Multiple sequence alignment - TraesCS1D01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G010800 chr1D 100.000 2695 0 0 1 2695 5517350 5520044 0.000000e+00 4977.0
1 TraesCS1D01G010800 chr1D 100.000 47 0 0 2968 3014 5520317 5520363 1.490000e-13 87.9
2 TraesCS1D01G010800 chr1D 100.000 32 0 0 1244 1275 111089774 111089805 3.240000e-05 60.2
3 TraesCS1D01G010800 chr1A 92.676 2444 125 24 1 2416 7184483 7186900 0.000000e+00 3472.0
4 TraesCS1D01G010800 chr1A 90.494 263 16 3 2442 2695 7187074 7187336 3.720000e-89 339.0
5 TraesCS1D01G010800 chr1A 97.872 47 1 0 2968 3014 7187653 7187699 6.930000e-12 82.4
6 TraesCS1D01G010800 chr1A 100.000 32 0 0 1244 1275 117245062 117245093 3.240000e-05 60.2
7 TraesCS1D01G010800 chr1B 90.192 2294 165 26 1 2264 8254768 8257031 0.000000e+00 2935.0
8 TraesCS1D01G010800 chr1B 96.875 32 1 0 1244 1275 169694307 169694338 2.000000e-03 54.7
9 TraesCS1D01G010800 chr6B 88.506 174 10 2 515 688 257995328 257995491 5.090000e-48 202.0
10 TraesCS1D01G010800 chr6B 86.250 80 7 3 684 762 257995817 257995893 1.930000e-12 84.2
11 TraesCS1D01G010800 chr6D 94.872 78 4 0 660 737 147237701 147237624 4.080000e-24 122.0
12 TraesCS1D01G010800 chr3D 100.000 32 0 0 1244 1275 46580931 46580962 3.240000e-05 60.2
13 TraesCS1D01G010800 chr3B 100.000 32 0 0 1244 1275 72950784 72950815 3.240000e-05 60.2
14 TraesCS1D01G010800 chr3A 100.000 32 0 0 1244 1275 57947260 57947229 3.240000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G010800 chr1D 5517350 5520363 3013 False 2532.45 4977 100.000000 1 3014 2 chr1D.!!$F2 3013
1 TraesCS1D01G010800 chr1A 7184483 7187699 3216 False 1297.80 3472 93.680667 1 3014 3 chr1A.!!$F2 3013
2 TraesCS1D01G010800 chr1B 8254768 8257031 2263 False 2935.00 2935 90.192000 1 2264 1 chr1B.!!$F1 2263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 191 0.247695 GCTTTCGATGGCGCTGTTAC 60.248 55.0 7.64 0.0 37.46 2.50 F
917 935 0.386476 TATAAGTACACTGCCCGGCG 59.614 55.0 4.58 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1239 0.611062 CCTGGTAGACACGGAGACCA 60.611 60.0 0.0 0.0 39.66 4.02 R
2549 2749 0.605589 CCTCAACCACGAACCCTTCC 60.606 60.0 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.950216 CTGGCTCGTCAGTAGATAGCA 59.050 52.381 0.00 0.00 37.36 3.49
32 33 6.266323 TCGTCAGTAGATAGCAAAGATTGAC 58.734 40.000 0.00 0.00 0.00 3.18
56 57 3.068307 AGCAAAACTCGTACAGACACTCT 59.932 43.478 0.00 0.00 0.00 3.24
57 58 3.802685 GCAAAACTCGTACAGACACTCTT 59.197 43.478 0.00 0.00 0.00 2.85
73 74 3.803778 CACTCTTTTTGCCATGAACAACC 59.196 43.478 0.00 0.00 0.00 3.77
138 141 2.231478 TCCTGCTACAGTTCCTTCGAAG 59.769 50.000 18.51 18.51 0.00 3.79
148 151 4.387256 CAGTTCCTTCGAAGTGCTCTAAAG 59.613 45.833 23.03 5.28 41.36 1.85
163 168 3.333804 TCTAAAGCGTGCAACATCATCA 58.666 40.909 0.00 0.00 35.74 3.07
186 191 0.247695 GCTTTCGATGGCGCTGTTAC 60.248 55.000 7.64 0.00 37.46 2.50
203 208 1.917336 TACTTCATTCACCCGGGGCC 61.917 60.000 27.92 0.00 0.00 5.80
231 236 1.262417 GTCTGCCATGTGTATGCGATG 59.738 52.381 0.00 0.00 32.79 3.84
237 242 0.535780 ATGTGTATGCGATGGCCCTG 60.536 55.000 0.00 0.00 38.85 4.45
259 264 2.492773 GCTGGCTGGCACACTGTTT 61.493 57.895 0.00 0.00 0.00 2.83
274 279 3.067461 CACTGTTTTCCCGGAAAATGTCA 59.933 43.478 24.77 17.66 42.31 3.58
298 303 4.686839 GGAACTCGGATTCCTTTTCTTG 57.313 45.455 10.39 0.00 44.24 3.02
301 306 5.009710 GGAACTCGGATTCCTTTTCTTGTTT 59.990 40.000 10.39 0.00 44.24 2.83
309 314 5.852282 TTCCTTTTCTTGTTTTCCCAGAG 57.148 39.130 0.00 0.00 0.00 3.35
327 333 2.494870 AGAGCACTTGAAAATGGGATGC 59.505 45.455 0.00 0.00 0.00 3.91
353 359 3.670625 TGCAGGAATAGTTTGTTAGCGT 58.329 40.909 0.00 0.00 0.00 5.07
360 366 6.148315 AGGAATAGTTTGTTAGCGTTAACACC 59.852 38.462 22.36 17.64 46.53 4.16
405 411 3.064134 TGAGCTGAGAGATAGAAACGACG 59.936 47.826 0.00 0.00 0.00 5.12
416 422 1.001048 AGAAACGACGGACATCGACAA 60.001 47.619 0.00 0.00 45.13 3.18
426 432 3.245284 CGGACATCGACAATGGAACATAC 59.755 47.826 0.00 0.00 42.85 2.39
504 510 3.504134 TGCAACACTACGCCATTAACAAT 59.496 39.130 0.00 0.00 0.00 2.71
505 511 3.851403 GCAACACTACGCCATTAACAATG 59.149 43.478 0.00 0.00 38.63 2.82
593 609 1.372087 GCTGCTGCCTGTCCATACAC 61.372 60.000 3.85 0.00 0.00 2.90
620 636 3.452990 TGAAAGGCCATTGCATCATCATT 59.547 39.130 5.01 0.00 40.13 2.57
737 754 2.182825 CGATGTCGGTAAAAGGAGACG 58.817 52.381 0.00 0.00 36.49 4.18
739 756 3.488721 CGATGTCGGTAAAAGGAGACGAT 60.489 47.826 0.00 0.00 36.49 3.73
743 760 3.367025 GTCGGTAAAAGGAGACGATTGTG 59.633 47.826 0.00 0.00 35.90 3.33
772 789 2.071778 TGAAAATATCTGGGCCAGGC 57.928 50.000 32.23 1.26 31.51 4.85
856 873 2.689983 GTTTATTGATCCCACTGGGCTG 59.310 50.000 9.60 0.00 43.94 4.85
917 935 0.386476 TATAAGTACACTGCCCGGCG 59.614 55.000 4.58 0.00 0.00 6.46
942 960 2.011046 GCAGCCTCACTCATCAAGGAC 61.011 57.143 0.00 0.00 31.44 3.85
952 970 1.277273 TCATCAAGGACCAGCTCAGTG 59.723 52.381 0.00 0.00 0.00 3.66
982 1000 0.751277 CACCCACACACCACACACAT 60.751 55.000 0.00 0.00 0.00 3.21
1031 1061 1.761667 CCCCTCTCCTCCTGCTCTG 60.762 68.421 0.00 0.00 0.00 3.35
1231 1261 0.402887 TCTCCGTGTCTACCAGGACA 59.597 55.000 0.00 0.00 42.96 4.02
1314 1344 3.087253 CACCACCTCCCGGCCATA 61.087 66.667 2.24 0.00 0.00 2.74
1415 1445 3.483869 GCCCTCCTTCCTCGGCAT 61.484 66.667 0.00 0.00 41.25 4.40
1570 1600 1.133809 CCTCTTGTCCAAGTCCCCCA 61.134 60.000 6.90 0.00 39.38 4.96
1651 1681 0.242825 CGCCGTCAACTTCTCCTACA 59.757 55.000 0.00 0.00 0.00 2.74
1752 1782 2.556287 CGCAACGCCCTCAACTTC 59.444 61.111 0.00 0.00 0.00 3.01
1764 1794 0.894184 TCAACTTCGACCTCTCCGCT 60.894 55.000 0.00 0.00 0.00 5.52
1792 1822 2.351244 CCGGAGCAGCTCACCTACA 61.351 63.158 24.09 0.00 31.08 2.74
1817 1847 2.672651 CAGCCACAACGCCATCCA 60.673 61.111 0.00 0.00 0.00 3.41
1830 1860 2.366837 ATCCACGGCTCCATCCCA 60.367 61.111 0.00 0.00 0.00 4.37
2042 2072 4.169059 TCCATCCATCGGTTCAATCAAT 57.831 40.909 0.00 0.00 0.00 2.57
2054 2084 4.632688 GGTTCAATCAATGCCTCCAAAATG 59.367 41.667 0.00 0.00 0.00 2.32
2116 2151 5.502382 GCACGTATGTACCAATGAAGTGATG 60.502 44.000 0.00 0.00 0.00 3.07
2170 2205 4.913335 ACCAGTACGTATATCAGTGGTG 57.087 45.455 12.88 0.00 42.96 4.17
2180 2215 6.984474 ACGTATATCAGTGGTGATTAAACTGG 59.016 38.462 4.78 0.00 40.84 4.00
2183 2218 1.468520 CAGTGGTGATTAAACTGGCCG 59.531 52.381 0.00 0.00 38.10 6.13
2195 2230 6.761099 TTAAACTGGCCGCTGATTAATTAA 57.239 33.333 0.00 0.00 0.00 1.40
2199 2234 2.230660 GGCCGCTGATTAATTAAGCCT 58.769 47.619 10.78 0.00 36.22 4.58
2201 2236 2.226674 GCCGCTGATTAATTAAGCCTCC 59.773 50.000 10.78 0.00 33.24 4.30
2206 2241 4.997395 GCTGATTAATTAAGCCTCCGATGA 59.003 41.667 10.78 0.00 0.00 2.92
2220 2255 3.023832 TCCGATGATGTAGAGCTTCACA 58.976 45.455 4.06 4.06 34.66 3.58
2317 2358 1.160329 GGATGGATCCGTTTCTGCCG 61.160 60.000 8.18 0.00 37.19 5.69
2364 2405 3.837146 AGCGGACATCATGGATATCTCTT 59.163 43.478 2.05 0.00 0.00 2.85
2395 2436 4.096682 GTCACCTCGAGATTAGCAACTACT 59.903 45.833 15.71 0.00 0.00 2.57
2397 2438 5.296283 TCACCTCGAGATTAGCAACTACTAC 59.704 44.000 15.71 0.00 0.00 2.73
2398 2439 4.579753 ACCTCGAGATTAGCAACTACTACC 59.420 45.833 15.71 0.00 0.00 3.18
2399 2440 4.579340 CCTCGAGATTAGCAACTACTACCA 59.421 45.833 15.71 0.00 0.00 3.25
2415 2456 5.680594 ACTACCATTTTGTCATACCGGTA 57.319 39.130 18.46 18.46 0.00 4.02
2416 2457 6.243216 ACTACCATTTTGTCATACCGGTAT 57.757 37.500 21.72 21.72 0.00 2.73
2417 2458 6.655930 ACTACCATTTTGTCATACCGGTATT 58.344 36.000 24.71 8.72 0.00 1.89
2418 2459 7.794041 ACTACCATTTTGTCATACCGGTATTA 58.206 34.615 24.71 14.59 0.00 0.98
2419 2460 8.266473 ACTACCATTTTGTCATACCGGTATTAA 58.734 33.333 24.71 16.23 0.00 1.40
2420 2461 9.280174 CTACCATTTTGTCATACCGGTATTAAT 57.720 33.333 24.71 14.78 0.00 1.40
2421 2462 8.528044 ACCATTTTGTCATACCGGTATTAATT 57.472 30.769 24.71 0.90 0.00 1.40
2422 2463 8.626526 ACCATTTTGTCATACCGGTATTAATTC 58.373 33.333 24.71 12.86 0.00 2.17
2423 2464 8.846211 CCATTTTGTCATACCGGTATTAATTCT 58.154 33.333 24.71 0.00 0.00 2.40
2467 2667 1.299850 GCTTGGCAACCCGTTTGAC 60.300 57.895 0.00 0.00 44.64 3.18
2496 2696 9.490379 GGAAGATACTTTTGTGAGAGTTAAAGA 57.510 33.333 0.00 0.00 33.12 2.52
2502 2702 8.214721 ACTTTTGTGAGAGTTAAAGAAGAAGG 57.785 34.615 0.00 0.00 33.12 3.46
2508 2708 4.013050 AGAGTTAAAGAAGAAGGGCATGC 58.987 43.478 9.90 9.90 0.00 4.06
2510 2710 2.747446 GTTAAAGAAGAAGGGCATGCGA 59.253 45.455 12.44 0.00 0.00 5.10
2514 2714 3.272364 AAGAAGGGCATGCGAGGCA 62.272 57.895 12.44 0.00 44.86 4.75
2559 2767 3.553922 GCATGAGATAGAGGAAGGGTTCG 60.554 52.174 0.00 0.00 0.00 3.95
2570 2778 0.396811 AAGGGTTCGTGGTTGAGGAG 59.603 55.000 0.00 0.00 0.00 3.69
2571 2779 0.471211 AGGGTTCGTGGTTGAGGAGA 60.471 55.000 0.00 0.00 0.00 3.71
2573 2781 1.509703 GGTTCGTGGTTGAGGAGAAC 58.490 55.000 0.00 0.00 40.09 3.01
2574 2782 1.137513 GTTCGTGGTTGAGGAGAACG 58.862 55.000 0.00 0.00 33.11 3.95
2644 2853 5.221621 ACAACAAATTAACCAAGGGACCATG 60.222 40.000 0.00 0.00 0.00 3.66
2661 2870 2.223249 CCATGGCTTAACGACATTTCCG 60.223 50.000 0.00 0.00 38.57 4.30
2680 2889 2.161609 CCGGAAGTACTTGCCAAATGTC 59.838 50.000 19.99 0.00 0.00 3.06
2681 2890 2.159707 CGGAAGTACTTGCCAAATGTCG 60.160 50.000 19.99 1.25 0.00 4.35
2688 2897 0.953471 TTGCCAAATGTCGTCCCTCG 60.953 55.000 0.00 0.00 41.41 4.63
2999 3252 3.327757 AGACCACATGCCAAGACTTAAGA 59.672 43.478 10.09 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.632145 ACGAGTTTTGCTGGTCAATCTTT 59.368 39.130 0.00 0.00 34.12 2.52
32 33 2.221055 GTGTCTGTACGAGTTTTGCTGG 59.779 50.000 0.00 0.00 0.00 4.85
56 57 2.690497 TCTCGGTTGTTCATGGCAAAAA 59.310 40.909 0.00 0.00 0.00 1.94
57 58 2.293122 CTCTCGGTTGTTCATGGCAAAA 59.707 45.455 0.00 0.00 0.00 2.44
148 151 0.522705 CAGCTGATGATGTTGCACGC 60.523 55.000 8.42 0.00 0.00 5.34
149 152 0.522705 GCAGCTGATGATGTTGCACG 60.523 55.000 20.43 0.00 40.52 5.34
150 153 0.809385 AGCAGCTGATGATGTTGCAC 59.191 50.000 20.43 0.00 42.68 4.57
163 168 3.503363 GCGCCATCGAAAGCAGCT 61.503 61.111 10.25 0.00 38.10 4.24
186 191 2.440247 GGCCCCGGGTGAATGAAG 60.440 66.667 21.85 1.58 0.00 3.02
203 208 0.514255 CACATGGCAGACTGTTGACG 59.486 55.000 3.99 0.00 0.00 4.35
256 261 3.057526 CCTCTGACATTTTCCGGGAAAAC 60.058 47.826 31.33 21.10 42.98 2.43
259 264 1.982226 TCCTCTGACATTTTCCGGGAA 59.018 47.619 5.09 5.09 0.00 3.97
290 295 4.098501 AGTGCTCTGGGAAAACAAGAAAAG 59.901 41.667 0.00 0.00 0.00 2.27
298 303 4.385358 TTTTCAAGTGCTCTGGGAAAAC 57.615 40.909 17.63 0.00 35.19 2.43
301 306 2.892852 CCATTTTCAAGTGCTCTGGGAA 59.107 45.455 0.00 0.00 0.00 3.97
309 314 2.738314 GTTGCATCCCATTTTCAAGTGC 59.262 45.455 0.00 0.00 0.00 4.40
327 333 5.858581 GCTAACAAACTATTCCTGCAAGTTG 59.141 40.000 1.61 0.00 33.85 3.16
353 359 6.621316 ACAATCACACATTTACGGTGTTAA 57.379 33.333 0.00 0.00 46.75 2.01
360 366 7.020602 TCAGCAATTACAATCACACATTTACG 58.979 34.615 0.00 0.00 0.00 3.18
405 411 3.560068 GGTATGTTCCATTGTCGATGTCC 59.440 47.826 0.00 0.00 33.71 4.02
416 422 5.878406 TTTTGTTTGGTGGTATGTTCCAT 57.122 34.783 0.00 0.00 39.81 3.41
504 510 0.813610 CATCTTACGCAATCCGGCCA 60.814 55.000 2.24 0.00 42.52 5.36
505 511 0.531974 TCATCTTACGCAATCCGGCC 60.532 55.000 0.00 0.00 42.52 6.13
513 519 8.710835 TGTTTAGATATGTTTCATCTTACGCA 57.289 30.769 0.00 0.00 34.58 5.24
540 556 1.017177 CGCCCCGATTCGTTGAAGAA 61.017 55.000 5.20 0.00 34.31 2.52
545 561 3.192922 GGTCGCCCCGATTCGTTG 61.193 66.667 5.20 0.00 38.42 4.10
593 609 0.680618 TGCAATGGCCTTTCAGTTGG 59.319 50.000 3.32 0.00 40.13 3.77
620 636 5.947566 ACAACAAAGTGGATGATCATGATGA 59.052 36.000 14.30 4.76 0.00 2.92
639 655 4.098196 CACCATGGATGCATATCAACAACA 59.902 41.667 21.47 0.00 34.90 3.33
731 748 6.504398 TCAAGATACATACACAATCGTCTCC 58.496 40.000 0.00 0.00 0.00 3.71
743 760 7.665559 TGGCCCAGATATTTTCAAGATACATAC 59.334 37.037 0.00 0.00 0.00 2.39
772 789 1.086067 ATGGCAGCGACAATCACTCG 61.086 55.000 0.00 0.00 0.00 4.18
856 873 0.036294 GAGGGGGTGCACTAACACTC 60.036 60.000 17.98 18.15 40.51 3.51
917 935 1.445716 GATGAGTGAGGCTGCATGGC 61.446 60.000 0.50 0.00 42.15 4.40
952 970 0.037232 GTGTGGGTGTCACTAGGCTC 60.037 60.000 2.35 0.00 46.20 4.70
982 1000 5.431765 GGCCATCTTCTTCTATCAAAGTGA 58.568 41.667 0.00 0.00 0.00 3.41
1031 1061 1.002087 TCGAAACAAGGAGGAGGAAGC 59.998 52.381 0.00 0.00 0.00 3.86
1209 1239 0.611062 CCTGGTAGACACGGAGACCA 60.611 60.000 0.00 0.00 39.66 4.02
1492 1522 2.102252 GGTTGATACTGGAGAGGCTGAG 59.898 54.545 0.00 0.00 0.00 3.35
1570 1600 3.771160 CTGGAGGTAGGCGCCGTT 61.771 66.667 23.20 7.21 0.00 4.44
1651 1681 2.893398 GTTGCGGGAGAGGTCGAT 59.107 61.111 0.00 0.00 0.00 3.59
1752 1782 3.062466 TCCACAGCGGAGAGGTCG 61.062 66.667 0.00 0.00 39.64 4.79
1764 1794 2.525629 TGCTCCGGGAACTCCACA 60.526 61.111 0.00 0.00 37.91 4.17
1792 1822 2.426023 GTTGTGGCTGAGGTCGGT 59.574 61.111 0.00 0.00 0.00 4.69
2042 2072 1.551430 CATGGCTTCATTTTGGAGGCA 59.449 47.619 13.69 13.69 41.25 4.75
2054 2084 4.386711 TCACATCTCATCATCATGGCTTC 58.613 43.478 0.00 0.00 0.00 3.86
2170 2205 4.893424 TTAATCAGCGGCCAGTTTAATC 57.107 40.909 2.24 0.00 0.00 1.75
2180 2215 2.226674 GGAGGCTTAATTAATCAGCGGC 59.773 50.000 11.57 0.00 34.09 6.53
2183 2218 4.997395 TCATCGGAGGCTTAATTAATCAGC 59.003 41.667 10.02 10.02 0.00 4.26
2195 2230 0.965439 GCTCTACATCATCGGAGGCT 59.035 55.000 0.00 0.00 0.00 4.58
2199 2234 3.023832 TGTGAAGCTCTACATCATCGGA 58.976 45.455 0.00 0.00 0.00 4.55
2201 2236 4.289342 CTCTGTGAAGCTCTACATCATCG 58.711 47.826 3.76 0.00 0.00 3.84
2220 2255 7.543868 GCAATATCGAGTACATTCATTAGCTCT 59.456 37.037 0.00 0.00 0.00 4.09
2317 2358 0.735471 GAGCTCCTCGGCATTTTTCC 59.265 55.000 0.87 0.00 34.17 3.13
2395 2436 9.629878 AATTAATACCGGTATGACAAAATGGTA 57.370 29.630 27.45 9.30 35.20 3.25
2397 2438 8.846211 AGAATTAATACCGGTATGACAAAATGG 58.154 33.333 27.45 0.00 0.00 3.16
2425 2466 9.815306 AGCATAGATTTCTCTTGTATCTACCTA 57.185 33.333 0.00 0.00 34.65 3.08
2467 2667 4.184629 CTCTCACAAAAGTATCTTCCCCG 58.815 47.826 0.00 0.00 0.00 5.73
2496 2696 2.439156 GCCTCGCATGCCCTTCTT 60.439 61.111 13.15 0.00 0.00 2.52
2508 2708 3.390521 TGTAGCCCCACTGCCTCG 61.391 66.667 0.00 0.00 0.00 4.63
2510 2710 1.925455 ATGTGTAGCCCCACTGCCT 60.925 57.895 5.12 0.00 36.30 4.75
2514 2714 1.583556 TCATCATGTGTAGCCCCACT 58.416 50.000 5.12 0.00 36.30 4.00
2519 2719 2.842457 TGCTCATCATCATGTGTAGCC 58.158 47.619 0.00 0.00 32.21 3.93
2523 2723 4.417426 TCTCATGCTCATCATCATGTGT 57.583 40.909 0.00 0.00 40.54 3.72
2549 2749 0.605589 CCTCAACCACGAACCCTTCC 60.606 60.000 0.00 0.00 0.00 3.46
2559 2767 1.597663 CAACACGTTCTCCTCAACCAC 59.402 52.381 0.00 0.00 0.00 4.16
2570 2778 1.295792 TCCTCAAGCACAACACGTTC 58.704 50.000 0.00 0.00 0.00 3.95
2571 2779 1.603802 CATCCTCAAGCACAACACGTT 59.396 47.619 0.00 0.00 0.00 3.99
2573 2781 1.229428 ACATCCTCAAGCACAACACG 58.771 50.000 0.00 0.00 0.00 4.49
2574 2782 2.287788 CCAACATCCTCAAGCACAACAC 60.288 50.000 0.00 0.00 0.00 3.32
2644 2853 1.729284 TCCGGAAATGTCGTTAAGCC 58.271 50.000 0.00 0.00 0.00 4.35
2661 2870 2.812011 ACGACATTTGGCAAGTACTTCC 59.188 45.455 4.77 10.67 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.