Multiple sequence alignment - TraesCS1D01G011900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G011900 | chr1D | 100.000 | 2585 | 0 | 0 | 1 | 2585 | 6368391 | 6365807 | 0.000000e+00 | 4774.0 |
1 | TraesCS1D01G011900 | chr1D | 86.449 | 428 | 42 | 8 | 1002 | 1424 | 6411346 | 6410930 | 3.030000e-124 | 455.0 |
2 | TraesCS1D01G011900 | chr1D | 83.090 | 343 | 37 | 13 | 1096 | 1424 | 6399895 | 6399560 | 2.520000e-75 | 292.0 |
3 | TraesCS1D01G011900 | chr1D | 81.201 | 383 | 30 | 21 | 1735 | 2085 | 6382836 | 6382464 | 1.180000e-68 | 270.0 |
4 | TraesCS1D01G011900 | chr1D | 87.162 | 148 | 9 | 5 | 1422 | 1559 | 6399512 | 6399365 | 2.660000e-35 | 159.0 |
5 | TraesCS1D01G011900 | chr1B | 88.029 | 1654 | 110 | 33 | 792 | 2409 | 8711162 | 8709561 | 0.000000e+00 | 1877.0 |
6 | TraesCS1D01G011900 | chr1B | 88.323 | 471 | 49 | 4 | 223 | 687 | 8712158 | 8711688 | 6.250000e-156 | 560.0 |
7 | TraesCS1D01G011900 | chr1B | 83.747 | 443 | 36 | 10 | 1002 | 1423 | 8715936 | 8715509 | 1.120000e-103 | 387.0 |
8 | TraesCS1D01G011900 | chr1B | 82.812 | 192 | 15 | 11 | 1904 | 2078 | 8712567 | 8712377 | 3.440000e-34 | 156.0 |
9 | TraesCS1D01G011900 | chr1B | 94.231 | 52 | 3 | 0 | 2534 | 2585 | 288367865 | 288367814 | 2.130000e-11 | 80.5 |
10 | TraesCS1D01G011900 | chr1A | 87.027 | 1056 | 80 | 35 | 757 | 1786 | 7685940 | 7684916 | 0.000000e+00 | 1138.0 |
11 | TraesCS1D01G011900 | chr1A | 84.900 | 702 | 62 | 14 | 100 | 775 | 7687896 | 7687213 | 0.000000e+00 | 669.0 |
12 | TraesCS1D01G011900 | chr1A | 88.224 | 518 | 45 | 11 | 1002 | 1512 | 7697703 | 7697195 | 2.850000e-169 | 604.0 |
13 | TraesCS1D01G011900 | chr1A | 82.734 | 139 | 23 | 1 | 2445 | 2583 | 75590496 | 75590359 | 3.490000e-24 | 122.0 |
14 | TraesCS1D01G011900 | chr1A | 89.157 | 83 | 7 | 2 | 1932 | 2012 | 7688402 | 7688320 | 4.550000e-18 | 102.0 |
15 | TraesCS1D01G011900 | chr1A | 80.198 | 101 | 12 | 4 | 1686 | 1786 | 508078185 | 508078277 | 4.620000e-08 | 69.4 |
16 | TraesCS1D01G011900 | chr7B | 87.674 | 576 | 46 | 16 | 792 | 1366 | 452495647 | 452496198 | 0.000000e+00 | 647.0 |
17 | TraesCS1D01G011900 | chr7B | 85.621 | 612 | 60 | 15 | 223 | 806 | 452494787 | 452495398 | 3.650000e-173 | 617.0 |
18 | TraesCS1D01G011900 | chr7B | 86.882 | 526 | 41 | 10 | 1383 | 1883 | 452496569 | 452497091 | 4.830000e-157 | 564.0 |
19 | TraesCS1D01G011900 | chr7B | 92.174 | 230 | 13 | 3 | 1199 | 1423 | 452468281 | 452468510 | 1.150000e-83 | 320.0 |
20 | TraesCS1D01G011900 | chr7B | 80.420 | 143 | 22 | 4 | 2226 | 2364 | 222549873 | 222549733 | 1.270000e-18 | 104.0 |
21 | TraesCS1D01G011900 | chr4D | 88.321 | 137 | 14 | 2 | 2437 | 2573 | 11082690 | 11082556 | 2.060000e-36 | 163.0 |
22 | TraesCS1D01G011900 | chr4D | 87.500 | 144 | 14 | 3 | 2432 | 2573 | 163758252 | 163758393 | 2.060000e-36 | 163.0 |
23 | TraesCS1D01G011900 | chr4D | 89.796 | 49 | 4 | 1 | 1707 | 1755 | 442404365 | 442404412 | 7.720000e-06 | 62.1 |
24 | TraesCS1D01G011900 | chr7D | 89.683 | 126 | 13 | 0 | 98 | 223 | 65602122 | 65602247 | 7.400000e-36 | 161.0 |
25 | TraesCS1D01G011900 | chr7D | 87.273 | 110 | 7 | 5 | 2220 | 2322 | 66409147 | 66409038 | 4.520000e-23 | 119.0 |
26 | TraesCS1D01G011900 | chr7D | 79.739 | 153 | 27 | 4 | 2215 | 2364 | 575748755 | 575748604 | 9.780000e-20 | 108.0 |
27 | TraesCS1D01G011900 | chr2A | 85.606 | 132 | 17 | 2 | 92 | 223 | 696238705 | 696238834 | 1.250000e-28 | 137.0 |
28 | TraesCS1D01G011900 | chr2A | 81.410 | 156 | 22 | 5 | 2215 | 2364 | 86377829 | 86377675 | 1.260000e-23 | 121.0 |
29 | TraesCS1D01G011900 | chr2D | 79.487 | 195 | 32 | 7 | 2215 | 2402 | 85919993 | 85919800 | 5.800000e-27 | 132.0 |
30 | TraesCS1D01G011900 | chr2B | 82.000 | 150 | 19 | 6 | 2222 | 2364 | 177133608 | 177133460 | 1.260000e-23 | 121.0 |
31 | TraesCS1D01G011900 | chr6B | 81.290 | 155 | 22 | 7 | 2215 | 2363 | 245893323 | 245893476 | 4.520000e-23 | 119.0 |
32 | TraesCS1D01G011900 | chr6B | 80.142 | 141 | 21 | 5 | 2448 | 2585 | 45276812 | 45276676 | 5.890000e-17 | 99.0 |
33 | TraesCS1D01G011900 | chr3D | 82.308 | 130 | 22 | 1 | 2442 | 2571 | 231988853 | 231988981 | 7.560000e-21 | 111.0 |
34 | TraesCS1D01G011900 | chr3D | 82.243 | 107 | 16 | 3 | 2441 | 2546 | 419661462 | 419661566 | 3.540000e-14 | 89.8 |
35 | TraesCS1D01G011900 | chr3D | 91.228 | 57 | 5 | 0 | 2441 | 2497 | 58191326 | 58191270 | 7.670000e-11 | 78.7 |
36 | TraesCS1D01G011900 | chr3A | 86.667 | 90 | 9 | 3 | 2226 | 2313 | 336046959 | 336047047 | 2.120000e-16 | 97.1 |
37 | TraesCS1D01G011900 | chr7A | 80.645 | 124 | 12 | 6 | 1664 | 1786 | 30088594 | 30088706 | 4.580000e-13 | 86.1 |
38 | TraesCS1D01G011900 | chr7A | 91.304 | 46 | 4 | 0 | 2528 | 2573 | 451180936 | 451180981 | 2.150000e-06 | 63.9 |
39 | TraesCS1D01G011900 | chr6D | 90.909 | 55 | 5 | 0 | 1706 | 1760 | 291218216 | 291218270 | 9.920000e-10 | 75.0 |
40 | TraesCS1D01G011900 | chr4B | 91.304 | 46 | 4 | 0 | 2528 | 2573 | 399537660 | 399537705 | 2.150000e-06 | 63.9 |
41 | TraesCS1D01G011900 | chr5D | 89.130 | 46 | 5 | 0 | 2528 | 2573 | 232237597 | 232237642 | 9.990000e-05 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G011900 | chr1D | 6365807 | 6368391 | 2584 | True | 4774.000000 | 4774 | 100.000000 | 1 | 2585 | 1 | chr1D.!!$R1 | 2584 |
1 | TraesCS1D01G011900 | chr1D | 6399365 | 6399895 | 530 | True | 225.500000 | 292 | 85.126000 | 1096 | 1559 | 2 | chr1D.!!$R4 | 463 |
2 | TraesCS1D01G011900 | chr1B | 8709561 | 8715936 | 6375 | True | 745.000000 | 1877 | 85.727750 | 223 | 2409 | 4 | chr1B.!!$R2 | 2186 |
3 | TraesCS1D01G011900 | chr1A | 7684916 | 7688402 | 3486 | True | 636.333333 | 1138 | 87.028000 | 100 | 2012 | 3 | chr1A.!!$R3 | 1912 |
4 | TraesCS1D01G011900 | chr1A | 7697195 | 7697703 | 508 | True | 604.000000 | 604 | 88.224000 | 1002 | 1512 | 1 | chr1A.!!$R1 | 510 |
5 | TraesCS1D01G011900 | chr7B | 452494787 | 452497091 | 2304 | False | 609.333333 | 647 | 86.725667 | 223 | 1883 | 3 | chr7B.!!$F2 | 1660 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
37 | 38 | 0.324738 | CCAGTGTCAGGGGCTAGAGA | 60.325 | 60.0 | 0.0 | 0.0 | 0.0 | 3.1 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1789 | 7555 | 0.172803 | GGTTAGCGTCGGTGTCTCAT | 59.827 | 55.0 | 7.3 | 0.0 | 0.0 | 2.9 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.382618 | GATGTTTCTTGAGAAATGCCAGT | 57.617 | 39.130 | 9.20 | 0.00 | 44.69 | 4.00 |
23 | 24 | 4.572985 | TGTTTCTTGAGAAATGCCAGTG | 57.427 | 40.909 | 9.20 | 0.00 | 44.69 | 3.66 |
25 | 26 | 4.036734 | TGTTTCTTGAGAAATGCCAGTGTC | 59.963 | 41.667 | 9.20 | 0.00 | 44.69 | 3.67 |
26 | 27 | 3.490439 | TCTTGAGAAATGCCAGTGTCA | 57.510 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
27 | 28 | 3.405831 | TCTTGAGAAATGCCAGTGTCAG | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
28 | 29 | 2.189594 | TGAGAAATGCCAGTGTCAGG | 57.810 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
34 | 35 | 2.586792 | GCCAGTGTCAGGGGCTAG | 59.413 | 66.667 | 7.32 | 0.00 | 44.32 | 3.42 |
37 | 38 | 0.324738 | CCAGTGTCAGGGGCTAGAGA | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.10 |
39 | 40 | 2.114616 | CAGTGTCAGGGGCTAGAGAAT | 58.885 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
40 | 41 | 2.114616 | AGTGTCAGGGGCTAGAGAATG | 58.885 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
41 | 42 | 0.833287 | TGTCAGGGGCTAGAGAATGC | 59.167 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
43 | 44 | 1.210478 | GTCAGGGGCTAGAGAATGCAA | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.08 |
45 | 46 | 2.511218 | TCAGGGGCTAGAGAATGCAATT | 59.489 | 45.455 | 0.00 | 0.00 | 40.93 | 2.32 |
46 | 47 | 3.053395 | TCAGGGGCTAGAGAATGCAATTT | 60.053 | 43.478 | 0.00 | 0.00 | 36.07 | 1.82 |
47 | 48 | 4.165950 | TCAGGGGCTAGAGAATGCAATTTA | 59.834 | 41.667 | 0.00 | 0.00 | 36.07 | 1.40 |
48 | 49 | 5.075493 | CAGGGGCTAGAGAATGCAATTTAT | 58.925 | 41.667 | 0.00 | 0.00 | 36.07 | 1.40 |
50 | 51 | 5.772169 | AGGGGCTAGAGAATGCAATTTATTC | 59.228 | 40.000 | 0.00 | 4.68 | 36.07 | 1.75 |
51 | 52 | 5.536161 | GGGGCTAGAGAATGCAATTTATTCA | 59.464 | 40.000 | 12.36 | 0.00 | 36.07 | 2.57 |
52 | 53 | 6.294397 | GGGGCTAGAGAATGCAATTTATTCAG | 60.294 | 42.308 | 12.36 | 5.08 | 36.07 | 3.02 |
55 | 56 | 5.526506 | AGAGAATGCAATTTATTCAGGCC | 57.473 | 39.130 | 0.00 | 0.00 | 36.07 | 5.19 |
57 | 58 | 3.701040 | AGAATGCAATTTATTCAGGCCGT | 59.299 | 39.130 | 0.00 | 0.00 | 36.07 | 5.68 |
58 | 59 | 3.715628 | ATGCAATTTATTCAGGCCGTC | 57.284 | 42.857 | 0.00 | 0.00 | 0.00 | 4.79 |
62 | 63 | 4.887071 | TGCAATTTATTCAGGCCGTCTATT | 59.113 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
63 | 64 | 5.008613 | TGCAATTTATTCAGGCCGTCTATTC | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
64 | 65 | 5.239525 | GCAATTTATTCAGGCCGTCTATTCT | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
65 | 66 | 6.566753 | GCAATTTATTCAGGCCGTCTATTCTC | 60.567 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
66 | 67 | 4.602340 | TTATTCAGGCCGTCTATTCTCC | 57.398 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
68 | 69 | 2.160721 | TCAGGCCGTCTATTCTCCTT | 57.839 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
69 | 70 | 2.467880 | TCAGGCCGTCTATTCTCCTTT | 58.532 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
71 | 72 | 2.939103 | CAGGCCGTCTATTCTCCTTTTG | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
72 | 73 | 2.572104 | AGGCCGTCTATTCTCCTTTTGT | 59.428 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
73 | 74 | 3.009143 | AGGCCGTCTATTCTCCTTTTGTT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
74 | 75 | 4.224370 | AGGCCGTCTATTCTCCTTTTGTTA | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
76 | 77 | 5.589050 | GGCCGTCTATTCTCCTTTTGTTATT | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
77 | 78 | 6.095021 | GGCCGTCTATTCTCCTTTTGTTATTT | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
80 | 81 | 9.379791 | CCGTCTATTCTCCTTTTGTTATTTACT | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
135 | 543 | 4.615513 | AGTCTTATAGTCAAGAGGCCACT | 58.384 | 43.478 | 5.01 | 0.00 | 35.25 | 4.00 |
139 | 547 | 7.345914 | AGTCTTATAGTCAAGAGGCCACTAATT | 59.654 | 37.037 | 5.01 | 0.00 | 35.25 | 1.40 |
142 | 550 | 4.479786 | AGTCAAGAGGCCACTAATTCTC | 57.520 | 45.455 | 5.01 | 0.00 | 0.00 | 2.87 |
150 | 558 | 6.352516 | AGAGGCCACTAATTCTCAATACAAG | 58.647 | 40.000 | 5.01 | 0.00 | 0.00 | 3.16 |
151 | 559 | 5.440610 | AGGCCACTAATTCTCAATACAAGG | 58.559 | 41.667 | 5.01 | 0.00 | 0.00 | 3.61 |
182 | 590 | 3.011119 | GACCAACCACACAACAGTTGTA | 58.989 | 45.455 | 18.74 | 0.00 | 43.23 | 2.41 |
187 | 595 | 3.793559 | ACCACACAACAGTTGTACTCTC | 58.206 | 45.455 | 18.74 | 0.00 | 43.23 | 3.20 |
189 | 597 | 2.794910 | CACACAACAGTTGTACTCTCGG | 59.205 | 50.000 | 18.74 | 7.31 | 43.23 | 4.63 |
191 | 599 | 3.633525 | ACACAACAGTTGTACTCTCGGTA | 59.366 | 43.478 | 18.74 | 0.00 | 43.23 | 4.02 |
209 | 617 | 3.858247 | GGTACGGCTATAATTGGCTAGG | 58.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
216 | 624 | 3.868077 | GCTATAATTGGCTAGGCGATCTG | 59.132 | 47.826 | 18.81 | 10.46 | 0.00 | 2.90 |
243 | 3747 | 8.386606 | CAACTCGAAGAATTTTCTGAGGATAAG | 58.613 | 37.037 | 10.61 | 0.18 | 37.65 | 1.73 |
271 | 3777 | 8.791327 | TCTAATGCACATTAACTCTTTGATCA | 57.209 | 30.769 | 4.74 | 0.00 | 33.34 | 2.92 |
285 | 3791 | 7.072030 | ACTCTTTGATCAACGAAGAATTTTCG | 58.928 | 34.615 | 14.77 | 16.15 | 45.14 | 3.46 |
299 | 3858 | 7.064728 | CGAAGAATTTTCGGAGGATAAAACTCT | 59.935 | 37.037 | 12.18 | 0.00 | 33.84 | 3.24 |
345 | 3904 | 1.680860 | CCCGAACCAAAGGACCATACC | 60.681 | 57.143 | 0.00 | 0.00 | 0.00 | 2.73 |
352 | 3911 | 2.041081 | CCAAAGGACCATACCCAGAACA | 59.959 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
374 | 3933 | 1.483004 | TCCAGTCCACTGTTCGACAAA | 59.517 | 47.619 | 5.99 | 0.00 | 42.27 | 2.83 |
378 | 3937 | 2.676342 | AGTCCACTGTTCGACAAACAAC | 59.324 | 45.455 | 7.35 | 0.00 | 46.95 | 3.32 |
390 | 3949 | 3.249799 | CGACAAACAACATAGTGCTTCCA | 59.750 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
393 | 3952 | 4.400884 | ACAAACAACATAGTGCTTCCAACA | 59.599 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
401 | 3960 | 1.072331 | AGTGCTTCCAACAAGTCCGAT | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
522 | 4083 | 7.657352 | TGTTTCCTTAGGGGGCTATTAATAT | 57.343 | 36.000 | 0.00 | 0.00 | 35.33 | 1.28 |
749 | 4470 | 5.948742 | AGGGGAAAAGTGAAACATGAAAA | 57.051 | 34.783 | 0.00 | 0.00 | 41.43 | 2.29 |
876 | 6182 | 6.411376 | AGATAGAGACTATGGACTATGGACG | 58.589 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
897 | 6203 | 4.102054 | ACGTTTTCCCTTCTAGTCAAGGAA | 59.898 | 41.667 | 11.03 | 6.91 | 45.41 | 3.36 |
927 | 6233 | 2.162681 | GCTTTCTTGCTAGGGCTTGAA | 58.837 | 47.619 | 0.00 | 0.00 | 39.59 | 2.69 |
1000 | 6309 | 2.158035 | AGATGGTAGCTCCCCTCATCAT | 60.158 | 50.000 | 3.52 | 0.00 | 37.33 | 2.45 |
1051 | 6360 | 2.289694 | GGGTGAAGCAAGAGAGCAAGTA | 60.290 | 50.000 | 0.00 | 0.00 | 36.85 | 2.24 |
1067 | 6376 | 3.368843 | GCAAGTACAGAAGAGAGATGGCA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 4.92 |
1147 | 6461 | 3.524606 | CCTCGTCGCCACGGGTAT | 61.525 | 66.667 | 2.33 | 0.00 | 45.92 | 2.73 |
1184 | 6498 | 2.755876 | TCCCAGCGATCGAGCAGT | 60.756 | 61.111 | 21.57 | 0.00 | 40.15 | 4.40 |
1191 | 6505 | 2.604914 | CAGCGATCGAGCAGTTGTAAAT | 59.395 | 45.455 | 21.57 | 0.00 | 40.15 | 1.40 |
1308 | 6632 | 1.966762 | CCACAATTTCAAGGGCGCT | 59.033 | 52.632 | 7.64 | 0.00 | 0.00 | 5.92 |
1508 | 7251 | 6.392354 | CATGCATGTTGTTTAGGTGAAGATT | 58.608 | 36.000 | 18.91 | 0.00 | 0.00 | 2.40 |
1545 | 7288 | 3.234386 | GTGTTTGCGGCTTCAATTAGTC | 58.766 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1613 | 7358 | 1.198637 | GGCTTCTCTGTGTTGTGATGC | 59.801 | 52.381 | 0.00 | 0.00 | 33.09 | 3.91 |
1633 | 7396 | 2.349817 | GCGTTGTGTTGGATTCAGTCAG | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1635 | 7398 | 3.312421 | CGTTGTGTTGGATTCAGTCAGTT | 59.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1660 | 7424 | 4.740205 | GCAGTTAGTTGGCTTGTCTTTTTC | 59.260 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1668 | 7432 | 6.934083 | AGTTGGCTTGTCTTTTTCTTCAAAAA | 59.066 | 30.769 | 0.00 | 0.00 | 38.84 | 1.94 |
1704 | 7468 | 7.698506 | TTACGATATAGATTCACCGGATTCT | 57.301 | 36.000 | 9.46 | 6.95 | 37.48 | 2.40 |
1768 | 7534 | 3.260475 | TGGACCATCAAATCGAACGAT | 57.740 | 42.857 | 3.80 | 3.80 | 36.23 | 3.73 |
1788 | 7554 | 1.063166 | GTTGCTGCCGCTAGAATGC | 59.937 | 57.895 | 0.70 | 0.00 | 36.97 | 3.56 |
1789 | 7555 | 1.377072 | TTGCTGCCGCTAGAATGCA | 60.377 | 52.632 | 0.70 | 0.00 | 36.97 | 3.96 |
1790 | 7556 | 0.749091 | TTGCTGCCGCTAGAATGCAT | 60.749 | 50.000 | 0.70 | 0.00 | 36.97 | 3.96 |
1791 | 7557 | 1.281960 | GCTGCCGCTAGAATGCATG | 59.718 | 57.895 | 0.00 | 0.00 | 33.97 | 4.06 |
1793 | 7559 | 0.866427 | CTGCCGCTAGAATGCATGAG | 59.134 | 55.000 | 0.00 | 0.00 | 33.97 | 2.90 |
1794 | 7560 | 0.465287 | TGCCGCTAGAATGCATGAGA | 59.535 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1795 | 7561 | 0.864455 | GCCGCTAGAATGCATGAGAC | 59.136 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1798 | 7564 | 1.863454 | CGCTAGAATGCATGAGACACC | 59.137 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
1799 | 7565 | 1.863454 | GCTAGAATGCATGAGACACCG | 59.137 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
1800 | 7566 | 2.481969 | GCTAGAATGCATGAGACACCGA | 60.482 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1801 | 7567 | 2.015736 | AGAATGCATGAGACACCGAC | 57.984 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1802 | 7568 | 0.647410 | GAATGCATGAGACACCGACG | 59.353 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1803 | 7569 | 1.361668 | AATGCATGAGACACCGACGC | 61.362 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1810 | 7582 | 1.915614 | GAGACACCGACGCTAACCGA | 61.916 | 60.000 | 0.00 | 0.00 | 41.02 | 4.69 |
1849 | 7621 | 6.931840 | GGAAGTCTTCAGTGACAAATCTACTT | 59.068 | 38.462 | 14.49 | 0.00 | 39.27 | 2.24 |
1850 | 7622 | 8.088981 | GGAAGTCTTCAGTGACAAATCTACTTA | 58.911 | 37.037 | 14.49 | 0.00 | 39.27 | 2.24 |
1993 | 7765 | 7.408132 | TCATCTTCACGTTCTTAGTTTTGAG | 57.592 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2008 | 7780 | 8.491045 | TTAGTTTTGAGAATGGAAAGGGAAAT | 57.509 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2020 | 7792 | 4.466015 | GGAAAGGGAAATAAATGCTGGTGA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2022 | 7794 | 3.016736 | AGGGAAATAAATGCTGGTGACG | 58.983 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
2032 | 7804 | 2.363795 | TGGTGACGGGGGCTAGAG | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
2036 | 7808 | 0.105039 | GTGACGGGGGCTAGAGAATG | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2050 | 7822 | 5.470098 | GCTAGAGAATGCAATTTATTCGGGA | 59.530 | 40.000 | 0.00 | 0.00 | 36.07 | 5.14 |
2054 | 7826 | 2.223711 | AATGCAATTTATTCGGGACGGC | 60.224 | 45.455 | 0.00 | 0.00 | 45.11 | 5.68 |
2072 | 7844 | 5.589050 | GGACGGCTATTCTCCTTTTGTTATT | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2093 | 7865 | 2.057137 | ACTATTGCAATGCCCGTGAT | 57.943 | 45.000 | 22.27 | 0.00 | 0.00 | 3.06 |
2222 | 7994 | 6.350445 | CCTGCCCATATTAAGACAATTATGCC | 60.350 | 42.308 | 0.00 | 0.00 | 0.00 | 4.40 |
2331 | 8103 | 6.184789 | TCATATGGGAAGGTTAGACCAAAAC | 58.815 | 40.000 | 2.13 | 0.00 | 41.95 | 2.43 |
2332 | 8104 | 3.955524 | TGGGAAGGTTAGACCAAAACA | 57.044 | 42.857 | 0.00 | 0.00 | 41.95 | 2.83 |
2333 | 8105 | 4.252570 | TGGGAAGGTTAGACCAAAACAA | 57.747 | 40.909 | 0.00 | 0.00 | 41.95 | 2.83 |
2361 | 8133 | 7.039714 | AGGAAAAGATAAGTGAAACATGGAACC | 60.040 | 37.037 | 0.00 | 0.00 | 41.43 | 3.62 |
2434 | 8206 | 9.073475 | AGATAGATAGCACTAGTAGAAAACAGG | 57.927 | 37.037 | 3.59 | 0.00 | 0.00 | 4.00 |
2435 | 8207 | 6.472686 | AGATAGCACTAGTAGAAAACAGGG | 57.527 | 41.667 | 3.59 | 0.00 | 0.00 | 4.45 |
2436 | 8208 | 5.958987 | AGATAGCACTAGTAGAAAACAGGGT | 59.041 | 40.000 | 3.59 | 0.00 | 0.00 | 4.34 |
2437 | 8209 | 7.124052 | AGATAGCACTAGTAGAAAACAGGGTA | 58.876 | 38.462 | 3.59 | 0.00 | 0.00 | 3.69 |
2438 | 8210 | 5.402997 | AGCACTAGTAGAAAACAGGGTAC | 57.597 | 43.478 | 3.59 | 0.00 | 0.00 | 3.34 |
2439 | 8211 | 5.085219 | AGCACTAGTAGAAAACAGGGTACT | 58.915 | 41.667 | 3.59 | 0.00 | 0.00 | 2.73 |
2440 | 8212 | 5.543020 | AGCACTAGTAGAAAACAGGGTACTT | 59.457 | 40.000 | 3.59 | 0.00 | 0.00 | 2.24 |
2441 | 8213 | 5.638234 | GCACTAGTAGAAAACAGGGTACTTG | 59.362 | 44.000 | 3.59 | 0.00 | 0.00 | 3.16 |
2442 | 8214 | 6.740681 | GCACTAGTAGAAAACAGGGTACTTGT | 60.741 | 42.308 | 3.59 | 0.00 | 33.55 | 3.16 |
2443 | 8215 | 6.867293 | CACTAGTAGAAAACAGGGTACTTGTC | 59.133 | 42.308 | 3.59 | 0.00 | 31.76 | 3.18 |
2444 | 8216 | 4.879598 | AGTAGAAAACAGGGTACTTGTCG | 58.120 | 43.478 | 4.44 | 0.00 | 0.00 | 4.35 |
2445 | 8217 | 3.121738 | AGAAAACAGGGTACTTGTCGG | 57.878 | 47.619 | 4.44 | 0.00 | 0.00 | 4.79 |
2446 | 8218 | 2.148768 | GAAAACAGGGTACTTGTCGGG | 58.851 | 52.381 | 4.44 | 0.00 | 0.00 | 5.14 |
2447 | 8219 | 0.399075 | AAACAGGGTACTTGTCGGGG | 59.601 | 55.000 | 4.44 | 0.00 | 0.00 | 5.73 |
2448 | 8220 | 1.486145 | AACAGGGTACTTGTCGGGGG | 61.486 | 60.000 | 4.44 | 0.00 | 0.00 | 5.40 |
2469 | 8241 | 4.791069 | GGACCCCGGGTAGCCTCA | 62.791 | 72.222 | 21.85 | 0.00 | 35.25 | 3.86 |
2470 | 8242 | 2.446036 | GACCCCGGGTAGCCTCAT | 60.446 | 66.667 | 21.85 | 0.00 | 35.25 | 2.90 |
2471 | 8243 | 2.446036 | ACCCCGGGTAGCCTCATC | 60.446 | 66.667 | 21.85 | 0.00 | 32.11 | 2.92 |
2472 | 8244 | 3.242291 | CCCCGGGTAGCCTCATCC | 61.242 | 72.222 | 21.85 | 0.00 | 0.00 | 3.51 |
2473 | 8245 | 3.616721 | CCCGGGTAGCCTCATCCG | 61.617 | 72.222 | 14.18 | 0.00 | 41.90 | 4.18 |
2474 | 8246 | 4.301027 | CCGGGTAGCCTCATCCGC | 62.301 | 72.222 | 9.73 | 0.00 | 41.02 | 5.54 |
2475 | 8247 | 3.536917 | CGGGTAGCCTCATCCGCA | 61.537 | 66.667 | 9.73 | 0.00 | 35.95 | 5.69 |
2476 | 8248 | 2.109181 | GGGTAGCCTCATCCGCAC | 59.891 | 66.667 | 2.95 | 0.00 | 0.00 | 5.34 |
2477 | 8249 | 2.109181 | GGTAGCCTCATCCGCACC | 59.891 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2478 | 8250 | 2.109181 | GTAGCCTCATCCGCACCC | 59.891 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2479 | 8251 | 2.041922 | TAGCCTCATCCGCACCCT | 60.042 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
2480 | 8252 | 1.113517 | GTAGCCTCATCCGCACCCTA | 61.114 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2481 | 8253 | 0.178932 | TAGCCTCATCCGCACCCTAT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2482 | 8254 | 0.178932 | AGCCTCATCCGCACCCTATA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 1.31 |
2483 | 8255 | 0.685097 | GCCTCATCCGCACCCTATAA | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2484 | 8256 | 1.608283 | GCCTCATCCGCACCCTATAAC | 60.608 | 57.143 | 0.00 | 0.00 | 0.00 | 1.89 |
2485 | 8257 | 1.691976 | CCTCATCCGCACCCTATAACA | 59.308 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
2486 | 8258 | 2.303022 | CCTCATCCGCACCCTATAACAT | 59.697 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2487 | 8259 | 3.244561 | CCTCATCCGCACCCTATAACATT | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
2488 | 8260 | 4.389374 | CTCATCCGCACCCTATAACATTT | 58.611 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2489 | 8261 | 4.385825 | TCATCCGCACCCTATAACATTTC | 58.614 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2490 | 8262 | 3.916359 | TCCGCACCCTATAACATTTCA | 57.084 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
2491 | 8263 | 4.223556 | TCCGCACCCTATAACATTTCAA | 57.776 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2492 | 8264 | 4.196193 | TCCGCACCCTATAACATTTCAAG | 58.804 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2493 | 8265 | 4.080807 | TCCGCACCCTATAACATTTCAAGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2494 | 8266 | 4.638421 | CCGCACCCTATAACATTTCAAGAA | 59.362 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2495 | 8267 | 5.124776 | CCGCACCCTATAACATTTCAAGAAA | 59.875 | 40.000 | 0.00 | 0.00 | 34.46 | 2.52 |
2496 | 8268 | 6.183360 | CCGCACCCTATAACATTTCAAGAAAT | 60.183 | 38.462 | 2.31 | 2.31 | 41.33 | 2.17 |
2497 | 8269 | 7.257722 | CGCACCCTATAACATTTCAAGAAATT | 58.742 | 34.615 | 5.34 | 0.00 | 38.84 | 1.82 |
2498 | 8270 | 7.220683 | CGCACCCTATAACATTTCAAGAAATTG | 59.779 | 37.037 | 5.34 | 4.86 | 38.84 | 2.32 |
2499 | 8271 | 7.492344 | GCACCCTATAACATTTCAAGAAATTGG | 59.508 | 37.037 | 5.34 | 0.00 | 38.84 | 3.16 |
2500 | 8272 | 7.981225 | CACCCTATAACATTTCAAGAAATTGGG | 59.019 | 37.037 | 5.34 | 7.84 | 38.84 | 4.12 |
2501 | 8273 | 6.986231 | CCCTATAACATTTCAAGAAATTGGGC | 59.014 | 38.462 | 5.34 | 0.00 | 38.84 | 5.36 |
2502 | 8274 | 6.986231 | CCTATAACATTTCAAGAAATTGGGCC | 59.014 | 38.462 | 5.34 | 0.00 | 38.84 | 5.80 |
2503 | 8275 | 4.980339 | AACATTTCAAGAAATTGGGCCT | 57.020 | 36.364 | 4.53 | 0.00 | 38.84 | 5.19 |
2504 | 8276 | 7.732222 | ATAACATTTCAAGAAATTGGGCCTA | 57.268 | 32.000 | 4.53 | 0.00 | 38.84 | 3.93 |
2505 | 8277 | 5.665916 | ACATTTCAAGAAATTGGGCCTAG | 57.334 | 39.130 | 4.53 | 0.00 | 38.84 | 3.02 |
2506 | 8278 | 5.086621 | ACATTTCAAGAAATTGGGCCTAGT | 58.913 | 37.500 | 4.53 | 0.00 | 38.84 | 2.57 |
2507 | 8279 | 5.047092 | ACATTTCAAGAAATTGGGCCTAGTG | 60.047 | 40.000 | 4.53 | 0.00 | 38.84 | 2.74 |
2508 | 8280 | 2.446435 | TCAAGAAATTGGGCCTAGTGC | 58.554 | 47.619 | 4.53 | 0.00 | 40.16 | 4.40 |
2509 | 8281 | 2.170166 | CAAGAAATTGGGCCTAGTGCA | 58.830 | 47.619 | 4.53 | 0.00 | 43.89 | 4.57 |
2510 | 8282 | 2.134789 | AGAAATTGGGCCTAGTGCAG | 57.865 | 50.000 | 4.53 | 0.00 | 43.89 | 4.41 |
2511 | 8283 | 0.457443 | GAAATTGGGCCTAGTGCAGC | 59.543 | 55.000 | 4.53 | 0.00 | 43.89 | 5.25 |
2516 | 8288 | 4.182433 | GGCCTAGTGCAGCCCCTC | 62.182 | 72.222 | 3.32 | 0.00 | 43.76 | 4.30 |
2517 | 8289 | 3.402681 | GCCTAGTGCAGCCCCTCA | 61.403 | 66.667 | 0.00 | 0.00 | 40.77 | 3.86 |
2518 | 8290 | 2.971598 | GCCTAGTGCAGCCCCTCAA | 61.972 | 63.158 | 0.00 | 0.00 | 40.77 | 3.02 |
2519 | 8291 | 1.685224 | CCTAGTGCAGCCCCTCAAA | 59.315 | 57.895 | 0.00 | 0.00 | 0.00 | 2.69 |
2520 | 8292 | 0.393537 | CCTAGTGCAGCCCCTCAAAG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2521 | 8293 | 1.002134 | TAGTGCAGCCCCTCAAAGC | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
2522 | 8294 | 2.484287 | TAGTGCAGCCCCTCAAAGCC | 62.484 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2523 | 8295 | 3.900862 | TGCAGCCCCTCAAAGCCA | 61.901 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
2524 | 8296 | 2.601367 | GCAGCCCCTCAAAGCCAA | 60.601 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
2525 | 8297 | 2.935740 | GCAGCCCCTCAAAGCCAAC | 61.936 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
2526 | 8298 | 1.531365 | CAGCCCCTCAAAGCCAACA | 60.531 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
2527 | 8299 | 1.228675 | AGCCCCTCAAAGCCAACAG | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
2528 | 8300 | 1.228552 | GCCCCTCAAAGCCAACAGA | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
2529 | 8301 | 1.527433 | GCCCCTCAAAGCCAACAGAC | 61.527 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2530 | 8302 | 0.895559 | CCCCTCAAAGCCAACAGACC | 60.896 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2531 | 8303 | 0.178992 | CCCTCAAAGCCAACAGACCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2532 | 8304 | 1.548582 | CCCTCAAAGCCAACAGACCAT | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
2533 | 8305 | 1.542915 | CCTCAAAGCCAACAGACCATG | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
2534 | 8306 | 0.961019 | TCAAAGCCAACAGACCATGC | 59.039 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2535 | 8307 | 0.387622 | CAAAGCCAACAGACCATGCG | 60.388 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
2536 | 8308 | 1.526575 | AAAGCCAACAGACCATGCGG | 61.527 | 55.000 | 0.00 | 0.00 | 38.77 | 5.69 |
2537 | 8309 | 4.120331 | GCCAACAGACCATGCGGC | 62.120 | 66.667 | 0.00 | 0.00 | 41.93 | 6.53 |
2538 | 8310 | 3.443045 | CCAACAGACCATGCGGCC | 61.443 | 66.667 | 0.00 | 0.00 | 34.57 | 6.13 |
2539 | 8311 | 3.803082 | CAACAGACCATGCGGCCG | 61.803 | 66.667 | 24.05 | 24.05 | 34.57 | 6.13 |
2551 | 8323 | 4.082523 | CGGCCGGCTTCCAGAAGA | 62.083 | 66.667 | 28.56 | 0.00 | 40.79 | 2.87 |
2552 | 8324 | 2.436824 | GGCCGGCTTCCAGAAGAC | 60.437 | 66.667 | 28.56 | 7.41 | 42.98 | 3.01 |
2556 | 8328 | 2.815647 | GGCTTCCAGAAGACGGCG | 60.816 | 66.667 | 11.57 | 4.80 | 40.79 | 6.46 |
2557 | 8329 | 2.048127 | GCTTCCAGAAGACGGCGT | 60.048 | 61.111 | 14.65 | 14.65 | 40.79 | 5.68 |
2558 | 8330 | 2.383527 | GCTTCCAGAAGACGGCGTG | 61.384 | 63.158 | 21.19 | 1.39 | 40.79 | 5.34 |
2559 | 8331 | 2.357034 | TTCCAGAAGACGGCGTGC | 60.357 | 61.111 | 21.19 | 9.52 | 0.00 | 5.34 |
2560 | 8332 | 3.876589 | TTCCAGAAGACGGCGTGCC | 62.877 | 63.158 | 21.19 | 3.26 | 0.00 | 5.01 |
2562 | 8334 | 4.379243 | CAGAAGACGGCGTGCCCT | 62.379 | 66.667 | 21.19 | 5.36 | 0.00 | 5.19 |
2563 | 8335 | 3.626924 | AGAAGACGGCGTGCCCTT | 61.627 | 61.111 | 21.19 | 15.42 | 0.00 | 3.95 |
2564 | 8336 | 2.263540 | GAAGACGGCGTGCCCTTA | 59.736 | 61.111 | 21.19 | 0.00 | 0.00 | 2.69 |
2565 | 8337 | 1.375013 | GAAGACGGCGTGCCCTTAA | 60.375 | 57.895 | 21.19 | 0.00 | 0.00 | 1.85 |
2566 | 8338 | 0.952010 | GAAGACGGCGTGCCCTTAAA | 60.952 | 55.000 | 21.19 | 0.00 | 0.00 | 1.52 |
2567 | 8339 | 0.535553 | AAGACGGCGTGCCCTTAAAA | 60.536 | 50.000 | 21.19 | 0.00 | 0.00 | 1.52 |
2568 | 8340 | 0.953960 | AGACGGCGTGCCCTTAAAAG | 60.954 | 55.000 | 21.19 | 0.00 | 0.00 | 2.27 |
2569 | 8341 | 1.918868 | GACGGCGTGCCCTTAAAAGG | 61.919 | 60.000 | 21.19 | 1.47 | 46.06 | 3.11 |
2575 | 8347 | 3.599584 | GCCCTTAAAAGGCGGACC | 58.400 | 61.111 | 3.03 | 0.00 | 45.10 | 4.46 |
2576 | 8348 | 2.404186 | GCCCTTAAAAGGCGGACCG | 61.404 | 63.158 | 10.29 | 10.29 | 45.10 | 4.79 |
2577 | 8349 | 1.747745 | CCCTTAAAAGGCGGACCGG | 60.748 | 63.158 | 17.22 | 0.00 | 45.10 | 5.28 |
2578 | 8350 | 1.297364 | CCTTAAAAGGCGGACCGGA | 59.703 | 57.895 | 17.22 | 0.00 | 42.76 | 5.14 |
2579 | 8351 | 1.022982 | CCTTAAAAGGCGGACCGGAC | 61.023 | 60.000 | 17.22 | 0.00 | 42.76 | 4.79 |
2580 | 8352 | 1.003476 | TTAAAAGGCGGACCGGACC | 60.003 | 57.895 | 17.22 | 11.81 | 42.76 | 4.46 |
2581 | 8353 | 1.766625 | TTAAAAGGCGGACCGGACCA | 61.767 | 55.000 | 22.85 | 0.00 | 42.76 | 4.02 |
2582 | 8354 | 2.453379 | TAAAAGGCGGACCGGACCAC | 62.453 | 60.000 | 22.85 | 13.19 | 42.76 | 4.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 5.159209 | CACTGGCATTTCTCAAGAAACATC | 58.841 | 41.667 | 7.32 | 1.77 | 45.55 | 3.06 |
3 | 4 | 4.036734 | TGACACTGGCATTTCTCAAGAAAC | 59.963 | 41.667 | 7.32 | 0.00 | 45.55 | 2.78 |
5 | 6 | 3.817084 | CTGACACTGGCATTTCTCAAGAA | 59.183 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
6 | 7 | 3.405831 | CTGACACTGGCATTTCTCAAGA | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
7 | 8 | 2.486982 | CCTGACACTGGCATTTCTCAAG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
8 | 9 | 2.507484 | CCTGACACTGGCATTTCTCAA | 58.493 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
9 | 10 | 1.271543 | CCCTGACACTGGCATTTCTCA | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
14 | 15 | 2.036256 | GCCCCTGACACTGGCATT | 59.964 | 61.111 | 5.75 | 0.00 | 44.70 | 3.56 |
18 | 19 | 0.324738 | TCTCTAGCCCCTGACACTGG | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
19 | 20 | 1.561643 | TTCTCTAGCCCCTGACACTG | 58.438 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
21 | 22 | 1.474143 | GCATTCTCTAGCCCCTGACAC | 60.474 | 57.143 | 0.00 | 0.00 | 0.00 | 3.67 |
22 | 23 | 0.833287 | GCATTCTCTAGCCCCTGACA | 59.167 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
23 | 24 | 0.833287 | TGCATTCTCTAGCCCCTGAC | 59.167 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
25 | 26 | 2.653234 | ATTGCATTCTCTAGCCCCTG | 57.347 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
26 | 27 | 3.677156 | AAATTGCATTCTCTAGCCCCT | 57.323 | 42.857 | 0.00 | 0.00 | 0.00 | 4.79 |
27 | 28 | 5.536161 | TGAATAAATTGCATTCTCTAGCCCC | 59.464 | 40.000 | 12.04 | 0.00 | 34.21 | 5.80 |
28 | 29 | 6.294397 | CCTGAATAAATTGCATTCTCTAGCCC | 60.294 | 42.308 | 12.04 | 0.00 | 34.21 | 5.19 |
31 | 32 | 6.567321 | CGGCCTGAATAAATTGCATTCTCTAG | 60.567 | 42.308 | 0.00 | 0.00 | 34.21 | 2.43 |
33 | 34 | 4.037208 | CGGCCTGAATAAATTGCATTCTCT | 59.963 | 41.667 | 0.00 | 0.00 | 34.21 | 3.10 |
34 | 35 | 4.202050 | ACGGCCTGAATAAATTGCATTCTC | 60.202 | 41.667 | 0.00 | 4.51 | 34.21 | 2.87 |
37 | 38 | 3.701040 | AGACGGCCTGAATAAATTGCATT | 59.299 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
39 | 40 | 2.722094 | AGACGGCCTGAATAAATTGCA | 58.278 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
40 | 41 | 5.239525 | AGAATAGACGGCCTGAATAAATTGC | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
41 | 42 | 6.073003 | GGAGAATAGACGGCCTGAATAAATTG | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 2.32 |
43 | 44 | 5.308237 | AGGAGAATAGACGGCCTGAATAAAT | 59.692 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
45 | 46 | 4.223953 | AGGAGAATAGACGGCCTGAATAA | 58.776 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
46 | 47 | 3.845860 | AGGAGAATAGACGGCCTGAATA | 58.154 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
47 | 48 | 2.683768 | AGGAGAATAGACGGCCTGAAT | 58.316 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
48 | 49 | 2.160721 | AGGAGAATAGACGGCCTGAA | 57.839 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
50 | 51 | 2.939103 | CAAAAGGAGAATAGACGGCCTG | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
51 | 52 | 2.572104 | ACAAAAGGAGAATAGACGGCCT | 59.428 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
52 | 53 | 2.987232 | ACAAAAGGAGAATAGACGGCC | 58.013 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
116 | 524 | 7.731054 | AGAATTAGTGGCCTCTTGACTATAAG | 58.269 | 38.462 | 13.50 | 0.00 | 0.00 | 1.73 |
130 | 538 | 5.066505 | CCACCTTGTATTGAGAATTAGTGGC | 59.933 | 44.000 | 0.00 | 0.00 | 35.13 | 5.01 |
135 | 543 | 5.045213 | TGGCTCCACCTTGTATTGAGAATTA | 60.045 | 40.000 | 0.00 | 0.00 | 40.22 | 1.40 |
139 | 547 | 2.265367 | TGGCTCCACCTTGTATTGAGA | 58.735 | 47.619 | 0.00 | 0.00 | 40.22 | 3.27 |
142 | 550 | 2.749621 | GTCTTGGCTCCACCTTGTATTG | 59.250 | 50.000 | 0.00 | 0.00 | 40.22 | 1.90 |
150 | 558 | 1.603739 | GGTTGGTCTTGGCTCCACC | 60.604 | 63.158 | 0.00 | 0.00 | 39.84 | 4.61 |
151 | 559 | 1.150536 | TGGTTGGTCTTGGCTCCAC | 59.849 | 57.895 | 0.00 | 0.00 | 33.12 | 4.02 |
182 | 590 | 3.255149 | CCAATTATAGCCGTACCGAGAGT | 59.745 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
187 | 595 | 2.450609 | AGCCAATTATAGCCGTACCG | 57.549 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
189 | 597 | 3.259902 | GCCTAGCCAATTATAGCCGTAC | 58.740 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
191 | 599 | 1.337823 | CGCCTAGCCAATTATAGCCGT | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 5.68 |
206 | 614 | 0.815095 | TTCGAGTTGCAGATCGCCTA | 59.185 | 50.000 | 15.51 | 3.73 | 41.33 | 3.93 |
209 | 617 | 1.350193 | TTCTTCGAGTTGCAGATCGC | 58.650 | 50.000 | 15.51 | 3.07 | 38.79 | 4.58 |
216 | 624 | 4.452455 | TCCTCAGAAAATTCTTCGAGTTGC | 59.548 | 41.667 | 8.73 | 0.00 | 34.74 | 4.17 |
243 | 3747 | 8.256611 | TCAAAGAGTTAATGTGCATTAGAGTC | 57.743 | 34.615 | 0.00 | 8.36 | 35.02 | 3.36 |
271 | 3777 | 7.174426 | AGTTTTATCCTCCGAAAATTCTTCGTT | 59.826 | 33.333 | 16.21 | 0.00 | 40.04 | 3.85 |
285 | 3791 | 6.349300 | TGTGCATTAGAGAGTTTTATCCTCC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
299 | 3858 | 9.102757 | GAGATCAAAGAGTTAATGTGCATTAGA | 57.897 | 33.333 | 0.00 | 0.00 | 35.02 | 2.10 |
345 | 3904 | 1.051812 | AGTGGACTGGAGTGTTCTGG | 58.948 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
374 | 3933 | 4.207165 | ACTTGTTGGAAGCACTATGTTGT | 58.793 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
378 | 3937 | 2.416547 | CGGACTTGTTGGAAGCACTATG | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
390 | 3949 | 5.062558 | CGGTTATCGTTTAATCGGACTTGTT | 59.937 | 40.000 | 6.12 | 0.00 | 0.00 | 2.83 |
503 | 4062 | 9.408648 | CACAATTATATTAATAGCCCCCTAAGG | 57.591 | 37.037 | 1.02 | 0.00 | 0.00 | 2.69 |
688 | 4392 | 8.306761 | CCCCTATGATAATCACTTTAATTTGCC | 58.693 | 37.037 | 0.00 | 0.00 | 0.00 | 4.52 |
699 | 4404 | 7.387643 | GTCTAACCTTCCCCTATGATAATCAC | 58.612 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
711 | 4420 | 0.540454 | CCCTTCGTCTAACCTTCCCC | 59.460 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
876 | 6182 | 7.526142 | AAATTCCTTGACTAGAAGGGAAAAC | 57.474 | 36.000 | 14.44 | 0.00 | 42.63 | 2.43 |
927 | 6233 | 1.445582 | CGCGTCCCTTCGTAGCTTT | 60.446 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
935 | 6241 | 1.177256 | TATAGCTCCCGCGTCCCTTC | 61.177 | 60.000 | 4.92 | 0.00 | 42.32 | 3.46 |
972 | 6278 | 3.075582 | AGGGGAGCTACCATCTCGTTATA | 59.924 | 47.826 | 19.26 | 0.00 | 41.20 | 0.98 |
973 | 6279 | 2.158295 | AGGGGAGCTACCATCTCGTTAT | 60.158 | 50.000 | 19.26 | 0.00 | 41.20 | 1.89 |
974 | 6280 | 1.217183 | AGGGGAGCTACCATCTCGTTA | 59.783 | 52.381 | 19.26 | 0.00 | 41.20 | 3.18 |
975 | 6281 | 0.032017 | AGGGGAGCTACCATCTCGTT | 60.032 | 55.000 | 19.26 | 0.00 | 41.20 | 3.85 |
1024 | 6333 | 0.390472 | CTCTTGCTTCACCCGAGTCC | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1025 | 6334 | 0.603569 | TCTCTTGCTTCACCCGAGTC | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1051 | 6360 | 1.767681 | GGGATGCCATCTCTCTTCTGT | 59.232 | 52.381 | 4.41 | 0.00 | 0.00 | 3.41 |
1110 | 6419 | 1.383803 | GGAGCAGGATGAGGAGGGT | 60.384 | 63.158 | 0.00 | 0.00 | 39.69 | 4.34 |
1147 | 6461 | 3.760035 | GAGGAAGCTCGCCGGACA | 61.760 | 66.667 | 5.05 | 0.00 | 0.00 | 4.02 |
1184 | 6498 | 6.967767 | CGCCGGTGATTAATTACAATTTACAA | 59.032 | 34.615 | 10.20 | 0.00 | 0.00 | 2.41 |
1191 | 6505 | 2.634600 | AGCGCCGGTGATTAATTACAA | 58.365 | 42.857 | 21.76 | 0.00 | 0.00 | 2.41 |
1308 | 6632 | 0.463654 | AGTTGGTGTCGCTGAAGCAA | 60.464 | 50.000 | 2.79 | 0.00 | 42.21 | 3.91 |
1613 | 7358 | 2.872245 | ACTGACTGAATCCAACACAACG | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
1633 | 7396 | 3.066760 | AGACAAGCCAACTAACTGCAAAC | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
1635 | 7398 | 2.930950 | AGACAAGCCAACTAACTGCAA | 58.069 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
1675 | 7439 | 8.797350 | TCCGGTGAATCTATATCGTAATAGAA | 57.203 | 34.615 | 0.00 | 0.00 | 40.82 | 2.10 |
1733 | 7499 | 4.649267 | TGGTCCATGGACTTTGATGTAA | 57.351 | 40.909 | 37.26 | 13.95 | 44.04 | 2.41 |
1788 | 7554 | 1.269166 | GTTAGCGTCGGTGTCTCATG | 58.731 | 55.000 | 7.30 | 0.00 | 0.00 | 3.07 |
1789 | 7555 | 0.172803 | GGTTAGCGTCGGTGTCTCAT | 59.827 | 55.000 | 7.30 | 0.00 | 0.00 | 2.90 |
1790 | 7556 | 1.582968 | GGTTAGCGTCGGTGTCTCA | 59.417 | 57.895 | 7.30 | 0.00 | 0.00 | 3.27 |
1791 | 7557 | 1.513586 | CGGTTAGCGTCGGTGTCTC | 60.514 | 63.158 | 7.30 | 0.00 | 0.00 | 3.36 |
1793 | 7559 | 1.799121 | GTCGGTTAGCGTCGGTGTC | 60.799 | 63.158 | 7.30 | 0.00 | 0.00 | 3.67 |
1794 | 7560 | 2.256461 | GTCGGTTAGCGTCGGTGT | 59.744 | 61.111 | 7.30 | 0.00 | 0.00 | 4.16 |
1795 | 7561 | 2.505557 | GGTCGGTTAGCGTCGGTG | 60.506 | 66.667 | 7.30 | 0.00 | 0.00 | 4.94 |
1798 | 7564 | 1.513586 | GTCAGGTCGGTTAGCGTCG | 60.514 | 63.158 | 3.21 | 0.00 | 0.00 | 5.12 |
1799 | 7565 | 1.153881 | GGTCAGGTCGGTTAGCGTC | 60.154 | 63.158 | 3.21 | 0.00 | 0.00 | 5.19 |
1800 | 7566 | 1.183676 | AAGGTCAGGTCGGTTAGCGT | 61.184 | 55.000 | 3.21 | 0.00 | 0.00 | 5.07 |
1801 | 7567 | 0.736325 | CAAGGTCAGGTCGGTTAGCG | 60.736 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1802 | 7568 | 0.320697 | ACAAGGTCAGGTCGGTTAGC | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
1803 | 7569 | 2.365408 | GACAAGGTCAGGTCGGTTAG | 57.635 | 55.000 | 0.00 | 0.00 | 32.09 | 2.34 |
1810 | 7582 | 0.763223 | ACTTCCCGACAAGGTCAGGT | 60.763 | 55.000 | 0.00 | 0.00 | 38.74 | 4.00 |
1849 | 7621 | 3.383505 | TGCTCCGCTTAATAGACAAGCTA | 59.616 | 43.478 | 5.62 | 0.00 | 45.00 | 3.32 |
1850 | 7622 | 2.168521 | TGCTCCGCTTAATAGACAAGCT | 59.831 | 45.455 | 5.62 | 0.00 | 45.00 | 3.74 |
1978 | 7750 | 7.078228 | CCTTTCCATTCTCAAAACTAAGAACG | 58.922 | 38.462 | 0.00 | 0.00 | 34.52 | 3.95 |
1993 | 7765 | 6.051074 | CCAGCATTTATTTCCCTTTCCATTC | 58.949 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2008 | 7780 | 1.301623 | CCCCCGTCACCAGCATTTA | 59.698 | 57.895 | 0.00 | 0.00 | 0.00 | 1.40 |
2020 | 7792 | 1.271840 | TTGCATTCTCTAGCCCCCGT | 61.272 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2022 | 7794 | 2.371658 | AATTGCATTCTCTAGCCCCC | 57.628 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2032 | 7804 | 3.628017 | CCGTCCCGAATAAATTGCATTC | 58.372 | 45.455 | 0.00 | 3.87 | 0.00 | 2.67 |
2036 | 7808 | 1.021968 | AGCCGTCCCGAATAAATTGC | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2050 | 7822 | 7.827729 | AGTAAATAACAAAAGGAGAATAGCCGT | 59.172 | 33.333 | 0.00 | 0.00 | 0.00 | 5.68 |
2072 | 7844 | 2.992593 | TCACGGGCATTGCAATAGTAA | 58.007 | 42.857 | 12.53 | 0.00 | 0.00 | 2.24 |
2312 | 8084 | 3.955524 | TGTTTTGGTCTAACCTTCCCA | 57.044 | 42.857 | 0.00 | 0.00 | 39.58 | 4.37 |
2318 | 8090 | 6.320418 | TCTTTTCCTCTTGTTTTGGTCTAACC | 59.680 | 38.462 | 0.00 | 0.00 | 39.22 | 2.85 |
2325 | 8097 | 7.940850 | TCACTTATCTTTTCCTCTTGTTTTGG | 58.059 | 34.615 | 0.00 | 0.00 | 0.00 | 3.28 |
2326 | 8098 | 9.801873 | TTTCACTTATCTTTTCCTCTTGTTTTG | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
2331 | 8103 | 8.025445 | CCATGTTTCACTTATCTTTTCCTCTTG | 58.975 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2332 | 8104 | 7.944554 | TCCATGTTTCACTTATCTTTTCCTCTT | 59.055 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2333 | 8105 | 7.461749 | TCCATGTTTCACTTATCTTTTCCTCT | 58.538 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
2408 | 8180 | 9.073475 | CCTGTTTTCTACTAGTGCTATCTATCT | 57.927 | 37.037 | 5.39 | 0.00 | 0.00 | 1.98 |
2409 | 8181 | 8.301002 | CCCTGTTTTCTACTAGTGCTATCTATC | 58.699 | 40.741 | 5.39 | 0.00 | 0.00 | 2.08 |
2410 | 8182 | 7.785506 | ACCCTGTTTTCTACTAGTGCTATCTAT | 59.214 | 37.037 | 5.39 | 0.00 | 0.00 | 1.98 |
2411 | 8183 | 7.124052 | ACCCTGTTTTCTACTAGTGCTATCTA | 58.876 | 38.462 | 5.39 | 0.00 | 0.00 | 1.98 |
2412 | 8184 | 5.958987 | ACCCTGTTTTCTACTAGTGCTATCT | 59.041 | 40.000 | 5.39 | 0.00 | 0.00 | 1.98 |
2413 | 8185 | 6.223351 | ACCCTGTTTTCTACTAGTGCTATC | 57.777 | 41.667 | 5.39 | 0.00 | 0.00 | 2.08 |
2414 | 8186 | 6.896307 | AGTACCCTGTTTTCTACTAGTGCTAT | 59.104 | 38.462 | 5.39 | 0.00 | 0.00 | 2.97 |
2415 | 8187 | 6.251471 | AGTACCCTGTTTTCTACTAGTGCTA | 58.749 | 40.000 | 5.39 | 0.00 | 0.00 | 3.49 |
2416 | 8188 | 5.085219 | AGTACCCTGTTTTCTACTAGTGCT | 58.915 | 41.667 | 5.39 | 0.00 | 0.00 | 4.40 |
2417 | 8189 | 5.402997 | AGTACCCTGTTTTCTACTAGTGC | 57.597 | 43.478 | 5.39 | 0.00 | 0.00 | 4.40 |
2418 | 8190 | 6.756221 | ACAAGTACCCTGTTTTCTACTAGTG | 58.244 | 40.000 | 5.39 | 0.00 | 0.00 | 2.74 |
2419 | 8191 | 6.294397 | CGACAAGTACCCTGTTTTCTACTAGT | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
2420 | 8192 | 6.091437 | CGACAAGTACCCTGTTTTCTACTAG | 58.909 | 44.000 | 0.11 | 0.00 | 0.00 | 2.57 |
2421 | 8193 | 5.047802 | CCGACAAGTACCCTGTTTTCTACTA | 60.048 | 44.000 | 0.11 | 0.00 | 0.00 | 1.82 |
2422 | 8194 | 4.262335 | CCGACAAGTACCCTGTTTTCTACT | 60.262 | 45.833 | 0.11 | 0.00 | 0.00 | 2.57 |
2423 | 8195 | 3.992427 | CCGACAAGTACCCTGTTTTCTAC | 59.008 | 47.826 | 0.11 | 0.00 | 0.00 | 2.59 |
2424 | 8196 | 3.007182 | CCCGACAAGTACCCTGTTTTCTA | 59.993 | 47.826 | 0.11 | 0.00 | 0.00 | 2.10 |
2425 | 8197 | 2.224450 | CCCGACAAGTACCCTGTTTTCT | 60.224 | 50.000 | 0.11 | 0.00 | 0.00 | 2.52 |
2426 | 8198 | 2.148768 | CCCGACAAGTACCCTGTTTTC | 58.851 | 52.381 | 0.11 | 0.00 | 0.00 | 2.29 |
2427 | 8199 | 1.202842 | CCCCGACAAGTACCCTGTTTT | 60.203 | 52.381 | 0.11 | 0.00 | 0.00 | 2.43 |
2428 | 8200 | 0.399075 | CCCCGACAAGTACCCTGTTT | 59.601 | 55.000 | 0.11 | 0.00 | 0.00 | 2.83 |
2429 | 8201 | 1.486145 | CCCCCGACAAGTACCCTGTT | 61.486 | 60.000 | 0.11 | 0.00 | 0.00 | 3.16 |
2430 | 8202 | 1.916777 | CCCCCGACAAGTACCCTGT | 60.917 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2431 | 8203 | 2.987125 | CCCCCGACAAGTACCCTG | 59.013 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2452 | 8224 | 4.791069 | TGAGGCTACCCGGGGTCC | 62.791 | 72.222 | 27.92 | 19.05 | 37.09 | 4.46 |
2453 | 8225 | 2.446036 | ATGAGGCTACCCGGGGTC | 60.446 | 66.667 | 27.92 | 9.79 | 37.09 | 4.46 |
2454 | 8226 | 2.446036 | GATGAGGCTACCCGGGGT | 60.446 | 66.667 | 27.92 | 24.58 | 40.16 | 4.95 |
2455 | 8227 | 3.242291 | GGATGAGGCTACCCGGGG | 61.242 | 72.222 | 27.92 | 12.73 | 35.76 | 5.73 |
2456 | 8228 | 3.616721 | CGGATGAGGCTACCCGGG | 61.617 | 72.222 | 22.25 | 22.25 | 38.42 | 5.73 |
2457 | 8229 | 4.301027 | GCGGATGAGGCTACCCGG | 62.301 | 72.222 | 18.90 | 0.00 | 42.02 | 5.73 |
2458 | 8230 | 3.536917 | TGCGGATGAGGCTACCCG | 61.537 | 66.667 | 14.82 | 14.82 | 44.34 | 5.28 |
2459 | 8231 | 2.109181 | GTGCGGATGAGGCTACCC | 59.891 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2460 | 8232 | 2.109181 | GGTGCGGATGAGGCTACC | 59.891 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2461 | 8233 | 1.113517 | TAGGGTGCGGATGAGGCTAC | 61.114 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2462 | 8234 | 0.178932 | ATAGGGTGCGGATGAGGCTA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
2463 | 8235 | 0.178932 | TATAGGGTGCGGATGAGGCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2464 | 8236 | 0.685097 | TTATAGGGTGCGGATGAGGC | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2465 | 8237 | 1.691976 | TGTTATAGGGTGCGGATGAGG | 59.308 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2466 | 8238 | 3.685139 | ATGTTATAGGGTGCGGATGAG | 57.315 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2467 | 8239 | 4.141597 | TGAAATGTTATAGGGTGCGGATGA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2468 | 8240 | 4.133820 | TGAAATGTTATAGGGTGCGGATG | 58.866 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2469 | 8241 | 4.431416 | TGAAATGTTATAGGGTGCGGAT | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
2470 | 8242 | 3.916359 | TGAAATGTTATAGGGTGCGGA | 57.084 | 42.857 | 0.00 | 0.00 | 0.00 | 5.54 |
2471 | 8243 | 4.196193 | TCTTGAAATGTTATAGGGTGCGG | 58.804 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
2472 | 8244 | 5.811399 | TTCTTGAAATGTTATAGGGTGCG | 57.189 | 39.130 | 0.00 | 0.00 | 0.00 | 5.34 |
2473 | 8245 | 7.492344 | CCAATTTCTTGAAATGTTATAGGGTGC | 59.508 | 37.037 | 9.06 | 0.00 | 34.04 | 5.01 |
2474 | 8246 | 7.981225 | CCCAATTTCTTGAAATGTTATAGGGTG | 59.019 | 37.037 | 9.06 | 1.84 | 34.04 | 4.61 |
2475 | 8247 | 7.364673 | GCCCAATTTCTTGAAATGTTATAGGGT | 60.365 | 37.037 | 9.06 | 0.00 | 34.04 | 4.34 |
2476 | 8248 | 6.986231 | GCCCAATTTCTTGAAATGTTATAGGG | 59.014 | 38.462 | 9.06 | 12.79 | 34.04 | 3.53 |
2477 | 8249 | 6.986231 | GGCCCAATTTCTTGAAATGTTATAGG | 59.014 | 38.462 | 9.06 | 5.93 | 34.04 | 2.57 |
2478 | 8250 | 7.785033 | AGGCCCAATTTCTTGAAATGTTATAG | 58.215 | 34.615 | 0.00 | 0.00 | 34.04 | 1.31 |
2479 | 8251 | 7.732222 | AGGCCCAATTTCTTGAAATGTTATA | 57.268 | 32.000 | 0.00 | 0.00 | 34.04 | 0.98 |
2480 | 8252 | 6.625532 | AGGCCCAATTTCTTGAAATGTTAT | 57.374 | 33.333 | 0.00 | 0.00 | 34.04 | 1.89 |
2481 | 8253 | 6.723977 | ACTAGGCCCAATTTCTTGAAATGTTA | 59.276 | 34.615 | 0.00 | 0.00 | 34.04 | 2.41 |
2482 | 8254 | 4.980339 | AGGCCCAATTTCTTGAAATGTT | 57.020 | 36.364 | 0.00 | 0.00 | 34.04 | 2.71 |
2483 | 8255 | 5.047092 | CACTAGGCCCAATTTCTTGAAATGT | 60.047 | 40.000 | 0.00 | 0.00 | 34.04 | 2.71 |
2484 | 8256 | 5.413499 | CACTAGGCCCAATTTCTTGAAATG | 58.587 | 41.667 | 0.00 | 4.62 | 34.04 | 2.32 |
2485 | 8257 | 4.081476 | GCACTAGGCCCAATTTCTTGAAAT | 60.081 | 41.667 | 0.00 | 3.04 | 33.25 | 2.17 |
2486 | 8258 | 3.258123 | GCACTAGGCCCAATTTCTTGAAA | 59.742 | 43.478 | 0.00 | 0.00 | 33.25 | 2.69 |
2487 | 8259 | 2.825532 | GCACTAGGCCCAATTTCTTGAA | 59.174 | 45.455 | 0.00 | 0.00 | 33.25 | 2.69 |
2488 | 8260 | 2.224992 | TGCACTAGGCCCAATTTCTTGA | 60.225 | 45.455 | 0.00 | 0.00 | 43.89 | 3.02 |
2489 | 8261 | 2.165030 | CTGCACTAGGCCCAATTTCTTG | 59.835 | 50.000 | 0.00 | 0.00 | 43.89 | 3.02 |
2490 | 8262 | 2.450476 | CTGCACTAGGCCCAATTTCTT | 58.550 | 47.619 | 0.00 | 0.00 | 43.89 | 2.52 |
2491 | 8263 | 1.957113 | GCTGCACTAGGCCCAATTTCT | 60.957 | 52.381 | 0.00 | 0.00 | 43.89 | 2.52 |
2492 | 8264 | 0.457443 | GCTGCACTAGGCCCAATTTC | 59.543 | 55.000 | 0.00 | 0.00 | 43.89 | 2.17 |
2493 | 8265 | 0.972471 | GGCTGCACTAGGCCCAATTT | 60.972 | 55.000 | 0.00 | 0.00 | 45.75 | 1.82 |
2494 | 8266 | 1.380380 | GGCTGCACTAGGCCCAATT | 60.380 | 57.895 | 0.00 | 0.00 | 45.75 | 2.32 |
2495 | 8267 | 2.276740 | GGCTGCACTAGGCCCAAT | 59.723 | 61.111 | 0.00 | 0.00 | 45.75 | 3.16 |
2501 | 8273 | 0.393537 | CTTTGAGGGGCTGCACTAGG | 60.394 | 60.000 | 0.21 | 0.00 | 0.00 | 3.02 |
2502 | 8274 | 1.028868 | GCTTTGAGGGGCTGCACTAG | 61.029 | 60.000 | 0.21 | 0.00 | 0.00 | 2.57 |
2503 | 8275 | 1.002134 | GCTTTGAGGGGCTGCACTA | 60.002 | 57.895 | 0.21 | 0.00 | 0.00 | 2.74 |
2504 | 8276 | 2.282745 | GCTTTGAGGGGCTGCACT | 60.283 | 61.111 | 0.21 | 0.00 | 0.00 | 4.40 |
2505 | 8277 | 3.376918 | GGCTTTGAGGGGCTGCAC | 61.377 | 66.667 | 0.50 | 0.00 | 0.00 | 4.57 |
2506 | 8278 | 3.449494 | TTGGCTTTGAGGGGCTGCA | 62.449 | 57.895 | 0.50 | 0.00 | 0.00 | 4.41 |
2507 | 8279 | 2.601367 | TTGGCTTTGAGGGGCTGC | 60.601 | 61.111 | 0.00 | 0.00 | 0.00 | 5.25 |
2508 | 8280 | 1.530013 | CTGTTGGCTTTGAGGGGCTG | 61.530 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2509 | 8281 | 1.228675 | CTGTTGGCTTTGAGGGGCT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
2510 | 8282 | 1.228552 | TCTGTTGGCTTTGAGGGGC | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
2511 | 8283 | 0.895559 | GGTCTGTTGGCTTTGAGGGG | 60.896 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2512 | 8284 | 0.178992 | TGGTCTGTTGGCTTTGAGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2513 | 8285 | 1.542915 | CATGGTCTGTTGGCTTTGAGG | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2514 | 8286 | 1.068055 | GCATGGTCTGTTGGCTTTGAG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2515 | 8287 | 0.961019 | GCATGGTCTGTTGGCTTTGA | 59.039 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2516 | 8288 | 0.387622 | CGCATGGTCTGTTGGCTTTG | 60.388 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2517 | 8289 | 1.526575 | CCGCATGGTCTGTTGGCTTT | 61.527 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2518 | 8290 | 1.973281 | CCGCATGGTCTGTTGGCTT | 60.973 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
2519 | 8291 | 2.360350 | CCGCATGGTCTGTTGGCT | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
2520 | 8292 | 4.120331 | GCCGCATGGTCTGTTGGC | 62.120 | 66.667 | 0.00 | 0.00 | 39.98 | 4.52 |
2521 | 8293 | 3.443045 | GGCCGCATGGTCTGTTGG | 61.443 | 66.667 | 0.00 | 0.00 | 36.72 | 3.77 |
2522 | 8294 | 3.803082 | CGGCCGCATGGTCTGTTG | 61.803 | 66.667 | 14.67 | 0.00 | 37.90 | 3.33 |
2534 | 8306 | 4.082523 | TCTTCTGGAAGCCGGCCG | 62.083 | 66.667 | 26.15 | 21.04 | 38.28 | 6.13 |
2535 | 8307 | 2.436824 | GTCTTCTGGAAGCCGGCC | 60.437 | 66.667 | 26.15 | 8.83 | 38.28 | 6.13 |
2536 | 8308 | 2.815647 | CGTCTTCTGGAAGCCGGC | 60.816 | 66.667 | 21.89 | 21.89 | 36.31 | 6.13 |
2538 | 8310 | 2.815647 | GCCGTCTTCTGGAAGCCG | 60.816 | 66.667 | 6.78 | 6.78 | 39.23 | 5.52 |
2539 | 8311 | 2.815647 | CGCCGTCTTCTGGAAGCC | 60.816 | 66.667 | 5.55 | 0.00 | 38.28 | 4.35 |
2540 | 8312 | 2.048127 | ACGCCGTCTTCTGGAAGC | 60.048 | 61.111 | 5.55 | 1.29 | 38.28 | 3.86 |
2541 | 8313 | 2.383527 | GCACGCCGTCTTCTGGAAG | 61.384 | 63.158 | 4.13 | 4.13 | 39.71 | 3.46 |
2542 | 8314 | 2.357034 | GCACGCCGTCTTCTGGAA | 60.357 | 61.111 | 0.00 | 0.00 | 0.00 | 3.53 |
2543 | 8315 | 4.373116 | GGCACGCCGTCTTCTGGA | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2545 | 8317 | 2.501223 | TAAGGGCACGCCGTCTTCTG | 62.501 | 60.000 | 3.35 | 0.00 | 36.85 | 3.02 |
2546 | 8318 | 1.823169 | TTAAGGGCACGCCGTCTTCT | 61.823 | 55.000 | 3.35 | 0.00 | 36.85 | 2.85 |
2547 | 8319 | 0.952010 | TTTAAGGGCACGCCGTCTTC | 60.952 | 55.000 | 3.35 | 0.00 | 36.85 | 2.87 |
2548 | 8320 | 0.535553 | TTTTAAGGGCACGCCGTCTT | 60.536 | 50.000 | 3.35 | 4.40 | 36.85 | 3.01 |
2549 | 8321 | 0.953960 | CTTTTAAGGGCACGCCGTCT | 60.954 | 55.000 | 3.35 | 0.00 | 36.85 | 4.18 |
2550 | 8322 | 1.500396 | CTTTTAAGGGCACGCCGTC | 59.500 | 57.895 | 3.35 | 0.00 | 36.85 | 4.79 |
2551 | 8323 | 1.969589 | CCTTTTAAGGGCACGCCGT | 60.970 | 57.895 | 1.14 | 0.00 | 42.66 | 5.68 |
2552 | 8324 | 2.874751 | CCTTTTAAGGGCACGCCG | 59.125 | 61.111 | 1.14 | 0.00 | 42.66 | 6.46 |
2558 | 8330 | 2.404186 | CGGTCCGCCTTTTAAGGGC | 61.404 | 63.158 | 8.12 | 8.12 | 46.56 | 5.19 |
2559 | 8331 | 1.747745 | CCGGTCCGCCTTTTAAGGG | 60.748 | 63.158 | 5.50 | 0.00 | 46.56 | 3.95 |
2561 | 8333 | 1.022982 | GGTCCGGTCCGCCTTTTAAG | 61.023 | 60.000 | 5.50 | 0.00 | 0.00 | 1.85 |
2562 | 8334 | 1.003476 | GGTCCGGTCCGCCTTTTAA | 60.003 | 57.895 | 5.50 | 0.00 | 0.00 | 1.52 |
2563 | 8335 | 2.215625 | TGGTCCGGTCCGCCTTTTA | 61.216 | 57.895 | 13.27 | 0.00 | 0.00 | 1.52 |
2564 | 8336 | 3.562232 | TGGTCCGGTCCGCCTTTT | 61.562 | 61.111 | 13.27 | 0.00 | 0.00 | 2.27 |
2565 | 8337 | 4.324991 | GTGGTCCGGTCCGCCTTT | 62.325 | 66.667 | 19.22 | 0.00 | 32.43 | 3.11 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.