Multiple sequence alignment - TraesCS1D01G014300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G014300 chr1D 100.000 3989 0 0 1 3989 7026754 7030742 0.000000e+00 7367.0
1 TraesCS1D01G014300 chr1D 90.393 1884 156 14 1380 3255 7082000 7083866 0.000000e+00 2453.0
2 TraesCS1D01G014300 chr1D 86.611 1688 193 16 1543 3215 7050387 7052056 0.000000e+00 1834.0
3 TraesCS1D01G014300 chr1D 85.276 815 108 9 1399 2212 7333609 7334412 0.000000e+00 830.0
4 TraesCS1D01G014300 chr1D 83.333 864 117 17 2253 3109 7685784 7684941 0.000000e+00 773.0
5 TraesCS1D01G014300 chr1D 83.102 864 120 16 2253 3109 7691740 7690896 0.000000e+00 763.0
6 TraesCS1D01G014300 chr1D 85.655 481 54 4 557 1034 7049501 7049969 3.580000e-135 492.0
7 TraesCS1D01G014300 chr1D 94.118 68 4 0 110 177 7043619 7043686 1.960000e-18 104.0
8 TraesCS1D01G014300 chr1D 97.826 46 1 0 3930 3975 7459793 7459838 3.300000e-11 80.5
9 TraesCS1D01G014300 chr1D 97.826 46 1 0 3930 3975 7516218 7516173 3.300000e-11 80.5
10 TraesCS1D01G014300 chr1A 84.117 1681 194 21 662 2299 9149664 9148014 0.000000e+00 1557.0
11 TraesCS1D01G014300 chr1A 84.371 1414 194 21 1925 3321 9128060 9126657 0.000000e+00 1362.0
12 TraesCS1D01G014300 chr1A 85.219 548 47 22 3144 3668 8628009 8628545 2.110000e-147 532.0
13 TraesCS1D01G014300 chr1A 78.205 546 75 17 110 636 9153424 9152904 3.870000e-80 309.0
14 TraesCS1D01G014300 chr1A 91.608 143 12 0 3833 3975 8628720 8628862 8.740000e-47 198.0
15 TraesCS1D01G014300 chr1A 88.095 126 15 0 3720 3845 8628559 8628684 2.480000e-32 150.0
16 TraesCS1D01G014300 chr2B 77.429 1976 391 41 1043 2998 402557755 402555815 0.000000e+00 1127.0
17 TraesCS1D01G014300 chr2D 77.275 1989 386 50 1034 2998 334265777 334263831 0.000000e+00 1109.0
18 TraesCS1D01G014300 chr5D 78.704 1620 291 37 1393 2991 510656963 510658549 0.000000e+00 1031.0
19 TraesCS1D01G014300 chr5B 78.615 1632 289 39 1396 2991 641714569 641716176 0.000000e+00 1026.0
20 TraesCS1D01G014300 chr6A 77.196 1605 292 46 1403 2991 610269121 610270667 0.000000e+00 869.0
21 TraesCS1D01G014300 chr6A 81.930 1057 163 12 1937 2991 610275381 610276411 0.000000e+00 869.0
22 TraesCS1D01G014300 chrUn 79.835 1091 188 23 1911 2995 253312527 253313591 0.000000e+00 767.0
23 TraesCS1D01G014300 chr1B 93.617 47 2 1 3929 3975 9582417 9582462 7.150000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G014300 chr1D 7026754 7030742 3988 False 7367.000000 7367 100.000000 1 3989 1 chr1D.!!$F1 3988
1 TraesCS1D01G014300 chr1D 7082000 7083866 1866 False 2453.000000 2453 90.393000 1380 3255 1 chr1D.!!$F3 1875
2 TraesCS1D01G014300 chr1D 7049501 7052056 2555 False 1163.000000 1834 86.133000 557 3215 2 chr1D.!!$F6 2658
3 TraesCS1D01G014300 chr1D 7333609 7334412 803 False 830.000000 830 85.276000 1399 2212 1 chr1D.!!$F4 813
4 TraesCS1D01G014300 chr1D 7684941 7685784 843 True 773.000000 773 83.333000 2253 3109 1 chr1D.!!$R2 856
5 TraesCS1D01G014300 chr1D 7690896 7691740 844 True 763.000000 763 83.102000 2253 3109 1 chr1D.!!$R3 856
6 TraesCS1D01G014300 chr1A 9126657 9128060 1403 True 1362.000000 1362 84.371000 1925 3321 1 chr1A.!!$R1 1396
7 TraesCS1D01G014300 chr1A 9148014 9153424 5410 True 933.000000 1557 81.161000 110 2299 2 chr1A.!!$R2 2189
8 TraesCS1D01G014300 chr1A 8628009 8628862 853 False 293.333333 532 88.307333 3144 3975 3 chr1A.!!$F1 831
9 TraesCS1D01G014300 chr2B 402555815 402557755 1940 True 1127.000000 1127 77.429000 1043 2998 1 chr2B.!!$R1 1955
10 TraesCS1D01G014300 chr2D 334263831 334265777 1946 True 1109.000000 1109 77.275000 1034 2998 1 chr2D.!!$R1 1964
11 TraesCS1D01G014300 chr5D 510656963 510658549 1586 False 1031.000000 1031 78.704000 1393 2991 1 chr5D.!!$F1 1598
12 TraesCS1D01G014300 chr5B 641714569 641716176 1607 False 1026.000000 1026 78.615000 1396 2991 1 chr5B.!!$F1 1595
13 TraesCS1D01G014300 chr6A 610269121 610270667 1546 False 869.000000 869 77.196000 1403 2991 1 chr6A.!!$F1 1588
14 TraesCS1D01G014300 chr6A 610275381 610276411 1030 False 869.000000 869 81.930000 1937 2991 1 chr6A.!!$F2 1054
15 TraesCS1D01G014300 chrUn 253312527 253313591 1064 False 767.000000 767 79.835000 1911 2995 1 chrUn.!!$F1 1084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 3905 0.170339 GTTTAGTTGTGCGCCCCATC 59.830 55.0 4.18 0.68 0.00 3.51 F
1701 4979 0.534203 GGGCCGTCAACTTCAGACAA 60.534 55.0 0.00 0.00 35.77 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2335 5653 0.249489 ATGATTCTAGACCGCGTGCC 60.249 55.0 4.92 0.0 0.00 5.01 R
3695 7078 0.113972 TCATTGACATGGGGGCAACA 59.886 50.0 0.00 0.0 39.74 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.771590 TGAAAAGACAATGCTGGATGAC 57.228 40.909 0.00 0.00 0.00 3.06
23 24 4.143543 TGAAAAGACAATGCTGGATGACA 58.856 39.130 0.00 0.00 0.00 3.58
24 25 4.583907 TGAAAAGACAATGCTGGATGACAA 59.416 37.500 0.00 0.00 0.00 3.18
25 26 4.510038 AAAGACAATGCTGGATGACAAC 57.490 40.909 0.00 0.00 0.00 3.32
26 27 3.430042 AGACAATGCTGGATGACAACT 57.570 42.857 0.00 0.00 0.00 3.16
27 28 4.558226 AGACAATGCTGGATGACAACTA 57.442 40.909 0.00 0.00 0.00 2.24
28 29 5.108187 AGACAATGCTGGATGACAACTAT 57.892 39.130 0.00 0.00 0.00 2.12
29 30 6.239217 AGACAATGCTGGATGACAACTATA 57.761 37.500 0.00 0.00 0.00 1.31
30 31 6.835174 AGACAATGCTGGATGACAACTATAT 58.165 36.000 0.00 0.00 0.00 0.86
31 32 7.966812 AGACAATGCTGGATGACAACTATATA 58.033 34.615 0.00 0.00 0.00 0.86
32 33 8.600668 AGACAATGCTGGATGACAACTATATAT 58.399 33.333 0.00 0.00 0.00 0.86
33 34 8.557592 ACAATGCTGGATGACAACTATATATG 57.442 34.615 0.00 0.00 0.00 1.78
34 35 8.377799 ACAATGCTGGATGACAACTATATATGA 58.622 33.333 0.00 0.00 0.00 2.15
35 36 8.663025 CAATGCTGGATGACAACTATATATGAC 58.337 37.037 0.00 0.00 0.00 3.06
36 37 7.544804 TGCTGGATGACAACTATATATGACT 57.455 36.000 0.00 0.00 0.00 3.41
37 38 7.966812 TGCTGGATGACAACTATATATGACTT 58.033 34.615 0.00 0.00 0.00 3.01
38 39 7.874528 TGCTGGATGACAACTATATATGACTTG 59.125 37.037 0.00 0.00 0.00 3.16
39 40 8.090831 GCTGGATGACAACTATATATGACTTGA 58.909 37.037 0.00 0.00 0.00 3.02
57 58 2.483583 GATCTGAAGATCGTCGTGCT 57.516 50.000 4.61 0.00 41.15 4.40
58 59 2.803451 GATCTGAAGATCGTCGTGCTT 58.197 47.619 4.61 0.00 41.15 3.91
59 60 1.982612 TCTGAAGATCGTCGTGCTTG 58.017 50.000 4.15 0.00 0.00 4.01
60 61 0.368227 CTGAAGATCGTCGTGCTTGC 59.632 55.000 4.15 0.00 0.00 4.01
61 62 1.014044 TGAAGATCGTCGTGCTTGCC 61.014 55.000 4.15 0.00 0.00 4.52
62 63 1.005037 AAGATCGTCGTGCTTGCCA 60.005 52.632 0.00 0.00 0.00 4.92
63 64 0.391661 AAGATCGTCGTGCTTGCCAT 60.392 50.000 0.00 0.00 0.00 4.40
64 65 0.391661 AGATCGTCGTGCTTGCCATT 60.392 50.000 0.00 0.00 0.00 3.16
65 66 0.447801 GATCGTCGTGCTTGCCATTT 59.552 50.000 0.00 0.00 0.00 2.32
66 67 0.881118 ATCGTCGTGCTTGCCATTTT 59.119 45.000 0.00 0.00 0.00 1.82
67 68 0.665835 TCGTCGTGCTTGCCATTTTT 59.334 45.000 0.00 0.00 0.00 1.94
87 88 2.561478 TTTAGTGCAAGTCAGGGACC 57.439 50.000 0.00 0.00 32.18 4.46
88 89 1.729586 TTAGTGCAAGTCAGGGACCT 58.270 50.000 0.00 0.00 32.18 3.85
89 90 1.267121 TAGTGCAAGTCAGGGACCTC 58.733 55.000 0.00 0.00 32.18 3.85
90 91 0.472734 AGTGCAAGTCAGGGACCTCT 60.473 55.000 0.00 0.00 32.18 3.69
91 92 0.398318 GTGCAAGTCAGGGACCTCTT 59.602 55.000 0.00 0.00 32.18 2.85
92 93 1.623811 GTGCAAGTCAGGGACCTCTTA 59.376 52.381 0.00 0.00 32.18 2.10
93 94 2.038557 GTGCAAGTCAGGGACCTCTTAA 59.961 50.000 0.00 0.00 32.18 1.85
94 95 2.912956 TGCAAGTCAGGGACCTCTTAAT 59.087 45.455 0.00 0.00 32.18 1.40
95 96 3.330701 TGCAAGTCAGGGACCTCTTAATT 59.669 43.478 0.00 0.00 32.18 1.40
96 97 3.691609 GCAAGTCAGGGACCTCTTAATTG 59.308 47.826 0.00 0.00 32.18 2.32
97 98 4.265073 CAAGTCAGGGACCTCTTAATTGG 58.735 47.826 0.00 0.00 32.18 3.16
98 99 3.532102 AGTCAGGGACCTCTTAATTGGT 58.468 45.455 0.00 0.00 39.60 3.67
99 100 4.695606 AGTCAGGGACCTCTTAATTGGTA 58.304 43.478 0.00 0.00 36.59 3.25
100 101 4.470304 AGTCAGGGACCTCTTAATTGGTAC 59.530 45.833 0.00 1.68 36.59 3.34
101 102 4.470304 GTCAGGGACCTCTTAATTGGTACT 59.530 45.833 8.56 4.44 37.34 2.73
102 103 5.659971 GTCAGGGACCTCTTAATTGGTACTA 59.340 44.000 8.56 0.00 37.34 1.82
103 104 6.326843 GTCAGGGACCTCTTAATTGGTACTAT 59.673 42.308 8.56 0.00 37.34 2.12
104 105 7.508296 GTCAGGGACCTCTTAATTGGTACTATA 59.492 40.741 8.56 0.00 37.34 1.31
105 106 8.239478 TCAGGGACCTCTTAATTGGTACTATAT 58.761 37.037 8.56 0.00 37.34 0.86
106 107 8.314751 CAGGGACCTCTTAATTGGTACTATATG 58.685 40.741 8.56 1.87 37.34 1.78
107 108 8.017251 AGGGACCTCTTAATTGGTACTATATGT 58.983 37.037 8.56 0.00 37.34 2.29
108 109 8.312564 GGGACCTCTTAATTGGTACTATATGTC 58.687 40.741 8.56 0.00 37.34 3.06
109 110 8.867097 GGACCTCTTAATTGGTACTATATGTCA 58.133 37.037 0.00 0.00 36.59 3.58
112 113 9.209175 CCTCTTAATTGGTACTATATGTCAAGC 57.791 37.037 0.00 0.00 0.00 4.01
152 153 8.927675 TTTATGTTAACATCCACACCTAGTTT 57.072 30.769 24.00 0.00 37.76 2.66
160 161 5.654650 ACATCCACACCTAGTTTTGTTTTGA 59.345 36.000 0.00 0.00 0.00 2.69
165 166 8.410141 TCCACACCTAGTTTTGTTTTGAATAAG 58.590 33.333 0.00 0.00 0.00 1.73
177 178 7.435068 TGTTTTGAATAAGGAAGAGTAGTGC 57.565 36.000 0.00 0.00 0.00 4.40
180 181 3.194755 TGAATAAGGAAGAGTAGTGCGCA 59.805 43.478 5.66 5.66 0.00 6.09
181 182 2.941453 TAAGGAAGAGTAGTGCGCAG 57.059 50.000 12.22 0.00 0.00 5.18
183 184 1.835494 AGGAAGAGTAGTGCGCAGTA 58.165 50.000 20.85 20.85 0.00 2.74
184 185 1.746220 AGGAAGAGTAGTGCGCAGTAG 59.254 52.381 24.87 0.00 0.00 2.57
185 186 1.202313 GGAAGAGTAGTGCGCAGTAGG 60.202 57.143 24.87 0.00 0.00 3.18
196 197 2.666989 GCAGTAGGCGAGCAACTAC 58.333 57.895 0.00 0.74 39.81 2.73
198 199 0.530744 CAGTAGGCGAGCAACTACCA 59.469 55.000 7.54 0.00 40.25 3.25
199 200 0.531200 AGTAGGCGAGCAACTACCAC 59.469 55.000 7.54 0.00 40.25 4.16
200 201 0.801067 GTAGGCGAGCAACTACCACG 60.801 60.000 0.00 0.00 34.83 4.94
201 202 0.961857 TAGGCGAGCAACTACCACGA 60.962 55.000 0.00 0.00 0.00 4.35
202 203 1.373748 GGCGAGCAACTACCACGAA 60.374 57.895 0.00 0.00 0.00 3.85
203 204 0.947180 GGCGAGCAACTACCACGAAA 60.947 55.000 0.00 0.00 0.00 3.46
204 205 0.863144 GCGAGCAACTACCACGAAAA 59.137 50.000 0.00 0.00 0.00 2.29
205 206 1.463444 GCGAGCAACTACCACGAAAAT 59.537 47.619 0.00 0.00 0.00 1.82
206 207 2.724839 GCGAGCAACTACCACGAAAATG 60.725 50.000 0.00 0.00 0.00 2.32
207 208 2.734606 CGAGCAACTACCACGAAAATGA 59.265 45.455 0.00 0.00 0.00 2.57
208 209 3.423123 CGAGCAACTACCACGAAAATGAC 60.423 47.826 0.00 0.00 0.00 3.06
209 210 2.812011 AGCAACTACCACGAAAATGACC 59.188 45.455 0.00 0.00 0.00 4.02
210 211 2.812011 GCAACTACCACGAAAATGACCT 59.188 45.455 0.00 0.00 0.00 3.85
211 212 3.364964 GCAACTACCACGAAAATGACCTG 60.365 47.826 0.00 0.00 0.00 4.00
212 213 3.764237 ACTACCACGAAAATGACCTGT 57.236 42.857 0.00 0.00 0.00 4.00
222 223 0.607489 AATGACCTGTGCCAGCAGAC 60.607 55.000 0.00 0.00 38.70 3.51
224 225 3.170672 ACCTGTGCCAGCAGACCA 61.171 61.111 0.00 0.00 38.70 4.02
251 252 4.704965 AGTGACCTTTTGGAACTAGTGAC 58.295 43.478 0.00 0.00 44.07 3.67
252 253 4.409247 AGTGACCTTTTGGAACTAGTGACT 59.591 41.667 0.00 0.00 44.07 3.41
253 254 5.601313 AGTGACCTTTTGGAACTAGTGACTA 59.399 40.000 0.00 0.00 44.07 2.59
254 255 6.270231 AGTGACCTTTTGGAACTAGTGACTAT 59.730 38.462 0.00 0.00 44.07 2.12
255 256 6.935208 GTGACCTTTTGGAACTAGTGACTATT 59.065 38.462 0.00 0.00 44.07 1.73
256 257 6.934645 TGACCTTTTGGAACTAGTGACTATTG 59.065 38.462 0.00 0.00 44.07 1.90
257 258 7.074653 ACCTTTTGGAACTAGTGACTATTGA 57.925 36.000 0.00 0.00 44.07 2.57
258 259 7.162082 ACCTTTTGGAACTAGTGACTATTGAG 58.838 38.462 0.00 0.00 44.07 3.02
260 261 7.332182 CCTTTTGGAACTAGTGACTATTGAGAC 59.668 40.741 0.00 0.00 44.07 3.36
261 262 5.916661 TGGAACTAGTGACTATTGAGACC 57.083 43.478 0.00 0.00 0.00 3.85
264 265 5.163499 GGAACTAGTGACTATTGAGACCTGG 60.163 48.000 0.00 0.00 0.00 4.45
265 266 4.282496 ACTAGTGACTATTGAGACCTGGG 58.718 47.826 0.00 0.00 0.00 4.45
267 268 4.000928 AGTGACTATTGAGACCTGGGAT 57.999 45.455 0.00 0.00 0.00 3.85
268 269 3.708631 AGTGACTATTGAGACCTGGGATG 59.291 47.826 0.00 0.00 0.00 3.51
269 270 3.452627 GTGACTATTGAGACCTGGGATGT 59.547 47.826 0.00 0.00 0.00 3.06
271 272 5.128827 GTGACTATTGAGACCTGGGATGTTA 59.871 44.000 0.00 0.00 0.00 2.41
272 273 5.905331 TGACTATTGAGACCTGGGATGTTAT 59.095 40.000 0.00 0.00 0.00 1.89
273 274 6.042093 TGACTATTGAGACCTGGGATGTTATC 59.958 42.308 0.00 0.00 0.00 1.75
274 275 5.905331 ACTATTGAGACCTGGGATGTTATCA 59.095 40.000 0.00 0.00 0.00 2.15
275 276 5.919348 ATTGAGACCTGGGATGTTATCAT 57.081 39.130 0.00 0.00 36.95 2.45
276 277 4.694760 TGAGACCTGGGATGTTATCATG 57.305 45.455 0.00 0.00 34.06 3.07
277 278 4.297768 TGAGACCTGGGATGTTATCATGA 58.702 43.478 0.00 0.00 34.06 3.07
280 281 6.014242 TGAGACCTGGGATGTTATCATGATAC 60.014 42.308 15.10 10.76 34.06 2.24
317 327 5.194432 GTTAGATACTGTGAGAGGGAGACA 58.806 45.833 0.00 0.00 0.00 3.41
320 330 4.892934 AGATACTGTGAGAGGGAGACAATC 59.107 45.833 0.00 0.00 0.00 2.67
321 331 3.182887 ACTGTGAGAGGGAGACAATCT 57.817 47.619 0.00 0.00 0.00 2.40
323 333 3.906846 ACTGTGAGAGGGAGACAATCTTT 59.093 43.478 0.00 0.00 0.00 2.52
328 338 4.142071 TGAGAGGGAGACAATCTTTGATCG 60.142 45.833 0.00 0.00 0.00 3.69
334 344 4.093556 GGAGACAATCTTTGATCGGTTGAC 59.906 45.833 0.00 0.00 0.00 3.18
339 349 3.040147 TCTTTGATCGGTTGACCACTC 57.960 47.619 0.51 0.00 35.14 3.51
340 350 1.726791 CTTTGATCGGTTGACCACTCG 59.273 52.381 0.51 0.00 35.14 4.18
349 359 1.185618 TTGACCACTCGGGAGTCCAG 61.186 60.000 12.30 7.34 40.20 3.86
351 361 3.775654 CCACTCGGGAGTCCAGGC 61.776 72.222 12.30 0.00 40.20 4.85
371 381 2.184830 CCACCGCGTCTCCGAGATA 61.185 63.158 4.92 0.00 35.78 1.98
372 382 1.721664 CCACCGCGTCTCCGAGATAA 61.722 60.000 4.92 0.00 35.78 1.75
373 383 0.311165 CACCGCGTCTCCGAGATAAT 59.689 55.000 4.92 0.00 35.78 1.28
374 384 0.592148 ACCGCGTCTCCGAGATAATC 59.408 55.000 4.92 0.00 35.78 1.75
375 385 0.875728 CCGCGTCTCCGAGATAATCT 59.124 55.000 4.92 0.00 35.78 2.40
376 386 1.267261 CCGCGTCTCCGAGATAATCTT 59.733 52.381 4.92 0.00 35.78 2.40
377 387 2.287668 CCGCGTCTCCGAGATAATCTTT 60.288 50.000 4.92 0.00 35.78 2.52
378 388 2.974536 CGCGTCTCCGAGATAATCTTTC 59.025 50.000 0.33 0.00 35.78 2.62
379 389 3.310246 GCGTCTCCGAGATAATCTTTCC 58.690 50.000 0.33 0.00 35.63 3.13
380 390 3.243434 GCGTCTCCGAGATAATCTTTCCA 60.243 47.826 0.33 0.00 35.63 3.53
381 391 4.541779 CGTCTCCGAGATAATCTTTCCAG 58.458 47.826 0.33 0.00 35.63 3.86
382 392 4.303282 GTCTCCGAGATAATCTTTCCAGC 58.697 47.826 0.33 0.00 0.00 4.85
383 393 3.004839 TCTCCGAGATAATCTTTCCAGCG 59.995 47.826 0.00 0.00 0.00 5.18
406 416 1.338337 CAAGCTCCATCGACTCGGTAT 59.662 52.381 0.00 0.00 0.00 2.73
407 417 2.552743 CAAGCTCCATCGACTCGGTATA 59.447 50.000 0.00 0.00 0.00 1.47
408 418 2.152830 AGCTCCATCGACTCGGTATAC 58.847 52.381 0.00 0.00 0.00 1.47
414 430 3.683822 CCATCGACTCGGTATACTACCTC 59.316 52.174 2.25 0.00 46.81 3.85
434 450 1.153005 CCCCTCTGCAAGCTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
443 459 1.595466 CAAGCTCATCCCTGCATCTC 58.405 55.000 0.00 0.00 0.00 2.75
447 463 1.873069 GCTCATCCCTGCATCTCTTCG 60.873 57.143 0.00 0.00 0.00 3.79
451 467 0.250234 TCCCTGCATCTCTTCGGTTG 59.750 55.000 0.00 0.00 0.00 3.77
463 479 1.880027 CTTCGGTTGCTTACTGGCTTT 59.120 47.619 0.00 0.00 33.68 3.51
464 480 1.519408 TCGGTTGCTTACTGGCTTTC 58.481 50.000 0.00 0.00 33.68 2.62
469 485 2.558359 GTTGCTTACTGGCTTTCCATGT 59.442 45.455 0.00 0.00 42.51 3.21
471 487 4.235079 TGCTTACTGGCTTTCCATGTAT 57.765 40.909 0.00 0.00 42.51 2.29
477 493 2.357009 CTGGCTTTCCATGTATGCAGTC 59.643 50.000 0.00 0.00 42.51 3.51
478 494 2.025981 TGGCTTTCCATGTATGCAGTCT 60.026 45.455 0.00 0.00 37.47 3.24
479 495 2.615912 GGCTTTCCATGTATGCAGTCTC 59.384 50.000 0.00 0.00 0.00 3.36
481 497 2.602257 TTCCATGTATGCAGTCTCCG 57.398 50.000 0.00 0.00 0.00 4.63
482 498 1.485124 TCCATGTATGCAGTCTCCGT 58.515 50.000 0.00 0.00 0.00 4.69
483 499 1.831106 TCCATGTATGCAGTCTCCGTT 59.169 47.619 0.00 0.00 0.00 4.44
485 501 3.123804 CCATGTATGCAGTCTCCGTTAC 58.876 50.000 0.00 0.00 0.00 2.50
487 503 2.172679 TGTATGCAGTCTCCGTTACCA 58.827 47.619 0.00 0.00 0.00 3.25
488 504 2.764010 TGTATGCAGTCTCCGTTACCAT 59.236 45.455 0.00 0.00 0.00 3.55
489 505 3.196901 TGTATGCAGTCTCCGTTACCATT 59.803 43.478 0.00 0.00 0.00 3.16
490 506 2.380084 TGCAGTCTCCGTTACCATTC 57.620 50.000 0.00 0.00 0.00 2.67
514 534 1.075482 CAAGCACCATGGGTCCTGT 59.925 57.895 18.09 0.00 31.02 4.00
518 538 1.841302 GCACCATGGGTCCTGTCAGA 61.841 60.000 18.09 0.00 31.02 3.27
531 551 2.163412 CCTGTCAGACTCTTCTTCCTCG 59.837 54.545 0.00 0.00 0.00 4.63
534 554 3.752222 TGTCAGACTCTTCTTCCTCGTAC 59.248 47.826 1.31 0.00 0.00 3.67
554 574 2.353839 GCAACTGCAGCACCGTTG 60.354 61.111 15.27 18.79 41.59 4.10
555 575 3.110139 CAACTGCAGCACCGTTGT 58.890 55.556 15.27 0.00 34.77 3.32
562 582 2.665185 AGCACCGTTGTTCTCCGC 60.665 61.111 0.00 0.00 0.00 5.54
569 589 2.203084 TTGTTCTCCGCGGCACAA 60.203 55.556 23.51 24.33 0.00 3.33
570 590 1.820056 TTGTTCTCCGCGGCACAAA 60.820 52.632 25.77 13.83 0.00 2.83
575 595 2.904866 TCCGCGGCACAAAGCTTT 60.905 55.556 23.51 5.69 44.79 3.51
577 597 2.730604 CGCGGCACAAAGCTTTGG 60.731 61.111 35.65 26.35 44.79 3.28
599 619 1.949847 ATCCGACAGCCAACCTCTCG 61.950 60.000 0.00 0.00 32.57 4.04
602 622 1.444553 GACAGCCAACCTCTCGACG 60.445 63.158 0.00 0.00 0.00 5.12
604 624 2.992114 AGCCAACCTCTCGACGCT 60.992 61.111 0.00 0.00 0.00 5.07
645 665 2.598099 TCCCGCACGTCCACTACA 60.598 61.111 0.00 0.00 0.00 2.74
647 667 1.301087 CCCGCACGTCCACTACAAA 60.301 57.895 0.00 0.00 0.00 2.83
656 3890 4.261578 CGTCCACTACAAAGGAGGTTTA 57.738 45.455 0.00 0.00 35.61 2.01
659 3893 5.618236 GTCCACTACAAAGGAGGTTTAGTT 58.382 41.667 0.00 0.00 33.85 2.24
660 3894 5.469084 GTCCACTACAAAGGAGGTTTAGTTG 59.531 44.000 0.00 0.00 33.85 3.16
671 3905 0.170339 GTTTAGTTGTGCGCCCCATC 59.830 55.000 4.18 0.68 0.00 3.51
683 3917 1.689233 CCCCATCCTCCTCCGTTCA 60.689 63.158 0.00 0.00 0.00 3.18
691 3925 2.967201 TCCTCCTCCGTTCACAAAGTAA 59.033 45.455 0.00 0.00 0.00 2.24
692 3926 3.388676 TCCTCCTCCGTTCACAAAGTAAA 59.611 43.478 0.00 0.00 0.00 2.01
693 3927 4.041198 TCCTCCTCCGTTCACAAAGTAAAT 59.959 41.667 0.00 0.00 0.00 1.40
699 3933 8.970020 TCCTCCGTTCACAAAGTAAATACTATA 58.030 33.333 0.00 0.00 34.99 1.31
712 3946 7.736893 AGTAAATACTATAGCCAGTCCTTTGG 58.263 38.462 0.00 0.00 36.67 3.28
713 3947 6.576778 AAATACTATAGCCAGTCCTTTGGT 57.423 37.500 0.00 0.00 40.49 3.67
716 3950 2.981859 ATAGCCAGTCCTTTGGTACG 57.018 50.000 0.00 0.00 40.49 3.67
719 3953 1.833787 GCCAGTCCTTTGGTACGGGA 61.834 60.000 0.00 0.00 40.49 5.14
739 3973 1.440618 TTCTTCTGTGCCCCACCTTA 58.559 50.000 0.00 0.00 32.73 2.69
776 4010 1.601914 GGCGTGTTCATTGTCCAAACC 60.602 52.381 0.00 0.00 0.00 3.27
780 4014 1.950909 TGTTCATTGTCCAAACCGACC 59.049 47.619 0.00 0.00 31.35 4.79
784 4018 0.768622 ATTGTCCAAACCGACCCTGA 59.231 50.000 0.00 0.00 31.35 3.86
787 4021 0.883370 GTCCAAACCGACCCTGACAC 60.883 60.000 0.00 0.00 0.00 3.67
789 4023 1.599797 CAAACCGACCCTGACACCC 60.600 63.158 0.00 0.00 0.00 4.61
790 4024 3.173167 AAACCGACCCTGACACCCG 62.173 63.158 0.00 0.00 0.00 5.28
799 4033 1.475034 CCCTGACACCCGTATCATTGG 60.475 57.143 0.00 0.00 0.00 3.16
800 4034 1.209504 CCTGACACCCGTATCATTGGT 59.790 52.381 0.00 0.00 0.00 3.67
824 4058 4.373116 CCACCCGTGGTCTGGTCG 62.373 72.222 5.66 0.00 45.53 4.79
843 4077 4.760047 CCAACCGGGCTCGTCCTG 62.760 72.222 4.71 0.00 41.11 3.86
869 4103 0.957395 AGAATGCCACCGTTGAGCTG 60.957 55.000 0.00 0.00 0.00 4.24
888 4122 4.224594 AGCTGACTTCAGATGGAGAATTGA 59.775 41.667 10.54 0.00 46.59 2.57
1038 4301 5.990386 CAGTCATTTGATCATCCTACTGGAG 59.010 44.000 15.67 0.00 46.91 3.86
1046 4309 1.770658 CATCCTACTGGAGGGCATGAA 59.229 52.381 5.98 0.00 46.91 2.57
1062 4325 2.908688 TGAAGCTCACAGCAAGTACA 57.091 45.000 0.00 0.00 45.56 2.90
1085 4348 4.206375 TCTGCAACAAATTGGACAGAGAA 58.794 39.130 9.68 0.00 32.92 2.87
1106 4369 2.179427 TCAGCTGTATGCCACTGTACT 58.821 47.619 14.67 0.00 44.23 2.73
1108 4371 2.167281 CAGCTGTATGCCACTGTACTCT 59.833 50.000 5.25 0.00 44.23 3.24
1110 4373 2.796383 GCTGTATGCCACTGTACTCTCG 60.796 54.545 0.00 0.00 35.15 4.04
1137 4400 5.418524 TGGTTTGTATGCTTATGTTGCATCT 59.581 36.000 4.42 0.00 46.80 2.90
1150 4413 2.040330 GCATCTGCACCACCACAAA 58.960 52.632 0.00 0.00 41.59 2.83
1159 4422 5.012251 TCTGCACCACCACAAAACTACTATA 59.988 40.000 0.00 0.00 0.00 1.31
1160 4423 5.811190 TGCACCACCACAAAACTACTATAT 58.189 37.500 0.00 0.00 0.00 0.86
1162 4425 5.448632 GCACCACCACAAAACTACTATATGC 60.449 44.000 0.00 0.00 0.00 3.14
1185 4448 3.489416 TGACATCAAACGAAGACAAGACG 59.511 43.478 0.00 0.00 0.00 4.18
1194 4457 3.064207 CGAAGACAAGACGGGAAATGAA 58.936 45.455 0.00 0.00 0.00 2.57
1202 4465 4.568152 AGACGGGAAATGAAACAACAAG 57.432 40.909 0.00 0.00 0.00 3.16
1219 4482 8.415950 AACAACAAGGGTTACATTCATGAATA 57.584 30.769 20.32 3.66 34.87 1.75
1228 4491 4.434545 ACATTCATGAATAGCAGCCTCT 57.565 40.909 20.32 0.00 0.00 3.69
1240 4503 2.398252 CAGCCTCTGCATCTTTCTCA 57.602 50.000 0.00 0.00 41.13 3.27
1242 4505 2.419324 CAGCCTCTGCATCTTTCTCAAC 59.581 50.000 0.00 0.00 41.13 3.18
1247 4510 4.153835 CCTCTGCATCTTTCTCAACTCAAC 59.846 45.833 0.00 0.00 0.00 3.18
1249 4512 5.311265 TCTGCATCTTTCTCAACTCAACAT 58.689 37.500 0.00 0.00 0.00 2.71
1250 4513 5.766670 TCTGCATCTTTCTCAACTCAACATT 59.233 36.000 0.00 0.00 0.00 2.71
1252 4515 7.445096 TCTGCATCTTTCTCAACTCAACATTTA 59.555 33.333 0.00 0.00 0.00 1.40
1253 4516 7.939782 TGCATCTTTCTCAACTCAACATTTAA 58.060 30.769 0.00 0.00 0.00 1.52
1269 4538 9.554395 TCAACATTTAAAGATCCGAATAGCATA 57.446 29.630 0.00 0.00 0.00 3.14
1282 4551 4.216042 CGAATAGCATATCATGGCCAACAA 59.784 41.667 10.96 0.00 0.00 2.83
1286 4555 3.885297 AGCATATCATGGCCAACAACTAC 59.115 43.478 10.96 0.00 0.00 2.73
1298 4570 1.005394 CAACTACGTCCGCCCAGTT 60.005 57.895 0.00 0.00 0.00 3.16
1302 4574 0.742505 CTACGTCCGCCCAGTTCATA 59.257 55.000 0.00 0.00 0.00 2.15
1310 4582 2.224066 CCGCCCAGTTCATAAGACTAGG 60.224 54.545 0.00 0.00 0.00 3.02
1311 4583 2.693591 CGCCCAGTTCATAAGACTAGGA 59.306 50.000 0.00 0.00 0.00 2.94
1313 4585 4.523173 CGCCCAGTTCATAAGACTAGGATA 59.477 45.833 0.00 0.00 0.00 2.59
1320 4592 8.811017 CAGTTCATAAGACTAGGATATGATGGT 58.189 37.037 12.38 2.49 36.31 3.55
1333 4605 0.543277 TGATGGTCACCTGAGGATGC 59.457 55.000 4.99 0.00 0.00 3.91
1342 4614 1.133575 ACCTGAGGATGCATGAATGGG 60.134 52.381 4.99 3.40 0.00 4.00
1347 4619 4.595986 TGAGGATGCATGAATGGGATATG 58.404 43.478 2.46 0.00 0.00 1.78
1358 4630 4.889409 TGAATGGGATATGGCAGAAGAAAC 59.111 41.667 0.00 0.00 0.00 2.78
1359 4631 4.803329 ATGGGATATGGCAGAAGAAACT 57.197 40.909 0.00 0.00 0.00 2.66
1372 4644 0.825010 AGAAACTTGGCCTGCTGTGG 60.825 55.000 3.32 0.00 0.00 4.17
1374 4646 0.825010 AAACTTGGCCTGCTGTGGAG 60.825 55.000 3.32 0.00 0.00 3.86
1377 4649 2.816601 CTTGGCCTGCTGTGGAGGAG 62.817 65.000 3.32 0.00 37.40 3.69
1390 4662 2.026262 GTGGAGGAGGTAATGAAGCCAA 60.026 50.000 0.00 0.00 0.00 4.52
1394 4666 4.336280 GAGGAGGTAATGAAGCCAAACTT 58.664 43.478 0.00 0.00 42.98 2.66
1509 4787 2.496899 ACTTCAAGCCGATTGGTGAT 57.503 45.000 0.00 0.00 39.54 3.06
1625 4903 2.824936 TCGATGTAAACTACCCCGTTGA 59.175 45.455 0.00 0.00 0.00 3.18
1691 4969 2.656069 GCTCCTGTAGGGCCGTCAA 61.656 63.158 0.00 0.00 35.41 3.18
1701 4979 0.534203 GGGCCGTCAACTTCAGACAA 60.534 55.000 0.00 0.00 35.77 3.18
1718 4996 3.389329 AGACAATACTATGGCCAGACTGG 59.611 47.826 17.83 17.83 41.55 4.00
1725 5003 2.047179 GGCCAGACTGGAACCGAC 60.047 66.667 26.25 5.83 40.96 4.79
1728 5006 2.432628 CAGACTGGAACCGACGGC 60.433 66.667 15.39 0.00 0.00 5.68
1729 5007 3.692406 AGACTGGAACCGACGGCC 61.692 66.667 15.39 8.84 0.00 6.13
1800 5078 8.846943 TTGAATCTGTTAATTACAAGAGCTCA 57.153 30.769 17.77 0.00 36.02 4.26
1853 5158 3.497932 GGCTGCTGCTTCTGCTCG 61.498 66.667 15.64 0.00 40.48 5.03
1857 5162 1.633852 CTGCTGCTTCTGCTCGTTCC 61.634 60.000 0.00 0.00 40.48 3.62
1858 5163 1.669115 GCTGCTTCTGCTCGTTCCA 60.669 57.895 0.00 0.00 40.48 3.53
1872 5177 1.917303 CGTTCCACAAACAACAGCAAC 59.083 47.619 0.00 0.00 37.77 4.17
1878 5186 3.374745 CACAAACAACAGCAACCTCATC 58.625 45.455 0.00 0.00 0.00 2.92
1888 5196 2.012673 GCAACCTCATCTTAGGCACTG 58.987 52.381 0.00 0.00 41.52 3.66
1959 5273 4.797912 TTATCTACAGAGGAGGAGAGCA 57.202 45.455 0.00 0.00 0.00 4.26
1960 5274 3.901570 ATCTACAGAGGAGGAGAGCAT 57.098 47.619 0.00 0.00 0.00 3.79
1962 5276 5.534914 ATCTACAGAGGAGGAGAGCATAT 57.465 43.478 0.00 0.00 0.00 1.78
2100 5418 6.125029 AGGTGGATTTGGATCTGTTTATGAG 58.875 40.000 0.00 0.00 32.66 2.90
2124 5442 5.395879 GGGGAAATTAGGTGAAGAGAGAGTC 60.396 48.000 0.00 0.00 0.00 3.36
2187 5505 2.604912 TCTTGGCAGAGGTAGAGACA 57.395 50.000 0.00 0.00 0.00 3.41
2329 5647 0.827089 CCACAACAATGCCCCACTCA 60.827 55.000 0.00 0.00 0.00 3.41
2418 5736 5.520288 GTGCAGACGAAAGATAGCTCATTTA 59.480 40.000 0.00 0.00 0.00 1.40
2421 5739 6.644592 GCAGACGAAAGATAGCTCATTTAGAT 59.355 38.462 0.00 0.00 0.00 1.98
2482 5801 2.094675 CCAAAGTGGCTGATTTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
2763 6086 2.303890 TGAAGACATGCTCTCACACCAT 59.696 45.455 0.00 0.00 0.00 3.55
2892 6215 6.770746 AGCATAGAAACTGCAATTCTTCAT 57.229 33.333 16.89 5.80 42.15 2.57
3003 6344 1.493022 AGGTGAAATGGGCGCCTAATA 59.507 47.619 28.56 11.10 44.04 0.98
3013 6357 2.808543 GGGCGCCTAATAAGAAGACATG 59.191 50.000 28.56 0.00 0.00 3.21
3024 6368 4.900635 AAGAAGACATGCAACTTCGTTT 57.099 36.364 18.72 10.72 44.65 3.60
3025 6369 7.667043 ATAAGAAGACATGCAACTTCGTTTA 57.333 32.000 18.44 14.78 44.65 2.01
3028 6372 7.667043 AGAAGACATGCAACTTCGTTTATTA 57.333 32.000 18.72 0.00 44.65 0.98
3113 6460 7.004086 ACAGTGTGAAAAGAATAATTCCCAGA 58.996 34.615 0.00 0.00 0.00 3.86
3155 6508 2.967362 TGGTGAAGTTGTACCGCATAG 58.033 47.619 0.00 0.00 39.87 2.23
3288 6649 7.120138 GGAACATTGAATTCCAGAATTTTGCAT 59.880 33.333 7.05 0.82 44.42 3.96
3344 6725 5.509840 CGTAGGGATGTAAGGAGAAAGATGG 60.510 48.000 0.00 0.00 0.00 3.51
3345 6726 3.718956 AGGGATGTAAGGAGAAAGATGGG 59.281 47.826 0.00 0.00 0.00 4.00
3346 6727 3.716872 GGGATGTAAGGAGAAAGATGGGA 59.283 47.826 0.00 0.00 0.00 4.37
3347 6728 4.202409 GGGATGTAAGGAGAAAGATGGGAG 60.202 50.000 0.00 0.00 0.00 4.30
3348 6729 4.410555 GGATGTAAGGAGAAAGATGGGAGT 59.589 45.833 0.00 0.00 0.00 3.85
3349 6730 5.602978 GGATGTAAGGAGAAAGATGGGAGTA 59.397 44.000 0.00 0.00 0.00 2.59
3350 6731 6.271159 GGATGTAAGGAGAAAGATGGGAGTAT 59.729 42.308 0.00 0.00 0.00 2.12
3354 6735 6.987403 AAGGAGAAAGATGGGAGTATAGAC 57.013 41.667 0.00 0.00 0.00 2.59
3363 6744 3.845860 TGGGAGTATAGACCAGGATGAC 58.154 50.000 0.00 0.00 39.69 3.06
3366 6747 4.654262 GGGAGTATAGACCAGGATGACAAA 59.346 45.833 0.00 0.00 39.69 2.83
3375 6756 5.071788 AGACCAGGATGACAAACTTTAGACA 59.928 40.000 0.00 0.00 39.69 3.41
3377 6758 6.126409 ACCAGGATGACAAACTTTAGACAAA 58.874 36.000 0.00 0.00 39.69 2.83
3478 6860 9.533253 CATTAAATTGTAAATTTCTAGGCCAGG 57.467 33.333 5.01 0.00 0.00 4.45
3479 6861 5.598416 AATTGTAAATTTCTAGGCCAGGC 57.402 39.130 5.01 1.26 0.00 4.85
3522 6904 7.069208 ACATGTCACTATGTCAGTCTCATATGT 59.931 37.037 1.90 0.00 36.60 2.29
3571 6954 5.458041 AAAATTCAGCAGCAACACTACAT 57.542 34.783 0.00 0.00 0.00 2.29
3572 6955 6.573664 AAAATTCAGCAGCAACACTACATA 57.426 33.333 0.00 0.00 0.00 2.29
3573 6956 6.764308 AAATTCAGCAGCAACACTACATAT 57.236 33.333 0.00 0.00 0.00 1.78
3574 6957 7.864108 AAATTCAGCAGCAACACTACATATA 57.136 32.000 0.00 0.00 0.00 0.86
3575 6958 8.455903 AAATTCAGCAGCAACACTACATATAT 57.544 30.769 0.00 0.00 0.00 0.86
3603 6986 5.473504 TGCAAAGAAAAGTTGACTATCCTCC 59.526 40.000 0.00 0.00 0.00 4.30
3616 6999 3.584848 ACTATCCTCCTTCATATGTGGGC 59.415 47.826 14.33 0.00 0.00 5.36
3617 7000 1.891933 TCCTCCTTCATATGTGGGCA 58.108 50.000 14.33 4.36 0.00 5.36
3636 7019 3.290710 GCATGGGGCCATTACTATATGG 58.709 50.000 4.39 0.00 46.46 2.74
3657 7040 3.721706 GCCACAGGGTGAGGGGAG 61.722 72.222 0.00 0.00 35.23 4.30
3659 7042 3.011517 CACAGGGTGAGGGGAGGG 61.012 72.222 0.00 0.00 35.23 4.30
3699 7082 4.766404 GGATAAGTCCACTGGTTTGTTG 57.234 45.455 0.00 0.00 44.42 3.33
3700 7083 3.057526 GGATAAGTCCACTGGTTTGTTGC 60.058 47.826 0.00 0.00 44.42 4.17
3701 7084 1.111277 AAGTCCACTGGTTTGTTGCC 58.889 50.000 0.00 0.00 0.00 4.52
3702 7085 0.755327 AGTCCACTGGTTTGTTGCCC 60.755 55.000 0.00 0.00 0.00 5.36
3703 7086 1.456705 TCCACTGGTTTGTTGCCCC 60.457 57.895 0.00 0.00 0.00 5.80
3704 7087 2.506957 CCACTGGTTTGTTGCCCCC 61.507 63.158 0.00 0.00 0.00 5.40
3705 7088 1.760086 CACTGGTTTGTTGCCCCCA 60.760 57.895 0.00 0.00 0.00 4.96
3706 7089 1.120795 CACTGGTTTGTTGCCCCCAT 61.121 55.000 0.00 0.00 0.00 4.00
3707 7090 1.120795 ACTGGTTTGTTGCCCCCATG 61.121 55.000 0.00 0.00 0.00 3.66
3708 7091 1.074926 TGGTTTGTTGCCCCCATGT 60.075 52.632 0.00 0.00 0.00 3.21
3709 7092 1.118356 TGGTTTGTTGCCCCCATGTC 61.118 55.000 0.00 0.00 0.00 3.06
3710 7093 1.118356 GGTTTGTTGCCCCCATGTCA 61.118 55.000 0.00 0.00 0.00 3.58
3711 7094 0.755686 GTTTGTTGCCCCCATGTCAA 59.244 50.000 0.00 0.00 0.00 3.18
3712 7095 1.347378 GTTTGTTGCCCCCATGTCAAT 59.653 47.619 0.00 0.00 0.00 2.57
3713 7096 0.975135 TTGTTGCCCCCATGTCAATG 59.025 50.000 0.00 0.00 0.00 2.82
3714 7097 0.113972 TGTTGCCCCCATGTCAATGA 59.886 50.000 0.00 0.00 35.67 2.57
3715 7098 0.819582 GTTGCCCCCATGTCAATGAG 59.180 55.000 0.00 0.00 35.67 2.90
3716 7099 0.703488 TTGCCCCCATGTCAATGAGA 59.297 50.000 0.00 0.00 35.67 3.27
3717 7100 0.928505 TGCCCCCATGTCAATGAGAT 59.071 50.000 0.00 0.00 35.67 2.75
3718 7101 1.288633 TGCCCCCATGTCAATGAGATT 59.711 47.619 0.00 0.00 35.67 2.40
3725 7108 6.552350 CCCCCATGTCAATGAGATTAAAAGAT 59.448 38.462 0.00 0.00 35.67 2.40
3746 7129 9.892130 AAAGATAAAAGACGAATCCATTAGAGT 57.108 29.630 0.00 0.00 0.00 3.24
3762 7145 6.291849 CCATTAGAGTCGAATAAAAGCTGACG 60.292 42.308 0.00 0.00 34.82 4.35
3765 7148 1.062148 GTCGAATAAAAGCTGACGGCC 59.938 52.381 1.62 0.00 43.05 6.13
3767 7150 0.248094 GAATAAAAGCTGACGGCCGC 60.248 55.000 28.58 19.01 43.05 6.53
3776 7159 2.051804 CTGACGGCCGCAATTCATCC 62.052 60.000 28.58 3.65 0.00 3.51
3777 7160 3.168237 GACGGCCGCAATTCATCCG 62.168 63.158 28.58 0.00 45.04 4.18
3779 7162 2.715624 GGCCGCAATTCATCCGAC 59.284 61.111 0.00 0.00 0.00 4.79
3806 7189 4.218635 TCACTACACTGTGATCCTTCTGAC 59.781 45.833 15.86 0.00 41.43 3.51
3807 7190 4.021981 CACTACACTGTGATCCTTCTGACA 60.022 45.833 15.86 0.00 40.12 3.58
3814 7197 8.489489 ACACTGTGATCCTTCTGACATTAATAT 58.511 33.333 15.86 0.00 0.00 1.28
3815 7198 8.771766 CACTGTGATCCTTCTGACATTAATATG 58.228 37.037 0.32 0.00 37.79 1.78
3845 7228 6.267014 AGTCCAGCAGTGAAGTAACTAAACTA 59.733 38.462 0.00 0.00 0.00 2.24
3846 7229 6.927381 GTCCAGCAGTGAAGTAACTAAACTAA 59.073 38.462 0.00 0.00 0.00 2.24
3847 7230 7.603024 GTCCAGCAGTGAAGTAACTAAACTAAT 59.397 37.037 0.00 0.00 0.00 1.73
3849 7232 8.784043 CCAGCAGTGAAGTAACTAAACTAATTT 58.216 33.333 0.00 0.00 0.00 1.82
3850 7233 9.813080 CAGCAGTGAAGTAACTAAACTAATTTC 57.187 33.333 0.00 0.00 0.00 2.17
3890 7321 1.755380 AGTAGGTAATGGTGCCGACTC 59.245 52.381 0.00 0.00 40.61 3.36
3891 7322 1.479323 GTAGGTAATGGTGCCGACTCA 59.521 52.381 0.00 0.00 33.28 3.41
3911 7342 5.010719 ACTCAAGAGTTGGTACTTCGATGAA 59.989 40.000 5.16 0.00 38.83 2.57
3916 7347 7.745620 AGAGTTGGTACTTCGATGAAAATTT 57.254 32.000 5.16 0.00 33.84 1.82
3966 7397 2.624838 AGATGTGCACCTTTGGTTCAAG 59.375 45.455 15.69 0.00 29.65 3.02
3967 7398 0.459489 TGTGCACCTTTGGTTCAAGC 59.541 50.000 15.69 0.00 29.65 4.01
3975 7406 2.030363 CCTTTGGTTCAAGCGCAATGTA 60.030 45.455 11.47 0.00 0.00 2.29
3976 7407 3.551863 CCTTTGGTTCAAGCGCAATGTAA 60.552 43.478 11.47 2.37 0.00 2.41
3977 7408 2.987413 TGGTTCAAGCGCAATGTAAG 57.013 45.000 11.47 0.00 0.00 2.34
3978 7409 2.226330 TGGTTCAAGCGCAATGTAAGT 58.774 42.857 11.47 0.00 0.00 2.24
3979 7410 2.225491 TGGTTCAAGCGCAATGTAAGTC 59.775 45.455 11.47 0.00 0.00 3.01
3980 7411 2.495939 GTTCAAGCGCAATGTAAGTCG 58.504 47.619 11.47 0.00 0.00 4.18
3981 7412 2.073117 TCAAGCGCAATGTAAGTCGA 57.927 45.000 11.47 0.00 0.00 4.20
3982 7413 1.724623 TCAAGCGCAATGTAAGTCGAC 59.275 47.619 11.47 7.70 0.00 4.20
3983 7414 1.726791 CAAGCGCAATGTAAGTCGACT 59.273 47.619 13.58 13.58 0.00 4.18
3984 7415 1.350193 AGCGCAATGTAAGTCGACTG 58.650 50.000 20.85 7.39 0.00 3.51
3985 7416 0.370273 GCGCAATGTAAGTCGACTGG 59.630 55.000 20.85 6.08 0.00 4.00
3986 7417 1.990799 CGCAATGTAAGTCGACTGGA 58.009 50.000 20.85 7.66 0.00 3.86
3987 7418 2.333926 CGCAATGTAAGTCGACTGGAA 58.666 47.619 20.85 7.84 0.00 3.53
3988 7419 2.092211 CGCAATGTAAGTCGACTGGAAC 59.908 50.000 20.85 17.50 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.759581 AGTTGTCATCCAGCATTGTCTT 58.240 40.909 0.00 0.00 0.00 3.01
6 7 3.430042 AGTTGTCATCCAGCATTGTCT 57.570 42.857 0.00 0.00 0.00 3.41
9 10 8.663025 GTCATATATAGTTGTCATCCAGCATTG 58.337 37.037 0.00 0.00 0.00 2.82
10 11 8.600668 AGTCATATATAGTTGTCATCCAGCATT 58.399 33.333 0.00 0.00 0.00 3.56
11 12 8.143673 AGTCATATATAGTTGTCATCCAGCAT 57.856 34.615 0.00 0.00 0.00 3.79
12 13 7.544804 AGTCATATATAGTTGTCATCCAGCA 57.455 36.000 0.00 0.00 0.00 4.41
13 14 8.090831 TCAAGTCATATATAGTTGTCATCCAGC 58.909 37.037 5.26 0.00 0.00 4.85
38 39 2.483583 AGCACGACGATCTTCAGATC 57.516 50.000 0.00 6.73 45.60 2.75
39 40 2.534298 CAAGCACGACGATCTTCAGAT 58.466 47.619 0.00 0.00 37.51 2.90
40 41 1.982612 CAAGCACGACGATCTTCAGA 58.017 50.000 0.00 0.00 0.00 3.27
41 42 0.368227 GCAAGCACGACGATCTTCAG 59.632 55.000 0.00 0.00 0.00 3.02
42 43 1.014044 GGCAAGCACGACGATCTTCA 61.014 55.000 0.00 0.00 0.00 3.02
43 44 1.014044 TGGCAAGCACGACGATCTTC 61.014 55.000 0.00 0.00 0.00 2.87
44 45 0.391661 ATGGCAAGCACGACGATCTT 60.392 50.000 0.00 0.92 0.00 2.40
45 46 0.391661 AATGGCAAGCACGACGATCT 60.392 50.000 0.00 0.00 0.00 2.75
46 47 0.447801 AAATGGCAAGCACGACGATC 59.552 50.000 0.00 0.00 0.00 3.69
47 48 0.881118 AAAATGGCAAGCACGACGAT 59.119 45.000 0.00 0.00 0.00 3.73
48 49 0.665835 AAAAATGGCAAGCACGACGA 59.334 45.000 0.00 0.00 0.00 4.20
49 50 3.177883 AAAAATGGCAAGCACGACG 57.822 47.368 0.00 0.00 0.00 5.12
66 67 3.117663 AGGTCCCTGACTTGCACTAAAAA 60.118 43.478 0.00 0.00 32.47 1.94
67 68 2.441750 AGGTCCCTGACTTGCACTAAAA 59.558 45.455 0.00 0.00 32.47 1.52
68 69 2.038557 GAGGTCCCTGACTTGCACTAAA 59.961 50.000 0.00 0.00 32.47 1.85
69 70 1.623811 GAGGTCCCTGACTTGCACTAA 59.376 52.381 0.00 0.00 32.47 2.24
70 71 1.203187 AGAGGTCCCTGACTTGCACTA 60.203 52.381 0.00 0.00 32.47 2.74
71 72 0.472734 AGAGGTCCCTGACTTGCACT 60.473 55.000 0.00 0.00 32.47 4.40
72 73 0.398318 AAGAGGTCCCTGACTTGCAC 59.602 55.000 0.00 0.00 32.47 4.57
73 74 2.024176 TAAGAGGTCCCTGACTTGCA 57.976 50.000 0.00 0.00 32.47 4.08
74 75 3.636153 ATTAAGAGGTCCCTGACTTGC 57.364 47.619 0.00 0.00 32.47 4.01
75 76 4.263506 ACCAATTAAGAGGTCCCTGACTTG 60.264 45.833 0.00 0.00 30.79 3.16
76 77 3.916989 ACCAATTAAGAGGTCCCTGACTT 59.083 43.478 0.00 0.00 30.79 3.01
77 78 3.532102 ACCAATTAAGAGGTCCCTGACT 58.468 45.455 0.00 0.00 30.79 3.41
78 79 4.470304 AGTACCAATTAAGAGGTCCCTGAC 59.530 45.833 4.99 0.00 39.31 3.51
79 80 4.695606 AGTACCAATTAAGAGGTCCCTGA 58.304 43.478 4.99 0.00 39.31 3.86
80 81 6.749036 ATAGTACCAATTAAGAGGTCCCTG 57.251 41.667 4.99 0.00 39.31 4.45
81 82 8.017251 ACATATAGTACCAATTAAGAGGTCCCT 58.983 37.037 4.99 5.90 39.31 4.20
82 83 8.203681 ACATATAGTACCAATTAAGAGGTCCC 57.796 38.462 4.99 0.00 39.31 4.46
83 84 8.867097 TGACATATAGTACCAATTAAGAGGTCC 58.133 37.037 4.99 0.00 39.31 4.46
86 87 9.209175 GCTTGACATATAGTACCAATTAAGAGG 57.791 37.037 0.00 0.00 0.00 3.69
87 88 9.988815 AGCTTGACATATAGTACCAATTAAGAG 57.011 33.333 0.00 0.00 0.00 2.85
94 95 9.764363 CATAAGAAGCTTGACATATAGTACCAA 57.236 33.333 2.10 0.00 0.00 3.67
95 96 9.143155 TCATAAGAAGCTTGACATATAGTACCA 57.857 33.333 2.10 0.00 0.00 3.25
96 97 9.982651 TTCATAAGAAGCTTGACATATAGTACC 57.017 33.333 2.10 0.00 0.00 3.34
152 153 7.307751 CGCACTACTCTTCCTTATTCAAAACAA 60.308 37.037 0.00 0.00 0.00 2.83
160 161 3.195825 ACTGCGCACTACTCTTCCTTATT 59.804 43.478 5.66 0.00 0.00 1.40
165 166 1.202313 CCTACTGCGCACTACTCTTCC 60.202 57.143 5.66 0.00 0.00 3.46
180 181 0.531200 GTGGTAGTTGCTCGCCTACT 59.469 55.000 0.00 3.26 35.10 2.57
181 182 0.801067 CGTGGTAGTTGCTCGCCTAC 60.801 60.000 0.00 0.00 34.18 3.18
183 184 1.812686 TTCGTGGTAGTTGCTCGCCT 61.813 55.000 0.00 0.00 0.00 5.52
184 185 0.947180 TTTCGTGGTAGTTGCTCGCC 60.947 55.000 0.00 0.00 0.00 5.54
185 186 0.863144 TTTTCGTGGTAGTTGCTCGC 59.137 50.000 0.00 0.00 0.00 5.03
187 188 3.120304 GGTCATTTTCGTGGTAGTTGCTC 60.120 47.826 0.00 0.00 0.00 4.26
189 190 2.812011 AGGTCATTTTCGTGGTAGTTGC 59.188 45.455 0.00 0.00 0.00 4.17
190 191 3.813166 ACAGGTCATTTTCGTGGTAGTTG 59.187 43.478 0.00 0.00 0.00 3.16
192 193 3.399330 CACAGGTCATTTTCGTGGTAGT 58.601 45.455 0.00 0.00 0.00 2.73
193 194 2.159627 GCACAGGTCATTTTCGTGGTAG 59.840 50.000 0.00 0.00 0.00 3.18
194 195 2.147958 GCACAGGTCATTTTCGTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
195 196 0.951558 GCACAGGTCATTTTCGTGGT 59.048 50.000 0.00 0.00 0.00 4.16
196 197 0.240945 GGCACAGGTCATTTTCGTGG 59.759 55.000 0.00 0.00 0.00 4.94
198 199 3.412722 TGGCACAGGTCATTTTCGT 57.587 47.368 0.00 0.00 0.00 3.85
210 211 0.983467 TATCTTGGTCTGCTGGCACA 59.017 50.000 0.00 0.00 0.00 4.57
211 212 1.065854 ACTATCTTGGTCTGCTGGCAC 60.066 52.381 0.00 0.00 0.00 5.01
212 213 1.065926 CACTATCTTGGTCTGCTGGCA 60.066 52.381 0.00 0.00 0.00 4.92
222 223 5.316987 AGTTCCAAAAGGTCACTATCTTGG 58.683 41.667 0.00 0.00 35.65 3.61
224 225 7.016268 TCACTAGTTCCAAAAGGTCACTATCTT 59.984 37.037 0.00 0.00 0.00 2.40
251 252 6.425210 TGATAACATCCCAGGTCTCAATAG 57.575 41.667 0.00 0.00 0.00 1.73
252 253 6.558394 TCATGATAACATCCCAGGTCTCAATA 59.442 38.462 0.00 0.00 34.15 1.90
253 254 5.370584 TCATGATAACATCCCAGGTCTCAAT 59.629 40.000 0.00 0.00 34.15 2.57
254 255 4.721274 TCATGATAACATCCCAGGTCTCAA 59.279 41.667 0.00 0.00 34.15 3.02
255 256 4.297768 TCATGATAACATCCCAGGTCTCA 58.702 43.478 0.00 0.00 34.15 3.27
256 257 4.963318 TCATGATAACATCCCAGGTCTC 57.037 45.455 0.00 0.00 34.15 3.36
257 258 6.013898 CAGTATCATGATAACATCCCAGGTCT 60.014 42.308 16.97 3.01 34.15 3.85
258 259 6.169094 CAGTATCATGATAACATCCCAGGTC 58.831 44.000 16.97 0.74 34.15 3.85
260 261 6.013898 AGACAGTATCATGATAACATCCCAGG 60.014 42.308 16.97 3.66 34.15 4.45
261 262 7.002250 AGACAGTATCATGATAACATCCCAG 57.998 40.000 16.97 3.72 34.15 4.45
264 265 8.580720 ACAGTAGACAGTATCATGATAACATCC 58.419 37.037 16.97 4.72 34.15 3.51
268 269 9.847706 CCATACAGTAGACAGTATCATGATAAC 57.152 37.037 16.97 10.38 0.00 1.89
269 270 9.588096 ACCATACAGTAGACAGTATCATGATAA 57.412 33.333 16.97 0.00 0.00 1.75
271 272 8.484214 AACCATACAGTAGACAGTATCATGAT 57.516 34.615 13.81 13.81 0.00 2.45
272 273 7.898014 AACCATACAGTAGACAGTATCATGA 57.102 36.000 0.00 0.00 0.00 3.07
273 274 9.067986 TCTAACCATACAGTAGACAGTATCATG 57.932 37.037 0.00 0.00 0.00 3.07
274 275 9.815306 ATCTAACCATACAGTAGACAGTATCAT 57.185 33.333 0.00 0.00 0.00 2.45
280 281 8.346300 CACAGTATCTAACCATACAGTAGACAG 58.654 40.741 0.00 0.00 30.21 3.51
317 327 4.003648 GAGTGGTCAACCGATCAAAGATT 58.996 43.478 0.00 0.00 32.85 2.40
320 330 1.726791 CGAGTGGTCAACCGATCAAAG 59.273 52.381 0.00 0.00 32.85 2.77
321 331 1.606994 CCGAGTGGTCAACCGATCAAA 60.607 52.381 0.00 0.00 32.85 2.69
323 333 1.589630 CCGAGTGGTCAACCGATCA 59.410 57.895 0.00 0.00 39.43 2.92
328 338 1.292541 GACTCCCGAGTGGTCAACC 59.707 63.158 1.17 0.00 42.66 3.77
334 344 3.775654 GCCTGGACTCCCGAGTGG 61.776 72.222 1.17 0.00 42.66 4.00
339 349 4.394712 GTGGTGCCTGGACTCCCG 62.395 72.222 0.00 0.00 34.29 5.14
340 350 4.035102 GGTGGTGCCTGGACTCCC 62.035 72.222 0.00 0.00 0.00 4.30
361 371 3.004839 CGCTGGAAAGATTATCTCGGAGA 59.995 47.826 10.62 10.62 0.00 3.71
363 373 2.956333 TCGCTGGAAAGATTATCTCGGA 59.044 45.455 0.00 0.00 0.00 4.55
371 381 2.941720 GAGCTTGATCGCTGGAAAGATT 59.058 45.455 0.00 0.00 41.08 2.40
372 382 2.559440 GAGCTTGATCGCTGGAAAGAT 58.441 47.619 0.00 0.00 41.08 2.40
373 383 1.406069 GGAGCTTGATCGCTGGAAAGA 60.406 52.381 0.00 0.00 41.08 2.52
374 384 1.012841 GGAGCTTGATCGCTGGAAAG 58.987 55.000 0.00 0.00 41.08 2.62
375 385 0.324614 TGGAGCTTGATCGCTGGAAA 59.675 50.000 0.00 0.00 41.08 3.13
376 386 0.543277 ATGGAGCTTGATCGCTGGAA 59.457 50.000 0.00 0.00 41.08 3.53
377 387 0.105593 GATGGAGCTTGATCGCTGGA 59.894 55.000 0.00 0.00 41.08 3.86
378 388 1.220169 CGATGGAGCTTGATCGCTGG 61.220 60.000 13.43 0.00 41.08 4.85
379 389 0.249197 TCGATGGAGCTTGATCGCTG 60.249 55.000 18.63 0.21 41.08 5.18
380 390 0.249238 GTCGATGGAGCTTGATCGCT 60.249 55.000 18.63 0.00 44.33 4.93
381 391 0.249238 AGTCGATGGAGCTTGATCGC 60.249 55.000 18.63 14.65 41.02 4.58
382 392 1.764851 GAGTCGATGGAGCTTGATCG 58.235 55.000 17.76 17.76 42.29 3.69
383 393 1.601663 CCGAGTCGATGGAGCTTGATC 60.602 57.143 15.64 0.00 0.00 2.92
406 416 1.305886 TGCAGAGGGGAGAGGTAGTA 58.694 55.000 0.00 0.00 0.00 1.82
407 417 0.413832 TTGCAGAGGGGAGAGGTAGT 59.586 55.000 0.00 0.00 0.00 2.73
408 418 1.118838 CTTGCAGAGGGGAGAGGTAG 58.881 60.000 0.00 0.00 0.00 3.18
414 430 0.179051 GATGAGCTTGCAGAGGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
434 450 0.392193 AGCAACCGAAGAGATGCAGG 60.392 55.000 0.00 0.00 41.18 4.85
443 459 1.523758 AAGCCAGTAAGCAACCGAAG 58.476 50.000 0.00 0.00 34.23 3.79
447 463 1.616159 TGGAAAGCCAGTAAGCAACC 58.384 50.000 0.00 0.00 39.92 3.77
463 479 1.485124 ACGGAGACTGCATACATGGA 58.515 50.000 0.00 0.00 0.00 3.41
464 480 2.315925 AACGGAGACTGCATACATGG 57.684 50.000 0.00 0.00 0.00 3.66
469 485 3.449377 TGAATGGTAACGGAGACTGCATA 59.551 43.478 0.00 0.00 42.51 3.14
471 487 1.621317 TGAATGGTAACGGAGACTGCA 59.379 47.619 0.00 0.00 42.51 4.41
477 493 4.378459 GCTTGAAGTTGAATGGTAACGGAG 60.378 45.833 0.00 0.00 42.51 4.63
478 494 3.500680 GCTTGAAGTTGAATGGTAACGGA 59.499 43.478 0.00 0.00 42.51 4.69
479 495 3.252215 TGCTTGAAGTTGAATGGTAACGG 59.748 43.478 0.00 0.00 42.51 4.44
481 497 4.037446 TGGTGCTTGAAGTTGAATGGTAAC 59.963 41.667 0.00 0.00 0.00 2.50
482 498 4.211125 TGGTGCTTGAAGTTGAATGGTAA 58.789 39.130 0.00 0.00 0.00 2.85
483 499 3.826524 TGGTGCTTGAAGTTGAATGGTA 58.173 40.909 0.00 0.00 0.00 3.25
485 501 3.581755 CATGGTGCTTGAAGTTGAATGG 58.418 45.455 0.00 0.00 0.00 3.16
487 503 2.564062 CCCATGGTGCTTGAAGTTGAAT 59.436 45.455 11.73 0.00 0.00 2.57
488 504 1.962807 CCCATGGTGCTTGAAGTTGAA 59.037 47.619 11.73 0.00 0.00 2.69
489 505 1.133513 ACCCATGGTGCTTGAAGTTGA 60.134 47.619 11.73 0.00 32.98 3.18
490 506 1.270550 GACCCATGGTGCTTGAAGTTG 59.729 52.381 11.73 0.00 35.25 3.16
514 534 4.289238 AGTACGAGGAAGAAGAGTCTGA 57.711 45.455 0.00 0.00 33.05 3.27
518 538 2.891580 TGCAAGTACGAGGAAGAAGAGT 59.108 45.455 0.00 0.00 0.00 3.24
545 565 2.665185 GCGGAGAACAACGGTGCT 60.665 61.111 0.00 0.00 34.76 4.40
550 570 4.072088 GTGCCGCGGAGAACAACG 62.072 66.667 33.48 0.00 0.00 4.10
551 571 2.054140 TTTGTGCCGCGGAGAACAAC 62.054 55.000 33.48 16.15 32.54 3.32
554 574 2.556287 CTTTGTGCCGCGGAGAAC 59.444 61.111 33.48 23.26 0.00 3.01
555 575 3.353836 GCTTTGTGCCGCGGAGAA 61.354 61.111 33.48 16.04 35.15 2.87
577 597 0.530870 GAGGTTGGCTGTCGGATAGC 60.531 60.000 17.31 17.31 40.41 2.97
599 619 0.163788 CGTTGTTGATCCACAGCGTC 59.836 55.000 22.57 5.96 43.88 5.19
602 622 0.163788 CGTCGTTGTTGATCCACAGC 59.836 55.000 3.96 3.96 0.00 4.40
604 624 1.225376 GGCGTCGTTGTTGATCCACA 61.225 55.000 0.00 0.00 0.00 4.17
632 652 1.429463 CTCCTTTGTAGTGGACGTGC 58.571 55.000 0.00 0.00 0.00 5.34
636 656 5.224821 ACTAAACCTCCTTTGTAGTGGAC 57.775 43.478 0.00 0.00 0.00 4.02
637 657 5.131475 ACAACTAAACCTCCTTTGTAGTGGA 59.869 40.000 0.00 0.00 0.00 4.02
639 659 5.277828 GCACAACTAAACCTCCTTTGTAGTG 60.278 44.000 0.00 0.00 0.00 2.74
640 660 4.820173 GCACAACTAAACCTCCTTTGTAGT 59.180 41.667 0.00 0.00 0.00 2.73
641 661 4.084013 CGCACAACTAAACCTCCTTTGTAG 60.084 45.833 0.00 0.00 0.00 2.74
642 662 3.810941 CGCACAACTAAACCTCCTTTGTA 59.189 43.478 0.00 0.00 0.00 2.41
645 665 1.607148 GCGCACAACTAAACCTCCTTT 59.393 47.619 0.30 0.00 0.00 3.11
647 667 0.605589 GGCGCACAACTAAACCTCCT 60.606 55.000 10.83 0.00 0.00 3.69
656 3890 3.628646 GAGGATGGGGCGCACAACT 62.629 63.158 13.89 11.49 0.00 3.16
660 3894 4.554036 GAGGAGGATGGGGCGCAC 62.554 72.222 10.83 4.83 0.00 5.34
671 3905 3.396260 TTACTTTGTGAACGGAGGAGG 57.604 47.619 0.00 0.00 0.00 4.30
678 3912 8.415192 TGGCTATAGTATTTACTTTGTGAACG 57.585 34.615 0.84 0.00 37.73 3.95
683 3917 8.320338 AGGACTGGCTATAGTATTTACTTTGT 57.680 34.615 0.84 0.00 37.73 2.83
691 3925 6.239232 CGTACCAAAGGACTGGCTATAGTATT 60.239 42.308 0.84 0.00 40.45 1.89
692 3926 5.243283 CGTACCAAAGGACTGGCTATAGTAT 59.757 44.000 0.84 0.00 40.45 2.12
693 3927 4.581824 CGTACCAAAGGACTGGCTATAGTA 59.418 45.833 0.84 0.00 40.45 1.82
699 3933 1.677552 CCGTACCAAAGGACTGGCT 59.322 57.895 0.00 0.00 40.45 4.75
712 3946 1.653151 GGCACAGAAGAATCCCGTAC 58.347 55.000 0.00 0.00 0.00 3.67
713 3947 0.539986 GGGCACAGAAGAATCCCGTA 59.460 55.000 0.00 0.00 0.00 4.02
716 3950 0.681243 GTGGGGCACAGAAGAATCCC 60.681 60.000 0.00 0.00 34.08 3.85
719 3953 0.779997 AAGGTGGGGCACAGAAGAAT 59.220 50.000 0.00 0.00 35.86 2.40
739 3973 2.066262 CGCCAAAGTAGAACATGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
776 4010 1.317431 TGATACGGGTGTCAGGGTCG 61.317 60.000 0.00 0.00 0.00 4.79
780 4014 1.209504 ACCAATGATACGGGTGTCAGG 59.790 52.381 4.61 3.94 34.26 3.86
787 4021 2.504367 GATTCCCACCAATGATACGGG 58.496 52.381 0.00 0.00 38.34 5.28
789 4023 3.207265 TGGATTCCCACCAATGATACG 57.793 47.619 0.00 0.00 37.58 3.06
838 4072 1.559682 TGGCATTCTCCCTAACAGGAC 59.440 52.381 0.00 0.00 37.67 3.85
843 4077 0.252197 ACGGTGGCATTCTCCCTAAC 59.748 55.000 0.00 0.00 0.00 2.34
869 4103 5.927819 AGGATCAATTCTCCATCTGAAGTC 58.072 41.667 6.40 0.00 35.08 3.01
888 4122 1.487976 ACCATCAGCATCACGAAGGAT 59.512 47.619 0.00 0.00 0.00 3.24
942 4176 1.337384 ATCACCATGCCAGCTACCGA 61.337 55.000 0.00 0.00 0.00 4.69
943 4177 0.882042 GATCACCATGCCAGCTACCG 60.882 60.000 0.00 0.00 0.00 4.02
986 4220 5.706916 ACAGTTGCATTCATCAGATCAAAC 58.293 37.500 0.00 0.00 0.00 2.93
1038 4301 1.246056 TTGCTGTGAGCTTCATGCCC 61.246 55.000 0.00 0.00 42.97 5.36
1046 4309 2.934364 GCAGATGTACTTGCTGTGAGCT 60.934 50.000 9.38 0.00 42.97 4.09
1062 4325 4.401022 TCTCTGTCCAATTTGTTGCAGAT 58.599 39.130 12.15 0.00 33.33 2.90
1085 4348 2.768527 AGTACAGTGGCATACAGCTGAT 59.231 45.455 23.35 6.78 44.79 2.90
1106 4369 3.627395 AAGCATACAAACCATCCGAGA 57.373 42.857 0.00 0.00 0.00 4.04
1108 4371 4.776349 ACATAAGCATACAAACCATCCGA 58.224 39.130 0.00 0.00 0.00 4.55
1110 4373 5.043248 GCAACATAAGCATACAAACCATCC 58.957 41.667 0.00 0.00 0.00 3.51
1137 4400 2.428544 AGTAGTTTTGTGGTGGTGCA 57.571 45.000 0.00 0.00 0.00 4.57
1150 4413 7.489160 TCGTTTGATGTCAGCATATAGTAGTT 58.511 34.615 0.00 0.00 35.07 2.24
1159 4422 3.402110 TGTCTTCGTTTGATGTCAGCAT 58.598 40.909 0.00 0.00 38.18 3.79
1160 4423 2.832563 TGTCTTCGTTTGATGTCAGCA 58.167 42.857 0.00 0.00 0.00 4.41
1162 4425 4.375405 CGTCTTGTCTTCGTTTGATGTCAG 60.375 45.833 0.00 0.00 0.00 3.51
1185 4448 4.415881 AACCCTTGTTGTTTCATTTCCC 57.584 40.909 0.00 0.00 32.13 3.97
1194 4457 6.723298 TTCATGAATGTAACCCTTGTTGTT 57.277 33.333 3.38 0.00 35.87 2.83
1202 4465 4.022849 GGCTGCTATTCATGAATGTAACCC 60.023 45.833 27.59 18.29 32.50 4.11
1228 4491 6.395426 AAATGTTGAGTTGAGAAAGATGCA 57.605 33.333 0.00 0.00 0.00 3.96
1240 4503 8.398665 GCTATTCGGATCTTTAAATGTTGAGTT 58.601 33.333 0.00 0.00 0.00 3.01
1242 4505 7.919690 TGCTATTCGGATCTTTAAATGTTGAG 58.080 34.615 0.00 0.00 0.00 3.02
1249 4512 9.166173 CCATGATATGCTATTCGGATCTTTAAA 57.834 33.333 0.00 0.00 0.00 1.52
1250 4513 7.280876 GCCATGATATGCTATTCGGATCTTTAA 59.719 37.037 0.00 0.00 0.00 1.52
1252 4515 5.587844 GCCATGATATGCTATTCGGATCTTT 59.412 40.000 0.00 0.00 0.00 2.52
1253 4516 5.121811 GCCATGATATGCTATTCGGATCTT 58.878 41.667 0.00 0.00 0.00 2.40
1258 4521 2.989909 TGGCCATGATATGCTATTCGG 58.010 47.619 0.00 0.00 0.00 4.30
1269 4538 2.489938 ACGTAGTTGTTGGCCATGAT 57.510 45.000 6.09 0.00 37.78 2.45
1286 4555 0.174845 TCTTATGAACTGGGCGGACG 59.825 55.000 0.00 0.00 0.00 4.79
1298 4570 7.397476 GGTGACCATCATATCCTAGTCTTATGA 59.603 40.741 0.00 8.23 36.92 2.15
1302 4574 5.541868 CAGGTGACCATCATATCCTAGTCTT 59.458 44.000 3.63 0.00 0.00 3.01
1310 4582 4.829968 CATCCTCAGGTGACCATCATATC 58.170 47.826 3.63 0.00 0.00 1.63
1311 4583 3.008813 GCATCCTCAGGTGACCATCATAT 59.991 47.826 3.63 0.00 0.00 1.78
1313 4585 1.142465 GCATCCTCAGGTGACCATCAT 59.858 52.381 3.63 0.00 0.00 2.45
1320 4592 2.422377 CCATTCATGCATCCTCAGGTGA 60.422 50.000 0.00 0.00 0.00 4.02
1333 4605 4.659115 TCTTCTGCCATATCCCATTCATG 58.341 43.478 0.00 0.00 0.00 3.07
1342 4614 3.067320 GGCCAAGTTTCTTCTGCCATATC 59.933 47.826 0.00 0.00 38.73 1.63
1347 4619 0.600057 CAGGCCAAGTTTCTTCTGCC 59.400 55.000 5.01 9.96 39.17 4.85
1358 4630 2.360852 CCTCCACAGCAGGCCAAG 60.361 66.667 5.01 0.00 0.00 3.61
1359 4631 2.853542 TCCTCCACAGCAGGCCAA 60.854 61.111 5.01 0.00 0.00 4.52
1372 4644 3.956744 AGTTTGGCTTCATTACCTCCTC 58.043 45.455 0.00 0.00 0.00 3.71
1374 4646 4.321974 CCAAAGTTTGGCTTCATTACCTCC 60.322 45.833 21.39 0.00 45.17 4.30
1390 4662 2.758423 GGAAACCACAGTCACCAAAGTT 59.242 45.455 0.00 0.00 0.00 2.66
1625 4903 2.173519 CATCTGGGGTTGTTGCATTCT 58.826 47.619 0.00 0.00 0.00 2.40
1691 4969 4.716784 TCTGGCCATAGTATTGTCTGAAGT 59.283 41.667 5.51 0.00 0.00 3.01
1701 4979 2.706190 GGTTCCAGTCTGGCCATAGTAT 59.294 50.000 14.64 0.00 37.47 2.12
1718 4996 2.332654 AAGCAATGGCCGTCGGTTC 61.333 57.895 13.94 6.48 42.56 3.62
1725 5003 1.247419 TTACCCACAAGCAATGGCCG 61.247 55.000 0.00 0.00 42.56 6.13
1728 5006 1.626686 TGGTTACCCACAAGCAATGG 58.373 50.000 0.00 0.00 35.17 3.16
1729 5007 2.029110 CCTTGGTTACCCACAAGCAATG 60.029 50.000 0.00 0.00 42.96 2.82
1786 5064 7.750229 TGATGAAAACTGAGCTCTTGTAATT 57.250 32.000 16.19 11.84 0.00 1.40
1794 5072 3.365767 GCACCTTGATGAAAACTGAGCTC 60.366 47.826 6.82 6.82 0.00 4.09
1796 5074 2.294233 TGCACCTTGATGAAAACTGAGC 59.706 45.455 0.00 0.00 0.00 4.26
1800 5078 2.590821 AGCTGCACCTTGATGAAAACT 58.409 42.857 1.02 0.00 0.00 2.66
1853 5158 2.094234 AGGTTGCTGTTGTTTGTGGAAC 60.094 45.455 0.00 0.00 38.78 3.62
1857 5162 2.937469 TGAGGTTGCTGTTGTTTGTG 57.063 45.000 0.00 0.00 0.00 3.33
1858 5163 3.290710 AGATGAGGTTGCTGTTGTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
1872 5177 2.408271 TTGCAGTGCCTAAGATGAGG 57.592 50.000 13.72 0.00 39.88 3.86
1878 5186 1.133790 GCTGGAATTGCAGTGCCTAAG 59.866 52.381 25.43 0.00 0.00 2.18
1888 5196 6.813152 ACAACAATAACAATAGCTGGAATTGC 59.187 34.615 7.47 0.00 37.77 3.56
1920 5234 4.876107 AGATAAAGGGTGACAACAATAGCG 59.124 41.667 0.00 0.00 0.00 4.26
1962 5276 9.559732 TTGAAGTCTTCATCTTTCTTGTCATAA 57.440 29.630 15.95 0.00 39.84 1.90
2100 5418 4.471747 ACTCTCTCTTCACCTAATTTCCCC 59.528 45.833 0.00 0.00 0.00 4.81
2124 5442 0.934496 TTTCCAGACGTTTCACTGCG 59.066 50.000 0.00 0.00 33.40 5.18
2187 5505 3.758023 TGATGTGTTCGATGCTTCCAATT 59.242 39.130 0.00 0.00 0.00 2.32
2329 5647 2.869503 CTAGACCGCGTGCCCCAATT 62.870 60.000 4.92 0.00 0.00 2.32
2335 5653 0.249489 ATGATTCTAGACCGCGTGCC 60.249 55.000 4.92 0.00 0.00 5.01
2345 5663 7.991084 TTGGCAATATCCAGAATGATTCTAG 57.009 36.000 7.46 0.27 39.69 2.43
2442 5761 7.395489 ACTTTGGCATTGAAGTTCTCATCTAAT 59.605 33.333 4.17 0.00 32.43 1.73
2674 5994 5.556915 TCCTCGTAACAAATTGATGAGGTT 58.443 37.500 17.32 0.00 41.71 3.50
2763 6086 6.578163 TTCATCATTTGAATCACTTGCTCA 57.422 33.333 0.00 0.00 39.44 4.26
2892 6215 8.661352 TGACTGAATTTGCATCGATAAATCTA 57.339 30.769 0.00 0.00 0.00 1.98
3121 6468 6.534793 ACAACTTCACCAAACAATCAAACATC 59.465 34.615 0.00 0.00 0.00 3.06
3155 6508 3.531538 TGGTACTCCGCAGATGAAAATC 58.468 45.455 0.00 0.00 36.30 2.17
3288 6649 7.699709 TCCCCATCAGGTTCATAAAGTTATA 57.300 36.000 0.00 0.00 0.00 0.98
3292 6653 4.478317 TCATCCCCATCAGGTTCATAAAGT 59.522 41.667 0.00 0.00 0.00 2.66
3294 6655 4.689705 GCTCATCCCCATCAGGTTCATAAA 60.690 45.833 0.00 0.00 0.00 1.40
3329 6710 7.039574 GGTCTATACTCCCATCTTTCTCCTTAC 60.040 44.444 0.00 0.00 0.00 2.34
3344 6725 5.364157 AGTTTGTCATCCTGGTCTATACTCC 59.636 44.000 0.00 0.00 0.00 3.85
3345 6726 6.472686 AGTTTGTCATCCTGGTCTATACTC 57.527 41.667 0.00 0.00 0.00 2.59
3346 6727 6.875972 AAGTTTGTCATCCTGGTCTATACT 57.124 37.500 0.00 0.00 0.00 2.12
3347 6728 8.475639 TCTAAAGTTTGTCATCCTGGTCTATAC 58.524 37.037 0.00 0.00 0.00 1.47
3348 6729 8.475639 GTCTAAAGTTTGTCATCCTGGTCTATA 58.524 37.037 0.00 0.00 0.00 1.31
3349 6730 7.038302 TGTCTAAAGTTTGTCATCCTGGTCTAT 60.038 37.037 0.00 0.00 0.00 1.98
3350 6731 6.269077 TGTCTAAAGTTTGTCATCCTGGTCTA 59.731 38.462 0.00 0.00 0.00 2.59
3354 6735 6.633500 TTTGTCTAAAGTTTGTCATCCTGG 57.367 37.500 0.00 0.00 0.00 4.45
3413 6794 8.366671 AGCGTCATTAATCCTTTAGTATTGAC 57.633 34.615 0.00 0.00 36.44 3.18
3453 6835 8.204160 GCCTGGCCTAGAAATTTACAATTTAAT 58.796 33.333 7.66 0.00 0.00 1.40
3456 6838 5.104941 GGCCTGGCCTAGAAATTTACAATTT 60.105 40.000 30.42 0.00 46.69 1.82
3457 6839 4.405680 GGCCTGGCCTAGAAATTTACAATT 59.594 41.667 30.42 0.00 46.69 2.32
3478 6860 1.892474 TGTTCATTTTACTGGCCTGGC 59.108 47.619 11.05 11.05 0.00 4.85
3479 6861 3.511146 ACATGTTCATTTTACTGGCCTGG 59.489 43.478 14.82 4.64 0.00 4.45
3480 6862 4.218200 TGACATGTTCATTTTACTGGCCTG 59.782 41.667 8.29 8.29 0.00 4.85
3481 6863 4.218417 GTGACATGTTCATTTTACTGGCCT 59.782 41.667 3.32 0.00 36.32 5.19
3556 6939 6.017605 GCAAGAATATATGTAGTGTTGCTGCT 60.018 38.462 19.66 0.00 45.80 4.24
3574 6957 8.084684 GGATAGTCAACTTTTCTTTGCAAGAAT 58.915 33.333 0.00 0.00 46.15 2.40
3575 6958 7.285401 AGGATAGTCAACTTTTCTTTGCAAGAA 59.715 33.333 0.00 3.29 45.30 2.52
3585 6968 9.050601 CATATGAAGGAGGATAGTCAACTTTTC 57.949 37.037 0.00 0.00 0.00 2.29
3590 6973 6.226787 CCACATATGAAGGAGGATAGTCAAC 58.773 44.000 10.38 0.00 0.00 3.18
3603 6986 1.624336 CCCCATGCCCACATATGAAG 58.376 55.000 10.38 1.23 33.67 3.02
3637 7020 4.704833 CCCTCACCCTGTGGCGTG 62.705 72.222 0.00 0.00 33.87 5.34
3649 7032 4.421554 CAGCTCCCCCTCCCCTCA 62.422 72.222 0.00 0.00 0.00 3.86
3669 7052 3.441572 CAGTGGACTTATCCCAAAGCTTG 59.558 47.826 0.00 0.00 45.59 4.01
3671 7054 2.025887 CCAGTGGACTTATCCCAAAGCT 60.026 50.000 1.68 0.00 45.59 3.74
3676 7059 2.714250 ACAAACCAGTGGACTTATCCCA 59.286 45.455 18.40 0.00 45.59 4.37
3677 7060 3.434940 ACAAACCAGTGGACTTATCCC 57.565 47.619 18.40 0.00 45.59 3.85
3678 7061 3.057526 GCAACAAACCAGTGGACTTATCC 60.058 47.826 18.40 0.00 46.48 2.59
3679 7062 3.057526 GGCAACAAACCAGTGGACTTATC 60.058 47.826 18.40 0.00 0.00 1.75
3680 7063 2.890945 GGCAACAAACCAGTGGACTTAT 59.109 45.455 18.40 0.00 0.00 1.73
3681 7064 2.303175 GGCAACAAACCAGTGGACTTA 58.697 47.619 18.40 0.00 0.00 2.24
3682 7065 1.111277 GGCAACAAACCAGTGGACTT 58.889 50.000 18.40 5.77 0.00 3.01
3683 7066 0.755327 GGGCAACAAACCAGTGGACT 60.755 55.000 18.40 0.00 39.74 3.85
3684 7067 1.739667 GGGCAACAAACCAGTGGAC 59.260 57.895 18.40 0.00 39.74 4.02
3685 7068 1.456705 GGGGCAACAAACCAGTGGA 60.457 57.895 18.40 0.00 39.74 4.02
3686 7069 2.506957 GGGGGCAACAAACCAGTGG 61.507 63.158 7.91 7.91 39.74 4.00
3687 7070 1.120795 ATGGGGGCAACAAACCAGTG 61.121 55.000 0.00 0.00 39.31 3.66
3688 7071 1.120795 CATGGGGGCAACAAACCAGT 61.121 55.000 0.00 0.00 39.31 4.00
3689 7072 1.120795 ACATGGGGGCAACAAACCAG 61.121 55.000 0.00 0.00 39.31 4.00
3690 7073 1.074926 ACATGGGGGCAACAAACCA 60.075 52.632 0.00 0.00 40.07 3.67
3691 7074 1.118356 TGACATGGGGGCAACAAACC 61.118 55.000 0.00 0.00 39.74 3.27
3692 7075 0.755686 TTGACATGGGGGCAACAAAC 59.244 50.000 0.00 0.00 39.74 2.93
3693 7076 1.347050 CATTGACATGGGGGCAACAAA 59.653 47.619 0.00 0.00 39.74 2.83
3694 7077 0.975135 CATTGACATGGGGGCAACAA 59.025 50.000 0.00 0.00 39.74 2.83
3695 7078 0.113972 TCATTGACATGGGGGCAACA 59.886 50.000 0.00 0.00 39.74 3.33
3696 7079 0.819582 CTCATTGACATGGGGGCAAC 59.180 55.000 0.00 0.00 0.00 4.17
3697 7080 0.703488 TCTCATTGACATGGGGGCAA 59.297 50.000 0.00 0.00 30.75 4.52
3698 7081 0.928505 ATCTCATTGACATGGGGGCA 59.071 50.000 0.00 0.00 30.75 5.36
3699 7082 2.077687 AATCTCATTGACATGGGGGC 57.922 50.000 0.00 0.00 30.75 5.80
3700 7083 5.893255 TCTTTTAATCTCATTGACATGGGGG 59.107 40.000 0.00 0.00 30.75 5.40
3701 7084 7.592885 ATCTTTTAATCTCATTGACATGGGG 57.407 36.000 0.00 0.00 30.75 4.96
3725 7108 7.092137 TCGACTCTAATGGATTCGTCTTTTA 57.908 36.000 6.30 0.00 44.12 1.52
3730 7113 7.925703 TTTATTCGACTCTAATGGATTCGTC 57.074 36.000 6.30 0.00 44.12 4.20
3733 7116 8.279103 CAGCTTTTATTCGACTCTAATGGATTC 58.721 37.037 0.00 0.00 0.00 2.52
3746 7129 1.365699 GGCCGTCAGCTTTTATTCGA 58.634 50.000 0.00 0.00 43.05 3.71
3756 7139 2.652893 GATGAATTGCGGCCGTCAGC 62.653 60.000 28.70 20.94 42.60 4.26
3762 7145 2.112198 TGTCGGATGAATTGCGGCC 61.112 57.895 0.00 0.00 43.93 6.13
3765 7148 1.731709 TGAAGTGTCGGATGAATTGCG 59.268 47.619 0.00 0.00 41.07 4.85
3767 7150 4.929211 TGTAGTGAAGTGTCGGATGAATTG 59.071 41.667 0.00 0.00 0.00 2.32
3776 7159 3.349488 TCACAGTGTAGTGAAGTGTCG 57.651 47.619 0.00 0.00 44.92 4.35
3806 7189 6.648310 CACTGCTGGACTCCTACATATTAATG 59.352 42.308 0.00 0.00 39.17 1.90
3807 7190 6.554982 TCACTGCTGGACTCCTACATATTAAT 59.445 38.462 0.00 0.00 0.00 1.40
3814 7197 1.895798 CTTCACTGCTGGACTCCTACA 59.104 52.381 0.00 0.00 0.00 2.74
3815 7198 1.896465 ACTTCACTGCTGGACTCCTAC 59.104 52.381 0.00 0.00 0.00 3.18
3867 7298 3.131755 AGTCGGCACCATTACCTACTAAC 59.868 47.826 0.00 0.00 30.71 2.34
3890 7321 6.539649 TTTTCATCGAAGTACCAACTCTTG 57.460 37.500 0.00 0.00 33.75 3.02
3891 7322 7.745620 AATTTTCATCGAAGTACCAACTCTT 57.254 32.000 0.00 0.00 33.75 2.85
3927 7358 7.595875 TGCACATCTTGACATTATTTCAGTTTG 59.404 33.333 0.00 0.00 0.00 2.93
3937 7368 4.218200 CCAAAGGTGCACATCTTGACATTA 59.782 41.667 20.43 0.00 30.99 1.90
3966 7397 0.370273 CCAGTCGACTTACATTGCGC 59.630 55.000 17.26 0.00 0.00 6.09
3967 7398 1.990799 TCCAGTCGACTTACATTGCG 58.009 50.000 17.26 1.42 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.