Multiple sequence alignment - TraesCS1D01G013700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G013700 chr1D 100.000 3792 0 0 1 3792 6863266 6867057 0.000000e+00 7003.0
1 TraesCS1D01G013700 chr1D 97.306 891 24 0 2902 3792 411080737 411079847 0.000000e+00 1513.0
2 TraesCS1D01G013700 chr1D 86.545 877 66 29 857 1710 6817316 6818163 0.000000e+00 918.0
3 TraesCS1D01G013700 chr1D 88.905 703 63 8 1004 1704 6789463 6790152 0.000000e+00 852.0
4 TraesCS1D01G013700 chr1D 83.333 804 121 9 2109 2901 6818453 6819254 0.000000e+00 730.0
5 TraesCS1D01G013700 chr1D 85.102 443 64 2 1263 1704 6732809 6732368 5.780000e-123 451.0
6 TraesCS1D01G013700 chr1D 78.571 266 57 0 1251 1516 307217809 307218074 3.890000e-40 176.0
7 TraesCS1D01G013700 chr1D 90.909 66 6 0 1073 1138 6732881 6732816 5.220000e-14 89.8
8 TraesCS1D01G013700 chr1D 100.000 31 0 0 1828 1858 62856624 62856594 1.470000e-04 58.4
9 TraesCS1D01G013700 chr1A 91.820 2017 102 25 905 2901 8320628 8322601 0.000000e+00 2752.0
10 TraesCS1D01G013700 chr1A 87.126 870 68 22 857 1710 8311409 8312250 0.000000e+00 946.0
11 TraesCS1D01G013700 chr1A 88.079 755 58 13 970 1710 8295499 8296235 0.000000e+00 867.0
12 TraesCS1D01G013700 chr1A 83.816 760 118 4 2108 2864 8312538 8313295 0.000000e+00 717.0
13 TraesCS1D01G013700 chr1A 87.500 288 24 9 226 509 8320121 8320400 4.730000e-84 322.0
14 TraesCS1D01G013700 chr1A 89.216 204 14 6 592 788 8320399 8320601 8.130000e-62 248.0
15 TraesCS1D01G013700 chr1A 91.753 97 8 0 499 595 315264763 315264667 6.610000e-28 135.0
16 TraesCS1D01G013700 chr1A 97.297 37 1 0 1828 1864 58275885 58275921 3.160000e-06 63.9
17 TraesCS1D01G013700 chr1A 92.857 42 3 0 1828 1869 516456735 516456694 1.140000e-05 62.1
18 TraesCS1D01G013700 chr3D 97.643 891 21 0 2902 3792 402709435 402708545 0.000000e+00 1530.0
19 TraesCS1D01G013700 chr3D 97.368 38 1 0 1828 1865 611532942 611532905 8.790000e-07 65.8
20 TraesCS1D01G013700 chr3D 86.207 58 7 1 1828 1884 97920859 97920916 1.140000e-05 62.1
21 TraesCS1D01G013700 chr5D 97.419 891 23 0 2902 3792 511607097 511607987 0.000000e+00 1519.0
22 TraesCS1D01G013700 chr4D 97.419 891 23 0 2902 3792 473151400 473150510 0.000000e+00 1519.0
23 TraesCS1D01G013700 chr4D 97.194 891 25 0 2902 3792 302123901 302123011 0.000000e+00 1507.0
24 TraesCS1D01G013700 chr4D 93.778 225 14 0 1 225 94733798 94733574 4.690000e-89 339.0
25 TraesCS1D01G013700 chr4D 93.392 227 15 0 1 227 136610720 136610494 1.690000e-88 337.0
26 TraesCS1D01G013700 chr4D 92.000 225 18 0 1 225 11607077 11606853 2.200000e-82 316.0
27 TraesCS1D01G013700 chr4D 92.000 225 18 0 1 225 11623306 11623082 2.200000e-82 316.0
28 TraesCS1D01G013700 chr4D 94.737 38 2 0 1828 1865 49245714 49245751 4.090000e-05 60.2
29 TraesCS1D01G013700 chr4D 100.000 29 0 0 1828 1856 499389110 499389138 2.000000e-03 54.7
30 TraesCS1D01G013700 chr7D 97.306 891 24 0 2902 3792 90836136 90835246 0.000000e+00 1513.0
31 TraesCS1D01G013700 chr7D 92.444 225 17 0 1 225 311262236 311262460 4.730000e-84 322.0
32 TraesCS1D01G013700 chr7D 91.837 49 2 1 1819 1865 500925697 500925745 2.440000e-07 67.6
33 TraesCS1D01G013700 chr2D 97.306 891 24 0 2902 3792 44026826 44027716 0.000000e+00 1513.0
34 TraesCS1D01G013700 chr2D 97.306 891 24 0 2902 3792 45335014 45335904 0.000000e+00 1513.0
35 TraesCS1D01G013700 chr2D 97.309 892 22 2 2902 3792 121718977 121718087 0.000000e+00 1513.0
36 TraesCS1D01G013700 chr2D 92.000 225 18 0 1 225 131727593 131727817 2.200000e-82 316.0
37 TraesCS1D01G013700 chr2D 97.436 39 1 0 1828 1866 165479168 165479206 2.440000e-07 67.6
38 TraesCS1D01G013700 chr1B 93.812 905 46 3 2001 2901 9270447 9271345 0.000000e+00 1352.0
39 TraesCS1D01G013700 chr1B 89.447 796 58 15 920 1715 9269586 9270355 0.000000e+00 981.0
40 TraesCS1D01G013700 chr1B 89.423 728 61 10 1008 1731 8916176 8915461 0.000000e+00 904.0
41 TraesCS1D01G013700 chr1B 90.233 686 65 2 2035 2718 8914859 8914174 0.000000e+00 894.0
42 TraesCS1D01G013700 chr1B 89.645 676 68 2 2045 2718 9264155 9264830 0.000000e+00 859.0
43 TraesCS1D01G013700 chr1B 87.802 746 65 13 990 1725 9263121 9263850 0.000000e+00 850.0
44 TraesCS1D01G013700 chr1B 86.254 291 26 6 226 509 9268974 9269257 1.710000e-78 303.0
45 TraesCS1D01G013700 chr1B 89.447 199 19 2 592 788 9269256 9269454 2.260000e-62 250.0
46 TraesCS1D01G013700 chr1B 95.556 90 4 0 508 597 164832076 164832165 1.100000e-30 145.0
47 TraesCS1D01G013700 chr1B 90.476 105 9 1 505 608 61251249 61251353 1.840000e-28 137.0
48 TraesCS1D01G013700 chr1B 93.750 48 2 1 857 904 9262966 9263012 1.890000e-08 71.3
49 TraesCS1D01G013700 chr1B 91.489 47 4 0 1828 1874 531203046 531203000 8.790000e-07 65.8
50 TraesCS1D01G013700 chr4B 82.174 690 120 3 2107 2793 36713795 36713106 1.170000e-164 590.0
51 TraesCS1D01G013700 chr4B 82.029 690 121 3 2107 2793 36663849 36663160 5.460000e-163 584.0
52 TraesCS1D01G013700 chr4B 81.884 690 122 3 2107 2793 36762767 36762078 2.540000e-161 579.0
53 TraesCS1D01G013700 chr4B 86.199 442 61 0 1263 1704 36763341 36762900 2.650000e-131 479.0
54 TraesCS1D01G013700 chr4B 85.973 442 62 0 1263 1704 36664424 36663983 1.230000e-129 473.0
55 TraesCS1D01G013700 chr4B 85.973 442 62 0 1263 1704 36714370 36713929 1.230000e-129 473.0
56 TraesCS1D01G013700 chr4B 95.455 88 4 0 508 595 286079485 286079572 1.420000e-29 141.0
57 TraesCS1D01G013700 chr4B 92.632 95 6 1 508 602 44252097 44252004 6.610000e-28 135.0
58 TraesCS1D01G013700 chr4B 92.632 95 6 1 508 602 508232082 508232175 6.610000e-28 135.0
59 TraesCS1D01G013700 chr4B 89.535 86 7 2 1055 1138 36664516 36664431 1.440000e-19 108.0
60 TraesCS1D01G013700 chr4B 89.535 86 7 2 1055 1138 36714462 36714377 1.440000e-19 108.0
61 TraesCS1D01G013700 chr4B 89.535 86 7 2 1055 1138 36763433 36763348 1.440000e-19 108.0
62 TraesCS1D01G013700 chr6A 92.478 226 17 0 1 226 60769843 60769618 1.310000e-84 324.0
63 TraesCS1D01G013700 chr6A 92.000 225 18 0 1 225 47404589 47404365 2.200000e-82 316.0
64 TraesCS1D01G013700 chr6A 97.222 36 1 0 1830 1865 108251309 108251274 1.140000e-05 62.1
65 TraesCS1D01G013700 chr6D 92.105 228 18 0 1 228 439178068 439178295 4.730000e-84 322.0
66 TraesCS1D01G013700 chr6D 97.368 38 1 0 1828 1865 114156753 114156790 8.790000e-07 65.8
67 TraesCS1D01G013700 chr3B 93.684 95 5 1 501 595 249860880 249860973 1.420000e-29 141.0
68 TraesCS1D01G013700 chr3B 92.708 96 6 1 507 602 756059645 756059739 1.840000e-28 137.0
69 TraesCS1D01G013700 chr5A 94.444 90 5 0 505 594 413889749 413889838 5.110000e-29 139.0
70 TraesCS1D01G013700 chr5A 97.368 38 1 0 1828 1865 410509997 410510034 8.790000e-07 65.8
71 TraesCS1D01G013700 chr5A 97.368 38 1 0 1828 1865 451888811 451888848 8.790000e-07 65.8
72 TraesCS1D01G013700 chr2A 95.122 41 1 1 1829 1869 416012120 416012159 3.160000e-06 63.9
73 TraesCS1D01G013700 chr5B 93.023 43 2 1 1828 1870 518079567 518079526 1.140000e-05 62.1
74 TraesCS1D01G013700 chr5B 92.500 40 3 0 1828 1867 54496630 54496669 1.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G013700 chr1D 6863266 6867057 3791 False 7003.000000 7003 100.000000 1 3792 1 chr1D.!!$F2 3791
1 TraesCS1D01G013700 chr1D 411079847 411080737 890 True 1513.000000 1513 97.306000 2902 3792 1 chr1D.!!$R2 890
2 TraesCS1D01G013700 chr1D 6789463 6790152 689 False 852.000000 852 88.905000 1004 1704 1 chr1D.!!$F1 700
3 TraesCS1D01G013700 chr1D 6817316 6819254 1938 False 824.000000 918 84.939000 857 2901 2 chr1D.!!$F4 2044
4 TraesCS1D01G013700 chr1D 6732368 6732881 513 True 270.400000 451 88.005500 1073 1704 2 chr1D.!!$R3 631
5 TraesCS1D01G013700 chr1A 8320121 8322601 2480 False 1107.333333 2752 89.512000 226 2901 3 chr1A.!!$F4 2675
6 TraesCS1D01G013700 chr1A 8295499 8296235 736 False 867.000000 867 88.079000 970 1710 1 chr1A.!!$F1 740
7 TraesCS1D01G013700 chr1A 8311409 8313295 1886 False 831.500000 946 85.471000 857 2864 2 chr1A.!!$F3 2007
8 TraesCS1D01G013700 chr3D 402708545 402709435 890 True 1530.000000 1530 97.643000 2902 3792 1 chr3D.!!$R1 890
9 TraesCS1D01G013700 chr5D 511607097 511607987 890 False 1519.000000 1519 97.419000 2902 3792 1 chr5D.!!$F1 890
10 TraesCS1D01G013700 chr4D 473150510 473151400 890 True 1519.000000 1519 97.419000 2902 3792 1 chr4D.!!$R6 890
11 TraesCS1D01G013700 chr4D 302123011 302123901 890 True 1507.000000 1507 97.194000 2902 3792 1 chr4D.!!$R5 890
12 TraesCS1D01G013700 chr7D 90835246 90836136 890 True 1513.000000 1513 97.306000 2902 3792 1 chr7D.!!$R1 890
13 TraesCS1D01G013700 chr2D 44026826 44027716 890 False 1513.000000 1513 97.306000 2902 3792 1 chr2D.!!$F1 890
14 TraesCS1D01G013700 chr2D 45335014 45335904 890 False 1513.000000 1513 97.306000 2902 3792 1 chr2D.!!$F2 890
15 TraesCS1D01G013700 chr2D 121718087 121718977 890 True 1513.000000 1513 97.309000 2902 3792 1 chr2D.!!$R1 890
16 TraesCS1D01G013700 chr1B 8914174 8916176 2002 True 899.000000 904 89.828000 1008 2718 2 chr1B.!!$R2 1710
17 TraesCS1D01G013700 chr1B 9268974 9271345 2371 False 721.500000 1352 89.740000 226 2901 4 chr1B.!!$F4 2675
18 TraesCS1D01G013700 chr1B 9262966 9264830 1864 False 593.433333 859 90.399000 857 2718 3 chr1B.!!$F3 1861
19 TraesCS1D01G013700 chr4B 36713106 36714462 1356 True 390.333333 590 85.894000 1055 2793 3 chr4B.!!$R3 1738
20 TraesCS1D01G013700 chr4B 36762078 36763433 1355 True 388.666667 579 85.872667 1055 2793 3 chr4B.!!$R4 1738
21 TraesCS1D01G013700 chr4B 36663160 36664516 1356 True 388.333333 584 85.845667 1055 2793 3 chr4B.!!$R2 1738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 754 0.030235 AAAGTCGGCCGCTTTTGTTC 59.970 50.0 29.6 11.55 32.86 3.18 F
804 821 0.038526 AGACGTCAACCCGTGCTTAG 60.039 55.0 19.5 0.00 41.98 2.18 F
845 887 0.235665 AGAAGTTGAATGCGTGCGTG 59.764 50.0 0.0 0.00 0.00 5.34 F
2297 2873 0.468226 GTGTGGGAATCCGCCTATCA 59.532 55.0 0.0 0.00 42.73 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 3032 0.607217 TGAACGCCTCTCTGTACGGA 60.607 55.000 3.91 3.91 0.00 4.69 R
2597 3173 0.953471 CCGCACCAACCTCAAATCGA 60.953 55.000 0.00 0.00 0.00 3.59 R
2600 3176 1.004745 AGATCCGCACCAACCTCAAAT 59.995 47.619 0.00 0.00 0.00 2.32 R
3553 4145 1.154073 CGAGAAACGTCTCCGGTCC 60.154 63.158 0.00 0.00 46.66 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.712091 GGATACGTGCTACTGCTAAGT 57.288 47.619 0.00 0.00 40.67 2.24
44 45 3.372954 GGATACGTGCTACTGCTAAGTG 58.627 50.000 0.00 0.00 37.19 3.16
45 46 2.933495 TACGTGCTACTGCTAAGTGG 57.067 50.000 0.00 0.00 37.19 4.00
46 47 0.246635 ACGTGCTACTGCTAAGTGGG 59.753 55.000 0.00 0.00 37.19 4.61
47 48 0.460284 CGTGCTACTGCTAAGTGGGG 60.460 60.000 0.00 0.00 37.19 4.96
48 49 0.744771 GTGCTACTGCTAAGTGGGGC 60.745 60.000 0.00 0.00 37.19 5.80
49 50 0.909610 TGCTACTGCTAAGTGGGGCT 60.910 55.000 0.00 0.00 37.19 5.19
50 51 1.120530 GCTACTGCTAAGTGGGGCTA 58.879 55.000 0.00 0.00 37.19 3.93
51 52 1.069358 GCTACTGCTAAGTGGGGCTAG 59.931 57.143 0.00 0.00 37.19 3.42
52 53 1.069358 CTACTGCTAAGTGGGGCTAGC 59.931 57.143 6.04 6.04 37.19 3.42
53 54 1.147153 CTGCTAAGTGGGGCTAGCC 59.853 63.158 26.55 26.55 34.87 3.93
54 55 1.615124 TGCTAAGTGGGGCTAGCCA 60.615 57.895 34.09 13.29 37.98 4.75
55 56 0.988145 TGCTAAGTGGGGCTAGCCAT 60.988 55.000 34.09 16.63 37.98 4.40
56 57 0.183731 GCTAAGTGGGGCTAGCCATT 59.816 55.000 34.09 23.03 37.98 3.16
57 58 1.410224 GCTAAGTGGGGCTAGCCATTT 60.410 52.381 34.09 22.27 37.98 2.32
58 59 2.950418 GCTAAGTGGGGCTAGCCATTTT 60.950 50.000 34.09 22.58 37.98 1.82
59 60 1.852633 AAGTGGGGCTAGCCATTTTC 58.147 50.000 34.09 16.74 37.98 2.29
60 61 0.394352 AGTGGGGCTAGCCATTTTCG 60.394 55.000 34.09 0.00 37.98 3.46
61 62 1.752694 TGGGGCTAGCCATTTTCGC 60.753 57.895 34.09 15.25 37.98 4.70
62 63 2.490148 GGGGCTAGCCATTTTCGCC 61.490 63.158 34.09 20.32 39.98 5.54
63 64 3.120105 GGCTAGCCATTTTCGCCC 58.880 61.111 29.33 0.00 34.75 6.13
64 65 1.752694 GGCTAGCCATTTTCGCCCA 60.753 57.895 29.33 0.00 34.75 5.36
65 66 1.728490 GGCTAGCCATTTTCGCCCAG 61.728 60.000 29.33 0.00 34.75 4.45
66 67 1.032114 GCTAGCCATTTTCGCCCAGT 61.032 55.000 2.29 0.00 0.00 4.00
67 68 1.463674 CTAGCCATTTTCGCCCAGTT 58.536 50.000 0.00 0.00 0.00 3.16
68 69 1.401905 CTAGCCATTTTCGCCCAGTTC 59.598 52.381 0.00 0.00 0.00 3.01
69 70 0.539438 AGCCATTTTCGCCCAGTTCA 60.539 50.000 0.00 0.00 0.00 3.18
70 71 0.316841 GCCATTTTCGCCCAGTTCAA 59.683 50.000 0.00 0.00 0.00 2.69
71 72 1.270041 GCCATTTTCGCCCAGTTCAAA 60.270 47.619 0.00 0.00 0.00 2.69
72 73 2.403259 CCATTTTCGCCCAGTTCAAAC 58.597 47.619 0.00 0.00 0.00 2.93
73 74 2.035832 CCATTTTCGCCCAGTTCAAACT 59.964 45.455 0.00 0.00 40.60 2.66
74 75 3.492482 CCATTTTCGCCCAGTTCAAACTT 60.492 43.478 0.00 0.00 37.08 2.66
75 76 4.261825 CCATTTTCGCCCAGTTCAAACTTA 60.262 41.667 0.00 0.00 37.08 2.24
76 77 4.561735 TTTTCGCCCAGTTCAAACTTAG 57.438 40.909 0.00 0.00 37.08 2.18
77 78 1.519408 TCGCCCAGTTCAAACTTAGC 58.481 50.000 0.00 0.00 37.08 3.09
78 79 1.202710 TCGCCCAGTTCAAACTTAGCA 60.203 47.619 12.09 1.03 37.08 3.49
79 80 1.197721 CGCCCAGTTCAAACTTAGCAG 59.802 52.381 12.09 4.27 37.08 4.24
80 81 1.068264 GCCCAGTTCAAACTTAGCAGC 60.068 52.381 8.36 0.00 37.08 5.25
81 82 2.229792 CCCAGTTCAAACTTAGCAGCA 58.770 47.619 0.00 0.00 37.08 4.41
82 83 2.227388 CCCAGTTCAAACTTAGCAGCAG 59.773 50.000 0.00 0.00 37.08 4.24
83 84 2.351157 CCAGTTCAAACTTAGCAGCAGC 60.351 50.000 0.00 0.00 37.08 5.25
84 85 1.532868 AGTTCAAACTTAGCAGCAGCG 59.467 47.619 0.00 0.00 40.48 5.18
85 86 4.259474 AGTTCAAACTTAGCAGCAGCGC 62.259 50.000 0.00 0.00 40.48 5.92
96 97 2.556287 GCAGCGCGTTTTGCTAGT 59.444 55.556 19.96 0.00 41.72 2.57
97 98 1.785321 GCAGCGCGTTTTGCTAGTA 59.215 52.632 19.96 0.00 41.72 1.82
98 99 0.518559 GCAGCGCGTTTTGCTAGTAC 60.519 55.000 19.96 0.00 41.72 2.73
99 100 0.246757 CAGCGCGTTTTGCTAGTACG 60.247 55.000 8.43 0.00 41.72 3.67
103 104 2.437850 CGTTTTGCTAGTACGCGGT 58.562 52.632 12.47 0.00 0.00 5.68
104 105 1.616620 CGTTTTGCTAGTACGCGGTA 58.383 50.000 12.47 0.00 0.00 4.02
105 106 1.318491 CGTTTTGCTAGTACGCGGTAC 59.682 52.381 12.47 10.80 39.10 3.34
107 108 2.267188 TTTGCTAGTACGCGGTACTG 57.733 50.000 22.95 16.28 46.99 2.74
108 109 0.179156 TTGCTAGTACGCGGTACTGC 60.179 55.000 22.95 17.12 46.99 4.40
109 110 1.028330 TGCTAGTACGCGGTACTGCT 61.028 55.000 23.76 13.37 46.99 4.24
110 111 0.940126 GCTAGTACGCGGTACTGCTA 59.060 55.000 23.76 12.42 46.99 3.49
111 112 1.331756 GCTAGTACGCGGTACTGCTAA 59.668 52.381 23.76 9.26 46.99 3.09
112 113 2.223340 GCTAGTACGCGGTACTGCTAAA 60.223 50.000 23.76 6.74 46.99 1.85
113 114 3.731867 GCTAGTACGCGGTACTGCTAAAA 60.732 47.826 23.76 4.25 46.99 1.52
114 115 3.515330 AGTACGCGGTACTGCTAAAAT 57.485 42.857 23.76 6.06 46.06 1.82
115 116 3.184541 AGTACGCGGTACTGCTAAAATG 58.815 45.455 23.76 9.99 46.06 2.32
116 117 2.373540 ACGCGGTACTGCTAAAATGA 57.626 45.000 23.76 0.00 0.00 2.57
117 118 2.901249 ACGCGGTACTGCTAAAATGAT 58.099 42.857 23.76 0.00 0.00 2.45
118 119 4.049546 ACGCGGTACTGCTAAAATGATA 57.950 40.909 23.76 0.00 0.00 2.15
119 120 4.049186 ACGCGGTACTGCTAAAATGATAG 58.951 43.478 23.76 7.17 0.00 2.08
120 121 3.120991 CGCGGTACTGCTAAAATGATAGC 60.121 47.826 23.76 3.62 46.78 2.97
130 131 6.692232 GCTAAAATGATAGCAGTAGTACGG 57.308 41.667 5.39 0.00 46.06 4.02
131 132 6.214399 GCTAAAATGATAGCAGTAGTACGGT 58.786 40.000 2.34 2.81 46.06 4.83
132 133 6.700520 GCTAAAATGATAGCAGTAGTACGGTT 59.299 38.462 2.34 0.00 46.06 4.44
133 134 7.224167 GCTAAAATGATAGCAGTAGTACGGTTT 59.776 37.037 2.34 0.00 46.06 3.27
134 135 9.740239 CTAAAATGATAGCAGTAGTACGGTTTA 57.260 33.333 2.34 0.00 0.00 2.01
136 137 9.609346 AAAATGATAGCAGTAGTACGGTTTATT 57.391 29.630 2.34 0.00 0.00 1.40
137 138 9.609346 AAATGATAGCAGTAGTACGGTTTATTT 57.391 29.630 2.34 2.92 0.00 1.40
139 140 9.688592 ATGATAGCAGTAGTACGGTTTATTTAC 57.311 33.333 2.34 0.00 0.00 2.01
140 141 8.685427 TGATAGCAGTAGTACGGTTTATTTACA 58.315 33.333 2.34 0.00 0.00 2.41
141 142 8.862550 ATAGCAGTAGTACGGTTTATTTACAC 57.137 34.615 2.34 0.00 0.00 2.90
142 143 5.801947 AGCAGTAGTACGGTTTATTTACACG 59.198 40.000 2.34 0.00 0.00 4.49
143 144 5.499176 GCAGTAGTACGGTTTATTTACACGC 60.499 44.000 2.34 0.00 0.00 5.34
144 145 4.793216 AGTAGTACGGTTTATTTACACGCG 59.207 41.667 3.53 3.53 0.00 6.01
145 146 2.345341 AGTACGGTTTATTTACACGCGC 59.655 45.455 5.73 0.00 0.00 6.86
146 147 1.431496 ACGGTTTATTTACACGCGCT 58.569 45.000 5.73 0.00 0.00 5.92
147 148 2.605030 ACGGTTTATTTACACGCGCTA 58.395 42.857 5.73 0.00 0.00 4.26
148 149 2.345341 ACGGTTTATTTACACGCGCTAC 59.655 45.455 5.73 0.00 0.00 3.58
149 150 2.599973 CGGTTTATTTACACGCGCTACT 59.400 45.455 5.73 0.00 0.00 2.57
150 151 3.790820 CGGTTTATTTACACGCGCTACTA 59.209 43.478 5.73 0.00 0.00 1.82
151 152 4.316653 CGGTTTATTTACACGCGCTACTAC 60.317 45.833 5.73 0.00 0.00 2.73
152 153 4.800471 GGTTTATTTACACGCGCTACTACT 59.200 41.667 5.73 0.00 0.00 2.57
153 154 5.971202 GGTTTATTTACACGCGCTACTACTA 59.029 40.000 5.73 0.00 0.00 1.82
154 155 6.472163 GGTTTATTTACACGCGCTACTACTAA 59.528 38.462 5.73 0.00 0.00 2.24
155 156 7.305648 GGTTTATTTACACGCGCTACTACTAAG 60.306 40.741 5.73 0.00 0.00 2.18
156 157 4.685169 TTTACACGCGCTACTACTAAGT 57.315 40.909 5.73 0.00 39.91 2.24
157 158 5.794687 TTTACACGCGCTACTACTAAGTA 57.205 39.130 5.73 0.00 37.15 2.24
167 168 3.967203 ACTACTAAGTAGCAGTAGCGC 57.033 47.619 0.00 0.00 46.25 5.92
168 169 3.276857 ACTACTAAGTAGCAGTAGCGCA 58.723 45.455 11.47 0.00 46.25 6.09
169 170 3.884091 ACTACTAAGTAGCAGTAGCGCAT 59.116 43.478 11.47 0.00 46.25 4.73
170 171 4.261238 ACTACTAAGTAGCAGTAGCGCATG 60.261 45.833 11.47 6.54 46.25 4.06
171 172 6.432225 ACTACTAAGTAGCAGTAGCGCATGA 61.432 44.000 11.47 0.00 46.25 3.07
172 173 7.685614 ACTACTAAGTAGCAGTAGCGCATGAT 61.686 42.308 11.47 6.73 46.25 2.45
173 174 9.077538 ACTACTAAGTAGCAGTAGCGCATGATT 62.078 40.741 11.47 0.32 46.25 2.57
180 181 4.847633 GCAGTAGCGCATGATTTTATTCA 58.152 39.130 11.47 0.00 0.00 2.57
181 182 4.908156 GCAGTAGCGCATGATTTTATTCAG 59.092 41.667 11.47 0.00 0.00 3.02
182 183 4.908156 CAGTAGCGCATGATTTTATTCAGC 59.092 41.667 11.47 0.00 0.00 4.26
183 184 2.990941 AGCGCATGATTTTATTCAGCG 58.009 42.857 11.47 0.00 41.67 5.18
185 186 2.990941 CGCATGATTTTATTCAGCGCT 58.009 42.857 2.64 2.64 36.89 5.92
186 187 4.132529 CGCATGATTTTATTCAGCGCTA 57.867 40.909 10.99 0.00 36.89 4.26
187 188 3.902465 CGCATGATTTTATTCAGCGCTAC 59.098 43.478 10.99 0.00 36.89 3.58
188 189 4.319046 CGCATGATTTTATTCAGCGCTACT 60.319 41.667 10.99 0.00 36.89 2.57
190 191 4.536364 TGATTTTATTCAGCGCTACTGC 57.464 40.909 10.99 0.00 46.76 4.40
192 193 5.356426 TGATTTTATTCAGCGCTACTGCTA 58.644 37.500 10.99 0.00 45.23 3.49
193 194 5.815222 TGATTTTATTCAGCGCTACTGCTAA 59.185 36.000 10.99 1.18 45.23 3.09
194 195 5.718649 TTTTATTCAGCGCTACTGCTAAG 57.281 39.130 10.99 0.00 45.23 2.18
195 196 4.649088 TTATTCAGCGCTACTGCTAAGA 57.351 40.909 10.99 0.00 45.23 2.10
196 197 3.742433 ATTCAGCGCTACTGCTAAGAT 57.258 42.857 10.99 0.00 45.23 2.40
197 198 2.498807 TCAGCGCTACTGCTAAGATG 57.501 50.000 10.99 0.00 45.23 2.90
198 199 1.751351 TCAGCGCTACTGCTAAGATGT 59.249 47.619 10.99 0.00 45.23 3.06
199 200 2.166459 TCAGCGCTACTGCTAAGATGTT 59.834 45.455 10.99 0.00 45.23 2.71
200 201 2.283617 CAGCGCTACTGCTAAGATGTTG 59.716 50.000 10.99 0.00 45.23 3.33
201 202 2.093973 AGCGCTACTGCTAAGATGTTGT 60.094 45.455 8.99 0.00 45.14 3.32
202 203 2.029728 GCGCTACTGCTAAGATGTTGTG 59.970 50.000 0.00 0.00 36.97 3.33
203 204 3.254060 CGCTACTGCTAAGATGTTGTGT 58.746 45.455 0.00 0.00 36.97 3.72
204 205 4.421058 CGCTACTGCTAAGATGTTGTGTA 58.579 43.478 0.00 0.00 36.97 2.90
205 206 5.043903 CGCTACTGCTAAGATGTTGTGTAT 58.956 41.667 0.00 0.00 36.97 2.29
206 207 6.206498 CGCTACTGCTAAGATGTTGTGTATA 58.794 40.000 0.00 0.00 36.97 1.47
207 208 6.695713 CGCTACTGCTAAGATGTTGTGTATAA 59.304 38.462 0.00 0.00 36.97 0.98
208 209 7.096436 CGCTACTGCTAAGATGTTGTGTATAAG 60.096 40.741 0.00 0.00 36.97 1.73
209 210 7.169982 GCTACTGCTAAGATGTTGTGTATAAGG 59.830 40.741 0.00 0.00 36.03 2.69
210 211 6.947464 ACTGCTAAGATGTTGTGTATAAGGT 58.053 36.000 0.00 0.00 0.00 3.50
211 212 7.394816 ACTGCTAAGATGTTGTGTATAAGGTT 58.605 34.615 0.00 0.00 0.00 3.50
212 213 7.883311 ACTGCTAAGATGTTGTGTATAAGGTTT 59.117 33.333 0.00 0.00 0.00 3.27
213 214 8.630054 TGCTAAGATGTTGTGTATAAGGTTTT 57.370 30.769 0.00 0.00 0.00 2.43
214 215 9.073475 TGCTAAGATGTTGTGTATAAGGTTTTT 57.927 29.630 0.00 0.00 0.00 1.94
215 216 9.556030 GCTAAGATGTTGTGTATAAGGTTTTTC 57.444 33.333 0.00 0.00 0.00 2.29
234 235 9.770097 GGTTTTTCCTAGTAGTGTAAAGTAGTT 57.230 33.333 0.00 0.00 0.00 2.24
285 287 1.897423 CACCTGCACCCTCGTCATA 59.103 57.895 0.00 0.00 0.00 2.15
288 290 0.752658 CCTGCACCCTCGTCATATCA 59.247 55.000 0.00 0.00 0.00 2.15
289 291 1.539065 CCTGCACCCTCGTCATATCAC 60.539 57.143 0.00 0.00 0.00 3.06
322 325 1.754803 CCCGTGCCTCATTCTAGTACA 59.245 52.381 0.00 0.00 0.00 2.90
323 326 2.481449 CCCGTGCCTCATTCTAGTACAC 60.481 54.545 0.00 0.00 0.00 2.90
324 327 2.481449 CCGTGCCTCATTCTAGTACACC 60.481 54.545 0.00 0.00 0.00 4.16
325 328 2.165641 CGTGCCTCATTCTAGTACACCA 59.834 50.000 0.00 0.00 0.00 4.17
361 365 3.071671 CCCCTTGGCAATCCTTGTT 57.928 52.632 0.00 0.00 0.00 2.83
369 374 2.311542 TGGCAATCCTTGTTATCACCCT 59.688 45.455 0.00 0.00 0.00 4.34
453 463 3.197549 TGCTACCAGACATATGTTGCTGA 59.802 43.478 20.65 6.12 33.78 4.26
507 517 1.144298 GTGTTTGGGTCCTTGGTACCT 59.856 52.381 14.36 0.00 37.18 3.08
508 518 2.372837 GTGTTTGGGTCCTTGGTACCTA 59.627 50.000 14.36 4.36 37.18 3.08
509 519 2.372837 TGTTTGGGTCCTTGGTACCTAC 59.627 50.000 14.36 6.12 37.18 3.18
510 520 2.641321 GTTTGGGTCCTTGGTACCTACT 59.359 50.000 14.36 0.00 37.18 2.57
511 521 2.727429 TGGGTCCTTGGTACCTACTT 57.273 50.000 14.36 0.00 37.18 2.24
512 522 2.543635 TGGGTCCTTGGTACCTACTTC 58.456 52.381 14.36 1.16 37.18 3.01
513 523 2.113052 TGGGTCCTTGGTACCTACTTCT 59.887 50.000 14.36 0.00 37.18 2.85
514 524 3.179685 GGGTCCTTGGTACCTACTTCTT 58.820 50.000 14.36 0.00 37.18 2.52
515 525 3.197333 GGGTCCTTGGTACCTACTTCTTC 59.803 52.174 14.36 0.00 37.18 2.87
516 526 3.197333 GGTCCTTGGTACCTACTTCTTCC 59.803 52.174 14.36 2.23 33.97 3.46
517 527 3.094572 TCCTTGGTACCTACTTCTTCCG 58.905 50.000 14.36 0.00 0.00 4.30
518 528 2.830321 CCTTGGTACCTACTTCTTCCGT 59.170 50.000 14.36 0.00 0.00 4.69
519 529 3.260128 CCTTGGTACCTACTTCTTCCGTT 59.740 47.826 14.36 0.00 0.00 4.44
520 530 4.262765 CCTTGGTACCTACTTCTTCCGTTT 60.263 45.833 14.36 0.00 0.00 3.60
521 531 4.525912 TGGTACCTACTTCTTCCGTTTC 57.474 45.455 14.36 0.00 0.00 2.78
522 532 3.896888 TGGTACCTACTTCTTCCGTTTCA 59.103 43.478 14.36 0.00 0.00 2.69
523 533 4.344679 TGGTACCTACTTCTTCCGTTTCAA 59.655 41.667 14.36 0.00 0.00 2.69
524 534 5.163322 TGGTACCTACTTCTTCCGTTTCAAA 60.163 40.000 14.36 0.00 0.00 2.69
525 535 5.759763 GGTACCTACTTCTTCCGTTTCAAAA 59.240 40.000 4.06 0.00 0.00 2.44
526 536 6.429078 GGTACCTACTTCTTCCGTTTCAAAAT 59.571 38.462 4.06 0.00 0.00 1.82
527 537 7.603784 GGTACCTACTTCTTCCGTTTCAAAATA 59.396 37.037 4.06 0.00 0.00 1.40
528 538 7.668525 ACCTACTTCTTCCGTTTCAAAATAG 57.331 36.000 0.00 0.00 0.00 1.73
529 539 7.447594 ACCTACTTCTTCCGTTTCAAAATAGA 58.552 34.615 0.00 0.00 0.00 1.98
530 540 8.101419 ACCTACTTCTTCCGTTTCAAAATAGAT 58.899 33.333 0.00 0.00 0.00 1.98
531 541 8.391106 CCTACTTCTTCCGTTTCAAAATAGATG 58.609 37.037 0.00 0.00 0.00 2.90
532 542 7.979444 ACTTCTTCCGTTTCAAAATAGATGA 57.021 32.000 0.00 0.00 0.00 2.92
533 543 7.807680 ACTTCTTCCGTTTCAAAATAGATGAC 58.192 34.615 0.00 0.00 0.00 3.06
534 544 6.737254 TCTTCCGTTTCAAAATAGATGACC 57.263 37.500 0.00 0.00 0.00 4.02
535 545 5.646360 TCTTCCGTTTCAAAATAGATGACCC 59.354 40.000 0.00 0.00 0.00 4.46
536 546 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
537 547 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
538 548 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
539 549 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
540 550 6.314784 CGTTTCAAAATAGATGACCCAACTC 58.685 40.000 0.00 0.00 0.00 3.01
541 551 6.149474 CGTTTCAAAATAGATGACCCAACTCT 59.851 38.462 0.00 0.00 0.00 3.24
542 552 7.333423 CGTTTCAAAATAGATGACCCAACTCTA 59.667 37.037 0.00 0.00 0.00 2.43
543 553 9.178758 GTTTCAAAATAGATGACCCAACTCTAT 57.821 33.333 0.00 0.00 34.47 1.98
544 554 8.737168 TTCAAAATAGATGACCCAACTCTATG 57.263 34.615 0.00 0.00 33.57 2.23
545 555 6.767902 TCAAAATAGATGACCCAACTCTATGC 59.232 38.462 0.00 0.00 33.57 3.14
546 556 6.506538 AAATAGATGACCCAACTCTATGCT 57.493 37.500 0.00 0.00 33.57 3.79
547 557 7.618019 AAATAGATGACCCAACTCTATGCTA 57.382 36.000 0.00 0.00 33.57 3.49
548 558 7.618019 AATAGATGACCCAACTCTATGCTAA 57.382 36.000 0.00 0.00 33.57 3.09
549 559 5.957771 AGATGACCCAACTCTATGCTAAA 57.042 39.130 0.00 0.00 0.00 1.85
550 560 5.923204 AGATGACCCAACTCTATGCTAAAG 58.077 41.667 0.00 0.00 0.00 1.85
551 561 5.426833 AGATGACCCAACTCTATGCTAAAGT 59.573 40.000 0.00 0.00 0.00 2.66
552 562 5.499004 TGACCCAACTCTATGCTAAAGTT 57.501 39.130 0.00 0.00 33.63 2.66
553 563 6.614694 TGACCCAACTCTATGCTAAAGTTA 57.385 37.500 0.00 0.00 32.20 2.24
554 564 6.640518 TGACCCAACTCTATGCTAAAGTTAG 58.359 40.000 0.00 0.00 32.20 2.34
555 565 6.212791 TGACCCAACTCTATGCTAAAGTTAGT 59.787 38.462 0.32 0.00 32.20 2.24
556 566 7.398047 TGACCCAACTCTATGCTAAAGTTAGTA 59.602 37.037 0.32 0.00 32.20 1.82
557 567 7.554211 ACCCAACTCTATGCTAAAGTTAGTAC 58.446 38.462 0.32 0.00 32.20 2.73
558 568 7.179694 ACCCAACTCTATGCTAAAGTTAGTACA 59.820 37.037 0.00 0.00 32.20 2.90
559 569 8.038944 CCCAACTCTATGCTAAAGTTAGTACAA 58.961 37.037 0.00 0.00 32.20 2.41
560 570 9.431887 CCAACTCTATGCTAAAGTTAGTACAAA 57.568 33.333 0.00 0.00 32.20 2.83
567 577 8.904099 ATGCTAAAGTTAGTACAAAGTTGAGT 57.096 30.769 0.00 0.00 33.32 3.41
568 578 8.361592 TGCTAAAGTTAGTACAAAGTTGAGTC 57.638 34.615 0.00 0.00 33.32 3.36
569 579 7.982919 TGCTAAAGTTAGTACAAAGTTGAGTCA 59.017 33.333 0.00 0.00 33.32 3.41
570 580 8.989980 GCTAAAGTTAGTACAAAGTTGAGTCAT 58.010 33.333 0.00 0.00 33.32 3.06
579 589 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
580 590 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
581 591 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
582 592 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
583 593 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
584 594 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
585 595 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
586 596 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
587 597 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
588 598 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
589 599 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
590 600 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
623 633 4.906747 TGGCAATCTTTTTGGCCTAAAT 57.093 36.364 13.23 0.00 46.53 1.40
624 634 4.831107 TGGCAATCTTTTTGGCCTAAATC 58.169 39.130 13.23 0.00 46.53 2.17
663 673 6.919662 AGAATGTGTTGCTAATTTTCACTGTG 59.080 34.615 0.17 0.17 0.00 3.66
665 675 5.960113 TGTGTTGCTAATTTTCACTGTGTT 58.040 33.333 7.79 0.00 0.00 3.32
674 684 1.882912 TTCACTGTGTTGGCTGCTAG 58.117 50.000 7.79 0.00 0.00 3.42
690 700 0.102120 CTAGCTGCAGGAACGGAGAG 59.898 60.000 17.12 0.00 0.00 3.20
693 703 1.965754 GCTGCAGGAACGGAGAGGAT 61.966 60.000 17.12 0.00 0.00 3.24
703 713 1.522580 GGAGAGGATGGACGCTTGC 60.523 63.158 0.00 0.00 0.00 4.01
707 717 0.881118 GAGGATGGACGCTTGCAAAA 59.119 50.000 0.00 0.00 0.00 2.44
737 754 0.030235 AAAGTCGGCCGCTTTTGTTC 59.970 50.000 29.60 11.55 32.86 3.18
798 815 1.038280 AAAGAGAGACGTCAACCCGT 58.962 50.000 19.50 0.00 45.18 5.28
799 816 0.314302 AAGAGAGACGTCAACCCGTG 59.686 55.000 19.50 0.00 41.98 4.94
800 817 1.733399 GAGAGACGTCAACCCGTGC 60.733 63.158 19.50 0.00 41.98 5.34
801 818 2.143594 GAGAGACGTCAACCCGTGCT 62.144 60.000 19.50 1.42 41.98 4.40
802 819 1.300697 GAGACGTCAACCCGTGCTT 60.301 57.895 19.50 0.00 41.98 3.91
804 821 0.038526 AGACGTCAACCCGTGCTTAG 60.039 55.000 19.50 0.00 41.98 2.18
805 822 1.623973 GACGTCAACCCGTGCTTAGC 61.624 60.000 11.55 0.00 41.98 3.09
808 825 0.320421 GTCAACCCGTGCTTAGCTCA 60.320 55.000 5.60 0.00 0.00 4.26
811 828 1.606668 CAACCCGTGCTTAGCTCAAAA 59.393 47.619 5.60 0.00 0.00 2.44
812 829 1.523758 ACCCGTGCTTAGCTCAAAAG 58.476 50.000 5.60 0.00 0.00 2.27
830 872 6.340522 TCAAAAGCAAAGGAGGAAAAAGAAG 58.659 36.000 0.00 0.00 0.00 2.85
842 884 3.182372 GGAAAAAGAAGTTGAATGCGTGC 59.818 43.478 0.00 0.00 0.00 5.34
843 885 2.036556 AAAGAAGTTGAATGCGTGCG 57.963 45.000 0.00 0.00 0.00 5.34
844 886 0.944386 AAGAAGTTGAATGCGTGCGT 59.056 45.000 0.00 0.00 0.00 5.24
845 887 0.235665 AGAAGTTGAATGCGTGCGTG 59.764 50.000 0.00 0.00 0.00 5.34
846 888 0.725784 GAAGTTGAATGCGTGCGTGG 60.726 55.000 0.00 0.00 0.00 4.94
847 889 2.126888 GTTGAATGCGTGCGTGGG 60.127 61.111 0.00 0.00 0.00 4.61
848 890 2.281139 TTGAATGCGTGCGTGGGA 60.281 55.556 0.00 0.00 0.00 4.37
850 892 1.240641 TTGAATGCGTGCGTGGGAAT 61.241 50.000 0.00 0.00 0.00 3.01
851 893 1.062525 GAATGCGTGCGTGGGAATC 59.937 57.895 0.00 0.00 0.00 2.52
852 894 1.643868 GAATGCGTGCGTGGGAATCA 61.644 55.000 0.00 0.00 0.00 2.57
853 895 1.240641 AATGCGTGCGTGGGAATCAA 61.241 50.000 0.00 0.00 0.00 2.57
854 896 1.031571 ATGCGTGCGTGGGAATCAAT 61.032 50.000 0.00 0.00 0.00 2.57
855 897 1.062525 GCGTGCGTGGGAATCAATC 59.937 57.895 0.00 0.00 0.00 2.67
890 933 3.988976 TTCTTCCATGCTTAGCTCACT 57.011 42.857 5.60 0.00 0.00 3.41
897 940 4.590222 TCCATGCTTAGCTCACTCATGATA 59.410 41.667 5.60 5.17 37.34 2.15
898 941 4.689812 CCATGCTTAGCTCACTCATGATAC 59.310 45.833 5.60 0.00 37.34 2.24
992 1082 8.319057 AGTATAAATGGATGTCCTGTCAACTA 57.681 34.615 0.09 0.00 36.82 2.24
1039 1129 5.090139 TCATCAGTCTTCTTCTTCCTCCTT 58.910 41.667 0.00 0.00 0.00 3.36
1179 1289 4.631377 CACCTGTTGTACATGTTCGATCAT 59.369 41.667 2.30 3.07 0.00 2.45
1248 1368 4.058124 GCGACCATACTGAAGCAATGATA 58.942 43.478 0.00 0.00 0.00 2.15
1621 1741 2.494677 GCTAGAGGAGTTCTCGCCA 58.505 57.895 0.00 0.00 46.82 5.69
1655 1775 0.470341 GGTGGAAGAGATACCTGCCC 59.530 60.000 0.00 0.00 30.28 5.36
1660 1780 1.757699 GAAGAGATACCTGCCCTCGTT 59.242 52.381 0.00 0.00 32.52 3.85
1816 2331 3.876309 TCTTTGGCAACTACTTCCCTT 57.124 42.857 0.00 0.00 37.61 3.95
1855 2371 8.821147 TCTAAACGCTCTTGTATTTCTTTACA 57.179 30.769 0.00 0.00 0.00 2.41
2054 2629 1.285950 GAAAGTTGGGTGCCGAAGC 59.714 57.895 0.00 0.00 40.48 3.86
2066 2641 3.251004 GGTGCCGAAGCTATCTAAAATGG 59.749 47.826 0.00 0.00 40.80 3.16
2069 2644 3.304057 GCCGAAGCTATCTAAAATGGCAC 60.304 47.826 0.00 0.00 39.70 5.01
2147 2723 1.669760 GATCCACGGTGCAAACGGA 60.670 57.895 15.33 7.34 35.23 4.69
2273 2849 1.052124 TTGTGAAGGAGGTCGGTGGT 61.052 55.000 0.00 0.00 0.00 4.16
2294 2870 2.727392 CCGTGTGGGAATCCGCCTA 61.727 63.158 0.00 0.00 42.73 3.93
2297 2873 0.468226 GTGTGGGAATCCGCCTATCA 59.532 55.000 0.00 0.00 42.73 2.15
2303 2879 2.422945 GGGAATCCGCCTATCACCTTTT 60.423 50.000 0.00 0.00 0.00 2.27
2487 3063 0.794473 GGCGTTCAAAGGTACCTTCG 59.206 55.000 27.24 24.55 34.84 3.79
2546 3122 3.376078 GTCGCCGAGGGGTACACA 61.376 66.667 0.00 0.00 34.97 3.72
2589 3165 1.867363 ATTCCTAGCGAACCCAGACT 58.133 50.000 0.00 0.00 31.79 3.24
2597 3173 1.247567 CGAACCCAGACTTGCCAAAT 58.752 50.000 0.00 0.00 0.00 2.32
2600 3176 0.400213 ACCCAGACTTGCCAAATCGA 59.600 50.000 0.00 0.00 0.00 3.59
2660 3236 0.252742 CCTTCTACACCCCTGACCCT 60.253 60.000 0.00 0.00 0.00 4.34
2722 3300 8.107399 TCTAGATGTAACTTCTTTCTTCGACA 57.893 34.615 0.00 0.00 0.00 4.35
2729 3307 9.100554 TGTAACTTCTTTCTTCGACAATACAAA 57.899 29.630 0.00 0.00 0.00 2.83
2956 3547 5.724328 TGACTAGCTCGTTGATCAAAGATT 58.276 37.500 21.83 15.90 0.00 2.40
3083 3675 7.705325 ACACGATCGTTTAGTATTCTGCTATTT 59.295 33.333 20.14 0.00 0.00 1.40
3251 3843 2.681344 GGGTTGGCGTATTTCGAGATTT 59.319 45.455 0.00 0.00 42.86 2.17
3273 3865 2.678336 GGATTTGTCACTCCGATTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
3277 3869 0.179134 GTCACTCCGATTGTCCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
3460 4052 5.670792 AGTAACATACCGATGACAAAGGA 57.329 39.130 6.57 0.00 36.48 3.36
3487 4079 2.284150 CGTATGTTGTTATGCGGTCTGG 59.716 50.000 0.00 0.00 33.41 3.86
3553 4145 2.878406 CCAGGTTCCGCTATTGGTTATG 59.122 50.000 0.00 0.00 0.00 1.90
3599 4191 2.357009 TCTACATAGTTCTCGAACCCGC 59.643 50.000 6.20 0.00 42.06 6.13
3636 4228 8.050750 CGCTTAAAGTTTCGATGACAGTTATAG 58.949 37.037 0.00 0.00 0.00 1.31
3707 4299 1.407618 TGATCACGGACATAACGAGGG 59.592 52.381 0.00 0.00 34.93 4.30
3787 4379 0.984432 ATGGTTCCGGGGGTTATCGT 60.984 55.000 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068753 CCAGCGCTACTGCTATGCT 59.931 57.895 10.99 0.00 45.23 3.79
1 2 1.958205 CCCAGCGCTACTGCTATGC 60.958 63.158 10.99 0.00 45.23 3.14
2 3 0.877649 CACCCAGCGCTACTGCTATG 60.878 60.000 10.99 0.00 45.23 2.23
3 4 1.443407 CACCCAGCGCTACTGCTAT 59.557 57.895 10.99 0.00 45.23 2.97
4 5 2.892640 CACCCAGCGCTACTGCTA 59.107 61.111 10.99 0.00 45.23 3.49
14 15 2.890474 CACGTATCCGCACCCAGC 60.890 66.667 0.00 0.00 37.70 4.85
15 16 2.011741 TAGCACGTATCCGCACCCAG 62.012 60.000 0.00 0.00 37.70 4.45
16 17 2.053277 TAGCACGTATCCGCACCCA 61.053 57.895 0.00 0.00 37.70 4.51
17 18 1.590792 GTAGCACGTATCCGCACCC 60.591 63.158 0.00 0.00 37.70 4.61
18 19 0.870307 CAGTAGCACGTATCCGCACC 60.870 60.000 0.00 0.00 37.70 5.01
19 20 1.480219 GCAGTAGCACGTATCCGCAC 61.480 60.000 0.00 0.00 41.58 5.34
20 21 1.226859 GCAGTAGCACGTATCCGCA 60.227 57.895 0.00 0.00 41.58 5.69
21 22 0.309922 TAGCAGTAGCACGTATCCGC 59.690 55.000 0.00 0.00 45.49 5.54
22 23 2.033049 ACTTAGCAGTAGCACGTATCCG 59.967 50.000 0.00 0.00 45.49 4.18
23 24 3.372954 CACTTAGCAGTAGCACGTATCC 58.627 50.000 0.00 0.00 45.49 2.59
24 25 3.372954 CCACTTAGCAGTAGCACGTATC 58.627 50.000 0.00 0.00 45.49 2.24
25 26 2.100916 CCCACTTAGCAGTAGCACGTAT 59.899 50.000 0.00 0.00 45.49 3.06
26 27 1.475280 CCCACTTAGCAGTAGCACGTA 59.525 52.381 0.00 0.00 45.49 3.57
27 28 0.246635 CCCACTTAGCAGTAGCACGT 59.753 55.000 0.00 0.00 45.49 4.49
28 29 0.460284 CCCCACTTAGCAGTAGCACG 60.460 60.000 0.00 0.00 45.49 5.34
29 30 0.744771 GCCCCACTTAGCAGTAGCAC 60.745 60.000 0.00 0.00 45.49 4.40
30 31 0.909610 AGCCCCACTTAGCAGTAGCA 60.910 55.000 0.00 0.00 45.49 3.49
31 32 1.069358 CTAGCCCCACTTAGCAGTAGC 59.931 57.143 0.00 0.00 42.56 3.58
32 33 1.069358 GCTAGCCCCACTTAGCAGTAG 59.931 57.143 2.29 0.00 35.76 2.57
33 34 1.120530 GCTAGCCCCACTTAGCAGTA 58.879 55.000 2.29 0.00 35.76 2.74
34 35 1.627297 GGCTAGCCCCACTTAGCAGT 61.627 60.000 24.19 0.00 37.30 4.40
35 36 1.147153 GGCTAGCCCCACTTAGCAG 59.853 63.158 24.19 0.00 37.30 4.24
36 37 0.988145 ATGGCTAGCCCCACTTAGCA 60.988 55.000 30.81 9.30 37.79 3.49
37 38 0.183731 AATGGCTAGCCCCACTTAGC 59.816 55.000 30.81 2.95 37.79 3.09
38 39 2.736670 AAATGGCTAGCCCCACTTAG 57.263 50.000 30.81 0.00 37.79 2.18
39 40 2.682563 CGAAAATGGCTAGCCCCACTTA 60.683 50.000 30.81 11.72 37.79 2.24
40 41 1.852633 GAAAATGGCTAGCCCCACTT 58.147 50.000 30.81 17.83 37.79 3.16
41 42 0.394352 CGAAAATGGCTAGCCCCACT 60.394 55.000 30.81 13.09 37.79 4.00
42 43 2.004808 GCGAAAATGGCTAGCCCCAC 62.005 60.000 30.81 15.68 37.79 4.61
43 44 1.752694 GCGAAAATGGCTAGCCCCA 60.753 57.895 30.81 14.18 39.65 4.96
44 45 2.490148 GGCGAAAATGGCTAGCCCC 61.490 63.158 30.81 18.42 41.81 5.80
45 46 3.120105 GGCGAAAATGGCTAGCCC 58.880 61.111 30.81 13.89 41.81 5.19
46 47 1.728490 CTGGGCGAAAATGGCTAGCC 61.728 60.000 27.71 27.71 46.51 3.93
47 48 1.032114 ACTGGGCGAAAATGGCTAGC 61.032 55.000 6.04 6.04 45.22 3.42
48 49 1.401905 GAACTGGGCGAAAATGGCTAG 59.598 52.381 0.00 0.00 46.47 3.42
49 50 1.271652 TGAACTGGGCGAAAATGGCTA 60.272 47.619 0.00 0.00 34.31 3.93
50 51 0.539438 TGAACTGGGCGAAAATGGCT 60.539 50.000 0.00 0.00 34.31 4.75
51 52 0.316841 TTGAACTGGGCGAAAATGGC 59.683 50.000 0.00 0.00 0.00 4.40
52 53 2.035832 AGTTTGAACTGGGCGAAAATGG 59.964 45.455 0.00 0.00 37.98 3.16
53 54 3.369546 AGTTTGAACTGGGCGAAAATG 57.630 42.857 0.00 0.00 37.98 2.32
54 55 4.558697 GCTAAGTTTGAACTGGGCGAAAAT 60.559 41.667 0.00 0.00 39.66 1.82
55 56 3.243267 GCTAAGTTTGAACTGGGCGAAAA 60.243 43.478 0.00 0.00 39.66 2.29
56 57 2.292292 GCTAAGTTTGAACTGGGCGAAA 59.708 45.455 0.00 0.00 39.66 3.46
57 58 1.877443 GCTAAGTTTGAACTGGGCGAA 59.123 47.619 0.00 0.00 39.66 4.70
58 59 1.202710 TGCTAAGTTTGAACTGGGCGA 60.203 47.619 12.95 4.47 39.66 5.54
59 60 1.197721 CTGCTAAGTTTGAACTGGGCG 59.802 52.381 12.95 7.32 39.66 6.13
60 61 1.068264 GCTGCTAAGTTTGAACTGGGC 60.068 52.381 11.70 11.70 39.66 5.36
61 62 2.227388 CTGCTGCTAAGTTTGAACTGGG 59.773 50.000 0.00 0.00 39.66 4.45
62 63 2.351157 GCTGCTGCTAAGTTTGAACTGG 60.351 50.000 8.53 0.00 36.34 4.00
63 64 2.663879 CGCTGCTGCTAAGTTTGAACTG 60.664 50.000 14.03 0.00 36.80 3.16
64 65 1.532868 CGCTGCTGCTAAGTTTGAACT 59.467 47.619 14.03 0.00 37.75 3.01
65 66 1.955762 CGCTGCTGCTAAGTTTGAAC 58.044 50.000 14.03 0.00 36.97 3.18
66 67 0.238289 GCGCTGCTGCTAAGTTTGAA 59.762 50.000 14.03 0.00 36.97 2.69
67 68 1.868997 GCGCTGCTGCTAAGTTTGA 59.131 52.632 14.03 0.00 36.97 2.69
68 69 1.510623 CGCGCTGCTGCTAAGTTTG 60.511 57.895 14.03 0.00 36.97 2.93
69 70 1.507141 AACGCGCTGCTGCTAAGTTT 61.507 50.000 5.73 0.00 36.97 2.66
70 71 1.507141 AAACGCGCTGCTGCTAAGTT 61.507 50.000 5.73 12.82 36.97 2.66
71 72 1.507141 AAAACGCGCTGCTGCTAAGT 61.507 50.000 5.73 7.69 36.97 2.24
72 73 1.061799 CAAAACGCGCTGCTGCTAAG 61.062 55.000 5.73 7.08 36.97 2.18
73 74 1.082169 CAAAACGCGCTGCTGCTAA 60.082 52.632 5.73 0.00 36.97 3.09
74 75 2.555782 CAAAACGCGCTGCTGCTA 59.444 55.556 5.73 0.00 36.97 3.49
75 76 4.988486 GCAAAACGCGCTGCTGCT 62.988 61.111 18.06 0.00 35.62 4.24
76 77 4.988486 AGCAAAACGCGCTGCTGC 62.988 61.111 24.71 19.12 46.97 5.25
85 86 1.318491 GTACCGCGTACTAGCAAAACG 59.682 52.381 4.92 0.00 36.25 3.60
86 87 2.343544 CAGTACCGCGTACTAGCAAAAC 59.656 50.000 17.07 0.00 46.08 2.43
87 88 2.598589 CAGTACCGCGTACTAGCAAAA 58.401 47.619 17.07 0.00 46.08 2.44
88 89 1.733389 GCAGTACCGCGTACTAGCAAA 60.733 52.381 22.13 0.00 46.08 3.68
89 90 0.179156 GCAGTACCGCGTACTAGCAA 60.179 55.000 22.13 0.00 46.08 3.91
90 91 1.028330 AGCAGTACCGCGTACTAGCA 61.028 55.000 25.10 0.00 46.08 3.49
91 92 0.940126 TAGCAGTACCGCGTACTAGC 59.060 55.000 17.07 19.35 46.08 3.42
92 93 3.680642 TTTAGCAGTACCGCGTACTAG 57.319 47.619 17.07 13.42 46.08 2.57
93 94 4.096231 TCATTTTAGCAGTACCGCGTACTA 59.904 41.667 17.07 5.54 46.08 1.82
95 96 3.181397 TCATTTTAGCAGTACCGCGTAC 58.819 45.455 4.92 8.03 39.10 3.67
96 97 3.507103 TCATTTTAGCAGTACCGCGTA 57.493 42.857 4.92 0.00 36.85 4.42
97 98 2.373540 TCATTTTAGCAGTACCGCGT 57.626 45.000 4.92 0.00 36.85 6.01
98 99 3.120991 GCTATCATTTTAGCAGTACCGCG 60.121 47.826 0.00 0.00 43.33 6.46
99 100 4.391140 GCTATCATTTTAGCAGTACCGC 57.609 45.455 0.00 0.00 43.33 5.68
107 108 6.214399 ACCGTACTACTGCTATCATTTTAGC 58.786 40.000 0.00 0.00 43.98 3.09
108 109 8.644318 AAACCGTACTACTGCTATCATTTTAG 57.356 34.615 0.00 0.00 0.00 1.85
110 111 9.609346 AATAAACCGTACTACTGCTATCATTTT 57.391 29.630 0.00 0.00 0.00 1.82
111 112 9.609346 AAATAAACCGTACTACTGCTATCATTT 57.391 29.630 0.00 0.00 0.00 2.32
113 114 9.688592 GTAAATAAACCGTACTACTGCTATCAT 57.311 33.333 0.00 0.00 0.00 2.45
114 115 8.685427 TGTAAATAAACCGTACTACTGCTATCA 58.315 33.333 0.00 0.00 0.00 2.15
115 116 8.962111 GTGTAAATAAACCGTACTACTGCTATC 58.038 37.037 0.00 0.00 0.00 2.08
116 117 7.645340 CGTGTAAATAAACCGTACTACTGCTAT 59.355 37.037 0.00 0.00 0.00 2.97
117 118 6.966632 CGTGTAAATAAACCGTACTACTGCTA 59.033 38.462 0.00 0.00 0.00 3.49
118 119 5.801947 CGTGTAAATAAACCGTACTACTGCT 59.198 40.000 0.00 0.00 0.00 4.24
119 120 5.499176 GCGTGTAAATAAACCGTACTACTGC 60.499 44.000 0.00 0.00 0.00 4.40
120 121 5.275418 CGCGTGTAAATAAACCGTACTACTG 60.275 44.000 0.00 0.00 0.00 2.74
121 122 4.793216 CGCGTGTAAATAAACCGTACTACT 59.207 41.667 0.00 0.00 0.00 2.57
122 123 4.546268 GCGCGTGTAAATAAACCGTACTAC 60.546 45.833 8.43 0.00 0.00 2.73
123 124 3.545873 GCGCGTGTAAATAAACCGTACTA 59.454 43.478 8.43 0.00 0.00 1.82
124 125 2.345341 GCGCGTGTAAATAAACCGTACT 59.655 45.455 8.43 0.00 0.00 2.73
125 126 2.345341 AGCGCGTGTAAATAAACCGTAC 59.655 45.455 8.43 0.00 0.00 3.67
126 127 2.605030 AGCGCGTGTAAATAAACCGTA 58.395 42.857 8.43 0.00 0.00 4.02
127 128 1.431496 AGCGCGTGTAAATAAACCGT 58.569 45.000 8.43 0.00 0.00 4.83
128 129 2.599973 AGTAGCGCGTGTAAATAAACCG 59.400 45.455 8.43 0.00 0.00 4.44
129 130 4.800471 AGTAGTAGCGCGTGTAAATAAACC 59.200 41.667 8.43 0.00 0.00 3.27
130 131 5.938883 AGTAGTAGCGCGTGTAAATAAAC 57.061 39.130 8.43 0.00 0.00 2.01
131 132 7.250569 ACTTAGTAGTAGCGCGTGTAAATAAA 58.749 34.615 8.43 0.00 31.21 1.40
132 133 6.785191 ACTTAGTAGTAGCGCGTGTAAATAA 58.215 36.000 8.43 0.00 31.21 1.40
133 134 6.363577 ACTTAGTAGTAGCGCGTGTAAATA 57.636 37.500 8.43 0.00 31.21 1.40
134 135 5.240713 ACTTAGTAGTAGCGCGTGTAAAT 57.759 39.130 8.43 0.00 31.21 1.40
135 136 4.685169 ACTTAGTAGTAGCGCGTGTAAA 57.315 40.909 8.43 0.00 31.21 2.01
136 137 5.395325 CTACTTAGTAGTAGCGCGTGTAA 57.605 43.478 8.43 0.00 45.33 2.41
138 139 3.940657 CTACTTAGTAGTAGCGCGTGT 57.059 47.619 8.43 0.00 45.33 4.49
146 147 4.445453 TGCGCTACTGCTACTTAGTAGTA 58.555 43.478 19.12 14.50 45.44 1.82
148 149 3.965292 TGCGCTACTGCTACTTAGTAG 57.035 47.619 14.56 14.56 46.57 2.57
149 150 3.881089 TCATGCGCTACTGCTACTTAGTA 59.119 43.478 9.73 0.00 36.97 1.82
150 151 2.688446 TCATGCGCTACTGCTACTTAGT 59.312 45.455 9.73 0.00 36.97 2.24
151 152 3.355626 TCATGCGCTACTGCTACTTAG 57.644 47.619 9.73 0.00 36.97 2.18
152 153 4.322080 AATCATGCGCTACTGCTACTTA 57.678 40.909 9.73 0.00 36.97 2.24
153 154 2.898729 ATCATGCGCTACTGCTACTT 57.101 45.000 9.73 0.00 36.97 2.24
154 155 2.898729 AATCATGCGCTACTGCTACT 57.101 45.000 9.73 0.00 36.97 2.57
155 156 3.951979 AAAATCATGCGCTACTGCTAC 57.048 42.857 9.73 0.00 36.97 3.58
156 157 5.757808 TGAATAAAATCATGCGCTACTGCTA 59.242 36.000 9.73 0.00 36.97 3.49
157 158 4.576053 TGAATAAAATCATGCGCTACTGCT 59.424 37.500 9.73 0.00 36.97 4.24
158 159 4.847633 TGAATAAAATCATGCGCTACTGC 58.152 39.130 9.73 0.00 0.00 4.40
159 160 4.908156 GCTGAATAAAATCATGCGCTACTG 59.092 41.667 9.73 3.71 0.00 2.74
160 161 4.319046 CGCTGAATAAAATCATGCGCTACT 60.319 41.667 9.73 0.00 38.81 2.57
161 162 3.902465 CGCTGAATAAAATCATGCGCTAC 59.098 43.478 9.73 0.00 38.81 3.58
162 163 4.132529 CGCTGAATAAAATCATGCGCTA 57.867 40.909 9.73 0.00 38.81 4.26
163 164 2.990941 CGCTGAATAAAATCATGCGCT 58.009 42.857 9.73 0.00 38.81 5.92
165 166 2.990941 AGCGCTGAATAAAATCATGCG 58.009 42.857 10.39 13.09 43.41 4.73
166 167 5.100751 AGTAGCGCTGAATAAAATCATGC 57.899 39.130 22.90 0.00 33.31 4.06
183 184 7.169982 CCTTATACACAACATCTTAGCAGTAGC 59.830 40.741 0.00 0.00 42.56 3.58
184 185 8.198109 ACCTTATACACAACATCTTAGCAGTAG 58.802 37.037 0.00 0.00 0.00 2.57
185 186 8.074613 ACCTTATACACAACATCTTAGCAGTA 57.925 34.615 0.00 0.00 0.00 2.74
186 187 6.947464 ACCTTATACACAACATCTTAGCAGT 58.053 36.000 0.00 0.00 0.00 4.40
187 188 7.849804 AACCTTATACACAACATCTTAGCAG 57.150 36.000 0.00 0.00 0.00 4.24
188 189 8.630054 AAAACCTTATACACAACATCTTAGCA 57.370 30.769 0.00 0.00 0.00 3.49
189 190 9.556030 GAAAAACCTTATACACAACATCTTAGC 57.444 33.333 0.00 0.00 0.00 3.09
208 209 9.770097 AACTACTTTACACTACTAGGAAAAACC 57.230 33.333 0.00 0.00 39.35 3.27
242 243 8.758829 TGCTAGAGGTAAAGAAACATAAGATCA 58.241 33.333 0.00 0.00 0.00 2.92
251 252 3.685272 GCAGGTGCTAGAGGTAAAGAAAC 59.315 47.826 0.00 0.00 38.21 2.78
252 253 3.326588 TGCAGGTGCTAGAGGTAAAGAAA 59.673 43.478 3.18 0.00 42.66 2.52
285 287 2.261671 GTCGTCCTGCCACGTGAT 59.738 61.111 19.30 0.00 40.79 3.06
309 312 6.034591 CCGTTTACTGGTGTACTAGAATGAG 58.965 44.000 0.00 0.00 0.00 2.90
322 325 2.557317 CAAGTCACACCGTTTACTGGT 58.443 47.619 0.00 0.00 41.47 4.00
323 326 1.263217 GCAAGTCACACCGTTTACTGG 59.737 52.381 0.00 0.00 0.00 4.00
324 327 1.263217 GGCAAGTCACACCGTTTACTG 59.737 52.381 0.00 0.00 0.00 2.74
325 328 1.589803 GGCAAGTCACACCGTTTACT 58.410 50.000 0.00 0.00 0.00 2.24
369 374 4.467084 GCCGATGCCCTCGTGGAA 62.467 66.667 4.76 0.00 46.18 3.53
384 393 1.476488 ACAATTTACTTCATGCGGGCC 59.524 47.619 0.00 0.00 0.00 5.80
427 437 2.118679 ACATATGTCTGGTAGCAGCCA 58.881 47.619 17.20 12.88 36.97 4.75
428 438 2.874701 CAACATATGTCTGGTAGCAGCC 59.125 50.000 17.20 6.53 0.00 4.85
429 439 2.289002 GCAACATATGTCTGGTAGCAGC 59.711 50.000 17.20 12.38 0.00 5.25
430 440 3.558829 CAGCAACATATGTCTGGTAGCAG 59.441 47.826 15.93 15.93 32.75 4.24
431 441 3.197549 TCAGCAACATATGTCTGGTAGCA 59.802 43.478 19.20 0.00 35.32 3.49
432 442 3.797039 TCAGCAACATATGTCTGGTAGC 58.203 45.455 19.20 12.38 35.32 3.58
433 443 4.100035 TCCTCAGCAACATATGTCTGGTAG 59.900 45.833 19.20 12.53 35.32 3.18
453 463 3.063084 GTCACGCCGAGTCCTCCT 61.063 66.667 0.00 0.00 0.00 3.69
507 517 8.932791 GTCATCTATTTTGAAACGGAAGAAGTA 58.067 33.333 0.00 0.00 0.00 2.24
508 518 7.094762 GGTCATCTATTTTGAAACGGAAGAAGT 60.095 37.037 0.00 0.00 0.00 3.01
509 519 7.244192 GGTCATCTATTTTGAAACGGAAGAAG 58.756 38.462 0.00 0.00 0.00 2.85
510 520 6.150474 GGGTCATCTATTTTGAAACGGAAGAA 59.850 38.462 0.00 0.00 0.00 2.52
511 521 5.646360 GGGTCATCTATTTTGAAACGGAAGA 59.354 40.000 0.00 0.00 0.00 2.87
512 522 5.414454 TGGGTCATCTATTTTGAAACGGAAG 59.586 40.000 0.00 0.00 0.00 3.46
513 523 5.317808 TGGGTCATCTATTTTGAAACGGAA 58.682 37.500 0.00 0.00 0.00 4.30
514 524 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
515 525 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
516 526 6.149474 AGAGTTGGGTCATCTATTTTGAAACG 59.851 38.462 0.00 0.00 0.00 3.60
517 527 7.454260 AGAGTTGGGTCATCTATTTTGAAAC 57.546 36.000 0.00 0.00 0.00 2.78
518 528 9.177608 CATAGAGTTGGGTCATCTATTTTGAAA 57.822 33.333 0.00 0.00 34.74 2.69
519 529 7.283127 GCATAGAGTTGGGTCATCTATTTTGAA 59.717 37.037 0.00 0.00 34.74 2.69
520 530 6.767902 GCATAGAGTTGGGTCATCTATTTTGA 59.232 38.462 0.00 0.00 34.74 2.69
521 531 6.769822 AGCATAGAGTTGGGTCATCTATTTTG 59.230 38.462 0.00 0.00 34.74 2.44
522 532 6.904626 AGCATAGAGTTGGGTCATCTATTTT 58.095 36.000 0.00 0.00 34.74 1.82
523 533 6.506538 AGCATAGAGTTGGGTCATCTATTT 57.493 37.500 0.00 0.00 34.74 1.40
524 534 7.618019 TTAGCATAGAGTTGGGTCATCTATT 57.382 36.000 0.00 0.00 34.74 1.73
525 535 7.291182 ACTTTAGCATAGAGTTGGGTCATCTAT 59.709 37.037 0.00 0.00 31.05 1.98
526 536 6.611642 ACTTTAGCATAGAGTTGGGTCATCTA 59.388 38.462 0.00 0.00 31.05 1.98
527 537 5.426833 ACTTTAGCATAGAGTTGGGTCATCT 59.573 40.000 0.00 0.00 31.05 2.90
528 538 5.675538 ACTTTAGCATAGAGTTGGGTCATC 58.324 41.667 0.00 0.00 31.05 2.92
529 539 5.700402 ACTTTAGCATAGAGTTGGGTCAT 57.300 39.130 0.00 0.00 31.05 3.06
530 540 5.499004 AACTTTAGCATAGAGTTGGGTCA 57.501 39.130 0.00 0.00 43.44 4.02
531 541 6.641474 ACTAACTTTAGCATAGAGTTGGGTC 58.359 40.000 7.96 0.00 44.80 4.46
532 542 6.622427 ACTAACTTTAGCATAGAGTTGGGT 57.378 37.500 7.96 3.33 44.80 4.51
533 543 7.553334 TGTACTAACTTTAGCATAGAGTTGGG 58.447 38.462 7.96 2.88 44.80 4.12
534 544 8.997621 TTGTACTAACTTTAGCATAGAGTTGG 57.002 34.615 0.00 3.40 44.56 3.77
541 551 9.991906 ACTCAACTTTGTACTAACTTTAGCATA 57.008 29.630 0.00 0.00 34.09 3.14
542 552 8.904099 ACTCAACTTTGTACTAACTTTAGCAT 57.096 30.769 0.00 0.00 34.09 3.79
543 553 7.982919 TGACTCAACTTTGTACTAACTTTAGCA 59.017 33.333 0.00 0.00 34.09 3.49
544 554 8.361592 TGACTCAACTTTGTACTAACTTTAGC 57.638 34.615 0.00 0.00 34.09 3.09
553 563 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
554 564 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
555 565 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
556 566 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
557 567 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
558 568 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
559 569 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
560 570 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
561 571 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
562 572 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
563 573 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
564 574 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
565 575 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
566 576 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
567 577 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
568 578 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
569 579 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
570 580 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
571 581 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
572 582 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
573 583 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
574 584 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
575 585 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
576 586 2.241281 TCATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
577 587 2.235402 GTTTCATACTCCCTCCGTTCCA 59.765 50.000 0.00 0.00 0.00 3.53
578 588 2.235402 TGTTTCATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
579 589 3.604875 TGTTTCATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
580 590 4.360951 TTTGTTTCATACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
581 591 4.261801 CATTTGTTTCATACTCCCTCCGT 58.738 43.478 0.00 0.00 0.00 4.69
582 592 3.627577 CCATTTGTTTCATACTCCCTCCG 59.372 47.826 0.00 0.00 0.00 4.63
583 593 3.381590 GCCATTTGTTTCATACTCCCTCC 59.618 47.826 0.00 0.00 0.00 4.30
584 594 4.016444 TGCCATTTGTTTCATACTCCCTC 58.984 43.478 0.00 0.00 0.00 4.30
585 595 4.046286 TGCCATTTGTTTCATACTCCCT 57.954 40.909 0.00 0.00 0.00 4.20
586 596 4.799564 TTGCCATTTGTTTCATACTCCC 57.200 40.909 0.00 0.00 0.00 4.30
587 597 6.212888 AGATTGCCATTTGTTTCATACTCC 57.787 37.500 0.00 0.00 0.00 3.85
588 598 8.538409 AAAAGATTGCCATTTGTTTCATACTC 57.462 30.769 0.00 0.00 0.00 2.59
589 599 8.776470 CAAAAAGATTGCCATTTGTTTCATACT 58.224 29.630 0.00 0.00 0.00 2.12
590 600 8.016801 CCAAAAAGATTGCCATTTGTTTCATAC 58.983 33.333 0.00 0.00 32.29 2.39
623 633 6.208988 ACACATTCTAGAAATACTGCTCGA 57.791 37.500 9.71 0.00 0.00 4.04
624 634 6.700020 CAACACATTCTAGAAATACTGCTCG 58.300 40.000 9.71 0.00 0.00 5.03
674 684 1.965754 ATCCTCTCCGTTCCTGCAGC 61.966 60.000 8.66 0.00 0.00 5.25
685 695 1.522580 GCAAGCGTCCATCCTCTCC 60.523 63.158 0.00 0.00 0.00 3.71
690 700 3.883997 TTTTTGCAAGCGTCCATCC 57.116 47.368 0.00 0.00 0.00 3.51
707 717 3.610821 GCGGCCGACTTTTCTACAATTTT 60.611 43.478 33.48 0.00 0.00 1.82
711 721 0.034337 AGCGGCCGACTTTTCTACAA 59.966 50.000 33.48 0.00 0.00 2.41
714 731 1.533731 CAAAAGCGGCCGACTTTTCTA 59.466 47.619 35.88 0.00 43.62 2.10
737 754 0.456653 GCAAAGGCAAGGCACATACG 60.457 55.000 0.00 0.00 40.72 3.06
788 805 1.352156 GAGCTAAGCACGGGTTGACG 61.352 60.000 0.00 0.00 40.31 4.35
789 806 0.320421 TGAGCTAAGCACGGGTTGAC 60.320 55.000 0.00 0.00 0.00 3.18
790 807 0.394938 TTGAGCTAAGCACGGGTTGA 59.605 50.000 0.00 0.00 0.00 3.18
791 808 1.234821 TTTGAGCTAAGCACGGGTTG 58.765 50.000 0.00 0.00 0.00 3.77
793 810 1.523758 CTTTTGAGCTAAGCACGGGT 58.476 50.000 0.00 0.00 0.00 5.28
794 811 0.169009 GCTTTTGAGCTAAGCACGGG 59.831 55.000 13.64 0.00 45.64 5.28
799 816 3.366781 CCTCCTTTGCTTTTGAGCTAAGC 60.367 47.826 11.97 11.97 46.33 3.09
800 817 4.074970 TCCTCCTTTGCTTTTGAGCTAAG 58.925 43.478 13.23 13.23 43.61 2.18
801 818 4.098914 TCCTCCTTTGCTTTTGAGCTAA 57.901 40.909 0.00 0.00 35.49 3.09
802 819 3.788227 TCCTCCTTTGCTTTTGAGCTA 57.212 42.857 0.00 0.00 35.49 3.32
804 821 3.733443 TTTCCTCCTTTGCTTTTGAGC 57.267 42.857 0.00 0.00 0.00 4.26
805 822 5.906073 TCTTTTTCCTCCTTTGCTTTTGAG 58.094 37.500 0.00 0.00 0.00 3.02
808 825 6.299805 ACTTCTTTTTCCTCCTTTGCTTTT 57.700 33.333 0.00 0.00 0.00 2.27
811 828 4.956075 TCAACTTCTTTTTCCTCCTTTGCT 59.044 37.500 0.00 0.00 0.00 3.91
812 829 5.262588 TCAACTTCTTTTTCCTCCTTTGC 57.737 39.130 0.00 0.00 0.00 3.68
813 830 6.201615 GCATTCAACTTCTTTTTCCTCCTTTG 59.798 38.462 0.00 0.00 0.00 2.77
814 831 6.283694 GCATTCAACTTCTTTTTCCTCCTTT 58.716 36.000 0.00 0.00 0.00 3.11
815 832 5.507985 CGCATTCAACTTCTTTTTCCTCCTT 60.508 40.000 0.00 0.00 0.00 3.36
817 834 4.229876 CGCATTCAACTTCTTTTTCCTCC 58.770 43.478 0.00 0.00 0.00 4.30
820 837 3.182372 GCACGCATTCAACTTCTTTTTCC 59.818 43.478 0.00 0.00 0.00 3.13
821 838 3.121696 CGCACGCATTCAACTTCTTTTTC 60.122 43.478 0.00 0.00 0.00 2.29
822 839 2.788786 CGCACGCATTCAACTTCTTTTT 59.211 40.909 0.00 0.00 0.00 1.94
823 840 2.223479 ACGCACGCATTCAACTTCTTTT 60.223 40.909 0.00 0.00 0.00 2.27
824 841 1.333619 ACGCACGCATTCAACTTCTTT 59.666 42.857 0.00 0.00 0.00 2.52
826 843 0.235665 CACGCACGCATTCAACTTCT 59.764 50.000 0.00 0.00 0.00 2.85
827 844 0.725784 CCACGCACGCATTCAACTTC 60.726 55.000 0.00 0.00 0.00 3.01
830 872 2.123988 TTCCCACGCACGCATTCAAC 62.124 55.000 0.00 0.00 0.00 3.18
842 884 5.455392 GCATCTTATTGATTGATTCCCACG 58.545 41.667 0.00 0.00 32.05 4.94
843 885 5.537674 AGGCATCTTATTGATTGATTCCCAC 59.462 40.000 0.00 0.00 32.05 4.61
844 886 5.708544 AGGCATCTTATTGATTGATTCCCA 58.291 37.500 0.00 0.00 32.05 4.37
845 887 7.951347 ATAGGCATCTTATTGATTGATTCCC 57.049 36.000 0.00 0.00 32.05 3.97
846 888 9.852091 GAAATAGGCATCTTATTGATTGATTCC 57.148 33.333 0.00 0.00 32.05 3.01
850 892 9.071276 GGAAGAAATAGGCATCTTATTGATTGA 57.929 33.333 0.00 0.00 36.08 2.57
851 893 8.853126 TGGAAGAAATAGGCATCTTATTGATTG 58.147 33.333 0.00 0.00 36.08 2.67
852 894 9.597681 ATGGAAGAAATAGGCATCTTATTGATT 57.402 29.630 0.00 0.00 36.08 2.57
853 895 9.021807 CATGGAAGAAATAGGCATCTTATTGAT 57.978 33.333 0.00 0.00 36.08 2.57
854 896 7.040201 GCATGGAAGAAATAGGCATCTTATTGA 60.040 37.037 0.00 0.00 36.08 2.57
855 897 7.039923 AGCATGGAAGAAATAGGCATCTTATTG 60.040 37.037 0.00 0.00 36.08 1.90
890 933 4.156008 CCGATCGTCCACATAGTATCATGA 59.844 45.833 15.09 0.00 0.00 3.07
897 940 1.030457 GTCCCGATCGTCCACATAGT 58.970 55.000 15.09 0.00 0.00 2.12
898 941 0.040336 CGTCCCGATCGTCCACATAG 60.040 60.000 15.09 0.00 0.00 2.23
992 1082 0.400815 TGTGGGGGTAGTGACTGGTT 60.401 55.000 0.00 0.00 0.00 3.67
1039 1129 6.035843 GCTTTTCTTGATCAATTAATGGCGA 58.964 36.000 8.96 0.00 0.00 5.54
1179 1289 3.300239 TGCATGATCCATGACCATGAA 57.700 42.857 19.21 10.63 43.81 2.57
1224 1344 0.739462 TTGCTTCAGTATGGTCGCCG 60.739 55.000 0.00 0.00 36.16 6.46
1225 1345 1.331756 CATTGCTTCAGTATGGTCGCC 59.668 52.381 0.00 0.00 36.16 5.54
1226 1346 2.279741 TCATTGCTTCAGTATGGTCGC 58.720 47.619 0.00 0.00 36.16 5.19
1227 1347 5.176406 CAGTATCATTGCTTCAGTATGGTCG 59.824 44.000 0.00 0.00 36.16 4.79
1228 1348 5.049818 GCAGTATCATTGCTTCAGTATGGTC 60.050 44.000 0.00 0.00 38.51 4.02
1248 1368 2.839098 CCAGAACCACCCTGCAGT 59.161 61.111 13.81 0.00 0.00 4.40
1363 1483 1.915769 GGAGACCACTGTGGCCTCT 60.916 63.158 32.75 25.40 45.10 3.69
1382 1502 3.698820 GTAGCCCCGTCCCGTGTT 61.699 66.667 0.00 0.00 0.00 3.32
1660 1780 1.671742 GGCCTTCCTGAAGTCGTCA 59.328 57.895 0.00 0.00 36.72 4.35
1837 2353 7.550906 ACTCCATCTGTAAAGAAATACAAGAGC 59.449 37.037 0.00 0.00 35.48 4.09
2054 2629 9.862371 ATCTAGAATACGTGCCATTTTAGATAG 57.138 33.333 15.66 2.79 37.72 2.08
2066 2641 7.408132 TGCTTTATCAATCTAGAATACGTGC 57.592 36.000 0.00 0.00 0.00 5.34
2099 2675 1.480137 TCAAAACCTGCCACAACCAAG 59.520 47.619 0.00 0.00 0.00 3.61
2273 2849 2.660206 CGGATTCCCACACGGTGA 59.340 61.111 16.29 0.00 35.23 4.02
2294 2870 2.851263 TGTAGTCGGCAAAAGGTGAT 57.149 45.000 0.00 0.00 0.00 3.06
2297 2873 1.349688 TCCATGTAGTCGGCAAAAGGT 59.650 47.619 0.00 0.00 0.00 3.50
2303 2879 1.218047 GCAGTCCATGTAGTCGGCA 59.782 57.895 0.00 0.00 0.00 5.69
2456 3032 0.607217 TGAACGCCTCTCTGTACGGA 60.607 55.000 3.91 3.91 0.00 4.69
2487 3063 2.104253 CGTACCCACCATTGGCGAC 61.104 63.158 1.54 0.00 42.35 5.19
2589 3165 3.305950 CCAACCTCAAATCGATTTGGCAA 60.306 43.478 37.45 24.04 45.39 4.52
2597 3173 0.953471 CCGCACCAACCTCAAATCGA 60.953 55.000 0.00 0.00 0.00 3.59
2600 3176 1.004745 AGATCCGCACCAACCTCAAAT 59.995 47.619 0.00 0.00 0.00 2.32
2660 3236 3.319972 GGTAGTCGGTATAGCCAATGACA 59.680 47.826 9.40 0.00 36.97 3.58
2732 3310 9.174166 ACATTTAATTATGACCCTCAGTACAAC 57.826 33.333 0.00 0.00 0.00 3.32
2894 3485 5.462398 AGTGACACTCTGTTTGTCGAAATAC 59.538 40.000 1.07 0.00 45.44 1.89
2956 3547 5.565509 TGTCAATGGCTAGGAAACATAACA 58.434 37.500 0.00 0.00 0.00 2.41
3031 3623 1.737793 GCTAACGGAATGGGTCAAGTG 59.262 52.381 0.00 0.00 0.00 3.16
3083 3675 7.544566 GGAACACGTATAAGTCATGAAGAAAGA 59.455 37.037 0.00 0.00 0.00 2.52
3103 3695 8.090831 TGCATAATCTCATAGTCATAGGAACAC 58.909 37.037 0.00 0.00 0.00 3.32
3251 3843 3.334691 GACAATCGGAGTGACAAATCCA 58.665 45.455 12.93 0.00 35.14 3.41
3273 3865 2.210711 GGCCCAGAGATACCCCTCG 61.211 68.421 0.00 0.00 38.19 4.63
3277 3869 1.384643 AGTGGGCCCAGAGATACCC 60.385 63.158 29.55 11.25 43.14 3.69
3487 4079 7.755822 ACATATTCTACGAAGATCTTTATCGGC 59.244 37.037 17.21 0.68 40.71 5.54
3553 4145 1.154073 CGAGAAACGTCTCCGGTCC 60.154 63.158 0.00 0.00 46.66 4.46
3566 4158 5.886474 AGAACTATGTAGACATGACCGAGAA 59.114 40.000 0.00 0.00 37.15 2.87
3599 4191 1.635663 CTTTAAGCGTGCGGACCCTG 61.636 60.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.