Multiple sequence alignment - TraesCS1D01G015700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G015700 chr1D 100.000 3308 0 0 1 3308 7343063 7339756 0.000000e+00 6109.0
1 TraesCS1D01G015700 chr1D 85.851 1675 164 32 476 2106 7768155 7769800 0.000000e+00 1712.0
2 TraesCS1D01G015700 chr1D 83.179 1950 221 59 124 2014 7714839 7716740 0.000000e+00 1685.0
3 TraesCS1D01G015700 chr1D 89.730 370 25 6 1 369 7767733 7768090 8.360000e-126 460.0
4 TraesCS1D01G015700 chr1D 86.260 393 49 4 2102 2493 7770021 7770409 3.950000e-114 422.0
5 TraesCS1D01G015700 chr1D 79.891 368 66 7 2109 2473 7717018 7717380 2.530000e-66 263.0
6 TraesCS1D01G015700 chr1D 91.720 157 11 1 2 158 7714686 7714840 2.000000e-52 217.0
7 TraesCS1D01G015700 chr1A 84.250 1327 154 31 802 2106 9203332 9204625 0.000000e+00 1242.0
8 TraesCS1D01G015700 chr1A 79.552 1071 137 39 863 1878 9221799 9220756 0.000000e+00 689.0
9 TraesCS1D01G015700 chr1A 86.857 525 37 8 273 773 9202818 9203334 2.880000e-155 558.0
10 TraesCS1D01G015700 chr1A 86.005 393 50 4 2102 2493 9204846 9205234 1.840000e-112 416.0
11 TraesCS1D01G015700 chr1A 81.915 376 61 7 2112 2484 9222825 9223196 8.910000e-81 311.0
12 TraesCS1D01G015700 chr1A 86.611 239 23 4 273 506 9175424 9175658 4.240000e-64 255.0
13 TraesCS1D01G015700 chr1A 79.487 429 35 20 438 832 9222278 9221869 4.240000e-64 255.0
14 TraesCS1D01G015700 chr1A 78.643 398 56 18 118 500 9200891 9201274 1.530000e-58 237.0
15 TraesCS1D01G015700 chr1A 77.112 367 69 10 129 482 9223943 9224307 7.240000e-47 198.0
16 TraesCS1D01G015700 chr1A 77.215 395 52 20 118 500 9173512 9173880 2.600000e-46 196.0
17 TraesCS1D01G015700 chr1A 94.444 54 3 0 1 54 9175293 9175346 2.120000e-12 84.2
18 TraesCS1D01G015700 chr1A 96.000 50 2 0 1 50 9202687 9202736 7.610000e-12 82.4
19 TraesCS1D01G015700 chr1B 84.688 849 101 17 1265 2106 9915363 9916189 0.000000e+00 821.0
20 TraesCS1D01G015700 chr1B 88.112 715 47 10 273 959 9934424 9935128 0.000000e+00 815.0
21 TraesCS1D01G015700 chr1B 80.838 1002 151 24 989 1971 9935122 9936101 0.000000e+00 749.0
22 TraesCS1D01G015700 chr1B 86.528 527 66 4 2526 3049 336788755 336788231 2.860000e-160 575.0
23 TraesCS1D01G015700 chr1B 86.486 370 46 3 2109 2478 9916384 9916749 1.430000e-108 403.0
24 TraesCS1D01G015700 chr1B 84.478 393 37 10 889 1268 9909955 9910336 1.880000e-97 366.0
25 TraesCS1D01G015700 chr1B 83.495 309 51 0 2110 2418 9936447 9936755 4.180000e-74 289.0
26 TraesCS1D01G015700 chr1B 77.112 367 66 10 132 481 9937204 9937569 2.600000e-46 196.0
27 TraesCS1D01G015700 chr1B 94.643 56 2 1 2 57 9934294 9934348 5.880000e-13 86.1
28 TraesCS1D01G015700 chr1B 85.185 81 12 0 2253 2333 9939312 9939392 2.120000e-12 84.2
29 TraesCS1D01G015700 chr6D 88.077 520 58 4 2526 3043 111956049 111956566 6.070000e-172 614.0
30 TraesCS1D01G015700 chr6D 88.846 260 29 0 3049 3308 346711417 346711158 1.480000e-83 320.0
31 TraesCS1D01G015700 chr6D 88.462 260 30 0 3049 3308 398731430 398731689 6.890000e-82 315.0
32 TraesCS1D01G015700 chr5A 87.097 527 62 6 2526 3049 17016232 17015709 2.840000e-165 592.0
33 TraesCS1D01G015700 chr5A 86.476 525 64 3 2526 3049 357809757 357809239 1.330000e-158 569.0
34 TraesCS1D01G015700 chr6B 87.160 514 63 3 2529 3041 525976325 525976836 6.150000e-162 580.0
35 TraesCS1D01G015700 chr4D 87.280 511 62 3 2526 3034 343563383 343563892 6.150000e-162 580.0
36 TraesCS1D01G015700 chr4D 86.692 526 66 4 2526 3049 499224695 499224172 6.150000e-162 580.0
37 TraesCS1D01G015700 chr4D 89.231 260 28 0 3049 3308 319274016 319273757 3.180000e-85 326.0
38 TraesCS1D01G015700 chr2D 86.807 523 65 4 2526 3046 619421456 619421976 6.150000e-162 580.0
39 TraesCS1D01G015700 chr2D 90.535 243 23 0 3052 3294 626658117 626657875 4.120000e-84 322.0
40 TraesCS1D01G015700 chr2A 86.705 519 66 3 2526 3043 518345122 518344606 1.030000e-159 573.0
41 TraesCS1D01G015700 chr3B 91.667 252 21 0 3057 3308 579456699 579456448 1.890000e-92 350.0
42 TraesCS1D01G015700 chr7D 90.476 252 24 0 3049 3300 617125599 617125348 1.900000e-87 333.0
43 TraesCS1D01G015700 chr4B 89.615 260 27 0 3049 3308 397006087 397005828 6.840000e-87 331.0
44 TraesCS1D01G015700 chr7B 88.846 260 28 1 3049 3308 436797416 436797158 5.330000e-83 318.0
45 TraesCS1D01G015700 chr6A 89.328 253 27 0 3056 3308 496797998 496798250 5.330000e-83 318.0
46 TraesCS1D01G015700 chrUn 86.364 242 24 4 276 512 318884074 318883837 4.240000e-64 255.0
47 TraesCS1D01G015700 chrUn 86.364 242 24 4 276 512 349769655 349769418 4.240000e-64 255.0
48 TraesCS1D01G015700 chrUn 77.461 386 49 20 127 500 278887701 278887342 2.600000e-46 196.0
49 TraesCS1D01G015700 chrUn 94.444 54 3 0 1 54 318884208 318884155 2.120000e-12 84.2
50 TraesCS1D01G015700 chrUn 94.444 54 3 0 1 54 349769789 349769736 2.120000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G015700 chr1D 7339756 7343063 3307 True 6109.000000 6109 100.000000 1 3308 1 chr1D.!!$R1 3307
1 TraesCS1D01G015700 chr1D 7767733 7770409 2676 False 864.666667 1712 87.280333 1 2493 3 chr1D.!!$F2 2492
2 TraesCS1D01G015700 chr1D 7714686 7717380 2694 False 721.666667 1685 84.930000 2 2473 3 chr1D.!!$F1 2471
3 TraesCS1D01G015700 chr1A 9200891 9205234 4343 False 507.080000 1242 86.351000 1 2493 5 chr1A.!!$F2 2492
4 TraesCS1D01G015700 chr1A 9220756 9222278 1522 True 472.000000 689 79.519500 438 1878 2 chr1A.!!$R1 1440
5 TraesCS1D01G015700 chr1A 9222825 9224307 1482 False 254.500000 311 79.513500 129 2484 2 chr1A.!!$F3 2355
6 TraesCS1D01G015700 chr1B 9915363 9916749 1386 False 612.000000 821 85.587000 1265 2478 2 chr1B.!!$F2 1213
7 TraesCS1D01G015700 chr1B 336788231 336788755 524 True 575.000000 575 86.528000 2526 3049 1 chr1B.!!$R1 523
8 TraesCS1D01G015700 chr1B 9934294 9939392 5098 False 369.883333 815 84.897500 2 2418 6 chr1B.!!$F3 2416
9 TraesCS1D01G015700 chr6D 111956049 111956566 517 False 614.000000 614 88.077000 2526 3043 1 chr6D.!!$F1 517
10 TraesCS1D01G015700 chr5A 17015709 17016232 523 True 592.000000 592 87.097000 2526 3049 1 chr5A.!!$R1 523
11 TraesCS1D01G015700 chr5A 357809239 357809757 518 True 569.000000 569 86.476000 2526 3049 1 chr5A.!!$R2 523
12 TraesCS1D01G015700 chr6B 525976325 525976836 511 False 580.000000 580 87.160000 2529 3041 1 chr6B.!!$F1 512
13 TraesCS1D01G015700 chr4D 343563383 343563892 509 False 580.000000 580 87.280000 2526 3034 1 chr4D.!!$F1 508
14 TraesCS1D01G015700 chr4D 499224172 499224695 523 True 580.000000 580 86.692000 2526 3049 1 chr4D.!!$R2 523
15 TraesCS1D01G015700 chr2D 619421456 619421976 520 False 580.000000 580 86.807000 2526 3046 1 chr2D.!!$F1 520
16 TraesCS1D01G015700 chr2A 518344606 518345122 516 True 573.000000 573 86.705000 2526 3043 1 chr2A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 2108 0.165944 GTCGACGGCTTGAAACATGG 59.834 55.0 0.0 0.0 0.0 3.66 F
1796 3811 0.035439 AACCGAATTGATCCTGGCGT 60.035 50.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 4124 0.037139 GCATGTTCTTGCCAATGCCA 60.037 50.0 0.00 0.0 36.60 4.92 R
2743 7324 0.188342 ATGGTGGCCTCTTTGGTGTT 59.812 50.0 3.32 0.0 38.35 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.298527 TGTCCCTGTAATCGTATCAGTAGTG 59.701 44.000 0.00 0.00 0.00 2.74
69 70 4.583489 CCCTGTAATCGTATCAGTAGTGGT 59.417 45.833 0.00 0.00 0.00 4.16
70 71 5.766670 CCCTGTAATCGTATCAGTAGTGGTA 59.233 44.000 0.00 0.00 0.00 3.25
239 277 1.823250 GCCCAACTCATTCCACCAGTT 60.823 52.381 0.00 0.00 0.00 3.16
241 279 3.877735 GCCCAACTCATTCCACCAGTTAT 60.878 47.826 0.00 0.00 0.00 1.89
259 297 6.294473 CAGTTATCAGGATGCCTTGATAAGT 58.706 40.000 8.55 9.02 37.53 2.24
272 310 0.302589 GATAAGTAAAACGGCCGGCG 59.697 55.000 31.76 18.34 0.00 6.46
299 2108 0.165944 GTCGACGGCTTGAAACATGG 59.834 55.000 0.00 0.00 0.00 3.66
392 2241 7.436430 AGCCACTCGTACCATATATATATCG 57.564 40.000 2.03 4.12 0.00 2.92
397 2246 8.504005 CACTCGTACCATATATATATCGCATCA 58.496 37.037 2.03 0.00 0.00 3.07
463 2313 6.657875 TCAAATTTGTCAGGTTTCCCAAAAT 58.342 32.000 17.47 0.00 31.30 1.82
534 2385 8.585471 TCCAAATTCTATCTCTTGAAAATGCT 57.415 30.769 0.00 0.00 0.00 3.79
567 2437 2.225963 GCATGCCAGATCAATCAGCTAC 59.774 50.000 6.36 0.00 31.87 3.58
574 2449 6.897413 TGCCAGATCAATCAGCTACCTATATA 59.103 38.462 0.00 0.00 31.87 0.86
575 2450 7.147828 TGCCAGATCAATCAGCTACCTATATAC 60.148 40.741 0.00 0.00 31.87 1.47
630 2505 6.166279 TGTTCTCTTGACGAAAGATGCTTAT 58.834 36.000 5.91 0.00 44.02 1.73
714 2598 9.683069 GACCAATAAATAATACCATCAAGCAAG 57.317 33.333 0.00 0.00 0.00 4.01
887 2819 4.585162 GTCTATAAGAGGAGCTACAAGGCA 59.415 45.833 0.00 0.00 34.17 4.75
931 2871 4.298103 AGTTCATTCATCTCTGCCACTT 57.702 40.909 0.00 0.00 0.00 3.16
949 2889 5.689961 GCCACTTTGTGTTTGTATTTAGGTG 59.310 40.000 0.00 0.00 0.00 4.00
950 2890 6.681865 GCCACTTTGTGTTTGTATTTAGGTGT 60.682 38.462 0.00 0.00 0.00 4.16
970 2910 4.276431 GTGTAGGTAGCTAGTCCACTCATC 59.724 50.000 0.86 0.00 0.00 2.92
971 2911 3.671740 AGGTAGCTAGTCCACTCATCA 57.328 47.619 0.00 0.00 0.00 3.07
972 2912 4.191804 AGGTAGCTAGTCCACTCATCAT 57.808 45.455 0.00 0.00 0.00 2.45
973 2913 4.551671 AGGTAGCTAGTCCACTCATCATT 58.448 43.478 0.00 0.00 0.00 2.57
974 2914 5.706447 AGGTAGCTAGTCCACTCATCATTA 58.294 41.667 0.00 0.00 0.00 1.90
1059 2999 1.691219 GGGCTGGTCCATGGAAGAA 59.309 57.895 18.20 3.93 36.21 2.52
1060 3000 0.394899 GGGCTGGTCCATGGAAGAAG 60.395 60.000 18.20 14.97 36.21 2.85
1061 3001 1.034292 GGCTGGTCCATGGAAGAAGC 61.034 60.000 25.83 25.83 34.01 3.86
1192 3162 5.052481 CCACACATGATACCTGTAGTGATG 58.948 45.833 0.00 0.00 32.36 3.07
1217 3190 1.004440 AGGTGTTCGAGGAAGCAGC 60.004 57.895 0.00 0.00 0.00 5.25
1223 3196 2.715532 TTCGAGGAAGCAGCGCAAGT 62.716 55.000 11.47 0.00 41.68 3.16
1232 3205 0.040157 GCAGCGCAAGTGTTCAATGA 60.040 50.000 11.47 0.00 41.68 2.57
1239 3212 4.641954 CGCAAGTGTTCAATGATGACTAC 58.358 43.478 0.00 0.00 34.61 2.73
1253 3229 8.781196 CAATGATGACTACTTTCTCATTATGGG 58.219 37.037 0.00 0.00 35.41 4.00
1299 3275 0.179045 GCCTGGTAGATGTTGGCGAT 60.179 55.000 0.00 0.00 33.96 4.58
1329 3305 2.034066 CCGGTGACTGTGGCCATT 59.966 61.111 9.72 0.00 0.00 3.16
1357 3336 2.120909 CACCATGGTCAATCCGGCC 61.121 63.158 16.53 0.00 39.52 6.13
1406 3397 0.459585 GCTGCCAACCAATGCATCAG 60.460 55.000 0.00 2.00 36.79 2.90
1417 3408 2.279120 GCATCAGGGACTCGAGCG 60.279 66.667 13.61 0.00 34.60 5.03
1455 3446 1.836802 ACACTAAGGTCTCCTCCGTC 58.163 55.000 0.00 0.00 30.89 4.79
1472 3463 4.717629 CTCAGACGTCGCCCGCAA 62.718 66.667 10.46 0.00 41.42 4.85
1481 3472 3.186047 CGCCCGCAAACTCTACCG 61.186 66.667 0.00 0.00 0.00 4.02
1582 3579 5.643348 CAGTTCATGCTTAGTTATGTGGACA 59.357 40.000 0.00 0.00 0.00 4.02
1583 3580 5.877012 AGTTCATGCTTAGTTATGTGGACAG 59.123 40.000 0.00 0.00 0.00 3.51
1585 3582 3.981071 TGCTTAGTTATGTGGACAGCT 57.019 42.857 0.00 0.00 0.00 4.24
1589 3586 4.677250 GCTTAGTTATGTGGACAGCTACGT 60.677 45.833 0.00 0.00 0.00 3.57
1592 3589 1.456296 TATGTGGACAGCTACGTCGT 58.544 50.000 2.21 2.21 36.73 4.34
1593 3590 0.170561 ATGTGGACAGCTACGTCGTC 59.829 55.000 0.00 0.00 36.73 4.20
1594 3591 1.167781 TGTGGACAGCTACGTCGTCA 61.168 55.000 0.00 0.00 36.73 4.35
1603 3600 1.001706 GCTACGTCGTCAGCATGGATA 60.002 52.381 16.75 0.00 37.73 2.59
1604 3601 2.351835 GCTACGTCGTCAGCATGGATAT 60.352 50.000 16.75 0.00 37.73 1.63
1608 3605 0.758123 TCGTCAGCATGGATATGGCA 59.242 50.000 0.00 0.00 36.16 4.92
1617 3614 2.715749 TGGATATGGCACTGAACAGG 57.284 50.000 6.76 0.00 0.00 4.00
1680 3677 0.250234 TGCTTGAGAACCAGATCCCG 59.750 55.000 0.00 0.00 0.00 5.14
1693 3690 3.204467 ATCCCGTGGGTGGTGGTTG 62.204 63.158 4.53 0.00 36.47 3.77
1705 3702 1.177401 GGTGGTTGAAGCCATCTTCC 58.823 55.000 2.98 0.00 46.28 3.46
1715 3712 1.005097 AGCCATCTTCCACTTCATGCA 59.995 47.619 0.00 0.00 0.00 3.96
1716 3713 2.029623 GCCATCTTCCACTTCATGCAT 58.970 47.619 0.00 0.00 0.00 3.96
1718 3715 3.552875 CCATCTTCCACTTCATGCATCT 58.447 45.455 0.00 0.00 0.00 2.90
1767 3770 1.515088 CGTCGCTGCGATGAGAAGT 60.515 57.895 33.92 0.00 44.49 3.01
1785 3788 2.316108 AGTGGCCTGAAAAACCGAATT 58.684 42.857 3.32 0.00 0.00 2.17
1793 3796 4.380867 CCTGAAAAACCGAATTGATCCTGG 60.381 45.833 0.00 0.00 0.00 4.45
1796 3811 0.035439 AACCGAATTGATCCTGGCGT 60.035 50.000 0.00 0.00 0.00 5.68
1802 3817 1.613317 ATTGATCCTGGCGTCGACCA 61.613 55.000 10.58 1.77 38.29 4.02
1804 3819 1.519455 GATCCTGGCGTCGACCAAG 60.519 63.158 10.58 5.75 39.86 3.61
1805 3820 2.907897 GATCCTGGCGTCGACCAAGG 62.908 65.000 17.13 17.13 39.86 3.61
2106 4124 3.580319 GTGCCACCCCTGTTCCCT 61.580 66.667 0.00 0.00 0.00 4.20
2107 4125 3.579302 TGCCACCCCTGTTCCCTG 61.579 66.667 0.00 0.00 0.00 4.45
2143 4401 1.080093 CGCCTCGGAAAGTGCTACA 60.080 57.895 0.00 0.00 0.00 2.74
2160 4418 8.060931 AGTGCTACATCGACATAATGATAGAT 57.939 34.615 0.00 0.00 0.00 1.98
2198 4456 1.152881 GGATGTCATGGGGGCTCAC 60.153 63.158 0.00 0.00 0.00 3.51
2199 4457 1.609239 GATGTCATGGGGGCTCACA 59.391 57.895 0.00 0.00 0.00 3.58
2202 4460 0.915872 TGTCATGGGGGCTCACATCT 60.916 55.000 0.00 0.00 0.00 2.90
2215 4473 4.187694 GCTCACATCTTACCTCTTCCTTG 58.812 47.826 0.00 0.00 0.00 3.61
2246 4504 1.427819 CTAAAATCGTGGCGGTGGC 59.572 57.895 0.00 0.00 38.90 5.01
2258 4516 2.800736 GGTGGCCACGATCATTGC 59.199 61.111 29.08 9.28 0.00 3.56
2268 4526 3.065786 CCACGATCATTGCTGCAGTTATT 59.934 43.478 16.64 0.00 0.00 1.40
2357 4615 6.615088 CATTAGCTTGCATGTTCTACTTGTT 58.385 36.000 0.00 0.00 0.00 2.83
2445 6032 0.642291 CTGTATCACGACAAGCTGCG 59.358 55.000 0.00 0.00 0.00 5.18
2447 6034 1.200484 TGTATCACGACAAGCTGCGTA 59.800 47.619 8.87 0.74 38.92 4.42
2475 6062 6.849305 GCAATCTGCATTAATTATTTGCAAGC 59.151 34.615 18.69 16.23 44.99 4.01
2476 6063 7.466185 GCAATCTGCATTAATTATTTGCAAGCA 60.466 33.333 18.69 1.46 44.99 3.91
2477 6064 8.391859 CAATCTGCATTAATTATTTGCAAGCAA 58.608 29.630 18.69 2.89 44.99 3.91
2478 6065 8.671384 ATCTGCATTAATTATTTGCAAGCAAT 57.329 26.923 18.69 0.34 44.99 3.56
2479 6066 8.495361 TCTGCATTAATTATTTGCAAGCAATT 57.505 26.923 18.69 18.60 44.99 2.32
2480 6067 8.391859 TCTGCATTAATTATTTGCAAGCAATTG 58.608 29.630 21.50 0.00 44.99 2.32
2481 6068 7.473366 TGCATTAATTATTTGCAAGCAATTGG 58.527 30.769 21.50 14.91 42.95 3.16
2482 6069 7.336176 TGCATTAATTATTTGCAAGCAATTGGA 59.664 29.630 21.50 14.22 42.95 3.53
2483 6070 8.347035 GCATTAATTATTTGCAAGCAATTGGAT 58.653 29.630 21.50 15.27 36.40 3.41
2510 6097 6.715344 ACATGAATTATTTGCAAGCAAGTG 57.285 33.333 12.29 4.35 37.24 3.16
2543 6133 0.987613 TATGGGGGAGAGCACATGCA 60.988 55.000 6.64 0.00 45.16 3.96
2555 6221 3.529533 AGCACATGCATGAAGACTACTC 58.470 45.455 32.75 10.39 45.16 2.59
2575 6241 2.360600 AAGTTTGCCCGCGCCATA 60.361 55.556 0.00 0.00 0.00 2.74
2639 6698 3.616317 GCAGGACACCAAAAAGTTGTTGT 60.616 43.478 5.07 0.00 42.49 3.32
2697 7098 3.558418 GGATCAATTGGTTGCATGCATTC 59.442 43.478 23.37 17.11 35.26 2.67
2725 7305 1.704641 AGAACTGCCCCAAAGGTTTC 58.295 50.000 0.00 0.00 38.26 2.78
2742 7323 3.312697 GGTTTCCGAGAATGTATCAAGGC 59.687 47.826 0.00 0.00 0.00 4.35
2743 7324 3.904800 TTCCGAGAATGTATCAAGGCA 57.095 42.857 0.00 0.00 0.00 4.75
2779 7360 1.945394 CCATCATACTGGAAGCAGTGC 59.055 52.381 7.13 7.13 38.69 4.40
2909 7490 3.350612 GCCGCCGTGCAACTACAA 61.351 61.111 0.00 0.00 31.75 2.41
2974 7853 5.698741 TGACATCTATTCTCATTGGGTGT 57.301 39.130 0.00 0.00 0.00 4.16
3046 7926 0.583438 CATCAATGTAGGAAGCGGCG 59.417 55.000 0.51 0.51 0.00 6.46
3049 7929 0.179111 CAATGTAGGAAGCGGCGAGA 60.179 55.000 12.98 0.00 0.00 4.04
3050 7930 0.753262 AATGTAGGAAGCGGCGAGAT 59.247 50.000 12.98 0.00 0.00 2.75
3054 7934 2.364324 TGTAGGAAGCGGCGAGATTATT 59.636 45.455 12.98 0.00 0.00 1.40
3055 7935 1.871080 AGGAAGCGGCGAGATTATTG 58.129 50.000 12.98 0.00 0.00 1.90
3056 7936 1.412710 AGGAAGCGGCGAGATTATTGA 59.587 47.619 12.98 0.00 0.00 2.57
3057 7937 1.795286 GGAAGCGGCGAGATTATTGAG 59.205 52.381 12.98 0.00 0.00 3.02
3060 7940 1.620819 AGCGGCGAGATTATTGAGGAT 59.379 47.619 12.98 0.00 0.00 3.24
3061 7941 1.728971 GCGGCGAGATTATTGAGGATG 59.271 52.381 12.98 0.00 0.00 3.51
3063 7943 3.249091 CGGCGAGATTATTGAGGATGAG 58.751 50.000 0.00 0.00 0.00 2.90
3064 7944 3.594134 GGCGAGATTATTGAGGATGAGG 58.406 50.000 0.00 0.00 0.00 3.86
3065 7945 3.594134 GCGAGATTATTGAGGATGAGGG 58.406 50.000 0.00 0.00 0.00 4.30
3067 7947 4.564041 CGAGATTATTGAGGATGAGGGTG 58.436 47.826 0.00 0.00 0.00 4.61
3072 7952 1.971149 TTGAGGATGAGGGTGATGGT 58.029 50.000 0.00 0.00 0.00 3.55
3073 7953 1.206878 TGAGGATGAGGGTGATGGTG 58.793 55.000 0.00 0.00 0.00 4.17
3074 7954 1.207791 GAGGATGAGGGTGATGGTGT 58.792 55.000 0.00 0.00 0.00 4.16
3077 7957 1.098050 GATGAGGGTGATGGTGTTGC 58.902 55.000 0.00 0.00 0.00 4.17
3079 7959 1.357137 TGAGGGTGATGGTGTTGCTA 58.643 50.000 0.00 0.00 0.00 3.49
3080 7960 1.702401 TGAGGGTGATGGTGTTGCTAA 59.298 47.619 0.00 0.00 0.00 3.09
3081 7961 2.107378 TGAGGGTGATGGTGTTGCTAAA 59.893 45.455 0.00 0.00 0.00 1.85
3082 7962 3.153919 GAGGGTGATGGTGTTGCTAAAA 58.846 45.455 0.00 0.00 0.00 1.52
3083 7963 2.890945 AGGGTGATGGTGTTGCTAAAAC 59.109 45.455 0.00 0.00 0.00 2.43
3084 7964 2.029380 GGGTGATGGTGTTGCTAAAACC 60.029 50.000 2.30 2.30 34.38 3.27
3088 7968 4.685628 GTGATGGTGTTGCTAAAACCAATG 59.314 41.667 12.93 0.00 46.59 2.82
3089 7969 4.586421 TGATGGTGTTGCTAAAACCAATGA 59.414 37.500 12.93 1.21 46.59 2.57
3090 7970 5.245751 TGATGGTGTTGCTAAAACCAATGAT 59.754 36.000 12.93 0.23 46.59 2.45
3092 7972 5.923204 TGGTGTTGCTAAAACCAATGATTT 58.077 33.333 8.07 0.00 40.97 2.17
3093 7973 6.352516 TGGTGTTGCTAAAACCAATGATTTT 58.647 32.000 8.07 0.00 40.97 1.82
3094 7974 6.259608 TGGTGTTGCTAAAACCAATGATTTTG 59.740 34.615 8.07 0.00 40.97 2.44
3095 7975 6.481644 GGTGTTGCTAAAACCAATGATTTTGA 59.518 34.615 0.00 0.00 33.94 2.69
3096 7976 7.011857 GGTGTTGCTAAAACCAATGATTTTGAA 59.988 33.333 0.00 0.00 33.94 2.69
3097 7977 8.063630 GTGTTGCTAAAACCAATGATTTTGAAG 58.936 33.333 0.00 0.00 31.79 3.02
3098 7978 6.783892 TGCTAAAACCAATGATTTTGAAGC 57.216 33.333 0.00 0.00 33.85 3.86
3099 7979 5.404968 TGCTAAAACCAATGATTTTGAAGCG 59.595 36.000 0.00 0.00 35.08 4.68
3101 7981 3.665745 AACCAATGATTTTGAAGCGCT 57.334 38.095 2.64 2.64 0.00 5.92
3102 7982 3.665745 ACCAATGATTTTGAAGCGCTT 57.334 38.095 25.35 25.35 0.00 4.68
3103 7983 3.319755 ACCAATGATTTTGAAGCGCTTG 58.680 40.909 30.47 9.59 0.00 4.01
3104 7984 2.669434 CCAATGATTTTGAAGCGCTTGG 59.331 45.455 30.47 15.48 0.00 3.61
3105 7985 3.577667 CAATGATTTTGAAGCGCTTGGA 58.422 40.909 30.47 12.96 0.00 3.53
3106 7986 2.995466 TGATTTTGAAGCGCTTGGAG 57.005 45.000 30.47 0.00 0.00 3.86
3107 7987 2.503331 TGATTTTGAAGCGCTTGGAGA 58.497 42.857 30.47 11.18 0.00 3.71
3108 7988 2.884012 TGATTTTGAAGCGCTTGGAGAA 59.116 40.909 30.47 15.16 0.00 2.87
3109 7989 2.774439 TTTTGAAGCGCTTGGAGAAC 57.226 45.000 30.47 12.61 0.00 3.01
3110 7990 1.674359 TTTGAAGCGCTTGGAGAACA 58.326 45.000 30.47 15.40 0.00 3.18
3111 7991 1.674359 TTGAAGCGCTTGGAGAACAA 58.326 45.000 30.47 20.57 37.55 2.83
3123 8003 4.177537 TGGAGAACAAGTTCAAATCCCA 57.822 40.909 14.69 10.09 41.84 4.37
3124 8004 4.144297 TGGAGAACAAGTTCAAATCCCAG 58.856 43.478 14.69 0.00 41.84 4.45
3125 8005 4.141274 TGGAGAACAAGTTCAAATCCCAGA 60.141 41.667 14.69 0.00 41.84 3.86
3126 8006 4.827284 GGAGAACAAGTTCAAATCCCAGAA 59.173 41.667 14.69 0.00 41.84 3.02
3127 8007 5.048434 GGAGAACAAGTTCAAATCCCAGAAG 60.048 44.000 14.69 0.00 41.84 2.85
3129 8009 6.310149 AGAACAAGTTCAAATCCCAGAAGAT 58.690 36.000 14.69 0.00 41.84 2.40
3130 8010 6.432472 AGAACAAGTTCAAATCCCAGAAGATC 59.568 38.462 14.69 0.00 41.84 2.75
3131 8011 5.634118 ACAAGTTCAAATCCCAGAAGATCA 58.366 37.500 0.00 0.00 0.00 2.92
3132 8012 6.070656 ACAAGTTCAAATCCCAGAAGATCAA 58.929 36.000 0.00 0.00 0.00 2.57
3133 8013 6.208204 ACAAGTTCAAATCCCAGAAGATCAAG 59.792 38.462 0.00 0.00 0.00 3.02
3134 8014 6.131972 AGTTCAAATCCCAGAAGATCAAGA 57.868 37.500 0.00 0.00 0.00 3.02
3135 8015 6.729428 AGTTCAAATCCCAGAAGATCAAGAT 58.271 36.000 0.00 0.00 0.00 2.40
3136 8016 6.602406 AGTTCAAATCCCAGAAGATCAAGATG 59.398 38.462 0.00 0.00 0.00 2.90
3137 8017 4.885907 TCAAATCCCAGAAGATCAAGATGC 59.114 41.667 0.00 0.00 0.00 3.91
3140 8020 4.305539 TCCCAGAAGATCAAGATGCAAA 57.694 40.909 0.00 0.00 0.00 3.68
3141 8021 4.863548 TCCCAGAAGATCAAGATGCAAAT 58.136 39.130 0.00 0.00 0.00 2.32
3143 8023 4.643334 CCCAGAAGATCAAGATGCAAATCA 59.357 41.667 0.00 0.00 0.00 2.57
3144 8024 5.221067 CCCAGAAGATCAAGATGCAAATCAG 60.221 44.000 0.00 0.00 0.00 2.90
3145 8025 5.274718 CAGAAGATCAAGATGCAAATCAGC 58.725 41.667 0.00 0.00 0.00 4.26
3146 8026 5.066634 CAGAAGATCAAGATGCAAATCAGCT 59.933 40.000 0.00 0.00 44.53 4.24
3155 8035 6.710597 AGATGCAAATCAGCTTATGAACAT 57.289 33.333 0.00 0.00 38.47 2.71
3157 8037 7.201145 AGATGCAAATCAGCTTATGAACATTC 58.799 34.615 0.00 0.00 38.47 2.67
3158 8038 6.519679 TGCAAATCAGCTTATGAACATTCT 57.480 33.333 0.00 0.00 42.53 2.40
3159 8039 6.327154 TGCAAATCAGCTTATGAACATTCTG 58.673 36.000 0.00 0.00 42.53 3.02
3160 8040 5.231568 GCAAATCAGCTTATGAACATTCTGC 59.768 40.000 0.00 0.00 42.53 4.26
3161 8041 6.327154 CAAATCAGCTTATGAACATTCTGCA 58.673 36.000 0.00 0.00 42.53 4.41
3162 8042 5.752892 ATCAGCTTATGAACATTCTGCAG 57.247 39.130 7.63 7.63 42.53 4.41
3164 8044 5.434408 TCAGCTTATGAACATTCTGCAGAT 58.566 37.500 19.04 1.31 34.02 2.90
3165 8045 5.296035 TCAGCTTATGAACATTCTGCAGATG 59.704 40.000 19.04 18.82 34.02 2.90
3166 8046 4.036498 AGCTTATGAACATTCTGCAGATGC 59.964 41.667 19.04 1.41 42.50 3.91
3179 8059 3.523142 GCAGATGCATCAGAATCTTCG 57.477 47.619 27.81 6.18 38.12 3.79
3180 8060 3.129109 GCAGATGCATCAGAATCTTCGA 58.871 45.455 27.81 0.00 38.12 3.71
3181 8061 3.184783 GCAGATGCATCAGAATCTTCGAG 59.815 47.826 27.81 4.63 38.12 4.04
3182 8062 4.618965 CAGATGCATCAGAATCTTCGAGA 58.381 43.478 27.81 0.00 38.12 4.04
3183 8063 5.231702 CAGATGCATCAGAATCTTCGAGAT 58.768 41.667 27.81 0.00 38.12 2.75
3184 8064 5.346551 CAGATGCATCAGAATCTTCGAGATC 59.653 44.000 27.81 0.00 38.12 2.75
3185 8065 4.660789 TGCATCAGAATCTTCGAGATCA 57.339 40.909 0.00 0.59 32.89 2.92
3186 8066 5.211174 TGCATCAGAATCTTCGAGATCAT 57.789 39.130 0.00 0.00 32.89 2.45
3187 8067 5.228665 TGCATCAGAATCTTCGAGATCATC 58.771 41.667 0.00 0.00 32.89 2.92
3188 8068 5.221382 TGCATCAGAATCTTCGAGATCATCA 60.221 40.000 0.00 0.00 32.89 3.07
3189 8069 5.346551 GCATCAGAATCTTCGAGATCATCAG 59.653 44.000 0.00 0.00 32.89 2.90
3190 8070 5.450592 TCAGAATCTTCGAGATCATCAGG 57.549 43.478 0.00 0.00 32.89 3.86
3191 8071 4.892345 TCAGAATCTTCGAGATCATCAGGT 59.108 41.667 0.00 0.00 32.89 4.00
3192 8072 4.983538 CAGAATCTTCGAGATCATCAGGTG 59.016 45.833 0.00 0.00 32.89 4.00
3193 8073 4.892345 AGAATCTTCGAGATCATCAGGTGA 59.108 41.667 0.00 0.00 42.06 4.02
3194 8074 5.362143 AGAATCTTCGAGATCATCAGGTGAA 59.638 40.000 0.00 0.00 40.97 3.18
3195 8075 5.804944 ATCTTCGAGATCATCAGGTGAAT 57.195 39.130 0.00 0.00 40.97 2.57
3196 8076 4.941657 TCTTCGAGATCATCAGGTGAATG 58.058 43.478 0.00 0.00 40.97 2.67
3197 8077 3.103447 TCGAGATCATCAGGTGAATGC 57.897 47.619 0.00 0.00 40.97 3.56
3198 8078 2.431782 TCGAGATCATCAGGTGAATGCA 59.568 45.455 0.00 0.00 40.97 3.96
3199 8079 2.543012 CGAGATCATCAGGTGAATGCAC 59.457 50.000 0.00 0.00 40.97 4.57
3200 8080 3.538591 GAGATCATCAGGTGAATGCACA 58.461 45.455 6.08 0.00 46.96 4.57
3201 8081 3.542648 AGATCATCAGGTGAATGCACAG 58.457 45.455 6.08 0.00 46.96 3.66
3202 8082 1.456296 TCATCAGGTGAATGCACAGC 58.544 50.000 6.08 0.00 46.96 4.40
3203 8083 1.003928 TCATCAGGTGAATGCACAGCT 59.996 47.619 6.08 3.37 46.96 4.24
3204 8084 2.236893 TCATCAGGTGAATGCACAGCTA 59.763 45.455 6.08 0.09 46.96 3.32
3205 8085 2.099141 TCAGGTGAATGCACAGCTAC 57.901 50.000 6.08 0.00 46.96 3.58
3206 8086 1.625315 TCAGGTGAATGCACAGCTACT 59.375 47.619 6.08 0.00 46.96 2.57
3207 8087 2.005451 CAGGTGAATGCACAGCTACTC 58.995 52.381 6.08 0.00 46.96 2.59
3208 8088 1.625315 AGGTGAATGCACAGCTACTCA 59.375 47.619 6.08 0.00 46.96 3.41
3209 8089 2.005451 GGTGAATGCACAGCTACTCAG 58.995 52.381 6.08 0.00 46.96 3.35
3210 8090 2.613977 GGTGAATGCACAGCTACTCAGT 60.614 50.000 6.08 0.00 46.96 3.41
3211 8091 2.414481 GTGAATGCACAGCTACTCAGTG 59.586 50.000 0.00 0.00 44.51 3.66
3212 8092 2.299867 TGAATGCACAGCTACTCAGTGA 59.700 45.455 5.38 0.00 34.50 3.41
3213 8093 3.055602 TGAATGCACAGCTACTCAGTGAT 60.056 43.478 5.38 0.00 34.50 3.06
3214 8094 2.662006 TGCACAGCTACTCAGTGATC 57.338 50.000 5.38 0.00 34.50 2.92
3215 8095 2.174360 TGCACAGCTACTCAGTGATCT 58.826 47.619 5.38 0.00 34.50 2.75
3216 8096 2.564504 TGCACAGCTACTCAGTGATCTT 59.435 45.455 5.38 0.00 34.50 2.40
3217 8097 3.763897 TGCACAGCTACTCAGTGATCTTA 59.236 43.478 5.38 0.00 34.50 2.10
3218 8098 4.403752 TGCACAGCTACTCAGTGATCTTAT 59.596 41.667 5.38 0.00 34.50 1.73
3219 8099 4.744137 GCACAGCTACTCAGTGATCTTATG 59.256 45.833 5.38 0.00 34.50 1.90
3220 8100 5.288015 CACAGCTACTCAGTGATCTTATGG 58.712 45.833 0.00 0.00 34.50 2.74
3221 8101 5.068329 CACAGCTACTCAGTGATCTTATGGA 59.932 44.000 0.00 0.00 34.50 3.41
3222 8102 5.301551 ACAGCTACTCAGTGATCTTATGGAG 59.698 44.000 0.00 0.00 0.00 3.86
3223 8103 4.280677 AGCTACTCAGTGATCTTATGGAGC 59.719 45.833 4.26 4.26 0.00 4.70
3224 8104 4.038522 GCTACTCAGTGATCTTATGGAGCA 59.961 45.833 7.06 0.00 38.09 4.26
3225 8105 5.279406 GCTACTCAGTGATCTTATGGAGCAT 60.279 44.000 7.06 0.00 42.56 3.79
3226 8106 6.071672 GCTACTCAGTGATCTTATGGAGCATA 60.072 42.308 7.06 0.00 42.56 3.14
3227 8107 6.931790 ACTCAGTGATCTTATGGAGCATAT 57.068 37.500 0.00 0.00 42.56 1.78
3228 8108 6.699366 ACTCAGTGATCTTATGGAGCATATG 58.301 40.000 0.00 0.00 42.56 1.78
3229 8109 6.269538 ACTCAGTGATCTTATGGAGCATATGT 59.730 38.462 4.29 0.00 42.56 2.29
3230 8110 6.461640 TCAGTGATCTTATGGAGCATATGTG 58.538 40.000 4.29 0.00 42.56 3.21
3231 8111 5.642491 CAGTGATCTTATGGAGCATATGTGG 59.358 44.000 4.29 0.00 42.56 4.17
3232 8112 5.545335 AGTGATCTTATGGAGCATATGTGGA 59.455 40.000 4.29 0.00 42.56 4.02
3233 8113 5.641209 GTGATCTTATGGAGCATATGTGGAC 59.359 44.000 4.29 0.00 42.56 4.02
3234 8114 4.623932 TCTTATGGAGCATATGTGGACC 57.376 45.455 4.29 3.99 0.00 4.46
3235 8115 3.327757 TCTTATGGAGCATATGTGGACCC 59.672 47.826 4.29 0.04 0.00 4.46
3236 8116 1.521764 ATGGAGCATATGTGGACCCA 58.478 50.000 4.29 5.52 0.00 4.51
3237 8117 0.546122 TGGAGCATATGTGGACCCAC 59.454 55.000 12.07 12.07 46.33 4.61
3247 8127 0.966179 GTGGACCCACAATGGAAACC 59.034 55.000 13.92 0.00 45.53 3.27
3248 8128 0.558220 TGGACCCACAATGGAAACCA 59.442 50.000 0.00 0.00 40.96 3.67
3249 8129 1.062886 TGGACCCACAATGGAAACCAA 60.063 47.619 0.00 0.00 40.96 3.67
3250 8130 2.043227 GGACCCACAATGGAAACCAAA 58.957 47.619 0.00 0.00 40.96 3.28
3251 8131 2.637382 GGACCCACAATGGAAACCAAAT 59.363 45.455 0.00 0.00 40.96 2.32
3252 8132 3.556843 GGACCCACAATGGAAACCAAATG 60.557 47.826 0.00 0.00 40.96 2.32
3253 8133 2.371510 ACCCACAATGGAAACCAAATGG 59.628 45.455 0.00 0.00 40.96 3.16
3254 8134 2.425539 CCACAATGGAAACCAAATGGC 58.574 47.619 0.00 0.00 40.96 4.40
3255 8135 2.038820 CCACAATGGAAACCAAATGGCT 59.961 45.455 0.00 0.00 40.96 4.75
3256 8136 3.260380 CCACAATGGAAACCAAATGGCTA 59.740 43.478 0.00 0.00 40.96 3.93
3257 8137 4.262808 CCACAATGGAAACCAAATGGCTAA 60.263 41.667 0.00 0.00 40.96 3.09
3258 8138 5.490159 CACAATGGAAACCAAATGGCTAAT 58.510 37.500 0.00 0.00 36.95 1.73
3259 8139 5.352016 CACAATGGAAACCAAATGGCTAATG 59.648 40.000 0.00 0.00 36.95 1.90
3260 8140 5.012975 ACAATGGAAACCAAATGGCTAATGT 59.987 36.000 0.00 0.00 36.95 2.71
3261 8141 5.760484 ATGGAAACCAAATGGCTAATGTT 57.240 34.783 0.00 0.00 36.95 2.71
3262 8142 5.559148 TGGAAACCAAATGGCTAATGTTT 57.441 34.783 0.00 0.00 39.32 2.83
3263 8143 5.303971 TGGAAACCAAATGGCTAATGTTTG 58.696 37.500 0.00 0.00 39.32 2.93
3264 8144 5.070981 TGGAAACCAAATGGCTAATGTTTGA 59.929 36.000 0.00 0.00 39.32 2.69
3265 8145 5.639082 GGAAACCAAATGGCTAATGTTTGAG 59.361 40.000 0.00 0.00 39.32 3.02
3266 8146 5.806654 AACCAAATGGCTAATGTTTGAGT 57.193 34.783 0.00 0.00 39.32 3.41
3267 8147 5.806654 ACCAAATGGCTAATGTTTGAGTT 57.193 34.783 0.00 0.00 39.32 3.01
3268 8148 5.540911 ACCAAATGGCTAATGTTTGAGTTG 58.459 37.500 0.00 0.00 39.32 3.16
3269 8149 5.070313 ACCAAATGGCTAATGTTTGAGTTGT 59.930 36.000 0.00 0.00 39.32 3.32
3270 8150 5.406175 CCAAATGGCTAATGTTTGAGTTGTG 59.594 40.000 0.00 0.00 35.43 3.33
3271 8151 3.641437 TGGCTAATGTTTGAGTTGTGC 57.359 42.857 0.00 0.00 0.00 4.57
3272 8152 2.954989 TGGCTAATGTTTGAGTTGTGCA 59.045 40.909 0.00 0.00 0.00 4.57
3273 8153 3.243367 TGGCTAATGTTTGAGTTGTGCAC 60.243 43.478 10.75 10.75 0.00 4.57
3274 8154 3.004734 GGCTAATGTTTGAGTTGTGCACT 59.995 43.478 19.41 0.00 39.07 4.40
3275 8155 4.499696 GGCTAATGTTTGAGTTGTGCACTT 60.500 41.667 19.41 3.42 35.01 3.16
3276 8156 5.278266 GGCTAATGTTTGAGTTGTGCACTTA 60.278 40.000 19.41 3.02 35.01 2.24
3277 8157 6.205784 GCTAATGTTTGAGTTGTGCACTTAA 58.794 36.000 19.41 1.32 35.01 1.85
3278 8158 6.695278 GCTAATGTTTGAGTTGTGCACTTAAA 59.305 34.615 19.41 4.44 38.37 1.52
3279 8159 7.221838 GCTAATGTTTGAGTTGTGCACTTAAAA 59.778 33.333 19.41 8.74 41.36 1.52
3280 8160 6.885735 ATGTTTGAGTTGTGCACTTAAAAC 57.114 33.333 19.41 18.88 41.36 2.43
3281 8161 5.773575 TGTTTGAGTTGTGCACTTAAAACA 58.226 33.333 19.41 20.85 41.36 2.83
3282 8162 6.216569 TGTTTGAGTTGTGCACTTAAAACAA 58.783 32.000 19.41 13.15 43.02 2.83
3283 8163 6.701841 TGTTTGAGTTGTGCACTTAAAACAAA 59.298 30.769 19.41 17.54 43.02 2.83
3284 8164 7.386299 TGTTTGAGTTGTGCACTTAAAACAAAT 59.614 29.630 19.41 0.53 43.02 2.32
3285 8165 7.897575 TTGAGTTGTGCACTTAAAACAAATT 57.102 28.000 19.41 0.00 35.01 1.82
3286 8166 7.897575 TGAGTTGTGCACTTAAAACAAATTT 57.102 28.000 19.41 0.00 35.01 1.82
3287 8167 8.316640 TGAGTTGTGCACTTAAAACAAATTTT 57.683 26.923 19.41 0.00 37.56 1.82
3288 8168 9.424319 TGAGTTGTGCACTTAAAACAAATTTTA 57.576 25.926 19.41 0.00 38.28 1.52
3291 8171 9.980780 GTTGTGCACTTAAAACAAATTTTATGT 57.019 25.926 19.41 5.64 43.85 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 277 7.441157 CGTTTTACTTATCAAGGCATCCTGATA 59.559 37.037 0.00 0.00 32.13 2.15
241 279 5.584649 CGTTTTACTTATCAAGGCATCCTGA 59.415 40.000 0.00 0.00 32.13 3.86
272 310 2.602878 TCAAGCCGTCGACAATTAGAC 58.397 47.619 17.16 0.00 0.00 2.59
299 2108 6.094881 TGCTTTTATCACTAGTGGCCAATAAC 59.905 38.462 22.48 0.00 0.00 1.89
463 2313 2.107343 CGTCCGGTTGGTGTGACA 59.893 61.111 0.00 0.00 36.30 3.58
534 2385 1.540707 CTGGCATGCATGTGTTGTGTA 59.459 47.619 26.79 5.15 0.00 2.90
574 2449 9.561069 GACCAACCTCATTTGATGTTATATAGT 57.439 33.333 1.66 0.00 32.44 2.12
575 2450 9.784531 AGACCAACCTCATTTGATGTTATATAG 57.215 33.333 1.66 0.00 32.44 1.31
630 2505 7.331934 GTCTTCACATGTTCAACTATAGAAGCA 59.668 37.037 6.78 0.53 32.29 3.91
638 2518 4.304110 GTCGGTCTTCACATGTTCAACTA 58.696 43.478 0.00 0.00 0.00 2.24
714 2598 6.012658 TGGTAATTTTGTCTGCAGATGTTC 57.987 37.500 21.47 7.44 0.00 3.18
720 2604 5.388682 CGCAAATTGGTAATTTTGTCTGCAG 60.389 40.000 7.63 7.63 38.97 4.41
790 2681 4.737649 GCATGTGTGTCTCGGAATCTATCA 60.738 45.833 0.00 0.00 0.00 2.15
845 2736 1.525995 CAACCAACCAGCCACGTCT 60.526 57.895 0.00 0.00 0.00 4.18
887 2819 4.202441 ACTGATGAACAAAGAAGCACACT 58.798 39.130 0.00 0.00 0.00 3.55
931 2871 7.388500 GCTACCTACACCTAAATACAAACACAA 59.612 37.037 0.00 0.00 0.00 3.33
949 2889 4.462133 TGATGAGTGGACTAGCTACCTAC 58.538 47.826 2.36 0.42 0.00 3.18
950 2890 4.790718 TGATGAGTGGACTAGCTACCTA 57.209 45.455 2.36 0.00 0.00 3.08
970 2910 4.274459 GCTGCCCAAGAGTACTCAATAATG 59.726 45.833 24.44 13.76 0.00 1.90
971 2911 4.164988 AGCTGCCCAAGAGTACTCAATAAT 59.835 41.667 24.44 0.36 0.00 1.28
972 2912 3.519510 AGCTGCCCAAGAGTACTCAATAA 59.480 43.478 24.44 4.51 0.00 1.40
973 2913 3.107601 AGCTGCCCAAGAGTACTCAATA 58.892 45.455 24.44 4.24 0.00 1.90
974 2914 1.912043 AGCTGCCCAAGAGTACTCAAT 59.088 47.619 24.44 10.31 0.00 2.57
1061 3001 1.808799 CTACTCCACGCAGCTGCTG 60.809 63.158 34.22 27.96 39.32 4.41
1140 3095 1.212935 GGGGATGCATACTCAACCACT 59.787 52.381 9.27 0.00 30.52 4.00
1192 3162 2.432628 CTCGAACACCTGGTCCGC 60.433 66.667 0.00 0.00 0.00 5.54
1207 3180 1.510480 AACACTTGCGCTGCTTCCTC 61.510 55.000 9.73 0.00 0.00 3.71
1217 3190 3.818961 AGTCATCATTGAACACTTGCG 57.181 42.857 0.00 0.00 32.48 4.85
1223 3196 8.853077 AATGAGAAAGTAGTCATCATTGAACA 57.147 30.769 0.00 0.00 38.74 3.18
1232 3205 8.772250 TCTTTCCCATAATGAGAAAGTAGTCAT 58.228 33.333 15.08 0.00 44.36 3.06
1239 3212 7.067859 TGCATCTTCTTTCCCATAATGAGAAAG 59.932 37.037 10.98 10.98 45.04 2.62
1253 3229 3.839051 GGAACCTGTGCATCTTCTTTC 57.161 47.619 0.00 0.00 0.00 2.62
1329 3305 3.095421 CCATGGTGGTAAGGGCCA 58.905 61.111 6.18 0.00 36.64 5.36
1357 3336 2.108566 CTGCTCCGCCTCCATCAG 59.891 66.667 0.00 0.00 0.00 2.90
1385 3376 2.894240 GATGCATTGGTTGGCAGCCG 62.894 60.000 15.95 2.62 44.24 5.52
1406 3397 4.500116 GTGAGCCGCTCGAGTCCC 62.500 72.222 15.13 2.29 32.35 4.46
1417 3408 1.410882 GTACATCTCCTGGAGTGAGCC 59.589 57.143 22.50 6.64 0.00 4.70
1455 3446 4.717629 TTGCGGGCGACGTCTGAG 62.718 66.667 13.54 3.52 46.52 3.35
1472 3463 1.112113 ATCATCGTGGCGGTAGAGTT 58.888 50.000 0.00 0.00 0.00 3.01
1512 3509 0.684535 TCATCGGCACAAAGTCCTCA 59.315 50.000 0.00 0.00 0.00 3.86
1515 3512 1.453155 ACATCATCGGCACAAAGTCC 58.547 50.000 0.00 0.00 0.00 3.85
1568 3565 4.437794 CGACGTAGCTGTCCACATAACTAA 60.438 45.833 0.00 0.00 35.40 2.24
1577 3574 1.873863 CTGACGACGTAGCTGTCCA 59.126 57.895 0.00 0.00 35.40 4.02
1578 3575 1.514443 GCTGACGACGTAGCTGTCC 60.514 63.158 16.91 0.00 36.99 4.02
1582 3579 1.139734 CCATGCTGACGACGTAGCT 59.860 57.895 21.58 0.00 40.52 3.32
1583 3580 0.249073 ATCCATGCTGACGACGTAGC 60.249 55.000 17.18 17.18 40.29 3.58
1585 3582 2.030274 CCATATCCATGCTGACGACGTA 60.030 50.000 0.00 0.00 0.00 3.57
1589 3586 0.758123 TGCCATATCCATGCTGACGA 59.242 50.000 0.00 0.00 0.00 4.20
1592 3589 1.770061 TCAGTGCCATATCCATGCTGA 59.230 47.619 0.00 0.00 30.78 4.26
1593 3590 2.265589 TCAGTGCCATATCCATGCTG 57.734 50.000 0.00 0.00 0.00 4.41
1594 3591 2.092267 TGTTCAGTGCCATATCCATGCT 60.092 45.455 0.00 0.00 0.00 3.79
1603 3600 4.012374 CAGAAATACCTGTTCAGTGCCAT 58.988 43.478 0.00 0.00 0.00 4.40
1604 3601 3.411446 CAGAAATACCTGTTCAGTGCCA 58.589 45.455 0.00 0.00 0.00 4.92
1608 3605 2.076863 GCGCAGAAATACCTGTTCAGT 58.923 47.619 0.30 0.00 36.57 3.41
1617 3614 1.730064 TCGAAGTTGGCGCAGAAATAC 59.270 47.619 10.83 0.00 0.00 1.89
1680 3677 2.200337 GGCTTCAACCACCACCCAC 61.200 63.158 0.00 0.00 0.00 4.61
1705 3702 0.585357 GGCGCTAGATGCATGAAGTG 59.415 55.000 2.46 9.00 43.06 3.16
1767 3770 2.311463 TCAATTCGGTTTTTCAGGCCA 58.689 42.857 5.01 0.00 0.00 5.36
1785 3788 2.225791 CTTGGTCGACGCCAGGATCA 62.226 60.000 9.92 0.00 40.01 2.92
1793 3796 3.554692 CGATGCCTTGGTCGACGC 61.555 66.667 9.92 7.86 40.11 5.19
1802 3817 1.183549 AGGAACTACGACGATGCCTT 58.816 50.000 0.00 0.00 36.02 4.35
1912 3927 2.270205 CATGGGCTTGTCTCCGCT 59.730 61.111 0.00 0.00 0.00 5.52
1988 4003 3.883489 GTGCACTAACCCTGACTTTTCTT 59.117 43.478 10.32 0.00 0.00 2.52
2106 4124 0.037139 GCATGTTCTTGCCAATGCCA 60.037 50.000 0.00 0.00 36.60 4.92
2107 4125 1.079875 CGCATGTTCTTGCCAATGCC 61.080 55.000 0.00 0.00 39.52 4.40
2160 4418 6.897966 ACATCCTGTCCTTGAAGTTCTCTATA 59.102 38.462 4.17 0.00 0.00 1.31
2163 4421 3.906846 ACATCCTGTCCTTGAAGTTCTCT 59.093 43.478 4.17 0.00 0.00 3.10
2178 4436 1.150081 GAGCCCCCATGACATCCTG 59.850 63.158 0.00 0.00 0.00 3.86
2190 4448 1.501582 AGAGGTAAGATGTGAGCCCC 58.498 55.000 0.00 0.00 0.00 5.80
2191 4449 2.158885 GGAAGAGGTAAGATGTGAGCCC 60.159 54.545 0.00 0.00 0.00 5.19
2198 4456 4.633565 GCTTGTCAAGGAAGAGGTAAGATG 59.366 45.833 14.40 0.00 0.00 2.90
2199 4457 4.287067 TGCTTGTCAAGGAAGAGGTAAGAT 59.713 41.667 14.40 0.00 0.00 2.40
2202 4460 3.391296 AGTGCTTGTCAAGGAAGAGGTAA 59.609 43.478 14.40 0.00 0.00 2.85
2215 4473 2.159517 CGATTTTAGGCCAGTGCTTGTC 60.160 50.000 5.01 0.00 37.74 3.18
2246 4504 0.806868 AACTGCAGCAATGATCGTGG 59.193 50.000 15.27 0.00 0.00 4.94
2258 4516 3.486375 CGACAAGATGCCAATAACTGCAG 60.486 47.826 13.48 13.48 41.46 4.41
2268 4526 1.446099 GAGCGACGACAAGATGCCA 60.446 57.895 0.00 0.00 0.00 4.92
2357 4615 8.856153 TTTACAATGTGAATAGTAAGAGGCAA 57.144 30.769 0.00 0.00 0.00 4.52
2401 4659 9.436957 AGATACAACGAATTTCACTTGAAGTAT 57.563 29.630 0.00 0.00 35.21 2.12
2404 4662 7.576236 ACAGATACAACGAATTTCACTTGAAG 58.424 34.615 9.64 0.00 35.21 3.02
2445 6032 9.853921 GCAAATAATTAATGCAGATTGCTTTAC 57.146 29.630 17.19 0.00 45.31 2.01
2447 6034 8.495361 TGCAAATAATTAATGCAGATTGCTTT 57.505 26.923 19.62 5.18 44.52 3.51
2465 6052 9.478768 CATGTATAATCCAATTGCTTGCAAATA 57.521 29.630 12.17 1.51 0.00 1.40
2466 6053 8.205512 TCATGTATAATCCAATTGCTTGCAAAT 58.794 29.630 12.17 0.78 0.00 2.32
2467 6054 7.554211 TCATGTATAATCCAATTGCTTGCAAA 58.446 30.769 12.17 0.00 0.00 3.68
2468 6055 7.110043 TCATGTATAATCCAATTGCTTGCAA 57.890 32.000 10.57 10.57 0.00 4.08
2469 6056 6.712179 TCATGTATAATCCAATTGCTTGCA 57.288 33.333 0.00 0.00 0.00 4.08
2470 6057 8.597662 AATTCATGTATAATCCAATTGCTTGC 57.402 30.769 0.00 0.00 0.00 4.01
2479 6066 9.695526 GCTTGCAAATAATTCATGTATAATCCA 57.304 29.630 0.00 0.00 0.00 3.41
2480 6067 9.695526 TGCTTGCAAATAATTCATGTATAATCC 57.304 29.630 0.00 0.00 0.00 3.01
2484 6071 9.518906 CACTTGCTTGCAAATAATTCATGTATA 57.481 29.630 9.39 0.00 0.00 1.47
2485 6072 7.493320 CCACTTGCTTGCAAATAATTCATGTAT 59.507 33.333 9.39 0.00 0.00 2.29
2486 6073 6.812656 CCACTTGCTTGCAAATAATTCATGTA 59.187 34.615 9.39 0.00 0.00 2.29
2487 6074 5.640357 CCACTTGCTTGCAAATAATTCATGT 59.360 36.000 9.39 0.00 0.00 3.21
2510 6097 7.451731 TCTCCCCCATATCATTTATACATCC 57.548 40.000 0.00 0.00 0.00 3.51
2543 6133 5.241662 GGCAAACTTGAGAGTAGTCTTCAT 58.758 41.667 0.56 0.00 34.21 2.57
2555 6221 4.404654 GGCGCGGGCAAACTTGAG 62.405 66.667 26.61 0.00 42.47 3.02
2575 6241 0.820891 CTGCTCCAAACACCTGCACT 60.821 55.000 0.00 0.00 0.00 4.40
2639 6698 1.479573 CCCTCTGGCCTCTCGAATAGA 60.480 57.143 3.32 0.00 0.00 1.98
2697 7098 1.508088 GGGCAGTTCTTCCATTGCG 59.492 57.895 0.00 0.00 37.43 4.85
2725 7305 3.063997 GTGTTGCCTTGATACATTCTCGG 59.936 47.826 0.00 0.00 0.00 4.63
2742 7323 0.754957 TGGTGGCCTCTTTGGTGTTG 60.755 55.000 3.32 0.00 38.35 3.33
2743 7324 0.188342 ATGGTGGCCTCTTTGGTGTT 59.812 50.000 3.32 0.00 38.35 3.32
2779 7360 5.981315 GCCAAATTCATAAGTCATGTGATGG 59.019 40.000 0.00 0.00 35.96 3.51
2909 7490 3.953712 TGTAGTCATGGTCGTTGACAT 57.046 42.857 6.59 0.00 44.73 3.06
2974 7853 3.193903 TCGGATATGGTCTTCACAAACGA 59.806 43.478 0.00 0.00 0.00 3.85
3012 7892 2.867287 TGATGCAAAGTGGTTGTGTG 57.133 45.000 0.00 0.00 39.63 3.82
3016 7896 4.218200 TCCTACATTGATGCAAAGTGGTTG 59.782 41.667 0.00 0.00 40.50 3.77
3046 7926 5.815233 TCACCCTCATCCTCAATAATCTC 57.185 43.478 0.00 0.00 0.00 2.75
3049 7929 4.666907 ACCATCACCCTCATCCTCAATAAT 59.333 41.667 0.00 0.00 0.00 1.28
3050 7930 4.047166 ACCATCACCCTCATCCTCAATAA 58.953 43.478 0.00 0.00 0.00 1.40
3054 7934 1.206878 CACCATCACCCTCATCCTCA 58.793 55.000 0.00 0.00 0.00 3.86
3055 7935 1.207791 ACACCATCACCCTCATCCTC 58.792 55.000 0.00 0.00 0.00 3.71
3056 7936 1.283029 CAACACCATCACCCTCATCCT 59.717 52.381 0.00 0.00 0.00 3.24
3057 7937 1.755179 CAACACCATCACCCTCATCC 58.245 55.000 0.00 0.00 0.00 3.51
3060 7940 1.357137 TAGCAACACCATCACCCTCA 58.643 50.000 0.00 0.00 0.00 3.86
3061 7941 2.489938 TTAGCAACACCATCACCCTC 57.510 50.000 0.00 0.00 0.00 4.30
3063 7943 2.029380 GGTTTTAGCAACACCATCACCC 60.029 50.000 0.00 0.00 0.00 4.61
3064 7944 2.625790 TGGTTTTAGCAACACCATCACC 59.374 45.455 3.67 0.00 35.57 4.02
3065 7945 4.314740 TTGGTTTTAGCAACACCATCAC 57.685 40.909 7.45 0.00 40.35 3.06
3067 7947 5.132897 TCATTGGTTTTAGCAACACCATC 57.867 39.130 7.45 0.00 40.35 3.51
3072 7952 7.254727 GCTTCAAAATCATTGGTTTTAGCAACA 60.255 33.333 18.55 0.00 38.51 3.33
3073 7953 7.071414 GCTTCAAAATCATTGGTTTTAGCAAC 58.929 34.615 18.55 3.22 38.51 4.17
3074 7954 6.073873 CGCTTCAAAATCATTGGTTTTAGCAA 60.074 34.615 21.27 10.04 40.12 3.91
3077 7957 5.634859 AGCGCTTCAAAATCATTGGTTTTAG 59.365 36.000 2.64 4.32 0.00 1.85
3079 7959 4.379652 AGCGCTTCAAAATCATTGGTTTT 58.620 34.783 2.64 1.72 0.00 2.43
3080 7960 3.993920 AGCGCTTCAAAATCATTGGTTT 58.006 36.364 2.64 0.00 0.00 3.27
3081 7961 3.665745 AGCGCTTCAAAATCATTGGTT 57.334 38.095 2.64 0.00 0.00 3.67
3082 7962 3.319755 CAAGCGCTTCAAAATCATTGGT 58.680 40.909 22.21 0.00 0.00 3.67
3083 7963 2.669434 CCAAGCGCTTCAAAATCATTGG 59.331 45.455 22.21 11.60 0.00 3.16
3084 7964 3.577667 TCCAAGCGCTTCAAAATCATTG 58.422 40.909 22.21 5.46 0.00 2.82
3085 7965 3.507233 TCTCCAAGCGCTTCAAAATCATT 59.493 39.130 22.21 0.00 0.00 2.57
3088 7968 3.237628 GTTCTCCAAGCGCTTCAAAATC 58.762 45.455 22.21 6.40 0.00 2.17
3089 7969 2.622942 TGTTCTCCAAGCGCTTCAAAAT 59.377 40.909 22.21 0.00 0.00 1.82
3090 7970 2.020720 TGTTCTCCAAGCGCTTCAAAA 58.979 42.857 22.21 9.58 0.00 2.44
3092 7972 1.603802 CTTGTTCTCCAAGCGCTTCAA 59.396 47.619 22.21 18.37 43.84 2.69
3093 7973 1.229428 CTTGTTCTCCAAGCGCTTCA 58.771 50.000 22.21 11.51 43.84 3.02
3101 7981 4.541705 TGGGATTTGAACTTGTTCTCCAA 58.458 39.130 16.69 7.54 0.00 3.53
3102 7982 4.141274 TCTGGGATTTGAACTTGTTCTCCA 60.141 41.667 16.69 13.17 0.00 3.86
3103 7983 4.398319 TCTGGGATTTGAACTTGTTCTCC 58.602 43.478 13.65 11.73 0.00 3.71
3104 7984 5.765182 TCTTCTGGGATTTGAACTTGTTCTC 59.235 40.000 13.65 4.40 0.00 2.87
3105 7985 5.694995 TCTTCTGGGATTTGAACTTGTTCT 58.305 37.500 13.65 0.00 0.00 3.01
3106 7986 6.207417 TGATCTTCTGGGATTTGAACTTGTTC 59.793 38.462 6.56 6.56 0.00 3.18
3107 7987 6.070656 TGATCTTCTGGGATTTGAACTTGTT 58.929 36.000 0.00 0.00 0.00 2.83
3108 7988 5.634118 TGATCTTCTGGGATTTGAACTTGT 58.366 37.500 0.00 0.00 0.00 3.16
3109 7989 6.432162 TCTTGATCTTCTGGGATTTGAACTTG 59.568 38.462 0.00 0.00 0.00 3.16
3110 7990 6.546484 TCTTGATCTTCTGGGATTTGAACTT 58.454 36.000 0.00 0.00 0.00 2.66
3111 7991 6.131972 TCTTGATCTTCTGGGATTTGAACT 57.868 37.500 0.00 0.00 0.00 3.01
3114 7994 4.885907 GCATCTTGATCTTCTGGGATTTGA 59.114 41.667 0.00 0.00 0.00 2.69
3115 7995 4.643334 TGCATCTTGATCTTCTGGGATTTG 59.357 41.667 0.00 0.00 0.00 2.32
3116 7996 4.863548 TGCATCTTGATCTTCTGGGATTT 58.136 39.130 0.00 0.00 0.00 2.17
3117 7997 4.515028 TGCATCTTGATCTTCTGGGATT 57.485 40.909 0.00 0.00 0.00 3.01
3118 7998 4.515028 TTGCATCTTGATCTTCTGGGAT 57.485 40.909 0.00 0.00 0.00 3.85
3119 7999 4.305539 TTTGCATCTTGATCTTCTGGGA 57.694 40.909 0.00 0.00 0.00 4.37
3120 8000 4.643334 TGATTTGCATCTTGATCTTCTGGG 59.357 41.667 0.00 0.00 0.00 4.45
3121 8001 5.733655 GCTGATTTGCATCTTGATCTTCTGG 60.734 44.000 0.00 0.00 0.00 3.86
3122 8002 5.066634 AGCTGATTTGCATCTTGATCTTCTG 59.933 40.000 0.00 0.00 34.99 3.02
3123 8003 5.194432 AGCTGATTTGCATCTTGATCTTCT 58.806 37.500 0.00 0.00 34.99 2.85
3124 8004 5.502153 AGCTGATTTGCATCTTGATCTTC 57.498 39.130 0.00 0.00 34.99 2.87
3125 8005 5.916661 AAGCTGATTTGCATCTTGATCTT 57.083 34.783 0.00 0.00 32.08 2.40
3126 8006 6.771267 TCATAAGCTGATTTGCATCTTGATCT 59.229 34.615 0.00 0.00 34.13 2.75
3127 8007 6.967135 TCATAAGCTGATTTGCATCTTGATC 58.033 36.000 0.00 0.00 34.13 2.92
3129 8009 6.151480 TGTTCATAAGCTGATTTGCATCTTGA 59.849 34.615 0.00 0.00 34.13 3.02
3130 8010 6.327154 TGTTCATAAGCTGATTTGCATCTTG 58.673 36.000 0.00 0.00 34.13 3.02
3131 8011 6.519679 TGTTCATAAGCTGATTTGCATCTT 57.480 33.333 0.00 0.00 36.88 2.40
3132 8012 6.710597 ATGTTCATAAGCTGATTTGCATCT 57.289 33.333 0.00 0.00 32.72 2.90
3133 8013 7.167635 CAGAATGTTCATAAGCTGATTTGCATC 59.832 37.037 0.00 0.00 32.72 3.91
3134 8014 6.978659 CAGAATGTTCATAAGCTGATTTGCAT 59.021 34.615 0.00 0.00 32.72 3.96
3135 8015 6.327154 CAGAATGTTCATAAGCTGATTTGCA 58.673 36.000 0.00 0.00 32.72 4.08
3136 8016 5.231568 GCAGAATGTTCATAAGCTGATTTGC 59.768 40.000 0.00 0.00 39.31 3.68
3137 8017 6.327154 TGCAGAATGTTCATAAGCTGATTTG 58.673 36.000 0.00 0.00 39.31 2.32
3140 8020 5.434408 TCTGCAGAATGTTCATAAGCTGAT 58.566 37.500 15.67 0.00 39.31 2.90
3141 8021 4.835678 TCTGCAGAATGTTCATAAGCTGA 58.164 39.130 15.67 9.90 39.31 4.26
3143 8023 4.036498 GCATCTGCAGAATGTTCATAAGCT 59.964 41.667 22.50 0.00 41.59 3.74
3144 8024 4.288531 GCATCTGCAGAATGTTCATAAGC 58.711 43.478 22.50 8.16 41.59 3.09
3157 8037 7.025136 CTCGAAGATTCTGATGCATCTGCAG 62.025 48.000 26.32 16.58 46.97 4.41
3158 8038 8.629844 ATCTCGAAGATTCTGATGCATCTGCA 62.630 42.308 26.32 17.33 43.44 4.41
3159 8039 3.129109 TCGAAGATTCTGATGCATCTGC 58.871 45.455 26.32 13.53 42.50 4.26
3160 8040 4.618965 TCTCGAAGATTCTGATGCATCTG 58.381 43.478 26.32 24.85 33.89 2.90
3161 8041 4.933505 TCTCGAAGATTCTGATGCATCT 57.066 40.909 26.32 7.08 33.89 2.90
3162 8042 5.228665 TGATCTCGAAGATTCTGATGCATC 58.771 41.667 20.14 20.14 34.53 3.91
3164 8044 4.660789 TGATCTCGAAGATTCTGATGCA 57.339 40.909 0.00 0.00 34.53 3.96
3165 8045 5.228665 TGATGATCTCGAAGATTCTGATGC 58.771 41.667 0.00 0.00 34.53 3.91
3166 8046 5.865013 CCTGATGATCTCGAAGATTCTGATG 59.135 44.000 0.00 0.00 34.53 3.07
3167 8047 5.539574 ACCTGATGATCTCGAAGATTCTGAT 59.460 40.000 0.00 0.00 34.53 2.90
3168 8048 4.892345 ACCTGATGATCTCGAAGATTCTGA 59.108 41.667 0.00 0.00 34.53 3.27
3169 8049 4.983538 CACCTGATGATCTCGAAGATTCTG 59.016 45.833 0.00 0.00 34.53 3.02
3170 8050 4.892345 TCACCTGATGATCTCGAAGATTCT 59.108 41.667 0.00 0.00 34.53 2.40
3171 8051 5.193663 TCACCTGATGATCTCGAAGATTC 57.806 43.478 0.00 0.00 34.53 2.52
3172 8052 5.604758 TTCACCTGATGATCTCGAAGATT 57.395 39.130 0.00 0.00 34.53 2.40
3173 8053 5.539979 CATTCACCTGATGATCTCGAAGAT 58.460 41.667 0.00 0.00 37.73 2.40
3174 8054 4.738839 GCATTCACCTGATGATCTCGAAGA 60.739 45.833 0.00 0.00 37.11 2.87
3175 8055 3.493877 GCATTCACCTGATGATCTCGAAG 59.506 47.826 0.00 0.00 37.11 3.79
3176 8056 3.118665 TGCATTCACCTGATGATCTCGAA 60.119 43.478 0.00 0.00 37.11 3.71
3177 8057 2.431782 TGCATTCACCTGATGATCTCGA 59.568 45.455 0.00 0.00 37.11 4.04
3178 8058 2.543012 GTGCATTCACCTGATGATCTCG 59.457 50.000 0.00 0.00 37.11 4.04
3179 8059 3.538591 TGTGCATTCACCTGATGATCTC 58.461 45.455 0.00 0.00 42.46 2.75
3180 8060 3.542648 CTGTGCATTCACCTGATGATCT 58.457 45.455 0.00 0.00 42.46 2.75
3181 8061 2.033049 GCTGTGCATTCACCTGATGATC 59.967 50.000 0.00 0.00 42.46 2.92
3182 8062 2.022195 GCTGTGCATTCACCTGATGAT 58.978 47.619 0.00 0.00 42.46 2.45
3183 8063 1.003928 AGCTGTGCATTCACCTGATGA 59.996 47.619 0.00 0.00 42.46 2.92
3184 8064 1.460504 AGCTGTGCATTCACCTGATG 58.539 50.000 0.00 0.00 42.46 3.07
3185 8065 2.238144 AGTAGCTGTGCATTCACCTGAT 59.762 45.455 0.00 0.00 42.46 2.90
3186 8066 1.625315 AGTAGCTGTGCATTCACCTGA 59.375 47.619 0.00 0.00 42.46 3.86
3187 8067 2.005451 GAGTAGCTGTGCATTCACCTG 58.995 52.381 0.00 0.00 42.46 4.00
3188 8068 1.625315 TGAGTAGCTGTGCATTCACCT 59.375 47.619 0.00 0.00 42.46 4.00
3189 8069 2.005451 CTGAGTAGCTGTGCATTCACC 58.995 52.381 0.00 0.00 42.46 4.02
3190 8070 2.414481 CACTGAGTAGCTGTGCATTCAC 59.586 50.000 0.00 0.00 43.40 3.18
3191 8071 2.299867 TCACTGAGTAGCTGTGCATTCA 59.700 45.455 0.00 0.00 43.69 2.57
3192 8072 2.964740 TCACTGAGTAGCTGTGCATTC 58.035 47.619 0.00 0.00 43.69 2.67
3193 8073 3.197333 AGATCACTGAGTAGCTGTGCATT 59.803 43.478 0.00 0.00 43.69 3.56
3194 8074 2.765135 AGATCACTGAGTAGCTGTGCAT 59.235 45.455 0.00 0.00 43.69 3.96
3195 8075 2.174360 AGATCACTGAGTAGCTGTGCA 58.826 47.619 0.00 0.00 43.69 4.57
3196 8076 2.957491 AGATCACTGAGTAGCTGTGC 57.043 50.000 0.00 0.00 43.69 4.57
3197 8077 5.068329 TCCATAAGATCACTGAGTAGCTGTG 59.932 44.000 0.00 0.00 44.91 3.66
3198 8078 5.204292 TCCATAAGATCACTGAGTAGCTGT 58.796 41.667 0.00 0.00 0.00 4.40
3199 8079 5.771469 CTCCATAAGATCACTGAGTAGCTG 58.229 45.833 0.00 0.00 0.00 4.24
3200 8080 4.280677 GCTCCATAAGATCACTGAGTAGCT 59.719 45.833 0.00 0.00 0.00 3.32
3201 8081 4.038522 TGCTCCATAAGATCACTGAGTAGC 59.961 45.833 0.00 0.00 0.00 3.58
3202 8082 5.781210 TGCTCCATAAGATCACTGAGTAG 57.219 43.478 0.00 0.00 0.00 2.57
3203 8083 7.452813 ACATATGCTCCATAAGATCACTGAGTA 59.547 37.037 1.58 0.00 29.74 2.59
3204 8084 6.269538 ACATATGCTCCATAAGATCACTGAGT 59.730 38.462 1.58 0.00 29.74 3.41
3205 8085 6.590677 CACATATGCTCCATAAGATCACTGAG 59.409 42.308 1.58 0.00 29.74 3.35
3206 8086 6.461640 CACATATGCTCCATAAGATCACTGA 58.538 40.000 1.58 0.00 29.74 3.41
3207 8087 5.642491 CCACATATGCTCCATAAGATCACTG 59.358 44.000 1.58 0.00 29.74 3.66
3208 8088 5.545335 TCCACATATGCTCCATAAGATCACT 59.455 40.000 1.58 0.00 29.74 3.41
3209 8089 5.641209 GTCCACATATGCTCCATAAGATCAC 59.359 44.000 1.58 0.00 29.74 3.06
3210 8090 5.280164 GGTCCACATATGCTCCATAAGATCA 60.280 44.000 1.58 0.00 29.74 2.92
3211 8091 5.181748 GGTCCACATATGCTCCATAAGATC 58.818 45.833 1.58 0.00 29.74 2.75
3212 8092 4.018960 GGGTCCACATATGCTCCATAAGAT 60.019 45.833 1.58 0.00 29.74 2.40
3213 8093 3.327757 GGGTCCACATATGCTCCATAAGA 59.672 47.826 1.58 0.00 29.74 2.10
3214 8094 3.072915 TGGGTCCACATATGCTCCATAAG 59.927 47.826 1.58 0.00 29.74 1.73
3215 8095 3.052329 TGGGTCCACATATGCTCCATAA 58.948 45.455 1.58 0.00 29.74 1.90
3216 8096 2.371841 GTGGGTCCACATATGCTCCATA 59.628 50.000 14.69 0.00 45.53 2.74
3217 8097 1.143684 GTGGGTCCACATATGCTCCAT 59.856 52.381 14.69 0.00 45.53 3.41
3218 8098 0.546122 GTGGGTCCACATATGCTCCA 59.454 55.000 14.69 1.09 45.53 3.86
3219 8099 3.403936 GTGGGTCCACATATGCTCC 57.596 57.895 14.69 0.35 45.53 4.70
3228 8108 0.966179 GGTTTCCATTGTGGGTCCAC 59.034 55.000 12.89 12.89 46.33 4.02
3229 8109 0.558220 TGGTTTCCATTGTGGGTCCA 59.442 50.000 0.00 0.81 38.32 4.02
3230 8110 1.710816 TTGGTTTCCATTGTGGGTCC 58.289 50.000 0.00 0.00 38.32 4.46
3231 8111 3.556843 CCATTTGGTTTCCATTGTGGGTC 60.557 47.826 0.00 0.00 38.32 4.46
3232 8112 2.371510 CCATTTGGTTTCCATTGTGGGT 59.628 45.455 0.00 0.00 38.32 4.51
3233 8113 2.875267 GCCATTTGGTTTCCATTGTGGG 60.875 50.000 12.80 0.00 36.34 4.61
3234 8114 2.038820 AGCCATTTGGTTTCCATTGTGG 59.961 45.455 0.00 8.97 36.77 4.17
3235 8115 3.405823 AGCCATTTGGTTTCCATTGTG 57.594 42.857 0.00 0.00 37.57 3.33
3236 8116 5.012975 ACATTAGCCATTTGGTTTCCATTGT 59.987 36.000 0.00 0.00 37.57 2.71
3237 8117 5.490159 ACATTAGCCATTTGGTTTCCATTG 58.510 37.500 0.00 0.00 37.57 2.82
3238 8118 5.760484 ACATTAGCCATTTGGTTTCCATT 57.240 34.783 0.00 0.00 37.57 3.16
3239 8119 5.760484 AACATTAGCCATTTGGTTTCCAT 57.240 34.783 0.00 0.00 37.57 3.41
3240 8120 5.070981 TCAAACATTAGCCATTTGGTTTCCA 59.929 36.000 0.00 0.00 37.57 3.53
3241 8121 5.546526 TCAAACATTAGCCATTTGGTTTCC 58.453 37.500 0.00 0.00 37.57 3.13
3242 8122 6.223120 ACTCAAACATTAGCCATTTGGTTTC 58.777 36.000 0.00 0.00 37.57 2.78
3243 8123 6.173427 ACTCAAACATTAGCCATTTGGTTT 57.827 33.333 0.00 0.00 37.57 3.27
3244 8124 5.806654 ACTCAAACATTAGCCATTTGGTT 57.193 34.783 0.00 0.00 37.57 3.67
3245 8125 5.070313 ACAACTCAAACATTAGCCATTTGGT 59.930 36.000 0.00 0.00 37.57 3.67
3246 8126 5.406175 CACAACTCAAACATTAGCCATTTGG 59.594 40.000 0.00 0.00 34.70 3.28
3247 8127 5.107375 GCACAACTCAAACATTAGCCATTTG 60.107 40.000 0.00 0.00 35.15 2.32
3248 8128 4.990426 GCACAACTCAAACATTAGCCATTT 59.010 37.500 0.00 0.00 0.00 2.32
3249 8129 4.039004 TGCACAACTCAAACATTAGCCATT 59.961 37.500 0.00 0.00 0.00 3.16
3250 8130 3.573538 TGCACAACTCAAACATTAGCCAT 59.426 39.130 0.00 0.00 0.00 4.40
3251 8131 2.954989 TGCACAACTCAAACATTAGCCA 59.045 40.909 0.00 0.00 0.00 4.75
3252 8132 3.004734 AGTGCACAACTCAAACATTAGCC 59.995 43.478 21.04 0.00 31.64 3.93
3253 8133 4.228912 AGTGCACAACTCAAACATTAGC 57.771 40.909 21.04 0.00 31.64 3.09
3254 8134 8.531530 GTTTTAAGTGCACAACTCAAACATTAG 58.468 33.333 21.04 0.00 39.55 1.73
3255 8135 8.029522 TGTTTTAAGTGCACAACTCAAACATTA 58.970 29.630 21.04 1.60 42.02 1.90
3256 8136 6.870965 TGTTTTAAGTGCACAACTCAAACATT 59.129 30.769 21.04 2.64 42.02 2.71
3257 8137 6.393990 TGTTTTAAGTGCACAACTCAAACAT 58.606 32.000 21.04 0.00 42.02 2.71
3258 8138 5.773575 TGTTTTAAGTGCACAACTCAAACA 58.226 33.333 21.04 20.36 43.28 2.83
3259 8139 6.698359 TTGTTTTAAGTGCACAACTCAAAC 57.302 33.333 21.04 18.29 38.56 2.93
3260 8140 7.897575 ATTTGTTTTAAGTGCACAACTCAAA 57.102 28.000 21.04 19.63 38.56 2.69
3261 8141 7.897575 AATTTGTTTTAAGTGCACAACTCAA 57.102 28.000 21.04 12.81 38.56 3.02
3262 8142 7.897575 AAATTTGTTTTAAGTGCACAACTCA 57.102 28.000 21.04 7.43 38.56 3.41
3265 8145 9.980780 ACATAAAATTTGTTTTAAGTGCACAAC 57.019 25.926 21.04 14.74 30.22 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.