTGGTCACAGGGCAACATT 59.312 47.619 0.00 0.00 39.74 2.71
2396 3993 1.327303 TTGGTCACAGGGCAACATTC 58.673 50.000 0.00 0.00 39.74 2.67
2397 3994 0.184692 TGGTCACAGGGCAACATTCA 59.815 50.000 0.00 0.00 39.74 2.57
2398 3995 0.598065 GGTCACAGGGCAACATTCAC 59.402 55.000 0.00 0.00 39.74 3.18
2399 3996 1.317613 GTCACAGGGCAACATTCACA 58.682 50.000 0.00 0.00 39.74 3.58
2400 3997 1.888512 GTCACAGGGCAACATTCACAT 59.111 47.619 0.00 0.00 39.74 3.21
2401 3998 2.297033 GTCACAGGGCAACATTCACATT 59.703 45.455 0.00 0.00 39.74 2.71
2402 3999 3.505680 GTCACAGGGCAACATTCACATTA 59.494 43.478 0.00 0.00 39.74 1.90
2403 4000 3.758023 TCACAGGGCAACATTCACATTAG 59.242 43.478 0.00 0.00 39.74 1.73
2404 4001 3.507233 CACAGGGCAACATTCACATTAGT 59.493 43.478 0.00 0.00 39.74 2.24
2405 4002 3.758554 ACAGGGCAACATTCACATTAGTC 59.241 43.478 0.00 0.00 39.74 2.59
2406 4003 3.129287 CAGGGCAACATTCACATTAGTCC 59.871 47.826 0.00 0.00 39.74 3.85
2407 4004 2.427095 GGGCAACATTCACATTAGTCCC 59.573 50.000 0.00 0.00 39.74 4.46
2408 4005 2.097466 GGCAACATTCACATTAGTCCCG 59.903 50.000 0.00 0.00 0.00 5.14
2409 4006 2.097466 GCAACATTCACATTAGTCCCGG 59.903 50.000 0.00 0.00 0.00 5.73
2410 4007 3.343617 CAACATTCACATTAGTCCCGGT 58.656 45.455 0.00 0.00 0.00 5.28
2411 4008 3.713826 ACATTCACATTAGTCCCGGTT 57.286 42.857 0.00 0.00 0.00 4.44
2412 4009 3.606687 ACATTCACATTAGTCCCGGTTC 58.393 45.455 0.00 0.00 0.00 3.62
2413 4010 3.008594 ACATTCACATTAGTCCCGGTTCA 59.991 43.478 0.00 0.00 0.00 3.18
2414 4011 3.328382 TTCACATTAGTCCCGGTTCAG 57.672 47.619 0.00 0.00 0.00 3.02
2415 4012 2.253610 TCACATTAGTCCCGGTTCAGT 58.746 47.619 0.00 0.00 0.00 3.41
2416 4013 2.232941 TCACATTAGTCCCGGTTCAGTC 59.767 50.000 0.00 0.00 0.00 3.51
2417 4014 2.028476 CACATTAGTCCCGGTTCAGTCA 60.028 50.000 0.00 0.00 0.00 3.41
2418 4015 2.028385 ACATTAGTCCCGGTTCAGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
2419 4016 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
2420 4017 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
2421 4018 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
2422 4019 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
2426 4023 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
2427 4024 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
2434 4031 1.259609 TCACGAACCGGGACTAATGT 58.740 50.000 6.32 0.00 32.99 2.71
2435 4032 1.067425 TCACGAACCGGGACTAATGTG 60.067 52.381 6.32 4.66 32.99 3.21
2436 4033 1.067425 CACGAACCGGGACTAATGTGA 60.067 52.381 6.32 0.00 28.17 3.58
2437 4034 1.203994 ACGAACCGGGACTAATGTGAG 59.796 52.381 6.32 0.00 0.00 3.51
2438 4035 1.653151 GAACCGGGACTAATGTGAGC 58.347 55.000 6.32 0.00 0.00 4.26
2439 4036 0.981183 AACCGGGACTAATGTGAGCA 59.019 50.000 6.32 0.00 0.00 4.26
2440 4037 1.204146 ACCGGGACTAATGTGAGCAT 58.796 50.000 6.32 0.00 36.80 3.79
2441 4038 1.559682 ACCGGGACTAATGTGAGCATT 59.440 47.619 6.32 0.00 46.14 3.56
2442 4039 2.026262 ACCGGGACTAATGTGAGCATTT 60.026 45.455 6.32 0.00 42.19 2.32
2443 4040 2.355756 CCGGGACTAATGTGAGCATTTG 59.644 50.000 0.00 0.00 42.19 2.32
2448 4045 3.009723 ACTAATGTGAGCATTTGTCCCG 58.990 45.455 0.00 0.00 43.77 5.14
2449 4046 1.176527 AATGTGAGCATTTGTCCCGG 58.823 50.000 0.00 0.00 42.19 5.73
2450 4047 0.038166 ATGTGAGCATTTGTCCCGGT 59.962 50.000 0.00 0.00 29.54 5.28
2451 4048 0.179004 TGTGAGCATTTGTCCCGGTT 60.179 50.000 0.00 0.00 0.00 4.44
2452 4049 0.521735 GTGAGCATTTGTCCCGGTTC 59.478 55.000 0.00 0.00 0.00 3.62
2453 4050 0.953471 TGAGCATTTGTCCCGGTTCG 60.953 55.000 0.00 0.00 0.00 3.95
2454 4051 0.953960 GAGCATTTGTCCCGGTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
2455 4052 1.209127 GCATTTGTCCCGGTTCGTG 59.791 57.895 0.00 0.00 0.00 4.35
2456 4053 1.231958 GCATTTGTCCCGGTTCGTGA 61.232 55.000 0.00 0.00 0.00 4.35
2457 4054 0.796312 CATTTGTCCCGGTTCGTGAG 59.204 55.000 0.00 0.00 0.00 3.51
2458 4055 0.321298 ATTTGTCCCGGTTCGTGAGG 60.321 55.000 0.00 0.00 0.00 3.86
2459 4056 1.688269 TTTGTCCCGGTTCGTGAGGT 61.688 55.000 0.00 0.00 0.00 3.85
2460 4057 2.091102 TTGTCCCGGTTCGTGAGGTC 62.091 60.000 0.00 0.00 0.00 3.85
2461 4058 2.203523 TCCCGGTTCGTGAGGTCA 60.204 61.111 0.00 0.00 0.00 4.02
2462 4059 2.261671 CCCGGTTCGTGAGGTCAG 59.738 66.667 0.00 0.00 0.00 3.51
2463 4060 2.261671 CCGGTTCGTGAGGTCAGG 59.738 66.667 0.00 0.00 0.00 3.86
2464 4061 2.261671 CGGTTCGTGAGGTCAGGG 59.738 66.667 0.11 0.00 33.00 4.45
2465 4062 2.663196 GGTTCGTGAGGTCAGGGG 59.337 66.667 0.11 0.00 33.00 4.79
2466 4063 2.047179 GTTCGTGAGGTCAGGGGC 60.047 66.667 0.11 0.00 33.00 5.80
2467 4064 3.319198 TTCGTGAGGTCAGGGGCC 61.319 66.667 0.00 0.00 33.00 5.80
2468 4065 3.846405 TTCGTGAGGTCAGGGGCCT 62.846 63.158 0.84 0.00 39.42 5.19
2469 4066 4.087892 CGTGAGGTCAGGGGCCTG 62.088 72.222 0.84 0.00 44.86 4.85
2470 4067 4.416738 GTGAGGTCAGGGGCCTGC 62.417 72.222 0.84 0.00 43.31 4.85
2492 4089 4.047125 CCTCGTGGGGGCATTGGT 62.047 66.667 0.00 0.00 0.00 3.67
2493 4090 2.438434 CTCGTGGGGGCATTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
2494 4091 3.995506 CTCGTGGGGGCATTGGTCC 62.996 68.421 0.00 0.00 38.40 4.46
2500 4097 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
2501 4098 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
2502 4099 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
2503 4100 2.396157 GCATTGGTCCCGGTTCGTC 61.396 63.158 0.00 0.00 0.00 4.20
2504 4101 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
2505 4102 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
2506 4103 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
2507 4104 4.754667 GGTCCCGGTTCGTCTGGC 62.755 72.222 0.00 0.00 41.11 4.85
2508 4105 4.754667 GTCCCGGTTCGTCTGGCC 62.755 72.222 0.00 0.00 41.11 5.36
2512 4109 4.016706 CGGTTCGTCTGGCCCCTT 62.017 66.667 0.00 0.00 0.00 3.95
2513 4110 2.434774 GGTTCGTCTGGCCCCTTT 59.565 61.111 0.00 0.00 0.00 3.11
2514 4111 1.971695 GGTTCGTCTGGCCCCTTTG 60.972 63.158 0.00 0.00 0.00 2.77
2515 4112 1.072505 GTTCGTCTGGCCCCTTTGA 59.927 57.895 0.00 0.00 0.00 2.69
2516 4113 0.322546 GTTCGTCTGGCCCCTTTGAT 60.323 55.000 0.00 0.00 0.00 2.57
2517 4114 0.035439 TTCGTCTGGCCCCTTTGATC 60.035 55.000 0.00 0.00 0.00 2.92
2518 4115 1.452108 CGTCTGGCCCCTTTGATCC 60.452 63.158 0.00 0.00 0.00 3.36
2519 4116 1.076705 GTCTGGCCCCTTTGATCCC 60.077 63.158 0.00 0.00 0.00 3.85
2520 4117 2.124151 CTGGCCCCTTTGATCCCG 60.124 66.667 0.00 0.00 0.00 5.14
2521 4118 3.721370 CTGGCCCCTTTGATCCCGG 62.721 68.421 0.00 0.00 0.00 5.73
2522 4119 3.739613 GGCCCCTTTGATCCCGGT 61.740 66.667 0.00 0.00 0.00 5.28
2523 4120 2.359011 GCCCCTTTGATCCCGGTT 59.641 61.111 0.00 0.00 0.00 4.44
2524 4121 2.052104 GCCCCTTTGATCCCGGTTG 61.052 63.158 0.00 0.00 0.00 3.77
2525 4122 1.379843 CCCCTTTGATCCCGGTTGG 60.380 63.158 0.00 0.00 0.00 3.77
2526 4123 1.382629 CCCTTTGATCCCGGTTGGT 59.617 57.895 0.00 0.00 34.77 3.67
2527 4124 0.965363 CCCTTTGATCCCGGTTGGTG 60.965 60.000 0.00 0.00 34.77 4.17
2528 4125 0.965363 CCTTTGATCCCGGTTGGTGG 60.965 60.000 0.00 0.00 34.77 4.61
2535 4132 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
2537 4134 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
2538 4135 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
2539 4136 3.943691 TTGGTGGGACGAACCGGG 61.944 66.667 6.32 0.00 40.86 5.73
2540 4137 4.938074 TGGTGGGACGAACCGGGA 62.938 66.667 6.32 0.00 40.86 5.14
2541 4138 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
2542 4139 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
2543 4140 4.938074 TGGGACGAACCGGGACCA 62.938 66.667 6.32 1.29 40.11 4.02
2544 4141 3.628982 GGGACGAACCGGGACCAA 61.629 66.667 6.32 0.00 40.11 3.67
2545 4142 2.666812 GGACGAACCGGGACCAAT 59.333 61.111 6.32 0.00 0.00 3.16
2546 4143 1.743995 GGACGAACCGGGACCAATG 60.744 63.158 6.32 0.00 0.00 2.82
2547 4144 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
2548 4145 2.349755 CGAACCGGGACCAATGGT 59.650 61.111 3.74 3.74 39.44 3.55
2556 4153 4.522971 GACCAATGGTCCTCGCTC 57.477 61.111 21.30 0.00 46.19 5.03
2557 4154 1.153349 GACCAATGGTCCTCGCTCC 60.153 63.158 21.30 0.00 46.19 4.70
2558 4155 1.613630 ACCAATGGTCCTCGCTCCT 60.614 57.895 0.00 0.00 0.00 3.69
2559 4156 1.153289 CCAATGGTCCTCGCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
2560 4157 1.153289 CAATGGTCCTCGCTCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
2561 4158 3.036429 AATGGTCCTCGCTCCTGGC 62.036 63.158 0.00 0.00 37.64 4.85
2571 4168 3.341629 CTCCTGGCCCACCACCAT 61.342 66.667 0.00 0.00 42.67 3.55
2572 4169 2.863484 TCCTGGCCCACCACCATT 60.863 61.111 0.00 0.00 42.67 3.16
2573 4170 2.681064 CCTGGCCCACCACCATTG 60.681 66.667 0.00 0.00 42.67 2.82
2582 4179 2.438795 CCACCATTGGTCCCGGTT 59.561 61.111 5.04 0.00 38.23 4.44
2583 4180 1.976474 CCACCATTGGTCCCGGTTG 60.976 63.158 5.04 0.00 38.23 3.77
2584 4181 1.976474 CACCATTGGTCCCGGTTGG 60.976 63.158 5.04 0.00 31.02 3.77
2585 4182 2.438795 CCATTGGTCCCGGTTGGT 59.561 61.111 0.00 0.00 34.77 3.67
2586 4183 1.135068 ACCATTGGTCCCGGTTGGTA 61.135 55.000 1.37 0.00 38.87 3.25
2587 4184 0.393808 CCATTGGTCCCGGTTGGTAG 60.394 60.000 0.00 0.00 34.77 3.18
2588 4185 1.029947 CATTGGTCCCGGTTGGTAGC 61.030 60.000 0.00 0.00 34.77 3.58
2589 4186 1.205460 ATTGGTCCCGGTTGGTAGCT 61.205 55.000 0.00 0.00 34.77 3.32
2590 4187 1.420532 TTGGTCCCGGTTGGTAGCTT 61.421 55.000 0.00 0.00 34.77 3.74
2591 4188 1.376812 GGTCCCGGTTGGTAGCTTG 60.377 63.158 0.00 0.00 34.77 4.01
2592 4189 1.675219 GTCCCGGTTGGTAGCTTGA 59.325 57.895 0.00 0.00 34.77 3.02
2593 4190 0.035739 GTCCCGGTTGGTAGCTTGAA 59.964 55.000 0.00 0.00 34.77 2.69
2594 4191 0.035739 TCCCGGTTGGTAGCTTGAAC 59.964 55.000 0.00 0.00 34.77 3.18
2595 4192 0.958876 CCCGGTTGGTAGCTTGAACC 60.959 60.000 0.00 9.97 36.55 3.62
2597 4194 2.551644 GGTTGGTAGCTTGAACCGG 58.448 57.895 0.00 0.00 40.08 5.28
2598 4195 0.958876 GGTTGGTAGCTTGAACCGGG 60.959 60.000 6.32 0.00 40.08 5.73
2599 4196 0.035739 GTTGGTAGCTTGAACCGGGA 59.964 55.000 6.32 0.00 40.08 5.14
2600 4197 0.035739 TTGGTAGCTTGAACCGGGAC 59.964 55.000 6.32 0.00 40.08 4.46
2601 4198 1.078637 GGTAGCTTGAACCGGGACC 60.079 63.158 6.32 0.00 0.00 4.46
2602 4199 1.675219 GTAGCTTGAACCGGGACCA 59.325 57.895 6.32 0.00 0.00 4.02
2603 4200 0.391263 GTAGCTTGAACCGGGACCAG 60.391 60.000 6.32 1.40 0.00 4.00
2604 4201 0.543410 TAGCTTGAACCGGGACCAGA 60.543 55.000 6.32 0.00 0.00 3.86
2605 4202 1.376037 GCTTGAACCGGGACCAGAG 60.376 63.158 6.32 0.00 0.00 3.35
2606 4203 1.296715 CTTGAACCGGGACCAGAGG 59.703 63.158 6.32 0.00 0.00 3.69
2607 4204 2.804828 CTTGAACCGGGACCAGAGGC 62.805 65.000 6.32 0.00 0.00 4.70
2608 4205 3.003763 GAACCGGGACCAGAGGCT 61.004 66.667 6.32 0.00 0.00 4.58
2609 4206 3.003763 AACCGGGACCAGAGGCTC 61.004 66.667 6.32 6.34 0.00 4.70
2610 4207 3.846405 AACCGGGACCAGAGGCTCA 62.846 63.158 18.26 0.00 0.00 4.26
2611 4208 3.775654 CCGGGACCAGAGGCTCAC 61.776 72.222 18.26 4.97 0.00 3.51
2612 4209 3.775654 CGGGACCAGAGGCTCACC 61.776 72.222 18.26 13.39 0.00 4.02
2613 4210 3.403558 GGGACCAGAGGCTCACCC 61.404 72.222 18.26 18.14 36.11 4.61
2615 4212 1.920835 GGACCAGAGGCTCACCCTT 60.921 63.158 18.26 0.00 46.60 3.95
2616 4213 1.492993 GGACCAGAGGCTCACCCTTT 61.493 60.000 18.26 0.00 46.60 3.11
2617 4214 1.276622 GACCAGAGGCTCACCCTTTA 58.723 55.000 18.26 0.00 46.60 1.85
2618 4215 1.208293 GACCAGAGGCTCACCCTTTAG 59.792 57.143 18.26 0.00 46.60 1.85
2619 4216 1.280457 CCAGAGGCTCACCCTTTAGT 58.720 55.000 18.26 0.00 46.60 2.24
2620 4217 1.208293 CCAGAGGCTCACCCTTTAGTC 59.792 57.143 18.26 0.00 46.60 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.278574 GCACACACCATAGCAAGGATAA 58.721 45.455 0.00 0.00 0.00 1.75
34 35 4.855105 GTGTCTCTGCACACACCA 57.145 55.556 7.36 0.00 45.25 4.17
40 41 0.389166 CTCCTTCGGTGTCTCTGCAC 60.389 60.000 0.00 0.00 38.56 4.57
91 92 1.702401 TCAGTTTGTGGGTCATGGCTA 59.298 47.619 0.00 0.00 0.00 3.93
105 106 4.096382 ACTTTTGAGTGCATCGTTCAGTTT 59.904 37.500 0.00 0.00 0.00 2.66
171 175 2.104451 TGAAAAGTACCCTGTGCCGTAA 59.896 45.455 0.00 0.00 0.00 3.18
175 179 2.890945 ACATTGAAAAGTACCCTGTGCC 59.109 45.455 0.00 0.00 0.00 5.01
176 180 5.699097 TTACATTGAAAAGTACCCTGTGC 57.301 39.130 0.00 0.00 0.00 4.57
236 248 1.458398 TTGAGGCGACTGAGAGAGAG 58.542 55.000 0.00 0.00 44.43 3.20
310 322 6.759356 TGTGAGTCTCGAACAATACAAAAGAA 59.241 34.615 0.00 0.00 0.00 2.52
312 324 6.525121 TGTGAGTCTCGAACAATACAAAAG 57.475 37.500 0.00 0.00 0.00 2.27
333 345 8.958119 TGTTAAATTCTTGTGACTAGTCTTGT 57.042 30.769 23.01 0.82 0.00 3.16
362 374 4.149511 TCTGTTCATCAAGTGGTTGACA 57.850 40.909 0.00 0.00 45.58 3.58
386 401 5.795972 TGAATGTCACCGTTCAATTAGGTA 58.204 37.500 0.00 0.00 42.25 3.08
402 1956 7.542025 AGCAAGATACTTGGAAATTGAATGTC 58.458 34.615 12.36 0.00 0.00 3.06
434 1988 6.925610 TGAGGCACAAGCAACTATTTATAG 57.074 37.500 0.00 0.00 44.61 1.31
436 1990 6.017934 CGTATGAGGCACAAGCAACTATTTAT 60.018 38.462 0.00 0.00 44.61 1.40
443 2000 1.438651 TCGTATGAGGCACAAGCAAC 58.561 50.000 0.00 0.00 44.61 4.17
449 2006 0.812549 TACGCTTCGTATGAGGCACA 59.187 50.000 18.05 3.06 46.84 4.57
454 2011 5.756950 TTTGAGTTTACGCTTCGTATGAG 57.243 39.130 0.00 0.00 41.97 2.90
458 2015 9.357652 ACTTAATATTTGAGTTTACGCTTCGTA 57.642 29.630 0.00 0.00 41.54 3.43
493 2050 9.411189 AGTTTCCCATTAAACTTTACTGTTGTA 57.589 29.630 0.00 0.00 45.20 2.41
494 2051 8.301252 AGTTTCCCATTAAACTTTACTGTTGT 57.699 30.769 0.00 0.00 45.20 3.32
507 2064 9.983024 TCTGGTCATTAATTAGTTTCCCATTAA 57.017 29.630 0.00 0.00 0.00 1.40
508 2065 9.983024 TTCTGGTCATTAATTAGTTTCCCATTA 57.017 29.630 0.00 0.00 0.00 1.90
509 2066 8.893563 TTCTGGTCATTAATTAGTTTCCCATT 57.106 30.769 0.00 0.00 0.00 3.16
510 2067 8.893563 TTTCTGGTCATTAATTAGTTTCCCAT 57.106 30.769 0.00 0.00 0.00 4.00
511 2068 8.893563 ATTTCTGGTCATTAATTAGTTTCCCA 57.106 30.769 0.00 0.00 0.00 4.37
512 2069 9.803315 GAATTTCTGGTCATTAATTAGTTTCCC 57.197 33.333 0.00 0.00 0.00 3.97
602 2161 8.539674 CATTGGCAAAGAAACAAACTTAACTAC 58.460 33.333 3.01 0.00 0.00 2.73
625 2186 3.045634 TGCCACCTATAGCACCTACATT 58.954 45.455 0.00 0.00 33.08 2.71
636 2197 4.780815 CCAAGACAAGAATGCCACCTATA 58.219 43.478 0.00 0.00 0.00 1.31
678 2239 1.526887 TGCTTCTCTTTGCGAAGAACG 59.473 47.619 17.16 7.18 41.19 3.95
729 2290 7.028926 TCTAGCTTTCTCTAATGTAAGACCG 57.971 40.000 0.00 0.00 0.00 4.79
823 2384 5.126384 CACCCTTGTAAACTTCACCAAAGAA 59.874 40.000 0.00 0.00 38.44 2.52
824 2385 4.642885 CACCCTTGTAAACTTCACCAAAGA 59.357 41.667 0.00 0.00 38.44 2.52
859 2420 7.966246 TTGGTTTCTTTACTGCGACTATAAA 57.034 32.000 0.00 0.00 0.00 1.40
887 2448 2.434336 TCCTTCGCCAGCACATTACTAT 59.566 45.455 0.00 0.00 0.00 2.12
889 2450 0.613260 TCCTTCGCCAGCACATTACT 59.387 50.000 0.00 0.00 0.00 2.24
900 2461 0.887933 TTGGAAATTGCTCCTTCGCC 59.112 50.000 0.00 0.00 36.35 5.54
902 2463 4.439305 TCATTTGGAAATTGCTCCTTCG 57.561 40.909 0.00 0.00 36.35 3.79
1014 2575 3.192212 CCAAGCTTCCTTTGGAGATGAAC 59.808 47.826 0.00 0.00 31.21 3.18
1052 2613 3.173965 AGAGGCTCCTTGTTGTTAGCTA 58.826 45.455 11.71 0.00 35.30 3.32
1070 2631 4.442375 AGACGTACATCCAAGTTGAGAG 57.558 45.455 3.87 0.00 0.00 3.20
1275 2836 5.606329 TGGATCCATATAAGACATGTCACCA 59.394 40.000 27.02 12.02 0.00 4.17
1435 2996 0.114954 AAGCTCTCCCCATTTTGGCA 59.885 50.000 0.00 0.00 35.79 4.92
1436 2997 0.533951 CAAGCTCTCCCCATTTTGGC 59.466 55.000 0.00 0.00 35.79 4.52
1466 3027 5.240183 CCTGACGATGCAATTTCCTTATCAT 59.760 40.000 0.00 0.00 0.00 2.45
1483 3044 5.165961 AGAAATTCCAAATCTCCTGACGA 57.834 39.130 0.00 0.00 0.00 4.20
1486 3047 8.704849 TTGTTAAGAAATTCCAAATCTCCTGA 57.295 30.769 0.00 0.00 0.00 3.86
1516 3077 4.567971 AGACACTCAAGAGCAATCTCAAG 58.432 43.478 0.00 0.00 41.81 3.02
1518 3079 4.613925 AAGACACTCAAGAGCAATCTCA 57.386 40.909 0.00 0.00 41.81 3.27
1614 3175 4.510340 CCGATTCGTAAATGAACCTAAGGG 59.490 45.833 5.20 0.00 38.88 3.95
1751 3326 8.780616 TGGGAAATCAATCCATACATATGTTT 57.219 30.769 14.77 2.88 41.55 2.83
1753 3328 8.961293 ATTGGGAAATCAATCCATACATATGT 57.039 30.769 13.93 13.93 41.55 2.29
1788 3363 7.173218 CACGATCAAATTGCTACCCTATTACAT 59.827 37.037 0.00 0.00 0.00 2.29
1825 3400 5.763698 AGATATTGTAATGACCTCGTCGAGA 59.236 40.000 23.74 4.09 34.95 4.04
1829 3404 5.221461 ACCCAGATATTGTAATGACCTCGTC 60.221 44.000 0.00 0.00 0.00 4.20
1835 3410 8.148351 TGTAGCTAACCCAGATATTGTAATGAC 58.852 37.037 0.00 0.00 0.00 3.06
1840 3435 7.509318 AGTGATGTAGCTAACCCAGATATTGTA 59.491 37.037 0.00 0.00 0.00 2.41
1888 3483 3.193691 TGGTGTTTCTGCCGAAAGAAAAA 59.806 39.130 12.30 6.38 45.30 1.94
1971 3567 1.542492 ACTACTGTGTGGGTAGACCG 58.458 55.000 7.71 0.00 44.64 4.79
1972 3568 2.631545 ACAACTACTGTGTGGGTAGACC 59.368 50.000 7.71 0.00 38.99 3.85
1988 3584 3.102052 CAAGGCTGCAATTCAACAACT 57.898 42.857 0.50 0.00 0.00 3.16
2007 3603 3.603532 GCTGATGCATTAGCTATAGGCA 58.396 45.455 30.33 14.39 42.74 4.75
2034 3630 2.492088 GTGGTACTTCCCTTGGCAAATC 59.508 50.000 0.00 0.00 34.77 2.17
2063 3659 3.066064 CCACGAAACAATGTCTTTGGTCA 59.934 43.478 0.00 0.00 39.80 4.02
2082 3679 3.317150 GCAGTTAGCAAAATCCAACCAC 58.683 45.455 0.00 0.00 44.79 4.16
2121 3718 9.131791 AGTACACCAAGAAAAACTAATGTCATT 57.868 29.630 3.06 3.06 0.00 2.57
2127 3724 6.657966 GCCCTAGTACACCAAGAAAAACTAAT 59.342 38.462 0.00 0.00 0.00 1.73
2129 3726 5.072058 TGCCCTAGTACACCAAGAAAAACTA 59.928 40.000 0.00 0.00 0.00 2.24
2169 3766 5.116180 CCTTGACAACAACTACACAGAGAA 58.884 41.667 0.00 0.00 32.27 2.87
2170 3767 4.161565 ACCTTGACAACAACTACACAGAGA 59.838 41.667 0.00 0.00 32.27 3.10
2207 3804 5.423015 TGGCTAGATCAAACTCTTCATCAC 58.577 41.667 0.00 0.00 0.00 3.06
2214 3811 7.530426 AAAAACAATGGCTAGATCAAACTCT 57.470 32.000 0.00 0.00 0.00 3.24
2243 3840 4.574674 ATGGAAGACAAACTATGGCAGA 57.425 40.909 0.00 0.00 40.75 4.26
2259 3856 4.882427 TCGTTGGTTCTTACAACAATGGAA 59.118 37.500 8.73 0.00 46.41 3.53
2260 3857 4.273969 GTCGTTGGTTCTTACAACAATGGA 59.726 41.667 8.73 0.00 46.41 3.41
2261 3858 4.274950 AGTCGTTGGTTCTTACAACAATGG 59.725 41.667 8.73 0.00 46.41 3.16
2262 3859 5.418310 AGTCGTTGGTTCTTACAACAATG 57.582 39.130 8.73 0.00 46.41 2.82
2263 3860 7.442969 TCAATAGTCGTTGGTTCTTACAACAAT 59.557 33.333 8.73 0.00 46.41 2.71
2264 3861 6.762187 TCAATAGTCGTTGGTTCTTACAACAA 59.238 34.615 8.73 0.00 46.41 2.83
2265 3862 6.282167 TCAATAGTCGTTGGTTCTTACAACA 58.718 36.000 8.73 0.00 46.41 3.33
2266 3863 6.617953 GCTCAATAGTCGTTGGTTCTTACAAC 60.618 42.308 0.00 0.00 43.52 3.32
2267 3864 5.407387 GCTCAATAGTCGTTGGTTCTTACAA 59.593 40.000 0.00 0.00 0.00 2.41
2268 3865 4.927425 GCTCAATAGTCGTTGGTTCTTACA 59.073 41.667 0.00 0.00 0.00 2.41
2269 3866 5.169295 AGCTCAATAGTCGTTGGTTCTTAC 58.831 41.667 0.00 0.00 0.00 2.34
2270 3867 5.401531 AGCTCAATAGTCGTTGGTTCTTA 57.598 39.130 0.00 0.00 0.00 2.10
2271 3868 4.273148 AGCTCAATAGTCGTTGGTTCTT 57.727 40.909 0.00 0.00 0.00 2.52
2272 3869 3.963428 AGCTCAATAGTCGTTGGTTCT 57.037 42.857 0.00 0.00 0.00 3.01
2273 3870 3.746492 ACAAGCTCAATAGTCGTTGGTTC 59.254 43.478 0.00 0.00 0.00 3.62
2274 3871 3.740115 ACAAGCTCAATAGTCGTTGGTT 58.260 40.909 0.00 0.00 0.00 3.67
2275 3872 3.402628 ACAAGCTCAATAGTCGTTGGT 57.597 42.857 0.00 0.00 0.00 3.67
2276 3873 3.745975 TCAACAAGCTCAATAGTCGTTGG 59.254 43.478 0.00 0.00 34.48 3.77
2277 3874 4.990543 TCAACAAGCTCAATAGTCGTTG 57.009 40.909 0.00 0.00 34.90 4.10
2278 3875 4.213482 GGTTCAACAAGCTCAATAGTCGTT 59.787 41.667 0.00 0.00 0.00 3.85
2279 3876 3.746492 GGTTCAACAAGCTCAATAGTCGT 59.254 43.478 0.00 0.00 0.00 4.34
2280 3877 3.997021 AGGTTCAACAAGCTCAATAGTCG 59.003 43.478 0.00 0.00 35.29 4.18
2281 3878 5.948992 AAGGTTCAACAAGCTCAATAGTC 57.051 39.130 0.00 0.00 39.53 2.59
2282 3879 5.827797 TGAAAGGTTCAACAAGCTCAATAGT 59.172 36.000 0.00 0.00 39.53 2.12
2283 3880 6.317789 TGAAAGGTTCAACAAGCTCAATAG 57.682 37.500 0.00 0.00 39.53 1.73
2284 3881 6.489700 TCATGAAAGGTTCAACAAGCTCAATA 59.510 34.615 0.00 0.00 43.95 1.90
2285 3882 5.302568 TCATGAAAGGTTCAACAAGCTCAAT 59.697 36.000 0.00 0.00 43.95 2.57
2286 3883 4.644234 TCATGAAAGGTTCAACAAGCTCAA 59.356 37.500 0.00 0.00 43.95 3.02
2287 3884 4.206375 TCATGAAAGGTTCAACAAGCTCA 58.794 39.130 0.00 0.00 43.95 4.26
2288 3885 4.836125 TCATGAAAGGTTCAACAAGCTC 57.164 40.909 0.00 0.00 43.95 4.09
2289 3886 6.491403 ACTTATCATGAAAGGTTCAACAAGCT 59.509 34.615 16.73 0.00 43.95 3.74
2290 3887 6.681777 ACTTATCATGAAAGGTTCAACAAGC 58.318 36.000 16.73 0.00 43.95 4.01
2334 3931 9.244292 AGTGACTATGTCAGATTAGTACTGAAA 57.756 33.333 5.39 0.00 43.57 2.69
2335 3932 8.809468 AGTGACTATGTCAGATTAGTACTGAA 57.191 34.615 5.39 0.00 43.57 3.02
2336 3933 9.549078 CTAGTGACTATGTCAGATTAGTACTGA 57.451 37.037 5.39 0.00 43.57 3.41
2337 3934 9.332502 ACTAGTGACTATGTCAGATTAGTACTG 57.667 37.037 5.39 0.00 43.57 2.74
2345 3942 9.244292 TGTTTTCTACTAGTGACTATGTCAGAT 57.756 33.333 5.39 0.00 43.57 2.90
2346 3943 8.631480 TGTTTTCTACTAGTGACTATGTCAGA 57.369 34.615 5.39 0.00 43.57 3.27
2347 3944 7.971168 CCTGTTTTCTACTAGTGACTATGTCAG 59.029 40.741 5.39 5.01 43.57 3.51
2348 3945 7.093902 CCCTGTTTTCTACTAGTGACTATGTCA 60.094 40.741 5.39 0.00 40.50 3.58
2349 3946 7.259161 CCCTGTTTTCTACTAGTGACTATGTC 58.741 42.308 5.39 0.00 0.00 3.06
2350 3947 6.351117 GCCCTGTTTTCTACTAGTGACTATGT 60.351 42.308 5.39 0.00 0.00 2.29
2351 3948 6.043411 GCCCTGTTTTCTACTAGTGACTATG 58.957 44.000 5.39 0.00 0.00 2.23
2352 3949 5.958987 AGCCCTGTTTTCTACTAGTGACTAT 59.041 40.000 5.39 0.00 0.00 2.12
2353 3950 5.331069 AGCCCTGTTTTCTACTAGTGACTA 58.669 41.667 5.39 0.00 0.00 2.59
2354 3951 4.161102 AGCCCTGTTTTCTACTAGTGACT 58.839 43.478 5.39 0.00 0.00 3.41
2355 3952 4.538746 AGCCCTGTTTTCTACTAGTGAC 57.461 45.455 5.39 0.00 0.00 3.67
2356 3953 5.305585 CAAAGCCCTGTTTTCTACTAGTGA 58.694 41.667 5.39 0.00 0.00 3.41
2357 3954 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
2358 3955 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
2359 3956 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
2360 3957 4.103469 TGACCAAAGCCCTGTTTTCTACTA 59.897 41.667 0.00 0.00 0.00 1.82
2361 3958 3.117663 TGACCAAAGCCCTGTTTTCTACT 60.118 43.478 0.00 0.00 0.00 2.57
2362 3959 3.004419 GTGACCAAAGCCCTGTTTTCTAC 59.996 47.826 0.00 0.00 0.00 2.59
2363 3960 3.219281 GTGACCAAAGCCCTGTTTTCTA 58.781 45.455 0.00 0.00 0.00 2.10
2364 3961 2.031870 GTGACCAAAGCCCTGTTTTCT 58.968 47.619 0.00 0.00 0.00 2.52
2365 3962 1.754226 TGTGACCAAAGCCCTGTTTTC 59.246 47.619 0.00 0.00 0.00 2.29
2366 3963 1.756538 CTGTGACCAAAGCCCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
2367 3964 1.402787 CTGTGACCAAAGCCCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
2368 3965 0.468029 CCTGTGACCAAAGCCCTGTT 60.468 55.000 0.00 0.00 0.00 3.16
2369 3966 1.151450 CCTGTGACCAAAGCCCTGT 59.849 57.895 0.00 0.00 0.00 4.00
2370 3967 1.604593 CCCTGTGACCAAAGCCCTG 60.605 63.158 0.00 0.00 0.00 4.45
2371 3968 2.846532 CCCTGTGACCAAAGCCCT 59.153 61.111 0.00 0.00 0.00 5.19
2372 3969 2.991540 GCCCTGTGACCAAAGCCC 60.992 66.667 0.00 0.00 0.00 5.19
2373 3970 1.832167 TTGCCCTGTGACCAAAGCC 60.832 57.895 0.00 0.00 0.00 4.35
2374 3971 1.363807 GTTGCCCTGTGACCAAAGC 59.636 57.895 0.00 0.00 0.00 3.51
2375 3972 1.331214 ATGTTGCCCTGTGACCAAAG 58.669 50.000 0.00 0.00 0.00 2.77
2376 3973 1.686052 GAATGTTGCCCTGTGACCAAA 59.314 47.619 0.00 0.00 0.00 3.28
2377 3974 1.327303 GAATGTTGCCCTGTGACCAA 58.673 50.000 0.00 0.00 0.00 3.67
2378 3975 0.184692 TGAATGTTGCCCTGTGACCA 59.815 50.000 0.00 0.00 0.00 4.02
2379 3976 0.598065 GTGAATGTTGCCCTGTGACC 59.402 55.000 0.00 0.00 0.00 4.02
2380 3977 1.317613 TGTGAATGTTGCCCTGTGAC 58.682 50.000 0.00 0.00 0.00 3.67
2381 3978 2.291209 ATGTGAATGTTGCCCTGTGA 57.709 45.000 0.00 0.00 0.00 3.58
2382 3979 3.507233 ACTAATGTGAATGTTGCCCTGTG 59.493 43.478 0.00 0.00 0.00 3.66
2383 3980 3.758554 GACTAATGTGAATGTTGCCCTGT 59.241 43.478 0.00 0.00 0.00 4.00
2384 3981 3.129287 GGACTAATGTGAATGTTGCCCTG 59.871 47.826 0.00 0.00 0.00 4.45
2385 3982 3.356290 GGACTAATGTGAATGTTGCCCT 58.644 45.455 0.00 0.00 0.00 5.19
2386 3983 2.427095 GGGACTAATGTGAATGTTGCCC 59.573 50.000 0.00 0.00 0.00 5.36
2387 3984 2.097466 CGGGACTAATGTGAATGTTGCC 59.903 50.000 0.00 0.00 0.00 4.52
2388 3985 2.097466 CCGGGACTAATGTGAATGTTGC 59.903 50.000 0.00 0.00 0.00 4.17
2389 3986 3.343617 ACCGGGACTAATGTGAATGTTG 58.656 45.455 6.32 0.00 0.00 3.33
2390 3987 3.713826 ACCGGGACTAATGTGAATGTT 57.286 42.857 6.32 0.00 0.00 2.71
2391 3988 3.008594 TGAACCGGGACTAATGTGAATGT 59.991 43.478 6.32 0.00 0.00 2.71
2392 3989 3.605634 TGAACCGGGACTAATGTGAATG 58.394 45.455 6.32 0.00 0.00 2.67
2393 3990 3.263425 ACTGAACCGGGACTAATGTGAAT 59.737 43.478 6.32 0.00 0.00 2.57
2394 3991 2.635915 ACTGAACCGGGACTAATGTGAA 59.364 45.455 6.32 0.00 0.00 3.18
2395 3992 2.232941 GACTGAACCGGGACTAATGTGA 59.767 50.000 6.32 0.00 0.00 3.58
2396 3993 2.028476 TGACTGAACCGGGACTAATGTG 60.028 50.000 6.32 0.00 0.00 3.21
2397 3994 2.028385 GTGACTGAACCGGGACTAATGT 60.028 50.000 6.32 0.00 0.00 2.71
2398 3995 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
2399 3996 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
2400 3997 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
2401 3998 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
2402 3999 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
2403 4000 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
2404 4001 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
2405 4002 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
2409 4006 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
2410 4007 1.111116 AGTCCCGGTTCGTGACTGAA 61.111 55.000 9.22 0.00 42.28 3.02
2411 4008 0.250858 TAGTCCCGGTTCGTGACTGA 60.251 55.000 17.52 2.93 43.49 3.41
2412 4009 0.599558 TTAGTCCCGGTTCGTGACTG 59.400 55.000 17.52 0.00 43.49 3.51
2413 4010 1.203994 CATTAGTCCCGGTTCGTGACT 59.796 52.381 13.76 13.76 45.32 3.41
2414 4011 1.067354 ACATTAGTCCCGGTTCGTGAC 60.067 52.381 0.00 0.00 34.71 3.67
2415 4012 1.067425 CACATTAGTCCCGGTTCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
2416 4013 1.067425 TCACATTAGTCCCGGTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
2417 4014 1.203994 CTCACATTAGTCCCGGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
2418 4015 1.922570 CTCACATTAGTCCCGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
2419 4016 1.066430 TGCTCACATTAGTCCCGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
2420 4017 0.981183 TGCTCACATTAGTCCCGGTT 59.019 50.000 0.00 0.00 0.00 4.44
2421 4018 1.204146 ATGCTCACATTAGTCCCGGT 58.796 50.000 0.00 0.00 30.07 5.28
2422 4019 2.332063 AATGCTCACATTAGTCCCGG 57.668 50.000 0.00 0.00 44.78 5.73
2423 4020 3.009723 ACAAATGCTCACATTAGTCCCG 58.990 45.455 0.00 0.00 45.90 5.14
2424 4021 3.378427 GGACAAATGCTCACATTAGTCCC 59.622 47.826 0.00 0.00 45.90 4.46
2425 4022 3.378427 GGGACAAATGCTCACATTAGTCC 59.622 47.826 0.00 0.00 45.90 3.85
2426 4023 3.063997 CGGGACAAATGCTCACATTAGTC 59.936 47.826 0.00 0.00 45.90 2.59
2427 4024 3.009723 CGGGACAAATGCTCACATTAGT 58.990 45.455 0.00 0.00 45.90 2.24
2428 4025 2.355756 CCGGGACAAATGCTCACATTAG 59.644 50.000 0.00 0.00 45.90 1.73
2429 4026 2.290641 ACCGGGACAAATGCTCACATTA 60.291 45.455 6.32 0.00 45.90 1.90
2431 4028 0.038166 ACCGGGACAAATGCTCACAT 59.962 50.000 6.32 0.00 38.49 3.21
2432 4029 0.179004 AACCGGGACAAATGCTCACA 60.179 50.000 6.32 0.00 0.00 3.58
2433 4030 0.521735 GAACCGGGACAAATGCTCAC 59.478 55.000 6.32 0.00 0.00 3.51
2434 4031 0.953471 CGAACCGGGACAAATGCTCA 60.953 55.000 6.32 0.00 0.00 4.26
2435 4032 0.953960 ACGAACCGGGACAAATGCTC 60.954 55.000 6.32 0.00 0.00 4.26
2436 4033 1.072505 ACGAACCGGGACAAATGCT 59.927 52.632 6.32 0.00 0.00 3.79
2437 4034 1.209127 CACGAACCGGGACAAATGC 59.791 57.895 6.32 0.00 28.17 3.56
2438 4035 0.796312 CTCACGAACCGGGACAAATG 59.204 55.000 6.32 0.00 32.99 2.32
2439 4036 0.321298 CCTCACGAACCGGGACAAAT 60.321 55.000 6.32 0.00 32.99 2.32
2440 4037 1.070105 CCTCACGAACCGGGACAAA 59.930 57.895 6.32 0.00 32.99 2.83
2441 4038 2.091102 GACCTCACGAACCGGGACAA 62.091 60.000 6.32 0.00 32.99 3.18
2442 4039 2.522436 ACCTCACGAACCGGGACA 60.522 61.111 6.32 0.00 32.99 4.02
2443 4040 2.260743 GACCTCACGAACCGGGAC 59.739 66.667 6.32 0.00 32.99 4.46
2444 4041 2.203523 TGACCTCACGAACCGGGA 60.204 61.111 6.32 0.00 36.75 5.14
2445 4042 2.261671 CTGACCTCACGAACCGGG 59.738 66.667 6.32 0.00 0.00 5.73
2446 4043 2.261671 CCTGACCTCACGAACCGG 59.738 66.667 0.00 0.00 0.00 5.28
2447 4044 2.261671 CCCTGACCTCACGAACCG 59.738 66.667 0.00 0.00 0.00 4.44
2448 4045 2.663196 CCCCTGACCTCACGAACC 59.337 66.667 0.00 0.00 0.00 3.62
2449 4046 2.047179 GCCCCTGACCTCACGAAC 60.047 66.667 0.00 0.00 0.00 3.95
2450 4047 3.319198 GGCCCCTGACCTCACGAA 61.319 66.667 0.00 0.00 0.00 3.85
2451 4048 4.316823 AGGCCCCTGACCTCACGA 62.317 66.667 0.00 0.00 28.76 4.35
2452 4049 4.087892 CAGGCCCCTGACCTCACG 62.088 72.222 8.67 0.00 46.30 4.35
2453 4050 4.416738 GCAGGCCCCTGACCTCAC 62.417 72.222 18.20 0.00 46.30 3.51
2475 4072 3.995506 GACCAATGCCCCCACGAGG 62.996 68.421 0.00 0.00 0.00 4.63
2476 4073 2.438434 GACCAATGCCCCCACGAG 60.438 66.667 0.00 0.00 0.00 4.18
2477 4074 4.041762 GGACCAATGCCCCCACGA 62.042 66.667 0.00 0.00 0.00 4.35
2482 4079 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
2483 4080 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
2484 4081 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
2485 4082 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
2486 4083 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
2487 4084 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
2488 4085 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
2489 4086 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
2490 4087 4.754667 GCCAGACGAACCGGGACC 62.755 72.222 6.32 0.00 0.00 4.46
2491 4088 4.754667 GGCCAGACGAACCGGGAC 62.755 72.222 6.32 0.00 0.00 4.46
2495 4092 3.546714 AAAGGGGCCAGACGAACCG 62.547 63.158 4.39 0.00 0.00 4.44
2496 4093 1.971695 CAAAGGGGCCAGACGAACC 60.972 63.158 4.39 0.00 0.00 3.62
2497 4094 0.322546 ATCAAAGGGGCCAGACGAAC 60.323 55.000 4.39 0.00 0.00 3.95
2498 4095 0.035439 GATCAAAGGGGCCAGACGAA 60.035 55.000 4.39 0.00 0.00 3.85
2499 4096 1.602237 GATCAAAGGGGCCAGACGA 59.398 57.895 4.39 0.00 0.00 4.20
2500 4097 1.452108 GGATCAAAGGGGCCAGACG 60.452 63.158 4.39 0.00 0.00 4.18
2501 4098 1.076705 GGGATCAAAGGGGCCAGAC 60.077 63.158 4.39 0.00 0.00 3.51
2502 4099 2.679342 CGGGATCAAAGGGGCCAGA 61.679 63.158 4.39 0.00 0.00 3.86
2503 4100 2.124151 CGGGATCAAAGGGGCCAG 60.124 66.667 4.39 0.00 0.00 4.85
2504 4101 3.738481 CCGGGATCAAAGGGGCCA 61.738 66.667 4.39 0.00 0.00 5.36
2505 4102 3.296842 AACCGGGATCAAAGGGGCC 62.297 63.158 6.32 0.00 0.00 5.80
2506 4103 2.052104 CAACCGGGATCAAAGGGGC 61.052 63.158 6.32 0.00 0.00 5.80
2507 4104 1.379843 CCAACCGGGATCAAAGGGG 60.380 63.158 6.32 0.00 40.01 4.79
2508 4105 0.965363 CACCAACCGGGATCAAAGGG 60.965 60.000 6.32 0.00 41.15 3.95
2509 4106 0.965363 CCACCAACCGGGATCAAAGG 60.965 60.000 6.32 0.00 41.15 3.11
2510 4107 2.566824 CCACCAACCGGGATCAAAG 58.433 57.895 6.32 0.00 41.15 2.77
2511 4108 4.832741 CCACCAACCGGGATCAAA 57.167 55.556 6.32 0.00 41.15 2.69
2517 4114 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
2518 4115 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
2519 4116 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
2520 4117 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
2521 4118 2.667199 CCGGTTCGTCCCACCAAC 60.667 66.667 0.00 0.00 33.36 3.77
2522 4119 3.943691 CCCGGTTCGTCCCACCAA 61.944 66.667 0.00 0.00 33.36 3.67
2523 4120 4.938074 TCCCGGTTCGTCCCACCA 62.938 66.667 0.00 0.00 33.36 4.17
2524 4121 4.383861 GTCCCGGTTCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
2525 4122 4.383861 GGTCCCGGTTCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
2526 4123 4.938074 TGGTCCCGGTTCGTCCCA 62.938 66.667 0.00 0.00 0.00 4.37
2527 4124 2.963101 ATTGGTCCCGGTTCGTCCC 61.963 63.158 0.00 0.00 0.00 4.46
2528 4125 1.743995 CATTGGTCCCGGTTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
2529 4126 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
2530 4127 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
2531 4128 1.743995 GACCATTGGTCCCGGTTCG 60.744 63.158 23.00 0.00 46.19 3.95
2532 4129 4.313819 GACCATTGGTCCCGGTTC 57.686 61.111 23.00 0.00 46.19 3.62
2540 4137 1.613630 AGGAGCGAGGACCATTGGT 60.614 57.895 8.42 8.42 39.44 3.67
2541 4138 1.153289 CAGGAGCGAGGACCATTGG 60.153 63.158 0.00 0.00 0.00 3.16
2542 4139 1.153289 CCAGGAGCGAGGACCATTG 60.153 63.158 0.00 0.00 0.00 2.82
2543 4140 3.036429 GCCAGGAGCGAGGACCATT 62.036 63.158 0.00 0.00 0.00 3.16
2544 4141 3.474570 GCCAGGAGCGAGGACCAT 61.475 66.667 0.00 0.00 0.00 3.55
2566 4163 1.976474 CCAACCGGGACCAATGGTG 60.976 63.158 10.84 0.00 40.01 4.17
2567 4164 1.135068 TACCAACCGGGACCAATGGT 61.135 55.000 3.74 3.74 45.81 3.55
2568 4165 0.393808 CTACCAACCGGGACCAATGG 60.394 60.000 6.32 0.00 41.15 3.16
2569 4166 1.029947 GCTACCAACCGGGACCAATG 61.030 60.000 6.32 0.00 41.15 2.82
2570 4167 1.205460 AGCTACCAACCGGGACCAAT 61.205 55.000 6.32 0.00 41.15 3.16
2571 4168 1.420532 AAGCTACCAACCGGGACCAA 61.421 55.000 6.32 0.00 41.15 3.67
2572 4169 1.844289 AAGCTACCAACCGGGACCA 60.844 57.895 6.32 0.00 41.15 4.02
2573 4170 1.376812 CAAGCTACCAACCGGGACC 60.377 63.158 6.32 0.00 41.15 4.46
2574 4171 0.035739 TTCAAGCTACCAACCGGGAC 59.964 55.000 6.32 0.00 41.15 4.46
2575 4172 0.035739 GTTCAAGCTACCAACCGGGA 59.964 55.000 6.32 0.00 41.15 5.14
2576 4173 0.958876 GGTTCAAGCTACCAACCGGG 60.959 60.000 6.32 0.00 44.81 5.73
2577 4174 2.551644 GGTTCAAGCTACCAACCGG 58.448 57.895 0.00 0.00 35.67 5.28
2579 4176 0.958876 CCCGGTTCAAGCTACCAACC 60.959 60.000 0.00 7.90 36.91 3.77
2580 4177 0.035739 TCCCGGTTCAAGCTACCAAC 59.964 55.000 0.00 0.00 35.31 3.77
2581 4178 0.035739 GTCCCGGTTCAAGCTACCAA 59.964 55.000 0.00 0.00 35.31 3.67
2582 4179 1.675219 GTCCCGGTTCAAGCTACCA 59.325 57.895 0.00 0.00 35.31 3.25
2583 4180 1.078637 GGTCCCGGTTCAAGCTACC 60.079 63.158 0.00 0.00 0.00 3.18
2584 4181 0.391263 CTGGTCCCGGTTCAAGCTAC 60.391 60.000 0.00 0.00 0.00 3.58
2585 4182 0.543410 TCTGGTCCCGGTTCAAGCTA 60.543 55.000 0.00 0.00 0.00 3.32
2586 4183 1.831652 CTCTGGTCCCGGTTCAAGCT 61.832 60.000 0.00 0.00 0.00 3.74
2587 4184 1.376037 CTCTGGTCCCGGTTCAAGC 60.376 63.158 0.00 0.00 0.00 4.01
2588 4185 1.296715 CCTCTGGTCCCGGTTCAAG 59.703 63.158 0.00 0.00 0.00 3.02
2589 4186 2.890766 GCCTCTGGTCCCGGTTCAA 61.891 63.158 0.00 0.00 0.00 2.69
2590 4187 3.319198 GCCTCTGGTCCCGGTTCA 61.319 66.667 0.00 0.00 0.00 3.18
2591 4188 3.003763 AGCCTCTGGTCCCGGTTC 61.004 66.667 0.00 0.00 0.00 3.62
2592 4189 3.003763 GAGCCTCTGGTCCCGGTT 61.004 66.667 0.00 0.00 32.76 4.44
2593 4190 4.316823 TGAGCCTCTGGTCCCGGT 62.317 66.667 0.00 0.00 38.24 5.28
2594 4191 3.775654 GTGAGCCTCTGGTCCCGG 61.776 72.222 0.00 0.00 38.24 5.73
2595 4192 3.775654 GGTGAGCCTCTGGTCCCG 61.776 72.222 0.00 0.00 38.24 5.14
2596 4193 3.403558 GGGTGAGCCTCTGGTCCC 61.404 72.222 0.00 0.00 38.24 4.46
2597 4194 1.492993 AAAGGGTGAGCCTCTGGTCC 61.493 60.000 2.56 0.00 38.24 4.46
2598 4195 1.208293 CTAAAGGGTGAGCCTCTGGTC 59.792 57.143 2.56 0.00 39.48 4.02
2599 4196 1.280457 CTAAAGGGTGAGCCTCTGGT 58.720 55.000 2.56 0.00 34.45 4.00
2600 4197 1.208293 GACTAAAGGGTGAGCCTCTGG 59.792 57.143 2.56 0.00 34.45 3.86
2601 4198 2.682155 GACTAAAGGGTGAGCCTCTG 57.318 55.000 2.56 0.00 34.45 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.