Multiple sequence alignment - TraesCS1D01G015400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G015400 chr1D 100.000 3771 0 0 1417 5187 7209248 7213018 0.000000e+00 6964.0
1 TraesCS1D01G015400 chr1D 88.994 1581 155 12 2490 4058 7352587 7354160 0.000000e+00 1938.0
2 TraesCS1D01G015400 chr1D 100.000 1039 0 0 1 1039 7207832 7208870 0.000000e+00 1919.0
3 TraesCS1D01G015400 chr1D 90.931 1235 100 8 2916 4149 7875656 7874433 0.000000e+00 1650.0
4 TraesCS1D01G015400 chr1D 91.493 1152 95 1 2916 4067 7897992 7896844 0.000000e+00 1581.0
5 TraesCS1D01G015400 chr1D 86.207 899 101 14 1417 2304 7899191 7898305 0.000000e+00 952.0
6 TraesCS1D01G015400 chr1D 85.355 915 102 19 1417 2304 7876917 7876008 0.000000e+00 918.0
7 TraesCS1D01G015400 chr1D 81.695 885 126 27 1419 2293 7351453 7352311 0.000000e+00 704.0
8 TraesCS1D01G015400 chr1D 86.967 399 40 5 235 627 7876996 7876604 6.170000e-119 438.0
9 TraesCS1D01G015400 chr1D 86.717 399 41 5 235 627 7899270 7898878 2.870000e-117 433.0
10 TraesCS1D01G015400 chr1D 87.697 317 30 4 1417 1727 7208145 7208458 1.370000e-95 361.0
11 TraesCS1D01G015400 chr1D 87.697 317 30 4 314 627 7209248 7209558 1.370000e-95 361.0
12 TraesCS1D01G015400 chr1D 84.091 352 42 7 1642 1986 7237912 7238256 1.390000e-85 327.0
13 TraesCS1D01G015400 chr1D 85.350 157 15 5 4838 4988 7379405 7379559 6.950000e-34 156.0
14 TraesCS1D01G015400 chr1A 89.785 3250 234 43 1417 4621 9358004 9354808 0.000000e+00 4072.0
15 TraesCS1D01G015400 chr1A 86.505 1608 194 12 2513 4113 9550762 9549171 0.000000e+00 1746.0
16 TraesCS1D01G015400 chr1A 85.565 859 92 18 1417 2260 9551784 9550943 0.000000e+00 870.0
17 TraesCS1D01G015400 chr1A 86.022 558 60 11 77 627 9358240 9357694 2.690000e-162 582.0
18 TraesCS1D01G015400 chr1A 84.281 598 65 12 160 751 9358870 9358296 1.630000e-154 556.0
19 TraesCS1D01G015400 chr1A 83.734 541 58 19 105 627 9551999 9551471 7.810000e-133 484.0
20 TraesCS1D01G015400 chr1A 88.919 370 21 3 4615 4984 9354754 9354405 6.170000e-119 438.0
21 TraesCS1D01G015400 chr1A 90.119 253 23 2 785 1037 9358306 9358056 1.390000e-85 327.0
22 TraesCS1D01G015400 chr1A 94.444 198 8 3 4988 5184 9354369 9354174 8.440000e-78 302.0
23 TraesCS1D01G015400 chr1A 84.286 140 18 2 689 827 9358240 9358104 3.260000e-27 134.0
24 TraesCS1D01G015400 chr1A 95.455 44 2 0 4806 4849 9345175 9345132 2.590000e-08 71.3
25 TraesCS1D01G015400 chr1B 90.773 1203 102 6 2916 4113 10080905 10079707 0.000000e+00 1598.0
26 TraesCS1D01G015400 chr1B 90.456 1184 105 5 2916 4096 10068904 10067726 0.000000e+00 1554.0
27 TraesCS1D01G015400 chr1B 89.644 1236 104 15 2916 4140 9598397 9599619 0.000000e+00 1552.0
28 TraesCS1D01G015400 chr1B 88.013 901 88 13 1417 2304 9597191 9598084 0.000000e+00 1048.0
29 TraesCS1D01G015400 chr1B 85.113 927 97 17 1417 2304 10082145 10081221 0.000000e+00 909.0
30 TraesCS1D01G015400 chr1B 84.048 583 73 11 51 627 10070468 10069900 1.270000e-150 544.0
31 TraesCS1D01G015400 chr1B 84.670 561 66 11 73 627 10082381 10081835 4.570000e-150 542.0
32 TraesCS1D01G015400 chr1B 90.704 398 37 0 1417 1814 10070210 10069813 9.890000e-147 531.0
33 TraesCS1D01G015400 chr1B 84.449 508 64 9 124 627 9597005 9597501 2.170000e-133 486.0
34 TraesCS1D01G015400 chr1B 85.287 401 37 14 627 1013 10082932 10082540 1.350000e-105 394.0
35 TraesCS1D01G015400 chr1B 83.019 265 43 2 2582 2844 9598112 9598376 6.710000e-59 239.0
36 TraesCS1D01G015400 chr2D 80.978 1104 196 10 2921 4023 617072795 617071705 0.000000e+00 863.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G015400 chr1D 7207832 7213018 5186 False 2401.250000 6964 93.848500 1 5187 4 chr1D.!!$F3 5186
1 TraesCS1D01G015400 chr1D 7351453 7354160 2707 False 1321.000000 1938 85.344500 1419 4058 2 chr1D.!!$F4 2639
2 TraesCS1D01G015400 chr1D 7874433 7876996 2563 True 1002.000000 1650 87.751000 235 4149 3 chr1D.!!$R1 3914
3 TraesCS1D01G015400 chr1D 7896844 7899270 2426 True 988.666667 1581 88.139000 235 4067 3 chr1D.!!$R2 3832
4 TraesCS1D01G015400 chr1A 9549171 9551999 2828 True 1033.333333 1746 85.268000 105 4113 3 chr1A.!!$R3 4008
5 TraesCS1D01G015400 chr1A 9354174 9358870 4696 True 915.857143 4072 88.265143 77 5184 7 chr1A.!!$R2 5107
6 TraesCS1D01G015400 chr1B 10067726 10070468 2742 True 876.333333 1554 88.402667 51 4096 3 chr1B.!!$R1 4045
7 TraesCS1D01G015400 chr1B 10079707 10082932 3225 True 860.750000 1598 86.460750 73 4113 4 chr1B.!!$R2 4040
8 TraesCS1D01G015400 chr1B 9597005 9599619 2614 False 831.250000 1552 86.281250 124 4140 4 chr1B.!!$F1 4016
9 TraesCS1D01G015400 chr2D 617071705 617072795 1090 True 863.000000 863 80.978000 2921 4023 1 chr2D.!!$R1 1102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.180171 TTATCATGGCACGGGACAGG 59.820 55.000 0.00 0.0 33.72 4.00 F
133 134 0.689623 CTTCAAGCCCTGAGTGGTCT 59.310 55.000 0.00 0.0 34.81 3.85 F
138 139 0.846693 AGCCCTGAGTGGTCTTTTGT 59.153 50.000 0.00 0.0 0.00 2.83 F
373 374 0.898326 GGGGAACTCCGGTGCATTTT 60.898 55.000 0.00 0.0 36.71 1.82 F
2079 2483 0.313672 GTTTGTTCCTGATTGGCGCA 59.686 50.000 10.83 0.0 35.26 6.09 F
2246 2662 1.003696 CCTCTGGTTCAGTTTCCTCCC 59.996 57.143 0.00 0.0 32.61 4.30 F
3156 3792 1.201429 AGGGTGTGCTACTTCCAGGG 61.201 60.000 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1915 0.888619 TGTCTCGGAGATGTCCACAC 59.111 55.000 11.46 2.55 44.18 3.82 R
2064 2468 1.064060 GTGTATGCGCCAATCAGGAAC 59.936 52.381 4.18 0.00 41.22 3.62 R
2065 2469 1.339535 TGTGTATGCGCCAATCAGGAA 60.340 47.619 4.18 0.00 41.22 3.36 R
2225 2641 1.003696 GGAGGAAACTGAACCAGAGGG 59.996 57.143 0.45 0.00 44.43 4.30 R
2914 3550 1.002468 GCACAGTACTGCACAACAAGG 60.002 52.381 22.90 2.84 37.11 3.61 R
3754 4390 1.679898 CTTCTTCCCGGGTCAGCTT 59.320 57.895 22.86 0.00 0.00 3.74 R
4540 5192 1.133790 GCCTGGAATGATGTTGCTGTC 59.866 52.381 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.871080 CGAACTTGCTTCAGTCCAGT 58.129 50.000 0.00 0.00 0.00 4.00
22 23 2.147150 GAACTTGCTTCAGTCCAGTCC 58.853 52.381 0.00 0.00 0.00 3.85
23 24 0.398318 ACTTGCTTCAGTCCAGTCCC 59.602 55.000 0.00 0.00 0.00 4.46
24 25 0.689623 CTTGCTTCAGTCCAGTCCCT 59.310 55.000 0.00 0.00 0.00 4.20
25 26 1.072965 CTTGCTTCAGTCCAGTCCCTT 59.927 52.381 0.00 0.00 0.00 3.95
26 27 0.397941 TGCTTCAGTCCAGTCCCTTG 59.602 55.000 0.00 0.00 0.00 3.61
27 28 0.398318 GCTTCAGTCCAGTCCCTTGT 59.602 55.000 0.00 0.00 0.00 3.16
28 29 1.202818 GCTTCAGTCCAGTCCCTTGTT 60.203 52.381 0.00 0.00 0.00 2.83
29 30 2.038557 GCTTCAGTCCAGTCCCTTGTTA 59.961 50.000 0.00 0.00 0.00 2.41
30 31 3.665190 CTTCAGTCCAGTCCCTTGTTAC 58.335 50.000 0.00 0.00 0.00 2.50
31 32 2.684943 TCAGTCCAGTCCCTTGTTACA 58.315 47.619 0.00 0.00 0.00 2.41
32 33 3.248024 TCAGTCCAGTCCCTTGTTACAT 58.752 45.455 0.00 0.00 0.00 2.29
33 34 3.007940 TCAGTCCAGTCCCTTGTTACATG 59.992 47.826 0.00 0.00 0.00 3.21
34 35 3.007940 CAGTCCAGTCCCTTGTTACATGA 59.992 47.826 0.00 0.00 0.00 3.07
35 36 3.650942 AGTCCAGTCCCTTGTTACATGAA 59.349 43.478 0.00 0.00 0.00 2.57
36 37 4.289672 AGTCCAGTCCCTTGTTACATGAAT 59.710 41.667 0.00 0.00 0.00 2.57
37 38 5.487488 AGTCCAGTCCCTTGTTACATGAATA 59.513 40.000 0.00 0.00 0.00 1.75
38 39 6.012858 AGTCCAGTCCCTTGTTACATGAATAA 60.013 38.462 0.00 0.00 0.00 1.40
39 40 6.828785 GTCCAGTCCCTTGTTACATGAATAAT 59.171 38.462 0.00 0.00 0.00 1.28
40 41 7.990886 GTCCAGTCCCTTGTTACATGAATAATA 59.009 37.037 0.00 0.00 0.00 0.98
41 42 8.553153 TCCAGTCCCTTGTTACATGAATAATAA 58.447 33.333 0.00 0.00 0.00 1.40
42 43 9.184523 CCAGTCCCTTGTTACATGAATAATAAA 57.815 33.333 0.00 0.00 0.00 1.40
60 61 9.950680 AATAATAAATACATGCGGAAGTTCTTG 57.049 29.630 2.25 0.00 0.00 3.02
64 65 9.772973 ATAAATACATGCGGAAGTTCTTGTATA 57.227 29.630 15.23 7.26 0.00 1.47
65 66 7.478520 AATACATGCGGAAGTTCTTGTATAC 57.521 36.000 15.23 0.00 0.00 1.47
67 68 4.870426 ACATGCGGAAGTTCTTGTATACTG 59.130 41.667 4.17 0.00 0.00 2.74
92 93 4.600692 TTGTCATCTCTGGAGAAAACGA 57.399 40.909 4.34 3.65 41.36 3.85
93 94 4.600692 TGTCATCTCTGGAGAAAACGAA 57.399 40.909 4.34 0.00 41.36 3.85
94 95 5.152623 TGTCATCTCTGGAGAAAACGAAT 57.847 39.130 4.34 0.00 41.36 3.34
95 96 5.551233 TGTCATCTCTGGAGAAAACGAATT 58.449 37.500 4.34 0.00 41.36 2.17
96 97 6.697395 TGTCATCTCTGGAGAAAACGAATTA 58.303 36.000 4.34 0.00 41.36 1.40
97 98 7.331026 TGTCATCTCTGGAGAAAACGAATTAT 58.669 34.615 4.34 0.00 41.36 1.28
98 99 7.492669 TGTCATCTCTGGAGAAAACGAATTATC 59.507 37.037 4.34 0.00 41.36 1.75
99 100 7.492669 GTCATCTCTGGAGAAAACGAATTATCA 59.507 37.037 4.34 0.00 41.36 2.15
100 101 8.206867 TCATCTCTGGAGAAAACGAATTATCAT 58.793 33.333 4.34 0.00 41.36 2.45
101 102 7.776933 TCTCTGGAGAAAACGAATTATCATG 57.223 36.000 0.00 0.00 33.91 3.07
102 103 6.763135 TCTCTGGAGAAAACGAATTATCATGG 59.237 38.462 0.00 0.00 33.91 3.66
103 104 5.296780 TCTGGAGAAAACGAATTATCATGGC 59.703 40.000 0.00 0.00 0.00 4.40
104 105 4.946772 TGGAGAAAACGAATTATCATGGCA 59.053 37.500 0.00 0.00 0.00 4.92
105 106 5.163663 TGGAGAAAACGAATTATCATGGCAC 60.164 40.000 0.00 0.00 0.00 5.01
106 107 4.908736 AGAAAACGAATTATCATGGCACG 58.091 39.130 0.00 0.00 0.00 5.34
107 108 3.691049 AAACGAATTATCATGGCACGG 57.309 42.857 0.00 0.00 0.00 4.94
108 109 1.593196 ACGAATTATCATGGCACGGG 58.407 50.000 0.00 0.00 0.00 5.28
109 110 1.140052 ACGAATTATCATGGCACGGGA 59.860 47.619 0.00 0.00 0.00 5.14
110 111 1.531149 CGAATTATCATGGCACGGGAC 59.469 52.381 0.00 0.00 0.00 4.46
111 112 2.571212 GAATTATCATGGCACGGGACA 58.429 47.619 0.00 0.00 35.65 4.02
112 113 2.260844 ATTATCATGGCACGGGACAG 57.739 50.000 0.00 0.00 33.72 3.51
113 114 0.180171 TTATCATGGCACGGGACAGG 59.820 55.000 0.00 0.00 33.72 4.00
114 115 2.324014 TATCATGGCACGGGACAGGC 62.324 60.000 0.00 0.00 33.72 4.85
115 116 4.415150 CATGGCACGGGACAGGCT 62.415 66.667 0.00 0.00 33.72 4.58
116 117 3.650950 ATGGCACGGGACAGGCTT 61.651 61.111 0.00 0.00 33.72 4.35
117 118 3.628646 ATGGCACGGGACAGGCTTC 62.629 63.158 0.00 0.00 33.72 3.86
118 119 4.329545 GGCACGGGACAGGCTTCA 62.330 66.667 0.00 0.00 0.00 3.02
119 120 2.281484 GCACGGGACAGGCTTCAA 60.281 61.111 0.00 0.00 0.00 2.69
120 121 2.328099 GCACGGGACAGGCTTCAAG 61.328 63.158 0.00 0.00 0.00 3.02
121 122 2.032681 ACGGGACAGGCTTCAAGC 59.967 61.111 0.00 0.00 41.46 4.01
130 131 3.993535 GCTTCAAGCCCTGAGTGG 58.006 61.111 0.00 0.00 34.48 4.00
131 132 1.073897 GCTTCAAGCCCTGAGTGGT 59.926 57.895 0.00 0.00 34.48 4.16
132 133 0.957888 GCTTCAAGCCCTGAGTGGTC 60.958 60.000 0.00 0.00 34.48 4.02
133 134 0.689623 CTTCAAGCCCTGAGTGGTCT 59.310 55.000 0.00 0.00 34.81 3.85
134 135 1.072965 CTTCAAGCCCTGAGTGGTCTT 59.927 52.381 0.00 0.00 34.81 3.01
135 136 1.140312 TCAAGCCCTGAGTGGTCTTT 58.860 50.000 0.00 0.00 0.00 2.52
136 137 1.494721 TCAAGCCCTGAGTGGTCTTTT 59.505 47.619 0.00 0.00 0.00 2.27
137 138 1.610522 CAAGCCCTGAGTGGTCTTTTG 59.389 52.381 0.00 0.00 0.00 2.44
138 139 0.846693 AGCCCTGAGTGGTCTTTTGT 59.153 50.000 0.00 0.00 0.00 2.83
139 140 1.215423 AGCCCTGAGTGGTCTTTTGTT 59.785 47.619 0.00 0.00 0.00 2.83
140 141 1.609072 GCCCTGAGTGGTCTTTTGTTC 59.391 52.381 0.00 0.00 0.00 3.18
141 142 2.230660 CCCTGAGTGGTCTTTTGTTCC 58.769 52.381 0.00 0.00 0.00 3.62
142 143 2.158608 CCCTGAGTGGTCTTTTGTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
143 144 3.072476 CCCTGAGTGGTCTTTTGTTCCTA 59.928 47.826 0.00 0.00 0.00 2.94
144 145 4.319177 CCTGAGTGGTCTTTTGTTCCTAG 58.681 47.826 0.00 0.00 0.00 3.02
145 146 3.740115 TGAGTGGTCTTTTGTTCCTAGC 58.260 45.455 0.00 0.00 0.00 3.42
146 147 3.391296 TGAGTGGTCTTTTGTTCCTAGCT 59.609 43.478 0.00 0.00 0.00 3.32
147 148 4.591498 TGAGTGGTCTTTTGTTCCTAGCTA 59.409 41.667 0.00 0.00 0.00 3.32
148 149 4.895961 AGTGGTCTTTTGTTCCTAGCTAC 58.104 43.478 0.00 0.00 0.00 3.58
149 150 4.347000 AGTGGTCTTTTGTTCCTAGCTACA 59.653 41.667 0.00 0.00 0.00 2.74
150 151 4.691216 GTGGTCTTTTGTTCCTAGCTACAG 59.309 45.833 0.00 0.00 0.00 2.74
151 152 4.591498 TGGTCTTTTGTTCCTAGCTACAGA 59.409 41.667 0.00 0.00 0.00 3.41
152 153 5.071250 TGGTCTTTTGTTCCTAGCTACAGAA 59.929 40.000 0.00 0.00 0.00 3.02
153 154 6.174049 GGTCTTTTGTTCCTAGCTACAGAAT 58.826 40.000 5.07 0.00 0.00 2.40
154 155 6.092807 GGTCTTTTGTTCCTAGCTACAGAATG 59.907 42.308 5.07 0.00 46.00 2.67
155 156 6.092807 GTCTTTTGTTCCTAGCTACAGAATGG 59.907 42.308 5.07 0.00 43.62 3.16
156 157 4.487714 TTGTTCCTAGCTACAGAATGGG 57.512 45.455 5.07 0.00 43.62 4.00
157 158 3.719871 TGTTCCTAGCTACAGAATGGGA 58.280 45.455 5.07 0.00 43.62 4.37
158 159 3.451178 TGTTCCTAGCTACAGAATGGGAC 59.549 47.826 5.07 2.57 43.62 4.46
176 177 6.240549 TGGGACAGAAATATCTTCCTCTTC 57.759 41.667 0.00 0.00 35.21 2.87
178 179 6.445139 TGGGACAGAAATATCTTCCTCTTCTT 59.555 38.462 0.00 0.00 35.21 2.52
179 180 7.037297 TGGGACAGAAATATCTTCCTCTTCTTT 60.037 37.037 0.00 0.00 35.21 2.52
180 181 7.831690 GGGACAGAAATATCTTCCTCTTCTTTT 59.168 37.037 0.00 0.00 35.21 2.27
181 182 8.672815 GGACAGAAATATCTTCCTCTTCTTTTG 58.327 37.037 0.00 0.00 33.57 2.44
182 183 9.225436 GACAGAAATATCTTCCTCTTCTTTTGT 57.775 33.333 0.00 0.00 32.03 2.83
183 184 9.007901 ACAGAAATATCTTCCTCTTCTTTTGTG 57.992 33.333 0.00 0.00 32.03 3.33
184 185 9.007901 CAGAAATATCTTCCTCTTCTTTTGTGT 57.992 33.333 0.00 0.00 32.03 3.72
187 188 7.913674 ATATCTTCCTCTTCTTTTGTGTGTC 57.086 36.000 0.00 0.00 0.00 3.67
188 189 4.119862 TCTTCCTCTTCTTTTGTGTGTCG 58.880 43.478 0.00 0.00 0.00 4.35
189 190 3.536956 TCCTCTTCTTTTGTGTGTCGT 57.463 42.857 0.00 0.00 0.00 4.34
190 191 3.454375 TCCTCTTCTTTTGTGTGTCGTC 58.546 45.455 0.00 0.00 0.00 4.20
197 198 6.588756 TCTTCTTTTGTGTGTCGTCATATACC 59.411 38.462 0.00 0.00 0.00 2.73
198 199 5.172934 TCTTTTGTGTGTCGTCATATACCC 58.827 41.667 0.00 0.00 0.00 3.69
199 200 4.538746 TTTGTGTGTCGTCATATACCCA 57.461 40.909 0.00 0.00 0.00 4.51
204 205 5.163353 TGTGTGTCGTCATATACCCATGAAT 60.163 40.000 0.00 0.00 36.71 2.57
208 209 5.989168 TGTCGTCATATACCCATGAATTCAC 59.011 40.000 11.07 0.00 36.71 3.18
221 222 5.521010 CCATGAATTCACAATCAATTTCCCG 59.479 40.000 11.07 0.00 0.00 5.14
222 223 5.070770 TGAATTCACAATCAATTTCCCGG 57.929 39.130 3.38 0.00 0.00 5.73
223 224 4.526262 TGAATTCACAATCAATTTCCCGGT 59.474 37.500 3.38 0.00 0.00 5.28
239 240 3.520317 TCCCGGTCACACTATTAATTGGT 59.480 43.478 0.00 0.00 0.00 3.67
241 242 5.367352 TCCCGGTCACACTATTAATTGGTAT 59.633 40.000 0.00 0.00 0.00 2.73
268 269 5.159925 CAGCTGGATATGATCAACTAGTCG 58.840 45.833 5.57 0.00 0.00 4.18
272 273 5.714047 TGGATATGATCAACTAGTCGATGC 58.286 41.667 0.00 0.00 0.00 3.91
283 284 2.108976 TCGATGCCGATCCCTTGC 59.891 61.111 0.00 0.00 40.30 4.01
285 286 2.512896 GATGCCGATCCCTTGCCT 59.487 61.111 0.00 0.00 0.00 4.75
286 287 1.895707 GATGCCGATCCCTTGCCTG 60.896 63.158 0.00 0.00 0.00 4.85
291 292 1.526887 CGATCCCTTGCCTGCCTTA 59.473 57.895 0.00 0.00 0.00 2.69
308 309 6.295123 CCTGCCTTAGTACTCTTAACAGAACA 60.295 42.308 0.00 0.00 0.00 3.18
309 310 6.453092 TGCCTTAGTACTCTTAACAGAACAC 58.547 40.000 0.00 0.00 0.00 3.32
342 343 2.106566 AGTCCCTAGTGCATCTGTGAG 58.893 52.381 0.00 0.00 0.00 3.51
343 344 2.103373 GTCCCTAGTGCATCTGTGAGA 58.897 52.381 0.00 0.00 0.00 3.27
344 345 2.497675 GTCCCTAGTGCATCTGTGAGAA 59.502 50.000 0.00 0.00 0.00 2.87
351 352 3.887716 AGTGCATCTGTGAGAAAGCTTTT 59.112 39.130 14.05 3.35 32.65 2.27
352 353 3.979495 GTGCATCTGTGAGAAAGCTTTTG 59.021 43.478 14.05 6.03 32.65 2.44
361 362 2.959030 GAGAAAGCTTTTGTGGGGAACT 59.041 45.455 14.05 1.89 0.00 3.01
363 364 1.704641 AAGCTTTTGTGGGGAACTCC 58.295 50.000 0.00 0.00 0.00 3.85
373 374 0.898326 GGGGAACTCCGGTGCATTTT 60.898 55.000 0.00 0.00 36.71 1.82
386 387 6.201425 TCCGGTGCATTTTATCGTTCTATTAC 59.799 38.462 0.00 0.00 0.00 1.89
388 389 6.565247 CGGTGCATTTTATCGTTCTATTACCC 60.565 42.308 0.00 0.00 0.00 3.69
391 392 9.216117 GTGCATTTTATCGTTCTATTACCCTAT 57.784 33.333 0.00 0.00 0.00 2.57
399 400 7.224522 TCGTTCTATTACCCTATAAGCCTTC 57.775 40.000 0.00 0.00 0.00 3.46
412 413 2.022718 AGCCTTCACTGTCTTCTCCT 57.977 50.000 0.00 0.00 0.00 3.69
414 415 2.708325 AGCCTTCACTGTCTTCTCCTTT 59.292 45.455 0.00 0.00 0.00 3.11
419 420 4.487714 TCACTGTCTTCTCCTTTGTTGT 57.512 40.909 0.00 0.00 0.00 3.32
424 425 6.316390 CACTGTCTTCTCCTTTGTTGTAGTTT 59.684 38.462 0.00 0.00 0.00 2.66
486 487 1.681166 CCTTTCTCCTGTGGGCATCTG 60.681 57.143 0.00 0.00 0.00 2.90
534 538 1.086634 GTGATCCTCTTGAGTGCGGC 61.087 60.000 0.00 0.00 0.00 6.53
536 540 4.742201 TCCTCTTGAGTGCGGCGC 62.742 66.667 27.44 27.44 0.00 6.53
546 550 4.240103 TGCGGCGCTGGAGCATAT 62.240 61.111 33.26 0.00 42.21 1.78
554 558 1.235948 GCTGGAGCATATGAGCTGGC 61.236 60.000 6.97 0.92 46.75 4.85
558 562 1.476471 GGAGCATATGAGCTGGCTTGT 60.476 52.381 6.97 0.00 46.75 3.16
559 563 2.224378 GGAGCATATGAGCTGGCTTGTA 60.224 50.000 6.97 0.00 46.75 2.41
560 564 2.805099 GAGCATATGAGCTGGCTTGTAC 59.195 50.000 6.97 0.00 46.75 2.90
587 591 2.698855 AGCAAGGCTACGATTCACAT 57.301 45.000 0.00 0.00 36.99 3.21
588 592 2.555199 AGCAAGGCTACGATTCACATC 58.445 47.619 0.00 0.00 36.99 3.06
589 593 2.093500 AGCAAGGCTACGATTCACATCA 60.093 45.455 0.00 0.00 36.99 3.07
590 594 2.677836 GCAAGGCTACGATTCACATCAA 59.322 45.455 0.00 0.00 0.00 2.57
591 595 3.485877 GCAAGGCTACGATTCACATCAAC 60.486 47.826 0.00 0.00 0.00 3.18
592 596 3.610040 AGGCTACGATTCACATCAACA 57.390 42.857 0.00 0.00 0.00 3.33
593 597 3.262420 AGGCTACGATTCACATCAACAC 58.738 45.455 0.00 0.00 0.00 3.32
594 598 3.000041 GGCTACGATTCACATCAACACA 59.000 45.455 0.00 0.00 0.00 3.72
595 599 3.062639 GGCTACGATTCACATCAACACAG 59.937 47.826 0.00 0.00 0.00 3.66
596 600 3.062639 GCTACGATTCACATCAACACAGG 59.937 47.826 0.00 0.00 0.00 4.00
597 601 3.401033 ACGATTCACATCAACACAGGA 57.599 42.857 0.00 0.00 0.00 3.86
607 611 6.818142 TCACATCAACACAGGAACATACTATG 59.182 38.462 0.00 0.00 0.00 2.23
670 674 4.462508 TTTTGCATTGTGTGGAAGTTCA 57.537 36.364 5.01 0.00 39.44 3.18
692 696 7.311364 TCATGTATGTTGTCATTGTCATCTG 57.689 36.000 0.00 0.00 35.70 2.90
721 727 8.951614 AGAAAATGATTATCATGTCATGGGAT 57.048 30.769 12.90 2.90 37.15 3.85
736 750 3.121929 TGGGATAGAAGACTCCAAGCT 57.878 47.619 0.00 0.00 32.90 3.74
747 761 3.007398 AGACTCCAAGCTTGAATCGTCTT 59.993 43.478 28.05 13.09 0.00 3.01
755 769 3.007398 AGCTTGAATCGTCTTCTGTTCCT 59.993 43.478 0.00 0.00 0.00 3.36
772 786 2.398588 TCCTAGCTACACAATGGGAGG 58.601 52.381 0.00 0.00 0.00 4.30
801 815 1.394917 CTCATCTTCTTTTGCCCGTCG 59.605 52.381 0.00 0.00 0.00 5.12
859 875 4.141505 TGTCAGTGTGGAAAATCTCTGGAA 60.142 41.667 0.00 0.00 0.00 3.53
884 900 4.836125 AATGAATTATCATGTGACGGGC 57.164 40.909 0.00 0.00 45.60 6.13
922 1252 5.876357 ACTGGGTCTTTTGTTCATAGCTAA 58.124 37.500 0.00 0.00 0.00 3.09
924 1254 6.431234 ACTGGGTCTTTTGTTCATAGCTAAAG 59.569 38.462 0.00 0.00 32.67 1.85
1000 1338 7.214381 TGAAGTCATAATAAGTATCCCAACCG 58.786 38.462 0.00 0.00 0.00 4.44
1017 1355 5.300792 CCCAACCGCACTATTAATTGGTATT 59.699 40.000 0.00 0.00 35.79 1.89
1028 1366 9.338622 ACTATTAATTGGTATTTACAGCTGGAC 57.661 33.333 19.93 7.48 0.00 4.02
1037 1375 6.488006 GGTATTTACAGCTGGACATGATCAAT 59.512 38.462 19.93 6.83 0.00 2.57
1488 1826 5.109903 GTGCACTTCATCGTTCTATTACCT 58.890 41.667 10.32 0.00 0.00 3.08
1563 1904 1.348008 GGGAGGAGATGATGGGTGCA 61.348 60.000 0.00 0.00 0.00 4.57
1615 1956 4.388499 GCCTCCTTTCCGTCGGCA 62.388 66.667 6.34 0.00 40.41 5.69
1638 1979 1.476891 GTGATCCTCTTGAGTGCGGTA 59.523 52.381 0.00 0.00 0.00 4.02
1649 1990 4.071961 TGAGTGCGGTATTGAAGCATAT 57.928 40.909 0.00 0.00 43.17 1.78
1690 2031 3.693085 AGCAAGGCTACAATTCACATCAG 59.307 43.478 0.00 0.00 36.99 2.90
1781 2122 0.982852 ATACCAGTAGCAGCTGCCCA 60.983 55.000 34.39 20.47 43.38 5.36
1863 2258 2.817258 CCACCTGGCTTTCGTTATTTGA 59.183 45.455 0.00 0.00 0.00 2.69
1908 2303 6.127498 CATGTTTTGCTAATTGTTCACGAC 57.873 37.500 0.00 0.00 0.00 4.34
1928 2323 4.675565 CGACCAGTAACAGATAATAGTGCG 59.324 45.833 0.00 0.00 0.00 5.34
1983 2378 3.081061 TCACATGTTTATGTCTGGGTGC 58.919 45.455 0.00 0.00 45.53 5.01
1989 2384 4.098155 TGTTTATGTCTGGGTGCCTACTA 58.902 43.478 0.00 0.00 0.00 1.82
1991 2386 2.247699 ATGTCTGGGTGCCTACTACA 57.752 50.000 0.00 0.00 0.00 2.74
1993 2388 1.076513 TGTCTGGGTGCCTACTACAGA 59.923 52.381 0.00 0.00 37.95 3.41
1994 2389 2.292257 TGTCTGGGTGCCTACTACAGAT 60.292 50.000 0.00 0.00 40.29 2.90
1995 2390 3.053170 TGTCTGGGTGCCTACTACAGATA 60.053 47.826 0.00 0.00 40.29 1.98
2009 2404 4.630069 ACTACAGATAATTGTGCGGTTGAC 59.370 41.667 0.00 0.00 32.56 3.18
2010 2405 2.747446 ACAGATAATTGTGCGGTTGACC 59.253 45.455 0.00 0.00 0.00 4.02
2011 2406 3.009723 CAGATAATTGTGCGGTTGACCT 58.990 45.455 0.00 0.00 0.00 3.85
2042 2437 4.473444 CTTATTGTGGATACCTGGCCAAT 58.527 43.478 7.01 0.00 35.63 3.16
2062 2466 6.405397 GCCAATATTCCATTTGGTAACGAGTT 60.405 38.462 3.85 0.00 43.54 3.01
2064 2468 7.487829 CCAATATTCCATTTGGTAACGAGTTTG 59.512 37.037 0.00 0.00 38.05 2.93
2065 2469 7.696992 ATATTCCATTTGGTAACGAGTTTGT 57.303 32.000 0.00 0.00 42.51 2.83
2078 2482 0.598065 AGTTTGTTCCTGATTGGCGC 59.402 50.000 0.00 0.00 35.26 6.53
2079 2483 0.313672 GTTTGTTCCTGATTGGCGCA 59.686 50.000 10.83 0.00 35.26 6.09
2084 2491 1.064060 GTTCCTGATTGGCGCATACAC 59.936 52.381 10.83 0.00 35.26 2.90
2115 2522 5.750547 AGTTATGCAGATATCACACAAGTCG 59.249 40.000 5.32 0.00 0.00 4.18
2224 2640 5.357878 GCCTCAACAATTCAATCAGGTGATA 59.642 40.000 0.00 0.00 33.73 2.15
2225 2641 6.678900 GCCTCAACAATTCAATCAGGTGATAC 60.679 42.308 0.00 0.00 33.73 2.24
2230 2646 5.192522 ACAATTCAATCAGGTGATACCCTCT 59.807 40.000 0.00 0.00 39.75 3.69
2231 2647 4.760530 TTCAATCAGGTGATACCCTCTG 57.239 45.455 0.00 0.00 39.75 3.35
2236 2652 2.187958 CAGGTGATACCCTCTGGTTCA 58.812 52.381 0.00 0.00 44.75 3.18
2237 2653 2.169352 CAGGTGATACCCTCTGGTTCAG 59.831 54.545 0.00 0.00 44.75 3.02
2246 2662 1.003696 CCTCTGGTTCAGTTTCCTCCC 59.996 57.143 0.00 0.00 32.61 4.30
2247 2663 1.981495 CTCTGGTTCAGTTTCCTCCCT 59.019 52.381 0.00 0.00 32.61 4.20
2263 2696 7.569599 TTCCTCCCTAATTTAGTTTCTCTGT 57.430 36.000 2.88 0.00 0.00 3.41
2285 2718 9.838339 TCTGTTCTCTACTTTTCTCAAGAATTT 57.162 29.630 0.00 0.00 33.54 1.82
2332 2824 1.656095 GTAGAGCACATTCACACTCGC 59.344 52.381 0.00 0.00 34.31 5.03
2339 2831 3.365868 GCACATTCACACTCGCCATTAAA 60.366 43.478 0.00 0.00 0.00 1.52
2390 2921 6.544038 AATTGCAGCAAAGGTTTGTTAATC 57.456 33.333 12.97 0.00 40.24 1.75
2394 2925 6.054295 TGCAGCAAAGGTTTGTTAATCAATT 58.946 32.000 0.00 0.00 40.24 2.32
2395 2926 6.018098 TGCAGCAAAGGTTTGTTAATCAATTG 60.018 34.615 0.00 0.00 40.24 2.32
2396 2927 6.365050 CAGCAAAGGTTTGTTAATCAATTGC 58.635 36.000 0.00 13.24 43.12 3.56
2397 2928 6.018098 CAGCAAAGGTTTGTTAATCAATTGCA 60.018 34.615 18.31 0.00 44.19 4.08
2398 2929 6.018016 AGCAAAGGTTTGTTAATCAATTGCAC 60.018 34.615 18.31 0.00 44.19 4.57
2399 2930 6.018016 GCAAAGGTTTGTTAATCAATTGCACT 60.018 34.615 0.00 0.00 42.72 4.40
2413 2944 3.719268 TTGCACTACTCCATCCATGTT 57.281 42.857 0.00 0.00 0.00 2.71
2434 2965 2.292267 GGGCACAGGTCAGATTATGTG 58.708 52.381 7.80 7.80 44.58 3.21
2442 2973 7.912250 GCACAGGTCAGATTATGTGAAATTTAG 59.088 37.037 13.86 0.00 44.56 1.85
2479 3029 8.067784 CCAAAATACAACGCATAGTCGAATTAT 58.932 33.333 0.00 0.00 0.00 1.28
2486 3036 5.168569 ACGCATAGTCGAATTATATGGTGG 58.831 41.667 0.00 0.00 0.00 4.61
2494 3044 4.055360 CGAATTATATGGTGGCGAAGTCA 58.945 43.478 0.00 0.00 43.93 3.41
2510 3071 4.612712 CGAAGTCAAACACTGTTGTTGTGT 60.613 41.667 0.00 0.00 45.69 3.72
2532 3093 7.039434 TGTGTGCAAATGGGATTGAATTAGTAA 60.039 33.333 0.00 0.00 31.84 2.24
2534 3095 9.194972 TGTGCAAATGGGATTGAATTAGTAATA 57.805 29.630 0.00 0.00 31.84 0.98
2579 3140 3.009143 AGAACCGTGCTCCCTTCTAAATT 59.991 43.478 0.00 0.00 0.00 1.82
2658 3220 2.679837 GCATCGTGAATTGGACTCATGT 59.320 45.455 0.00 0.00 32.61 3.21
2696 3258 4.067896 AGTGCACTTCTTAGAATGTGTGG 58.932 43.478 15.25 2.16 33.44 4.17
2763 3397 6.480763 TGGTTGTTGTGACCATATTATCTGT 58.519 36.000 0.00 0.00 42.06 3.41
2773 3407 9.224267 GTGACCATATTATCTGTGATTGCTATT 57.776 33.333 0.00 0.00 0.00 1.73
2812 3448 4.454504 GGTACGTGGGAATTATATGCCTTG 59.545 45.833 0.00 0.00 0.00 3.61
2832 3468 7.772757 TGCCTTGTACTTCCAAAATTGAATTTT 59.227 29.630 9.92 9.92 42.81 1.82
2853 3489 9.893634 AATTTTCATGCTTTTAATCATCATGGA 57.106 25.926 0.00 0.00 36.22 3.41
2871 3507 5.882000 TCATGGACACAATCTTGGACATAAG 59.118 40.000 0.00 0.00 0.00 1.73
2873 3509 4.263462 TGGACACAATCTTGGACATAAGCT 60.263 41.667 0.00 0.00 0.00 3.74
2902 3538 6.514541 GCCTACACGTTCATCTAGCTTACATA 60.515 42.308 0.00 0.00 0.00 2.29
2903 3539 7.594714 CCTACACGTTCATCTAGCTTACATAT 58.405 38.462 0.00 0.00 0.00 1.78
2908 3544 8.854312 CACGTTCATCTAGCTTACATATGTATG 58.146 37.037 16.16 18.09 39.55 2.39
3040 3676 5.312079 AGAAGTTCCTCAGGATTCAACAAG 58.688 41.667 9.35 0.00 0.00 3.16
3051 3687 2.380064 TTCAACAAGTGATTGGCCCT 57.620 45.000 0.00 0.00 35.70 5.19
3156 3792 1.201429 AGGGTGTGCTACTTCCAGGG 61.201 60.000 0.00 0.00 0.00 4.45
3160 3796 2.116238 GTGTGCTACTTCCAGGGGATA 58.884 52.381 0.00 0.00 0.00 2.59
3390 4026 4.771127 TGGGACAAGCTCAACGAC 57.229 55.556 0.00 0.00 31.92 4.34
3489 4125 1.645034 CGCACAACATCCTTCTCGAT 58.355 50.000 0.00 0.00 0.00 3.59
3648 4284 6.143118 GTGTCATATCTAGCAAATCTGACGTC 59.857 42.308 9.11 9.11 34.62 4.34
3670 4306 2.437359 GCTTCGGGATGCTGCTGT 60.437 61.111 0.00 0.00 0.00 4.40
3754 4390 2.263227 CGTCATGGGTGTACGCCA 59.737 61.111 26.20 13.13 0.00 5.69
3781 4417 4.840005 GGGAAGAAGCGGGCGAGG 62.840 72.222 0.00 0.00 0.00 4.63
3813 4452 3.422303 GCTGCCGACATGCACGAA 61.422 61.111 13.20 2.44 36.04 3.85
4122 4770 7.327214 TCTGCACTTATATGTATGTGTTCACA 58.673 34.615 14.31 8.09 37.93 3.58
4201 4849 2.622942 TGCAAACTGTCATCCTTGTTCC 59.377 45.455 0.00 0.00 0.00 3.62
4237 4885 3.490933 GGAGAAACAGGGCAACTTCAAAC 60.491 47.826 0.00 0.00 0.00 2.93
4273 4921 5.600696 ACAGGGCAACTTCAAATTAGTTTG 58.399 37.500 4.40 4.40 44.81 2.93
4304 4952 9.778993 CTTACATCCATCTAATTTGTTTGTCTG 57.221 33.333 0.00 0.00 0.00 3.51
4331 4979 9.725019 TTCAGTACTGTTGATACAAATTCTGAT 57.275 29.630 21.99 0.00 32.93 2.90
4332 4980 9.725019 TCAGTACTGTTGATACAAATTCTGATT 57.275 29.630 21.99 0.00 32.92 2.57
4386 5036 2.357952 ACAAGAACGCCTTTTCCTTGTC 59.642 45.455 0.00 0.00 31.42 3.18
4390 5040 2.332654 CGCCTTTTCCTTGTCGGGG 61.333 63.158 0.00 0.00 0.00 5.73
4417 5067 7.719483 TCATTTTTGAGAGAAATTTGTGCTCT 58.281 30.769 7.43 7.43 41.42 4.09
4480 5131 6.316140 GCAGTAACAAACATGATGGATGTAGA 59.684 38.462 0.00 0.00 45.12 2.59
4483 5134 9.466497 AGTAACAAACATGATGGATGTAGATTT 57.534 29.630 0.00 0.00 45.12 2.17
4541 5193 9.672673 TTTGTTTTTGGATAAAGATTTGGTTGA 57.327 25.926 0.00 0.00 0.00 3.18
4597 5249 5.163519 GCCAAAGAAATTAGATAGGCAGCAA 60.164 40.000 0.00 0.00 40.50 3.91
4613 5265 2.423202 CAAAAACTGCACGCATCGG 58.577 52.632 0.00 0.00 0.00 4.18
4621 5333 1.301677 TGCACGCATCGGCATTGTTA 61.302 50.000 0.00 0.00 41.24 2.41
4633 5345 3.365969 CGGCATTGTTACCTTCAAGAACC 60.366 47.826 0.00 0.00 0.00 3.62
4634 5346 3.572255 GGCATTGTTACCTTCAAGAACCA 59.428 43.478 0.00 0.00 0.00 3.67
4658 5370 6.310956 CAGAGCAGAGTCTGATTTTCTTAGTG 59.689 42.308 24.55 6.36 46.02 2.74
4666 5378 8.034058 AGTCTGATTTTCTTAGTGTTACATGC 57.966 34.615 0.00 0.00 0.00 4.06
4685 5397 1.544314 GCCATCTTCCATCCTAGGCAC 60.544 57.143 2.96 0.00 40.29 5.01
4699 5411 5.313712 TCCTAGGCACGAAATTCTTTTTCT 58.686 37.500 2.96 0.00 0.00 2.52
4701 5413 5.858581 CCTAGGCACGAAATTCTTTTTCTTG 59.141 40.000 0.00 1.50 32.79 3.02
4702 5414 5.262588 AGGCACGAAATTCTTTTTCTTGT 57.737 34.783 0.00 0.00 32.40 3.16
4703 5415 5.660460 AGGCACGAAATTCTTTTTCTTGTT 58.340 33.333 0.00 0.00 32.40 2.83
4704 5416 5.748630 AGGCACGAAATTCTTTTTCTTGTTC 59.251 36.000 0.00 1.59 32.40 3.18
4705 5417 5.748630 GGCACGAAATTCTTTTTCTTGTTCT 59.251 36.000 0.00 0.00 32.40 3.01
4706 5418 6.915843 GGCACGAAATTCTTTTTCTTGTTCTA 59.084 34.615 0.00 0.00 32.40 2.10
4707 5419 7.113544 GGCACGAAATTCTTTTTCTTGTTCTAG 59.886 37.037 0.00 0.00 32.40 2.43
4708 5420 7.644157 GCACGAAATTCTTTTTCTTGTTCTAGT 59.356 33.333 0.00 0.00 32.40 2.57
4709 5421 8.947940 CACGAAATTCTTTTTCTTGTTCTAGTG 58.052 33.333 0.00 0.00 0.00 2.74
4710 5422 8.129211 ACGAAATTCTTTTTCTTGTTCTAGTGG 58.871 33.333 0.00 0.00 0.00 4.00
4711 5423 8.129211 CGAAATTCTTTTTCTTGTTCTAGTGGT 58.871 33.333 0.00 0.00 0.00 4.16
4712 5424 9.803315 GAAATTCTTTTTCTTGTTCTAGTGGTT 57.197 29.630 0.00 0.00 0.00 3.67
4713 5425 9.586435 AAATTCTTTTTCTTGTTCTAGTGGTTG 57.414 29.630 0.00 0.00 0.00 3.77
4714 5426 6.131544 TCTTTTTCTTGTTCTAGTGGTTGC 57.868 37.500 0.00 0.00 0.00 4.17
4715 5427 5.650266 TCTTTTTCTTGTTCTAGTGGTTGCA 59.350 36.000 0.00 0.00 0.00 4.08
4716 5428 5.906113 TTTTCTTGTTCTAGTGGTTGCAA 57.094 34.783 0.00 0.00 0.00 4.08
4717 5429 6.463995 TTTTCTTGTTCTAGTGGTTGCAAT 57.536 33.333 0.59 0.00 0.00 3.56
4718 5430 5.689383 TTCTTGTTCTAGTGGTTGCAATC 57.311 39.130 0.59 1.16 0.00 2.67
4719 5431 4.973168 TCTTGTTCTAGTGGTTGCAATCT 58.027 39.130 11.73 8.84 0.00 2.40
4720 5432 6.109156 TCTTGTTCTAGTGGTTGCAATCTA 57.891 37.500 11.73 9.48 0.00 1.98
4791 5503 4.431131 ACATTGCCCTCCCCTGCG 62.431 66.667 0.00 0.00 0.00 5.18
4800 5512 2.119611 TCCCCTGCGTGGAGAAGA 59.880 61.111 0.00 0.00 38.35 2.87
4824 5536 0.322975 TCTTCTGCTCCAACTCCAGC 59.677 55.000 0.00 0.00 36.08 4.85
4825 5537 0.035881 CTTCTGCTCCAACTCCAGCA 59.964 55.000 0.00 0.00 43.49 4.41
4880 5592 2.072298 GTCCTCTGCTTTGTACTGCTG 58.928 52.381 0.00 0.98 0.00 4.41
4883 5595 0.108396 TCTGCTTTGTACTGCTGGCA 59.892 50.000 0.00 0.00 0.00 4.92
4906 5618 1.298859 GGCAGAGCCTGTACAAACCG 61.299 60.000 0.00 0.00 46.69 4.44
4939 5651 4.566488 CCCAGTCCTCTGCTTTCTGTTATT 60.566 45.833 0.00 0.00 40.09 1.40
4949 5661 6.874134 TCTGCTTTCTGTTATTAGAGGAACAC 59.126 38.462 0.00 0.00 32.31 3.32
5000 5744 5.825507 AGTATACAATTCCGGTCGAAGTAC 58.174 41.667 0.00 0.00 32.78 2.73
5114 5859 8.203485 AGCAAATATTTTTCAGACAAAACAGGA 58.797 29.630 0.00 0.00 0.00 3.86
5117 5862 8.887036 AATATTTTTCAGACAAAACAGGAACC 57.113 30.769 0.00 0.00 0.00 3.62
5166 5911 4.147321 AGCATCACTGAGAAACCAACATT 58.853 39.130 0.00 0.00 0.00 2.71
5184 5929 6.457392 CCAACATTCATAGACAAATGAGACCG 60.457 42.308 2.36 0.00 37.20 4.79
5185 5930 4.572389 ACATTCATAGACAAATGAGACCGC 59.428 41.667 2.36 0.00 37.20 5.68
5186 5931 3.179443 TCATAGACAAATGAGACCGCC 57.821 47.619 0.00 0.00 32.18 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.514691 CTGGACTGAAGCAAGTTCGC 59.485 55.000 0.00 0.00 38.09 4.70
5 6 0.689623 AGGGACTGGACTGAAGCAAG 59.310 55.000 0.00 0.00 37.18 4.01
6 7 1.140312 AAGGGACTGGACTGAAGCAA 58.860 50.000 0.00 0.00 40.86 3.91
7 8 0.397941 CAAGGGACTGGACTGAAGCA 59.602 55.000 0.00 0.00 40.86 3.91
9 10 2.938956 AACAAGGGACTGGACTGAAG 57.061 50.000 0.00 0.00 40.86 3.02
10 11 3.042682 TGTAACAAGGGACTGGACTGAA 58.957 45.455 0.00 0.00 40.86 3.02
11 12 2.684943 TGTAACAAGGGACTGGACTGA 58.315 47.619 0.00 0.00 40.86 3.41
12 13 3.007940 TCATGTAACAAGGGACTGGACTG 59.992 47.826 0.00 0.00 40.86 3.51
13 14 3.248024 TCATGTAACAAGGGACTGGACT 58.752 45.455 0.00 0.00 40.86 3.85
14 15 3.695830 TCATGTAACAAGGGACTGGAC 57.304 47.619 0.00 0.00 40.86 4.02
15 16 4.927267 ATTCATGTAACAAGGGACTGGA 57.073 40.909 0.00 0.00 40.86 3.86
29 30 9.066892 ACTTCCGCATGTATTTATTATTCATGT 57.933 29.630 0.00 0.00 38.35 3.21
30 31 9.897744 AACTTCCGCATGTATTTATTATTCATG 57.102 29.630 0.00 0.00 38.87 3.07
32 33 9.337396 AGAACTTCCGCATGTATTTATTATTCA 57.663 29.630 0.00 0.00 0.00 2.57
34 35 9.950680 CAAGAACTTCCGCATGTATTTATTATT 57.049 29.630 0.00 0.00 0.00 1.40
35 36 9.120538 ACAAGAACTTCCGCATGTATTTATTAT 57.879 29.630 0.00 0.00 0.00 1.28
36 37 8.500753 ACAAGAACTTCCGCATGTATTTATTA 57.499 30.769 0.00 0.00 0.00 0.98
37 38 7.391148 ACAAGAACTTCCGCATGTATTTATT 57.609 32.000 0.00 0.00 0.00 1.40
38 39 8.677148 ATACAAGAACTTCCGCATGTATTTAT 57.323 30.769 0.00 0.00 31.80 1.40
39 40 9.037737 GTATACAAGAACTTCCGCATGTATTTA 57.962 33.333 0.00 0.00 35.98 1.40
40 41 7.769044 AGTATACAAGAACTTCCGCATGTATTT 59.231 33.333 5.50 0.00 35.98 1.40
41 42 7.224753 CAGTATACAAGAACTTCCGCATGTATT 59.775 37.037 5.50 0.00 35.98 1.89
42 43 6.701841 CAGTATACAAGAACTTCCGCATGTAT 59.298 38.462 5.50 0.00 37.62 2.29
43 44 6.040247 CAGTATACAAGAACTTCCGCATGTA 58.960 40.000 5.50 0.00 0.00 2.29
44 45 4.870426 CAGTATACAAGAACTTCCGCATGT 59.130 41.667 5.50 0.00 0.00 3.21
45 46 4.870426 ACAGTATACAAGAACTTCCGCATG 59.130 41.667 5.50 0.00 0.00 4.06
46 47 5.086104 ACAGTATACAAGAACTTCCGCAT 57.914 39.130 5.50 0.00 0.00 4.73
47 48 4.021807 TGACAGTATACAAGAACTTCCGCA 60.022 41.667 5.50 0.00 0.00 5.69
48 49 4.491676 TGACAGTATACAAGAACTTCCGC 58.508 43.478 5.50 0.00 0.00 5.54
49 50 6.590292 ACAATGACAGTATACAAGAACTTCCG 59.410 38.462 5.50 0.00 0.00 4.30
60 61 7.013750 TCTCCAGAGATGACAATGACAGTATAC 59.986 40.741 0.00 0.00 31.41 1.47
64 65 4.092279 TCTCCAGAGATGACAATGACAGT 58.908 43.478 0.00 0.00 31.41 3.55
65 66 4.732672 TCTCCAGAGATGACAATGACAG 57.267 45.455 0.00 0.00 31.41 3.51
67 68 5.163913 CGTTTTCTCCAGAGATGACAATGAC 60.164 44.000 0.00 0.00 37.29 3.06
92 93 2.575532 CTGTCCCGTGCCATGATAATT 58.424 47.619 0.00 0.00 0.00 1.40
93 94 1.202806 CCTGTCCCGTGCCATGATAAT 60.203 52.381 0.00 0.00 0.00 1.28
94 95 0.180171 CCTGTCCCGTGCCATGATAA 59.820 55.000 0.00 0.00 0.00 1.75
95 96 1.829456 CCTGTCCCGTGCCATGATA 59.171 57.895 0.00 0.00 0.00 2.15
96 97 2.591753 CCTGTCCCGTGCCATGAT 59.408 61.111 0.00 0.00 0.00 2.45
97 98 4.408821 GCCTGTCCCGTGCCATGA 62.409 66.667 0.00 0.00 0.00 3.07
98 99 3.925630 AAGCCTGTCCCGTGCCATG 62.926 63.158 0.00 0.00 0.00 3.66
99 100 3.628646 GAAGCCTGTCCCGTGCCAT 62.629 63.158 0.00 0.00 0.00 4.40
100 101 4.329545 GAAGCCTGTCCCGTGCCA 62.330 66.667 0.00 0.00 0.00 4.92
101 102 3.842925 TTGAAGCCTGTCCCGTGCC 62.843 63.158 0.00 0.00 0.00 5.01
102 103 2.281484 TTGAAGCCTGTCCCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
103 104 2.328099 GCTTGAAGCCTGTCCCGTG 61.328 63.158 5.74 0.00 34.48 4.94
104 105 2.032681 GCTTGAAGCCTGTCCCGT 59.967 61.111 5.74 0.00 34.48 5.28
113 114 0.957888 GACCACTCAGGGCTTGAAGC 60.958 60.000 9.04 9.04 44.70 3.86
114 115 3.239861 GACCACTCAGGGCTTGAAG 57.760 57.895 0.00 0.00 44.70 3.02
121 122 2.158608 AGGAACAAAAGACCACTCAGGG 60.159 50.000 0.00 0.00 43.89 4.45
122 123 3.214696 AGGAACAAAAGACCACTCAGG 57.785 47.619 0.00 0.00 45.67 3.86
123 124 3.748568 GCTAGGAACAAAAGACCACTCAG 59.251 47.826 0.00 0.00 0.00 3.35
124 125 3.391296 AGCTAGGAACAAAAGACCACTCA 59.609 43.478 0.00 0.00 0.00 3.41
125 126 4.009370 AGCTAGGAACAAAAGACCACTC 57.991 45.455 0.00 0.00 0.00 3.51
126 127 4.347000 TGTAGCTAGGAACAAAAGACCACT 59.653 41.667 0.00 0.00 0.00 4.00
127 128 4.638304 TGTAGCTAGGAACAAAAGACCAC 58.362 43.478 0.00 0.00 0.00 4.16
128 129 4.591498 TCTGTAGCTAGGAACAAAAGACCA 59.409 41.667 0.00 0.00 0.00 4.02
129 130 5.148651 TCTGTAGCTAGGAACAAAAGACC 57.851 43.478 0.00 0.00 0.00 3.85
130 131 6.092807 CCATTCTGTAGCTAGGAACAAAAGAC 59.907 42.308 10.19 0.00 0.00 3.01
131 132 6.173339 CCATTCTGTAGCTAGGAACAAAAGA 58.827 40.000 10.19 0.00 0.00 2.52
132 133 5.355350 CCCATTCTGTAGCTAGGAACAAAAG 59.645 44.000 10.19 0.00 0.00 2.27
133 134 5.013704 TCCCATTCTGTAGCTAGGAACAAAA 59.986 40.000 10.19 0.00 0.00 2.44
134 135 4.534500 TCCCATTCTGTAGCTAGGAACAAA 59.466 41.667 10.19 0.00 0.00 2.83
135 136 4.081087 GTCCCATTCTGTAGCTAGGAACAA 60.081 45.833 10.19 0.00 0.00 2.83
136 137 3.451178 GTCCCATTCTGTAGCTAGGAACA 59.549 47.826 10.19 0.00 0.00 3.18
137 138 3.451178 TGTCCCATTCTGTAGCTAGGAAC 59.549 47.826 10.19 0.00 0.00 3.62
138 139 3.706594 CTGTCCCATTCTGTAGCTAGGAA 59.293 47.826 10.33 10.33 0.00 3.36
139 140 3.052869 TCTGTCCCATTCTGTAGCTAGGA 60.053 47.826 0.00 0.00 0.00 2.94
140 141 3.300388 TCTGTCCCATTCTGTAGCTAGG 58.700 50.000 0.00 0.00 0.00 3.02
141 142 5.344743 TTTCTGTCCCATTCTGTAGCTAG 57.655 43.478 0.00 0.00 0.00 3.42
142 143 5.957771 ATTTCTGTCCCATTCTGTAGCTA 57.042 39.130 0.00 0.00 0.00 3.32
143 144 4.851639 ATTTCTGTCCCATTCTGTAGCT 57.148 40.909 0.00 0.00 0.00 3.32
144 145 6.529220 AGATATTTCTGTCCCATTCTGTAGC 58.471 40.000 0.00 0.00 0.00 3.58
145 146 7.659390 GGAAGATATTTCTGTCCCATTCTGTAG 59.341 40.741 0.00 0.00 30.72 2.74
146 147 7.348274 AGGAAGATATTTCTGTCCCATTCTGTA 59.652 37.037 9.26 0.00 33.29 2.74
147 148 6.159398 AGGAAGATATTTCTGTCCCATTCTGT 59.841 38.462 9.26 0.00 33.29 3.41
148 149 6.599445 AGGAAGATATTTCTGTCCCATTCTG 58.401 40.000 9.26 0.00 33.29 3.02
149 150 6.619023 AGAGGAAGATATTTCTGTCCCATTCT 59.381 38.462 0.00 5.53 33.29 2.40
150 151 6.836242 AGAGGAAGATATTTCTGTCCCATTC 58.164 40.000 0.00 4.06 33.29 2.67
151 152 6.838401 AGAGGAAGATATTTCTGTCCCATT 57.162 37.500 0.00 0.00 33.29 3.16
152 153 6.619023 AGAAGAGGAAGATATTTCTGTCCCAT 59.381 38.462 0.00 0.46 33.29 4.00
153 154 5.966935 AGAAGAGGAAGATATTTCTGTCCCA 59.033 40.000 0.00 0.00 33.29 4.37
154 155 6.493189 AGAAGAGGAAGATATTTCTGTCCC 57.507 41.667 0.00 2.76 33.29 4.46
155 156 8.672815 CAAAAGAAGAGGAAGATATTTCTGTCC 58.327 37.037 0.00 6.39 33.15 4.02
156 157 9.225436 ACAAAAGAAGAGGAAGATATTTCTGTC 57.775 33.333 0.00 0.00 30.72 3.51
157 158 9.007901 CACAAAAGAAGAGGAAGATATTTCTGT 57.992 33.333 0.00 0.00 30.72 3.41
158 159 9.007901 ACACAAAAGAAGAGGAAGATATTTCTG 57.992 33.333 0.00 0.00 30.72 3.02
159 160 9.007901 CACACAAAAGAAGAGGAAGATATTTCT 57.992 33.333 0.00 0.00 0.00 2.52
160 161 8.787852 ACACACAAAAGAAGAGGAAGATATTTC 58.212 33.333 0.00 0.00 0.00 2.17
161 162 8.697507 ACACACAAAAGAAGAGGAAGATATTT 57.302 30.769 0.00 0.00 0.00 1.40
162 163 7.118390 CGACACACAAAAGAAGAGGAAGATATT 59.882 37.037 0.00 0.00 0.00 1.28
176 177 4.932799 TGGGTATATGACGACACACAAAAG 59.067 41.667 0.00 0.00 0.00 2.27
178 179 4.538746 TGGGTATATGACGACACACAAA 57.461 40.909 0.00 0.00 0.00 2.83
179 180 4.160626 TCATGGGTATATGACGACACACAA 59.839 41.667 0.00 0.00 30.14 3.33
180 181 3.702045 TCATGGGTATATGACGACACACA 59.298 43.478 0.00 0.00 30.14 3.72
181 182 4.316205 TCATGGGTATATGACGACACAC 57.684 45.455 0.00 0.00 30.14 3.82
182 183 5.545063 ATTCATGGGTATATGACGACACA 57.455 39.130 0.00 0.00 36.84 3.72
183 184 5.989168 TGAATTCATGGGTATATGACGACAC 59.011 40.000 3.38 0.00 36.84 3.67
184 185 5.989168 GTGAATTCATGGGTATATGACGACA 59.011 40.000 12.12 0.00 36.84 4.35
187 188 6.859420 TTGTGAATTCATGGGTATATGACG 57.141 37.500 12.12 0.00 36.84 4.35
188 189 8.394971 TGATTGTGAATTCATGGGTATATGAC 57.605 34.615 12.12 0.00 36.84 3.06
189 190 8.993404 TTGATTGTGAATTCATGGGTATATGA 57.007 30.769 12.12 0.00 35.38 2.15
197 198 5.521010 CGGGAAATTGATTGTGAATTCATGG 59.479 40.000 12.12 0.00 0.00 3.66
198 199 5.521010 CCGGGAAATTGATTGTGAATTCATG 59.479 40.000 12.12 0.00 0.00 3.07
199 200 5.187576 ACCGGGAAATTGATTGTGAATTCAT 59.812 36.000 12.12 0.00 0.00 2.57
204 205 3.254657 GTGACCGGGAAATTGATTGTGAA 59.745 43.478 6.32 0.00 0.00 3.18
208 209 2.819608 AGTGTGACCGGGAAATTGATTG 59.180 45.455 6.32 0.00 0.00 2.67
216 217 4.019141 ACCAATTAATAGTGTGACCGGGAA 60.019 41.667 6.32 0.00 0.00 3.97
241 242 8.885693 ACTAGTTGATCATATCCAGCTGTATA 57.114 34.615 13.81 7.28 0.00 1.47
268 269 1.895707 CAGGCAAGGGATCGGCATC 60.896 63.158 0.00 0.00 0.00 3.91
272 273 1.983119 TAAGGCAGGCAAGGGATCGG 61.983 60.000 0.00 0.00 0.00 4.18
277 278 0.912486 AGTACTAAGGCAGGCAAGGG 59.088 55.000 0.00 0.00 0.00 3.95
283 284 5.916661 TCTGTTAAGAGTACTAAGGCAGG 57.083 43.478 0.00 0.00 0.00 4.85
285 286 6.041182 TGTGTTCTGTTAAGAGTACTAAGGCA 59.959 38.462 10.12 0.00 32.79 4.75
286 287 6.365518 GTGTGTTCTGTTAAGAGTACTAAGGC 59.634 42.308 10.12 0.00 32.79 4.35
291 292 7.002879 TCCTAGTGTGTTCTGTTAAGAGTACT 58.997 38.462 10.12 0.00 32.79 2.73
342 343 2.035961 GGAGTTCCCCACAAAAGCTTTC 59.964 50.000 13.10 0.00 0.00 2.62
343 344 2.039418 GGAGTTCCCCACAAAAGCTTT 58.961 47.619 5.69 5.69 0.00 3.51
344 345 1.704641 GGAGTTCCCCACAAAAGCTT 58.295 50.000 0.00 0.00 0.00 3.74
351 352 3.948719 GCACCGGAGTTCCCCACA 61.949 66.667 9.46 0.00 0.00 4.17
352 353 2.764637 AATGCACCGGAGTTCCCCAC 62.765 60.000 9.46 0.00 0.00 4.61
361 362 2.980568 AGAACGATAAAATGCACCGGA 58.019 42.857 9.46 0.00 0.00 5.14
363 364 6.360329 GGTAATAGAACGATAAAATGCACCG 58.640 40.000 0.00 0.00 0.00 4.94
373 374 8.890410 AAGGCTTATAGGGTAATAGAACGATA 57.110 34.615 0.00 0.00 0.00 2.92
386 387 4.407296 AGAAGACAGTGAAGGCTTATAGGG 59.593 45.833 0.00 0.00 0.00 3.53
388 389 5.362430 AGGAGAAGACAGTGAAGGCTTATAG 59.638 44.000 0.00 0.00 0.00 1.31
391 392 3.511477 AGGAGAAGACAGTGAAGGCTTA 58.489 45.455 0.00 0.00 0.00 3.09
394 395 2.810852 CAAAGGAGAAGACAGTGAAGGC 59.189 50.000 0.00 0.00 0.00 4.35
399 400 5.360591 ACTACAACAAAGGAGAAGACAGTG 58.639 41.667 0.00 0.00 0.00 3.66
412 413 5.065704 TCTGCTGCAAAAACTACAACAAA 57.934 34.783 3.02 0.00 0.00 2.83
414 415 4.337836 TGATCTGCTGCAAAAACTACAACA 59.662 37.500 3.02 0.00 0.00 3.33
419 420 4.156556 GGACATGATCTGCTGCAAAAACTA 59.843 41.667 3.02 0.00 0.00 2.24
424 425 2.089201 CTGGACATGATCTGCTGCAAA 58.911 47.619 3.02 0.00 0.00 3.68
480 481 6.541641 GGAAAGGATATGATATGTCCAGATGC 59.458 42.308 7.24 0.00 42.45 3.91
486 487 5.103000 CGACGGAAAGGATATGATATGTCC 58.897 45.833 0.00 0.00 40.52 4.02
531 535 2.025969 CTCATATGCTCCAGCGCCG 61.026 63.158 2.29 0.00 45.83 6.46
534 538 0.949588 CCAGCTCATATGCTCCAGCG 60.950 60.000 8.11 4.54 45.83 5.18
536 540 0.397187 AGCCAGCTCATATGCTCCAG 59.603 55.000 0.00 0.00 41.98 3.86
539 543 1.964552 ACAAGCCAGCTCATATGCTC 58.035 50.000 0.00 0.00 41.98 4.26
545 549 3.558674 GTGGTACAAGCCAGCTCAT 57.441 52.632 0.00 0.00 44.16 2.90
554 558 2.699954 CCTTGCTACTGGTGGTACAAG 58.300 52.381 0.00 0.00 44.16 3.16
558 562 2.241281 TAGCCTTGCTACTGGTGGTA 57.759 50.000 0.00 0.00 40.44 3.25
559 563 3.082619 TAGCCTTGCTACTGGTGGT 57.917 52.632 0.00 0.00 40.44 4.16
579 583 5.633830 ATGTTCCTGTGTTGATGTGAATC 57.366 39.130 0.00 0.00 0.00 2.52
585 589 6.818142 TCACATAGTATGTTCCTGTGTTGATG 59.182 38.462 13.25 0.00 42.70 3.07
586 590 6.818644 GTCACATAGTATGTTCCTGTGTTGAT 59.181 38.462 13.25 0.00 42.70 2.57
587 591 6.014584 AGTCACATAGTATGTTCCTGTGTTGA 60.015 38.462 13.25 2.05 42.70 3.18
588 592 6.091305 CAGTCACATAGTATGTTCCTGTGTTG 59.909 42.308 20.90 7.60 42.70 3.33
589 593 6.166279 CAGTCACATAGTATGTTCCTGTGTT 58.834 40.000 20.90 3.57 42.70 3.32
590 594 5.724328 CAGTCACATAGTATGTTCCTGTGT 58.276 41.667 20.90 0.00 42.70 3.72
591 595 4.568359 GCAGTCACATAGTATGTTCCTGTG 59.432 45.833 25.51 15.96 42.70 3.66
592 596 4.383118 GGCAGTCACATAGTATGTTCCTGT 60.383 45.833 25.51 4.13 42.70 4.00
593 597 4.122776 GGCAGTCACATAGTATGTTCCTG 58.877 47.826 23.07 23.07 42.70 3.86
594 598 3.774766 TGGCAGTCACATAGTATGTTCCT 59.225 43.478 13.25 8.99 42.70 3.36
595 599 4.137116 TGGCAGTCACATAGTATGTTCC 57.863 45.455 13.25 6.91 42.70 3.62
596 600 5.359756 TGATGGCAGTCACATAGTATGTTC 58.640 41.667 13.25 9.55 42.70 3.18
597 601 5.357742 TGATGGCAGTCACATAGTATGTT 57.642 39.130 13.25 0.00 42.70 2.71
607 611 2.766313 TGTGTAGTTGATGGCAGTCAC 58.234 47.619 0.00 0.00 0.00 3.67
641 645 3.253677 CCACACAATGCAAAATGCCAATT 59.746 39.130 0.00 0.00 44.23 2.32
657 661 5.129634 ACAACATACATGAACTTCCACACA 58.870 37.500 0.00 0.00 0.00 3.72
670 674 6.094464 CCACAGATGACAATGACAACATACAT 59.906 38.462 0.00 0.00 35.50 2.29
692 696 8.080417 CCATGACATGATAATCATTTTCTCCAC 58.920 37.037 17.24 0.00 34.28 4.02
721 727 4.220821 ACGATTCAAGCTTGGAGTCTTCTA 59.779 41.667 25.73 0.31 0.00 2.10
736 750 4.220821 AGCTAGGAACAGAAGACGATTCAA 59.779 41.667 7.65 0.00 0.00 2.69
747 761 3.197766 CCCATTGTGTAGCTAGGAACAGA 59.802 47.826 0.00 0.00 0.00 3.41
755 769 2.561209 TCCCTCCCATTGTGTAGCTA 57.439 50.000 0.00 0.00 0.00 3.32
772 786 6.239148 GGGCAAAAGAAGATGAGGATATTTCC 60.239 42.308 0.00 0.00 42.96 3.13
784 798 1.156736 CACGACGGGCAAAAGAAGAT 58.843 50.000 0.00 0.00 0.00 2.40
801 815 9.547753 AGATTATGACTTCATTGGTACATACAC 57.452 33.333 0.00 0.00 39.30 2.90
872 888 1.191489 TCTTCTGGCCCGTCACATGA 61.191 55.000 0.00 0.00 0.00 3.07
922 1252 7.572108 AGAGGAAGATATTTCTCTCCCATTCTT 59.428 37.037 4.98 0.00 33.29 2.52
924 1254 7.315066 AGAGGAAGATATTTCTCTCCCATTC 57.685 40.000 4.98 4.06 33.29 2.67
987 1317 3.926058 AATAGTGCGGTTGGGATACTT 57.074 42.857 0.00 0.00 0.00 2.24
1000 1338 8.076178 CCAGCTGTAAATACCAATTAATAGTGC 58.924 37.037 13.81 0.00 0.00 4.40
1432 1770 2.574450 TGAAAGCTTCACAGATGCACA 58.426 42.857 0.00 2.83 35.57 4.57
1470 1808 8.979574 GGATTGTAAGGTAATAGAACGATGAAG 58.020 37.037 0.00 0.00 0.00 3.02
1488 1826 6.500751 AGGGAGAAGACAGTTAAGGATTGTAA 59.499 38.462 0.00 0.00 0.00 2.41
1574 1915 0.888619 TGTCTCGGAGATGTCCACAC 59.111 55.000 11.46 2.55 44.18 3.82
1638 1979 3.589951 ACCCAGCTCATATGCTTCAAT 57.410 42.857 0.00 0.00 41.98 2.57
1690 2031 4.568359 CAGTCACATAGTATGTTCCTGTGC 59.432 45.833 20.90 7.64 42.70 4.57
1820 2182 1.577328 AAACTGAATCAGTGCCGCCG 61.577 55.000 17.46 0.00 44.62 6.46
1863 2258 4.464244 TGCTCTGTAGTAGCTTTGAGTGAT 59.536 41.667 0.00 0.00 40.73 3.06
1908 2303 6.500910 TGTACGCACTATTATCTGTTACTGG 58.499 40.000 0.00 0.00 0.00 4.00
1983 2378 4.945246 ACCGCACAATTATCTGTAGTAGG 58.055 43.478 0.00 0.00 0.00 3.18
1989 2384 2.747446 GGTCAACCGCACAATTATCTGT 59.253 45.455 0.00 0.00 0.00 3.41
1991 2386 3.350219 AGGTCAACCGCACAATTATCT 57.650 42.857 0.00 0.00 42.08 1.98
1993 2388 3.686016 AGAAGGTCAACCGCACAATTAT 58.314 40.909 0.00 0.00 42.08 1.28
1994 2389 3.134574 AGAAGGTCAACCGCACAATTA 57.865 42.857 0.00 0.00 42.08 1.40
1995 2390 1.981256 AGAAGGTCAACCGCACAATT 58.019 45.000 0.00 0.00 42.08 2.32
2009 2404 6.318900 GGTATCCACAATAAGGTTCAAGAAGG 59.681 42.308 0.00 0.00 0.00 3.46
2010 2405 7.066284 CAGGTATCCACAATAAGGTTCAAGAAG 59.934 40.741 0.00 0.00 0.00 2.85
2011 2406 6.884295 CAGGTATCCACAATAAGGTTCAAGAA 59.116 38.462 0.00 0.00 0.00 2.52
2042 2437 7.308710 GGAACAAACTCGTTACCAAATGGAATA 60.309 37.037 6.42 0.00 38.94 1.75
2062 2466 1.742831 GTATGCGCCAATCAGGAACAA 59.257 47.619 4.18 0.00 41.22 2.83
2064 2468 1.064060 GTGTATGCGCCAATCAGGAAC 59.936 52.381 4.18 0.00 41.22 3.62
2065 2469 1.339535 TGTGTATGCGCCAATCAGGAA 60.340 47.619 4.18 0.00 41.22 3.36
2112 2519 5.139435 ACAGTAAACCCCTTACTTACGAC 57.861 43.478 0.00 0.00 46.75 4.34
2115 2522 5.488262 TGGACAGTAAACCCCTTACTTAC 57.512 43.478 0.00 0.00 46.75 2.34
2224 2640 1.821088 AGGAAACTGAACCAGAGGGT 58.179 50.000 0.45 0.00 46.49 4.34
2225 2641 1.003696 GGAGGAAACTGAACCAGAGGG 59.996 57.143 0.45 0.00 44.43 4.30
2230 2646 5.333566 AAATTAGGGAGGAAACTGAACCA 57.666 39.130 0.00 0.00 44.43 3.67
2231 2647 6.482524 ACTAAATTAGGGAGGAAACTGAACC 58.517 40.000 4.92 0.00 44.43 3.62
2237 2653 7.883833 ACAGAGAAACTAAATTAGGGAGGAAAC 59.116 37.037 4.92 0.00 0.00 2.78
2293 2726 7.290248 TGCTCTACTAAAGATGGGCTTAATAGT 59.710 37.037 0.00 0.00 35.43 2.12
2296 2729 6.126768 TGTGCTCTACTAAAGATGGGCTTAAT 60.127 38.462 0.00 0.00 35.24 1.40
2369 2891 5.016051 TGATTAACAAACCTTTGCTGCAA 57.984 34.783 11.69 11.69 41.79 4.08
2371 2893 6.365050 CAATTGATTAACAAACCTTTGCTGC 58.635 36.000 0.00 0.00 42.03 5.25
2372 2894 6.018098 TGCAATTGATTAACAAACCTTTGCTG 60.018 34.615 10.34 0.00 44.31 4.41
2390 2921 3.949754 ACATGGATGGAGTAGTGCAATTG 59.050 43.478 0.00 0.00 0.00 2.32
2394 2925 2.356022 CCAACATGGATGGAGTAGTGCA 60.356 50.000 13.09 0.00 40.96 4.57
2395 2926 2.292267 CCAACATGGATGGAGTAGTGC 58.708 52.381 13.09 0.00 40.96 4.40
2396 2927 2.923121 CCCAACATGGATGGAGTAGTG 58.077 52.381 18.51 0.57 40.96 2.74
2397 2928 1.212935 GCCCAACATGGATGGAGTAGT 59.787 52.381 18.51 0.00 40.96 2.73
2398 2929 1.212688 TGCCCAACATGGATGGAGTAG 59.787 52.381 18.51 5.66 40.96 2.57
2399 2930 1.064758 GTGCCCAACATGGATGGAGTA 60.065 52.381 18.51 7.77 40.96 2.59
2413 2944 1.915489 ACATAATCTGACCTGTGCCCA 59.085 47.619 0.00 0.00 0.00 5.36
2434 2965 8.593492 ATTTTGGACTGCTGTTTCTAAATTTC 57.407 30.769 0.00 0.00 0.00 2.17
2442 2973 4.675114 CGTTGTATTTTGGACTGCTGTTTC 59.325 41.667 0.00 0.00 0.00 2.78
2448 2979 2.697431 TGCGTTGTATTTTGGACTGC 57.303 45.000 0.00 0.00 0.00 4.40
2479 3029 2.147958 GTGTTTGACTTCGCCACCATA 58.852 47.619 0.00 0.00 0.00 2.74
2486 3036 2.825086 ACAACAGTGTTTGACTTCGC 57.175 45.000 5.57 0.00 32.58 4.70
2510 3071 9.194972 TGTATTACTAATTCAATCCCATTTGCA 57.805 29.630 0.00 0.00 0.00 4.08
2658 3220 3.627577 GTGCACTTCACTCCAGAAGAAAA 59.372 43.478 10.32 0.00 46.18 2.29
2696 3258 2.164624 AGTGATCGTTGGAGTACTGAGC 59.835 50.000 0.00 0.00 0.00 4.26
2763 3397 6.916360 AAAAGAACTTGGGAATAGCAATCA 57.084 33.333 0.00 0.00 0.00 2.57
2773 3407 3.132925 CGTACCGAAAAAGAACTTGGGA 58.867 45.455 0.00 0.00 0.00 4.37
2797 3431 7.817418 TTGGAAGTACAAGGCATATAATTCC 57.183 36.000 12.39 12.39 41.34 3.01
2812 3448 8.992073 AGCATGAAAATTCAATTTTGGAAGTAC 58.008 29.630 12.95 0.00 42.15 2.73
2832 3468 6.377712 TGTGTCCATGATGATTAAAAGCATGA 59.622 34.615 16.91 0.00 38.82 3.07
2853 3489 6.183360 GCATAAGCTTATGTCCAAGATTGTGT 60.183 38.462 35.32 4.12 41.93 3.72
2871 3507 3.458189 AGATGAACGTGTAGGCATAAGC 58.542 45.455 0.00 0.00 41.10 3.09
2873 3509 4.341235 AGCTAGATGAACGTGTAGGCATAA 59.659 41.667 0.00 0.00 0.00 1.90
2902 3538 4.824537 TGCACAACAAGGTAACACATACAT 59.175 37.500 0.00 0.00 36.14 2.29
2903 3539 4.200092 TGCACAACAAGGTAACACATACA 58.800 39.130 0.00 0.00 36.14 2.29
2908 3544 3.875134 AGTACTGCACAACAAGGTAACAC 59.125 43.478 0.00 0.00 41.41 3.32
2912 3548 3.462982 CACAGTACTGCACAACAAGGTA 58.537 45.455 22.90 0.00 0.00 3.08
2914 3550 1.002468 GCACAGTACTGCACAACAAGG 60.002 52.381 22.90 2.84 37.11 3.61
3040 3676 1.117150 TACCTCGTAGGGCCAATCAC 58.883 55.000 6.18 0.00 40.58 3.06
3051 3687 3.510753 TGTTTGTGTAGGCATACCTCGTA 59.489 43.478 6.00 0.00 46.34 3.43
3070 3706 1.002468 GCTTGTGACTGCAACGATGTT 60.002 47.619 0.00 0.00 0.00 2.71
3156 3792 2.148916 TGACGGCGACATGAATATCC 57.851 50.000 16.62 0.00 0.00 2.59
3160 3796 1.935873 CATCTTGACGGCGACATGAAT 59.064 47.619 25.31 14.51 0.00 2.57
3489 4125 3.078837 GACCTTTGGGACGAAATTGCTA 58.921 45.455 0.00 0.00 36.25 3.49
3600 4236 1.859302 AGCTCCGGGATATCATCTCC 58.141 55.000 0.00 0.00 0.00 3.71
3670 4306 4.113815 CCCGCCAGCCATCTCCAA 62.114 66.667 0.00 0.00 0.00 3.53
3752 4388 2.045926 CTTCCCGGGTCAGCTTGG 60.046 66.667 22.86 0.00 0.00 3.61
3754 4390 1.679898 CTTCTTCCCGGGTCAGCTT 59.320 57.895 22.86 0.00 0.00 3.74
3779 4415 2.158842 GCAGCAACAGGTGATATCTCCT 60.159 50.000 18.67 18.67 40.20 3.69
3780 4416 2.216898 GCAGCAACAGGTGATATCTCC 58.783 52.381 14.79 14.79 32.66 3.71
3781 4417 2.216898 GGCAGCAACAGGTGATATCTC 58.783 52.381 3.98 0.00 32.66 2.75
3813 4452 1.765314 ACACACAGCTTCTTCTCCAGT 59.235 47.619 0.00 0.00 0.00 4.00
4122 4770 8.043710 ACTTTTATTAGCTAAGTGCATCACTCT 58.956 33.333 12.54 0.00 44.62 3.24
4201 4849 5.295431 TGTTTCTCCAATAATGAAGTGCG 57.705 39.130 0.00 0.00 0.00 5.34
4250 4898 5.869649 AAACTAATTTGAAGTTGCCCTGT 57.130 34.783 0.00 0.00 37.26 4.00
4292 4940 7.120579 TCAACAGTACTGAACAGACAAACAAAT 59.879 33.333 29.30 0.00 0.00 2.32
4294 4942 5.935206 TCAACAGTACTGAACAGACAAACAA 59.065 36.000 29.30 0.00 0.00 2.83
4295 4943 5.483811 TCAACAGTACTGAACAGACAAACA 58.516 37.500 29.30 0.00 0.00 2.83
4296 4944 6.604735 ATCAACAGTACTGAACAGACAAAC 57.395 37.500 29.30 2.05 0.00 2.93
4304 4952 8.988934 TCAGAATTTGTATCAACAGTACTGAAC 58.011 33.333 29.30 16.96 36.83 3.18
4331 4979 9.258826 CACAGATGGTTCAAACAATATTTTCAA 57.741 29.630 0.00 0.00 0.00 2.69
4332 4980 8.637099 TCACAGATGGTTCAAACAATATTTTCA 58.363 29.630 0.00 0.00 0.00 2.69
4386 5036 5.841957 ATTTCTCTCAAAAATGATCCCCG 57.158 39.130 0.00 0.00 0.00 5.73
4390 5040 8.530269 AGCACAAATTTCTCTCAAAAATGATC 57.470 30.769 0.00 0.00 0.00 2.92
4441 5092 6.849085 TTGTTACTGCCACCATGATAAAAT 57.151 33.333 0.00 0.00 0.00 1.82
4449 5100 3.495331 TCATGTTTGTTACTGCCACCAT 58.505 40.909 0.00 0.00 0.00 3.55
4524 5175 5.643379 TGCTGTCAACCAAATCTTTATCC 57.357 39.130 0.00 0.00 0.00 2.59
4540 5192 1.133790 GCCTGGAATGATGTTGCTGTC 59.866 52.381 0.00 0.00 0.00 3.51
4541 5193 1.180029 GCCTGGAATGATGTTGCTGT 58.820 50.000 0.00 0.00 0.00 4.40
4571 5223 5.010415 GCTGCCTATCTAATTTCTTTGGCAT 59.990 40.000 12.34 0.00 46.30 4.40
4597 5249 1.865788 ATGCCGATGCGTGCAGTTTT 61.866 50.000 0.00 0.00 41.78 2.43
4611 5263 3.365969 GGTTCTTGAAGGTAACAATGCCG 60.366 47.826 0.00 0.00 36.26 5.69
4613 5265 4.518970 TCTGGTTCTTGAAGGTAACAATGC 59.481 41.667 0.00 0.00 41.41 3.56
4621 5333 2.038295 CTCTGCTCTGGTTCTTGAAGGT 59.962 50.000 0.00 0.00 0.00 3.50
4633 5345 6.310956 CACTAAGAAAATCAGACTCTGCTCTG 59.689 42.308 0.62 0.00 39.35 3.35
4634 5346 6.014669 ACACTAAGAAAATCAGACTCTGCTCT 60.015 38.462 0.62 0.00 0.00 4.09
4658 5370 3.825328 AGGATGGAAGATGGCATGTAAC 58.175 45.455 3.81 0.00 0.00 2.50
4666 5378 1.270518 CGTGCCTAGGATGGAAGATGG 60.271 57.143 14.75 0.00 0.00 3.51
4685 5397 8.129211 ACCACTAGAACAAGAAAAAGAATTTCG 58.871 33.333 0.00 0.00 37.28 3.46
4699 5411 5.865085 ACTAGATTGCAACCACTAGAACAA 58.135 37.500 28.07 6.20 36.72 2.83
4701 5413 6.091441 CAGAACTAGATTGCAACCACTAGAAC 59.909 42.308 28.07 22.33 36.72 3.01
4702 5414 6.166279 CAGAACTAGATTGCAACCACTAGAA 58.834 40.000 28.07 7.23 36.72 2.10
4703 5415 5.246203 ACAGAACTAGATTGCAACCACTAGA 59.754 40.000 28.07 7.74 36.72 2.43
4704 5416 5.482908 ACAGAACTAGATTGCAACCACTAG 58.517 41.667 23.50 23.50 38.45 2.57
4705 5417 5.011635 TGACAGAACTAGATTGCAACCACTA 59.988 40.000 0.00 5.53 0.00 2.74
4706 5418 4.202357 TGACAGAACTAGATTGCAACCACT 60.202 41.667 0.00 4.54 0.00 4.00
4707 5419 4.065088 TGACAGAACTAGATTGCAACCAC 58.935 43.478 0.00 0.00 0.00 4.16
4708 5420 4.350368 TGACAGAACTAGATTGCAACCA 57.650 40.909 0.00 0.00 0.00 3.67
4709 5421 5.689383 TTTGACAGAACTAGATTGCAACC 57.311 39.130 0.00 0.00 0.00 3.77
4710 5422 5.570589 GCATTTGACAGAACTAGATTGCAAC 59.429 40.000 0.00 0.00 0.00 4.17
4711 5423 5.335897 GGCATTTGACAGAACTAGATTGCAA 60.336 40.000 0.00 0.00 0.00 4.08
4712 5424 4.156556 GGCATTTGACAGAACTAGATTGCA 59.843 41.667 0.00 0.00 0.00 4.08
4713 5425 4.156556 TGGCATTTGACAGAACTAGATTGC 59.843 41.667 0.00 0.00 0.00 3.56
4714 5426 5.413833 AGTGGCATTTGACAGAACTAGATTG 59.586 40.000 0.00 0.00 30.83 2.67
4715 5427 5.564550 AGTGGCATTTGACAGAACTAGATT 58.435 37.500 0.00 0.00 30.83 2.40
4716 5428 5.171339 AGTGGCATTTGACAGAACTAGAT 57.829 39.130 0.00 0.00 30.83 1.98
4717 5429 4.623932 AGTGGCATTTGACAGAACTAGA 57.376 40.909 0.00 0.00 30.83 2.43
4718 5430 4.516698 ACAAGTGGCATTTGACAGAACTAG 59.483 41.667 26.72 0.00 30.83 2.57
4719 5431 4.275689 CACAAGTGGCATTTGACAGAACTA 59.724 41.667 26.72 0.00 30.83 2.24
4720 5432 3.067180 CACAAGTGGCATTTGACAGAACT 59.933 43.478 26.72 2.09 30.83 3.01
4767 5479 1.675641 GGAGGGCAATGTCAGCGTT 60.676 57.895 0.00 0.00 0.00 4.84
4770 5482 2.440980 GGGGAGGGCAATGTCAGC 60.441 66.667 0.00 0.00 0.00 4.26
4800 5512 2.301583 GGAGTTGGAGCAGAAGAAGACT 59.698 50.000 0.00 0.00 0.00 3.24
4824 5536 3.252701 GCTTCAGGACCATATCAGCATTG 59.747 47.826 0.00 0.00 0.00 2.82
4825 5537 3.137913 AGCTTCAGGACCATATCAGCATT 59.862 43.478 0.00 0.00 0.00 3.56
4838 5550 3.769739 TCAAAAGTAGCAGCTTCAGGA 57.230 42.857 0.00 0.00 0.00 3.86
4906 5618 4.432741 GGACTGGGGCAGGAAGGC 62.433 72.222 0.00 0.00 43.27 4.35
4919 5631 6.859112 TCTAATAACAGAAAGCAGAGGACT 57.141 37.500 0.00 0.00 0.00 3.85
4986 5730 2.669113 CGAACATGTACTTCGACCGGAA 60.669 50.000 9.46 0.00 42.57 4.30
4990 5734 2.665052 GGTTCGAACATGTACTTCGACC 59.335 50.000 28.24 17.35 46.88 4.79
5000 5744 1.350193 CGAGGACTGGTTCGAACATG 58.650 55.000 28.24 21.08 39.06 3.21
5102 5847 2.733956 TGCAAGGTTCCTGTTTTGTCT 58.266 42.857 0.00 0.00 0.00 3.41
5114 5859 5.539955 AGTGTTCTTCCAATAATGCAAGGTT 59.460 36.000 0.00 0.00 0.00 3.50
5117 5862 6.258230 TGAGTGTTCTTCCAATAATGCAAG 57.742 37.500 0.00 0.00 0.00 4.01
5155 5900 8.514594 TCTCATTTGTCTATGAATGTTGGTTTC 58.485 33.333 0.00 0.00 34.32 2.78
5166 5911 3.179443 GGCGGTCTCATTTGTCTATGA 57.821 47.619 0.00 0.00 33.66 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.