Multiple sequence alignment - TraesCS1D01G010100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G010100 chr1D 100.000 6326 0 0 1 6326 5419596 5425921 0.000000e+00 11683
1 TraesCS1D01G010100 chr1D 93.631 895 34 4 3902 4792 5467129 5466254 0.000000e+00 1315
2 TraesCS1D01G010100 chr1D 88.942 633 49 9 1 632 142663470 142662858 0.000000e+00 761
3 TraesCS1D01G010100 chr1D 91.061 358 31 1 4840 5196 5466256 5465899 3.430000e-132 483
4 TraesCS1D01G010100 chr1D 79.568 509 57 27 1412 1905 5468165 5467689 2.850000e-83 320
5 TraesCS1D01G010100 chr1D 86.644 292 29 6 5241 5532 5465906 5465625 1.320000e-81 315
6 TraesCS1D01G010100 chr1D 95.200 125 5 1 766 889 5468549 5468425 5.000000e-46 196
7 TraesCS1D01G010100 chr1D 94.340 106 4 2 3776 3880 5467446 5467342 1.830000e-35 161
8 TraesCS1D01G010100 chr1A 94.686 4328 145 26 1236 5533 6903580 6899308 0.000000e+00 6639
9 TraesCS1D01G010100 chr1A 88.490 1642 154 26 3897 5532 6885068 6883456 0.000000e+00 1953
10 TraesCS1D01G010100 chr1A 92.857 1050 62 2 4483 5532 6914521 6913485 0.000000e+00 1511
11 TraesCS1D01G010100 chr1A 82.297 1271 158 35 1798 3023 6887166 6885918 0.000000e+00 1038
12 TraesCS1D01G010100 chr1A 76.741 761 148 18 4 760 334414640 334413905 1.280000e-106 398
13 TraesCS1D01G010100 chr1A 84.783 414 41 15 3240 3644 6885818 6885418 4.600000e-106 396
14 TraesCS1D01G010100 chr1A 86.310 336 32 8 787 1109 6915279 6914945 2.810000e-93 353
15 TraesCS1D01G010100 chr1A 86.076 316 29 11 801 1107 6904029 6903720 6.120000e-85 326
16 TraesCS1D01G010100 chr1A 86.861 137 5 2 1180 1311 6914846 6914718 2.380000e-29 141
17 TraesCS1D01G010100 chr1A 93.333 75 5 0 1129 1203 6903659 6903585 1.860000e-20 111
18 TraesCS1D01G010100 chr1B 89.769 1642 135 11 3897 5532 639412380 639413994 0.000000e+00 2071
19 TraesCS1D01G010100 chr1B 92.852 1287 81 6 4507 5787 41987436 41988717 0.000000e+00 1857
20 TraesCS1D01G010100 chr1B 92.737 716 37 8 3172 3880 41974575 41973868 0.000000e+00 1020
21 TraesCS1D01G010100 chr1B 90.698 731 45 10 35 764 57128273 57128981 0.000000e+00 952
22 TraesCS1D01G010100 chr1B 84.900 649 45 21 1809 2445 41975536 41974929 1.950000e-169 606
23 TraesCS1D01G010100 chr1B 90.741 378 9 7 3919 4294 41973645 41973292 1.230000e-131 481
24 TraesCS1D01G010100 chr1B 83.439 314 23 8 5664 5960 639414463 639414764 1.350000e-66 265
25 TraesCS1D01G010100 chr1B 94.512 164 9 0 6018 6181 639414765 639414928 2.930000e-63 254
26 TraesCS1D01G010100 chr1B 83.264 239 23 7 5816 6052 41988718 41988941 2.990000e-48 204
27 TraesCS1D01G010100 chr1B 94.792 96 3 2 6232 6326 669891455 669891549 1.420000e-31 148
28 TraesCS1D01G010100 chr2A 89.150 765 61 6 1 764 550182365 550181622 0.000000e+00 933
29 TraesCS1D01G010100 chr2A 87.320 765 75 10 1 764 348050520 348049777 0.000000e+00 856
30 TraesCS1D01G010100 chr2A 91.346 104 7 2 6225 6326 655044719 655044822 2.380000e-29 141
31 TraesCS1D01G010100 chr5D 89.048 767 46 14 1 764 378151215 378150484 0.000000e+00 917
32 TraesCS1D01G010100 chr5D 94.382 89 5 0 3996 4084 288354299 288354387 3.080000e-28 137
33 TraesCS1D01G010100 chr6A 88.391 758 65 10 1 757 155746775 155747510 0.000000e+00 891
34 TraesCS1D01G010100 chr6A 77.859 411 84 7 356 764 334026603 334027008 1.360000e-61 248
35 TraesCS1D01G010100 chr6A 77.551 294 57 9 2702 2990 614164783 614164494 1.090000e-37 169
36 TraesCS1D01G010100 chr5A 87.582 765 72 6 1 764 92208306 92207564 0.000000e+00 865
37 TraesCS1D01G010100 chr5A 98.824 85 1 0 6242 6326 569806479 569806563 1.100000e-32 152
38 TraesCS1D01G010100 chr5B 87.843 765 56 14 1 764 453530466 453531194 0.000000e+00 863
39 TraesCS1D01G010100 chr5B 93.878 294 17 1 1 294 642595460 642595752 5.820000e-120 442
40 TraesCS1D01G010100 chr5B 77.604 768 134 21 1 764 228533068 228532335 1.260000e-116 431
41 TraesCS1D01G010100 chr5B 76.540 763 150 17 4 763 698020204 698019468 2.140000e-104 390
42 TraesCS1D01G010100 chr5B 95.604 91 4 0 6236 6326 286884313 286884223 5.110000e-31 147
43 TraesCS1D01G010100 chr2D 86.928 765 61 10 1 764 460580049 460579323 0.000000e+00 822
44 TraesCS1D01G010100 chr2D 83.357 691 83 16 1 686 313467928 313468591 1.510000e-170 610
45 TraesCS1D01G010100 chr2D 94.624 93 5 0 3993 4085 598951328 598951236 1.840000e-30 145
46 TraesCS1D01G010100 chr3D 80.967 951 174 7 4264 5211 588852851 588851905 0.000000e+00 747
47 TraesCS1D01G010100 chr3D 76.496 702 139 16 55 754 92269952 92269275 6.030000e-95 359
48 TraesCS1D01G010100 chr3D 75.712 737 142 24 1 729 371341866 371342573 1.020000e-87 335
49 TraesCS1D01G010100 chr3D 75.664 715 148 16 49 760 179261802 179262493 3.650000e-87 333
50 TraesCS1D01G010100 chr3D 79.130 230 46 2 392 619 497654702 497654931 2.360000e-34 158
51 TraesCS1D01G010100 chr3D 98.810 84 1 0 6243 6326 208707494 208707577 3.950000e-32 150
52 TraesCS1D01G010100 chr3D 92.632 95 7 0 3996 4090 445019132 445019038 3.080000e-28 137
53 TraesCS1D01G010100 chr6D 79.217 1073 203 16 4275 5334 34948663 34947598 0.000000e+00 728
54 TraesCS1D01G010100 chr6D 79.252 294 52 9 2702 2990 468098491 468098202 5.000000e-46 196
55 TraesCS1D01G010100 chr6D 78.682 258 51 4 331 587 11167808 11167554 1.090000e-37 169
56 TraesCS1D01G010100 chr6D 92.632 95 7 0 3996 4090 422072114 422072020 3.080000e-28 137
57 TraesCS1D01G010100 chr2B 81.915 752 107 18 1 749 338778387 338777662 5.420000e-170 608
58 TraesCS1D01G010100 chr2B 87.984 516 41 8 57 572 310852485 310851991 1.960000e-164 590
59 TraesCS1D01G010100 chr2B 78.470 706 123 19 59 760 361648314 361648994 9.740000e-118 435
60 TraesCS1D01G010100 chr2B 93.878 98 6 0 3993 4090 728343406 728343309 1.420000e-31 148
61 TraesCS1D01G010100 chr2B 94.624 93 5 0 3995 4087 74002831 74002923 1.840000e-30 145
62 TraesCS1D01G010100 chr2B 73.667 300 68 9 2702 2992 118630308 118630605 8.670000e-19 106
63 TraesCS1D01G010100 chr4B 77.260 708 135 17 59 763 428959298 428958614 5.950000e-105 392
64 TraesCS1D01G010100 chr4B 98.810 84 1 0 6243 6326 639952708 639952791 3.950000e-32 150
65 TraesCS1D01G010100 chr4B 90.476 105 6 4 6221 6325 81899363 81899463 1.110000e-27 135
66 TraesCS1D01G010100 chr6B 95.283 212 9 1 1 212 32823859 32823649 1.020000e-87 335
67 TraesCS1D01G010100 chr6B 93.000 100 6 1 6226 6325 27997270 27997368 1.840000e-30 145
68 TraesCS1D01G010100 chr4A 98.810 84 1 0 6243 6326 713379731 713379648 3.950000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G010100 chr1D 5419596 5425921 6325 False 11683.000000 11683 100.000000 1 6326 1 chr1D.!!$F1 6325
1 TraesCS1D01G010100 chr1D 142662858 142663470 612 True 761.000000 761 88.942000 1 632 1 chr1D.!!$R1 631
2 TraesCS1D01G010100 chr1D 5465625 5468549 2924 True 465.000000 1315 90.074000 766 5532 6 chr1D.!!$R2 4766
3 TraesCS1D01G010100 chr1A 6899308 6904029 4721 True 2358.666667 6639 91.365000 801 5533 3 chr1A.!!$R3 4732
4 TraesCS1D01G010100 chr1A 6883456 6887166 3710 True 1129.000000 1953 85.190000 1798 5532 3 chr1A.!!$R2 3734
5 TraesCS1D01G010100 chr1A 6913485 6915279 1794 True 668.333333 1511 88.676000 787 5532 3 chr1A.!!$R4 4745
6 TraesCS1D01G010100 chr1A 334413905 334414640 735 True 398.000000 398 76.741000 4 760 1 chr1A.!!$R1 756
7 TraesCS1D01G010100 chr1B 41987436 41988941 1505 False 1030.500000 1857 88.058000 4507 6052 2 chr1B.!!$F3 1545
8 TraesCS1D01G010100 chr1B 57128273 57128981 708 False 952.000000 952 90.698000 35 764 1 chr1B.!!$F1 729
9 TraesCS1D01G010100 chr1B 639412380 639414928 2548 False 863.333333 2071 89.240000 3897 6181 3 chr1B.!!$F4 2284
10 TraesCS1D01G010100 chr1B 41973292 41975536 2244 True 702.333333 1020 89.459333 1809 4294 3 chr1B.!!$R1 2485
11 TraesCS1D01G010100 chr2A 550181622 550182365 743 True 933.000000 933 89.150000 1 764 1 chr2A.!!$R2 763
12 TraesCS1D01G010100 chr2A 348049777 348050520 743 True 856.000000 856 87.320000 1 764 1 chr2A.!!$R1 763
13 TraesCS1D01G010100 chr5D 378150484 378151215 731 True 917.000000 917 89.048000 1 764 1 chr5D.!!$R1 763
14 TraesCS1D01G010100 chr6A 155746775 155747510 735 False 891.000000 891 88.391000 1 757 1 chr6A.!!$F1 756
15 TraesCS1D01G010100 chr5A 92207564 92208306 742 True 865.000000 865 87.582000 1 764 1 chr5A.!!$R1 763
16 TraesCS1D01G010100 chr5B 453530466 453531194 728 False 863.000000 863 87.843000 1 764 1 chr5B.!!$F1 763
17 TraesCS1D01G010100 chr5B 228532335 228533068 733 True 431.000000 431 77.604000 1 764 1 chr5B.!!$R1 763
18 TraesCS1D01G010100 chr5B 698019468 698020204 736 True 390.000000 390 76.540000 4 763 1 chr5B.!!$R3 759
19 TraesCS1D01G010100 chr2D 460579323 460580049 726 True 822.000000 822 86.928000 1 764 1 chr2D.!!$R1 763
20 TraesCS1D01G010100 chr2D 313467928 313468591 663 False 610.000000 610 83.357000 1 686 1 chr2D.!!$F1 685
21 TraesCS1D01G010100 chr3D 588851905 588852851 946 True 747.000000 747 80.967000 4264 5211 1 chr3D.!!$R3 947
22 TraesCS1D01G010100 chr3D 92269275 92269952 677 True 359.000000 359 76.496000 55 754 1 chr3D.!!$R1 699
23 TraesCS1D01G010100 chr3D 371341866 371342573 707 False 335.000000 335 75.712000 1 729 1 chr3D.!!$F3 728
24 TraesCS1D01G010100 chr3D 179261802 179262493 691 False 333.000000 333 75.664000 49 760 1 chr3D.!!$F1 711
25 TraesCS1D01G010100 chr6D 34947598 34948663 1065 True 728.000000 728 79.217000 4275 5334 1 chr6D.!!$R2 1059
26 TraesCS1D01G010100 chr2B 338777662 338778387 725 True 608.000000 608 81.915000 1 749 1 chr2B.!!$R2 748
27 TraesCS1D01G010100 chr2B 361648314 361648994 680 False 435.000000 435 78.470000 59 760 1 chr2B.!!$F3 701
28 TraesCS1D01G010100 chr4B 428958614 428959298 684 True 392.000000 392 77.260000 59 763 1 chr4B.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 920 0.393820 TGGAACACCGGTAACTGACC 59.606 55.000 6.87 6.13 45.91 4.02 F
2016 2201 0.035915 TTCCCGTTCGGCATGAATCA 60.036 50.000 5.66 0.00 39.21 2.57 F
2458 2649 0.106469 TTGGGTAAACCTGCACTGCA 60.106 50.000 3.11 3.11 41.11 4.41 F
3446 3869 1.070758 AGTGACTGTGGGTAAGCACTG 59.929 52.381 0.00 0.00 33.61 3.66 F
4634 5271 2.359900 CTTACAGCTGGATGTTCCCAC 58.640 52.381 19.93 0.00 35.03 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 2631 0.821711 GTGCAGTGCAGGTTTACCCA 60.822 55.000 20.42 0.00 40.08 4.51 R
3130 3529 1.299976 GTGGAACTAGCCCACCTGG 59.700 63.158 19.10 0.00 46.30 4.45 R
3565 3988 2.569853 TCTCGTGGTCATGGTTGGTTAT 59.430 45.455 0.00 0.00 0.00 1.89 R
4671 5308 1.998315 CTGCACTTGAAGAGGACATCG 59.002 52.381 0.00 0.00 0.00 3.84 R
6195 7222 0.105964 GCTGTGTGGTACCACTGTCA 59.894 55.000 37.91 30.36 46.30 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 1.283736 GACACCGAAACAAGACGTGT 58.716 50.000 0.00 0.00 44.64 4.49
136 138 1.039233 ATTCGGGCATGAAGGGCAAG 61.039 55.000 0.00 0.00 34.52 4.01
220 223 8.953990 GCAGTGTACGCCATATAAAAATTTTAG 58.046 33.333 3.34 0.00 0.00 1.85
303 309 3.223157 CATTCCGTTTGCGTGTTCTAAC 58.777 45.455 0.00 0.00 36.15 2.34
305 311 2.553086 TCCGTTTGCGTGTTCTAACTT 58.447 42.857 0.00 0.00 36.15 2.66
306 312 2.937799 TCCGTTTGCGTGTTCTAACTTT 59.062 40.909 0.00 0.00 36.15 2.66
307 313 3.374678 TCCGTTTGCGTGTTCTAACTTTT 59.625 39.130 0.00 0.00 36.15 2.27
308 314 4.099824 CCGTTTGCGTGTTCTAACTTTTT 58.900 39.130 0.00 0.00 36.15 1.94
309 315 4.203563 CCGTTTGCGTGTTCTAACTTTTTC 59.796 41.667 0.00 0.00 36.15 2.29
310 316 4.203563 CGTTTGCGTGTTCTAACTTTTTCC 59.796 41.667 0.00 0.00 0.00 3.13
311 317 4.966965 TTGCGTGTTCTAACTTTTTCCA 57.033 36.364 0.00 0.00 0.00 3.53
312 318 5.508200 TTGCGTGTTCTAACTTTTTCCAT 57.492 34.783 0.00 0.00 0.00 3.41
313 319 4.854399 TGCGTGTTCTAACTTTTTCCATG 58.146 39.130 0.00 0.00 0.00 3.66
314 320 4.576873 TGCGTGTTCTAACTTTTTCCATGA 59.423 37.500 0.00 0.00 0.00 3.07
315 321 5.240623 TGCGTGTTCTAACTTTTTCCATGAT 59.759 36.000 0.00 0.00 0.00 2.45
316 322 6.428465 TGCGTGTTCTAACTTTTTCCATGATA 59.572 34.615 0.00 0.00 0.00 2.15
317 323 6.741358 GCGTGTTCTAACTTTTTCCATGATAC 59.259 38.462 0.00 0.00 0.00 2.24
318 324 7.572353 GCGTGTTCTAACTTTTTCCATGATACA 60.572 37.037 0.00 0.00 0.00 2.29
319 325 8.450964 CGTGTTCTAACTTTTTCCATGATACAT 58.549 33.333 0.00 0.00 0.00 2.29
322 328 9.573133 GTTCTAACTTTTTCCATGATACATTGG 57.427 33.333 0.00 0.00 0.00 3.16
342 348 3.133003 TGGTTTTACCCATGTTGTTGGTG 59.867 43.478 1.23 0.00 37.50 4.17
371 377 3.601435 TCCAAATAAGCCGATCGAACAA 58.399 40.909 18.66 0.00 0.00 2.83
383 389 4.570772 CCGATCGAACAATGAACTTACCAT 59.429 41.667 18.66 0.00 0.00 3.55
537 543 6.214615 TGGGTCAATAAGATCACAGACCTTTA 59.785 38.462 16.87 6.75 43.77 1.85
555 562 9.342736 AGACCTTTAATAGTAGTTTTCCCCTTA 57.657 33.333 0.00 0.00 0.00 2.69
614 622 7.339721 GGAATCATGCATCTCTCCAAATATCAT 59.660 37.037 0.00 0.00 0.00 2.45
771 782 5.778542 AGCCCTCAAGATAGTAAACCTCTA 58.221 41.667 0.00 0.00 0.00 2.43
798 810 2.485038 ACGACGTGTGTGTTTTCCTTTT 59.515 40.909 0.00 0.00 0.00 2.27
874 886 1.263356 TCGATCTTGACCCTCCGTTT 58.737 50.000 0.00 0.00 0.00 3.60
903 920 0.393820 TGGAACACCGGTAACTGACC 59.606 55.000 6.87 6.13 45.91 4.02
912 929 0.883833 GGTAACTGACCGACGAAGGA 59.116 55.000 7.84 0.00 38.87 3.36
939 965 1.078567 GAGGAACAGAGCAGCCTGG 60.079 63.158 13.53 0.00 38.44 4.45
983 1010 1.603678 GCGTCTCCGGTGAACTTGTTA 60.604 52.381 7.99 0.00 33.68 2.41
984 1011 2.056577 CGTCTCCGGTGAACTTGTTAC 58.943 52.381 7.99 0.00 0.00 2.50
1021 1054 3.065306 CCGGCCAAGACCACTACA 58.935 61.111 2.24 0.00 0.00 2.74
1125 1172 1.002430 GATGCCTATGCCGATGAGGAA 59.998 52.381 0.00 0.00 45.00 3.36
1126 1173 0.106708 TGCCTATGCCGATGAGGAAC 59.893 55.000 0.00 0.00 45.00 3.62
1129 1176 1.688735 CCTATGCCGATGAGGAACTGA 59.311 52.381 0.00 0.00 41.55 3.41
1133 1208 1.519455 CCGATGAGGAACTGACGGC 60.519 63.158 0.00 0.00 41.55 5.68
1135 1210 1.519455 GATGAGGAACTGACGGCGG 60.519 63.158 13.24 0.00 41.55 6.13
1210 1285 7.013083 CCGGTAAGATTCTTTCTGCTAGTACTA 59.987 40.741 3.86 1.89 33.93 1.82
1211 1286 8.071368 CGGTAAGATTCTTTCTGCTAGTACTAG 58.929 40.741 23.25 23.25 33.93 2.57
1212 1287 8.905850 GGTAAGATTCTTTCTGCTAGTACTAGT 58.094 37.037 26.76 0.00 33.93 2.57
1247 1340 0.105964 TTCCTCCTTCCGTGTGTGTG 59.894 55.000 0.00 0.00 0.00 3.82
1315 1413 3.893200 TCACTCTTCGGTGAAAAGACCTA 59.107 43.478 0.00 0.00 42.35 3.08
1345 1495 3.189287 AGATGGTTCACATTCAGCGTTTC 59.811 43.478 0.00 0.00 40.72 2.78
1362 1512 4.793353 GCGTTTCGAAGCCTATACTGATCT 60.793 45.833 6.41 0.00 0.00 2.75
1363 1513 4.677378 CGTTTCGAAGCCTATACTGATCTG 59.323 45.833 6.41 0.00 0.00 2.90
1366 1516 5.854010 TCGAAGCCTATACTGATCTGTTT 57.146 39.130 10.76 5.78 0.00 2.83
1400 1550 0.693049 GGTGTGGTCATCTTGAGGGT 59.307 55.000 0.00 0.00 0.00 4.34
1443 1594 7.156876 ACAACTCAACACTTGAAATCAAAGA 57.843 32.000 0.00 0.00 39.58 2.52
1448 1599 7.987458 ACTCAACACTTGAAATCAAAGAGAGTA 59.013 33.333 16.43 0.00 39.58 2.59
1533 1685 3.249091 CTTGAACGAGTCTGGTCTCATG 58.751 50.000 0.00 0.00 34.46 3.07
1546 1698 5.849475 TCTGGTCTCATGCCCCTAATATTAA 59.151 40.000 0.00 0.00 0.00 1.40
1578 1730 3.764434 TGTAATAATCAGGCCGGCAAAAA 59.236 39.130 30.85 10.89 0.00 1.94
1650 1802 7.618117 TGAGTTGGAATCTGTATGTAGTCCTAA 59.382 37.037 0.00 0.00 0.00 2.69
1693 1849 3.701040 GGTTGATGTTGCCACCTGATATT 59.299 43.478 0.00 0.00 0.00 1.28
1694 1850 4.440525 GGTTGATGTTGCCACCTGATATTG 60.441 45.833 0.00 0.00 0.00 1.90
1695 1851 3.966979 TGATGTTGCCACCTGATATTGT 58.033 40.909 0.00 0.00 0.00 2.71
1696 1852 5.109500 TGATGTTGCCACCTGATATTGTA 57.891 39.130 0.00 0.00 0.00 2.41
1697 1853 5.693961 TGATGTTGCCACCTGATATTGTAT 58.306 37.500 0.00 0.00 0.00 2.29
1698 1854 6.128486 TGATGTTGCCACCTGATATTGTATT 58.872 36.000 0.00 0.00 0.00 1.89
1699 1855 6.606796 TGATGTTGCCACCTGATATTGTATTT 59.393 34.615 0.00 0.00 0.00 1.40
1857 2021 3.282374 AACCCCGGCTGTTCCCATC 62.282 63.158 0.00 0.00 0.00 3.51
1879 2043 2.676463 GCTAACTCTGAGGTTCCTGCTG 60.676 54.545 9.85 0.00 0.00 4.41
1886 2050 3.123620 GGTTCCTGCTGCTCGCTG 61.124 66.667 0.00 0.21 40.11 5.18
1887 2051 3.797546 GTTCCTGCTGCTCGCTGC 61.798 66.667 12.97 12.97 40.11 5.25
2016 2201 0.035915 TTCCCGTTCGGCATGAATCA 60.036 50.000 5.66 0.00 39.21 2.57
2017 2202 0.461870 TCCCGTTCGGCATGAATCAG 60.462 55.000 5.66 0.00 39.21 2.90
2045 2230 3.068691 TCGAGGGCTTCCAGGTCG 61.069 66.667 0.00 0.00 0.00 4.79
2274 2465 1.875813 GATCCGACTGCAGCACGAG 60.876 63.158 27.33 19.28 0.00 4.18
2453 2644 1.617850 CAAGCATTGGGTAAACCTGCA 59.382 47.619 12.69 0.00 43.94 4.41
2454 2645 1.256812 AGCATTGGGTAAACCTGCAC 58.743 50.000 12.69 0.00 41.58 4.57
2455 2646 1.203050 AGCATTGGGTAAACCTGCACT 60.203 47.619 12.69 0.00 41.58 4.40
2456 2647 1.067635 GCATTGGGTAAACCTGCACTG 60.068 52.381 6.91 0.77 39.54 3.66
2457 2648 1.067635 CATTGGGTAAACCTGCACTGC 60.068 52.381 0.00 0.00 41.11 4.40
2458 2649 0.106469 TTGGGTAAACCTGCACTGCA 60.106 50.000 3.11 3.11 41.11 4.41
2474 2667 2.093288 ACTGCACTGCACTATACATGCT 60.093 45.455 0.00 0.00 43.77 3.79
2475 2668 2.941064 CTGCACTGCACTATACATGCTT 59.059 45.455 0.00 0.00 43.77 3.91
2479 2672 5.589855 TGCACTGCACTATACATGCTTATTT 59.410 36.000 0.00 0.00 43.77 1.40
2519 2716 8.696043 ATAGATAGATATCCTCTGTGCATCTC 57.304 38.462 13.24 0.00 35.28 2.75
2688 2907 5.500290 CGTTTGAGCCAGATAATAACACGTC 60.500 44.000 0.00 0.00 0.00 4.34
2909 3128 1.610522 GCAACAGCTCCTGTGTCAATT 59.389 47.619 0.00 0.00 44.62 2.32
2943 3162 2.800250 AGGCTATTTCTGCAAGTGCTT 58.200 42.857 4.69 0.00 42.66 3.91
3130 3529 2.627699 TGCCAAGTCTGGAATTTGAACC 59.372 45.455 0.00 0.00 46.92 3.62
3446 3869 1.070758 AGTGACTGTGGGTAAGCACTG 59.929 52.381 0.00 0.00 33.61 3.66
3515 3938 3.067320 TCTGAATCTAGAGGATGCACACG 59.933 47.826 0.00 0.00 35.17 4.49
3550 3973 6.598753 TTACTAAATGCGGAATACAAGAGC 57.401 37.500 0.00 0.00 0.00 4.09
3764 4198 7.047891 TCATGGAGTATGCAGGTACTTTTAAG 58.952 38.462 1.63 0.00 42.42 1.85
3765 4199 6.368779 TGGAGTATGCAGGTACTTTTAAGT 57.631 37.500 1.63 0.29 42.91 2.24
3766 4200 6.775708 TGGAGTATGCAGGTACTTTTAAGTT 58.224 36.000 1.63 0.00 40.37 2.66
3767 4201 7.228590 TGGAGTATGCAGGTACTTTTAAGTTT 58.771 34.615 1.63 0.00 40.37 2.66
3768 4202 7.722285 TGGAGTATGCAGGTACTTTTAAGTTTT 59.278 33.333 1.63 0.00 40.37 2.43
3769 4203 9.223099 GGAGTATGCAGGTACTTTTAAGTTTTA 57.777 33.333 1.63 0.00 40.37 1.52
3863 4300 7.739498 TTTGGATAGGTGTAGTCAAACTTTC 57.261 36.000 0.00 0.00 0.00 2.62
4530 5166 4.137543 AGAAGTCCATCAAGGTTGACAAC 58.862 43.478 9.97 9.97 40.49 3.32
4634 5271 2.359900 CTTACAGCTGGATGTTCCCAC 58.640 52.381 19.93 0.00 35.03 4.61
4671 5308 1.941975 GTAGCGAGAGGGAGTCTGTAC 59.058 57.143 0.00 0.00 34.71 2.90
5254 5897 8.791327 TGCACAATCTGAAGATTATAGTCAAA 57.209 30.769 5.26 0.00 42.41 2.69
5304 5947 2.028748 GGCACCAGATGATGTTGCTTTT 60.029 45.455 0.00 0.00 0.00 2.27
5395 6042 3.557577 TGGTTTGATTGCATTGAGACG 57.442 42.857 0.00 0.00 0.00 4.18
5483 6130 7.016153 AGGATCTAATTGCCGTGGATTTATA 57.984 36.000 0.00 0.00 0.00 0.98
5484 6131 7.458397 AGGATCTAATTGCCGTGGATTTATAA 58.542 34.615 0.00 0.00 0.00 0.98
5485 6132 8.109634 AGGATCTAATTGCCGTGGATTTATAAT 58.890 33.333 0.00 0.00 0.00 1.28
5565 6212 8.613060 ATGCCTACATTTGATATCACTTAGTG 57.387 34.615 4.48 5.94 30.07 2.74
5591 6238 3.260884 TCACCTCAGTAACTTCATCCCAC 59.739 47.826 0.00 0.00 0.00 4.61
5605 6252 3.568007 TCATCCCACTGTTAACTGTTTGC 59.432 43.478 14.75 0.00 0.00 3.68
5613 6260 5.238432 CACTGTTAACTGTTTGCCAGATGTA 59.762 40.000 14.75 0.00 44.49 2.29
5614 6261 5.238650 ACTGTTAACTGTTTGCCAGATGTAC 59.761 40.000 11.94 0.00 44.49 2.90
5644 6291 4.621991 CAATCGATGTACTAGGGTTCCTG 58.378 47.826 0.00 0.00 34.61 3.86
5665 6673 5.237996 CCTGCATGTGAAGTTCATACATAGG 59.762 44.000 9.18 10.39 33.57 2.57
5676 6684 6.707290 AGTTCATACATAGGCTTTGTGTGTA 58.293 36.000 25.45 17.83 37.44 2.90
5742 6754 7.221450 TGATTGTACTATTATGTGTAAGGGGC 58.779 38.462 0.00 0.00 0.00 5.80
5812 6836 5.317733 TGAGGGTAAAATAAAATGGTGCG 57.682 39.130 0.00 0.00 0.00 5.34
5856 6882 8.743085 AGCAGAATCAAGTTATTATGATGTGT 57.257 30.769 0.00 0.00 36.44 3.72
5857 6883 8.834465 AGCAGAATCAAGTTATTATGATGTGTC 58.166 33.333 0.00 0.00 36.44 3.67
5858 6884 8.072567 GCAGAATCAAGTTATTATGATGTGTCC 58.927 37.037 0.00 0.00 36.44 4.02
5859 6885 9.112725 CAGAATCAAGTTATTATGATGTGTCCA 57.887 33.333 0.00 0.00 36.44 4.02
5860 6886 9.685276 AGAATCAAGTTATTATGATGTGTCCAA 57.315 29.630 0.00 0.00 36.44 3.53
5884 6910 1.605710 CCAAAGACTGAGCCAGTGTTG 59.394 52.381 15.19 14.97 45.10 3.33
5885 6911 1.002033 CAAAGACTGAGCCAGTGTTGC 60.002 52.381 15.19 2.42 45.10 4.17
5893 6919 1.801178 GAGCCAGTGTTGCTGTAACTC 59.199 52.381 9.94 6.40 43.55 3.01
5982 7008 2.063266 GGTTGTAACGCTGACGAATCA 58.937 47.619 0.00 0.00 43.93 2.57
6004 7030 2.577763 GAACTGCGTACCAATGCGGC 62.578 60.000 0.00 0.00 46.31 6.53
6005 7031 3.876198 CTGCGTACCAATGCGGCC 61.876 66.667 0.00 0.00 40.77 6.13
6009 7035 4.123545 GTACCAATGCGGCCCCCT 62.124 66.667 0.00 0.00 39.03 4.79
6010 7036 2.367107 TACCAATGCGGCCCCCTA 60.367 61.111 0.00 0.00 39.03 3.53
6055 7082 2.490217 CGATCGCCGGAGAAGTGT 59.510 61.111 13.28 0.00 33.91 3.55
6056 7083 1.586564 CGATCGCCGGAGAAGTGTC 60.587 63.158 13.28 4.04 33.91 3.67
6082 7109 1.227002 CCTAGCGCGGAGGAAGAAC 60.227 63.158 22.79 0.00 35.99 3.01
6146 7173 4.646572 AGGGTGCTAAGAAGAAGAAAGTG 58.353 43.478 0.00 0.00 0.00 3.16
6148 7175 4.390264 GGTGCTAAGAAGAAGAAAGTGGT 58.610 43.478 0.00 0.00 0.00 4.16
6181 7208 4.690748 TGCAACTGAACAGTGCTATCTTAC 59.309 41.667 20.43 0.00 41.58 2.34
6182 7209 4.093556 GCAACTGAACAGTGCTATCTTACC 59.906 45.833 8.25 0.00 41.58 2.85
6183 7210 5.482908 CAACTGAACAGTGCTATCTTACCT 58.517 41.667 8.25 0.00 41.58 3.08
6184 7211 6.631016 CAACTGAACAGTGCTATCTTACCTA 58.369 40.000 8.25 0.00 41.58 3.08
6185 7212 6.852420 ACTGAACAGTGCTATCTTACCTAA 57.148 37.500 6.67 0.00 40.75 2.69
6186 7213 6.868622 ACTGAACAGTGCTATCTTACCTAAG 58.131 40.000 6.67 0.00 40.75 2.18
6187 7214 6.663953 ACTGAACAGTGCTATCTTACCTAAGA 59.336 38.462 6.67 0.00 42.14 2.10
6188 7215 7.101652 TGAACAGTGCTATCTTACCTAAGAG 57.898 40.000 1.47 0.00 44.67 2.85
6189 7216 6.890268 TGAACAGTGCTATCTTACCTAAGAGA 59.110 38.462 1.47 0.00 44.67 3.10
6190 7217 7.396339 TGAACAGTGCTATCTTACCTAAGAGAA 59.604 37.037 1.47 0.00 44.67 2.87
6191 7218 7.341445 ACAGTGCTATCTTACCTAAGAGAAG 57.659 40.000 1.47 2.98 44.67 2.85
6192 7219 7.120051 ACAGTGCTATCTTACCTAAGAGAAGA 58.880 38.462 9.74 0.00 44.67 2.87
6193 7220 7.616150 ACAGTGCTATCTTACCTAAGAGAAGAA 59.384 37.037 9.74 0.18 44.67 2.52
6194 7221 7.918562 CAGTGCTATCTTACCTAAGAGAAGAAC 59.081 40.741 9.74 9.29 44.67 3.01
6195 7222 7.837187 AGTGCTATCTTACCTAAGAGAAGAACT 59.163 37.037 11.71 11.71 44.67 3.01
6196 7223 7.918562 GTGCTATCTTACCTAAGAGAAGAACTG 59.081 40.741 9.74 0.00 44.67 3.16
6197 7224 7.834681 TGCTATCTTACCTAAGAGAAGAACTGA 59.165 37.037 9.74 0.00 44.67 3.41
6198 7225 8.132995 GCTATCTTACCTAAGAGAAGAACTGAC 58.867 40.741 9.74 0.00 44.67 3.51
6199 7226 9.179909 CTATCTTACCTAAGAGAAGAACTGACA 57.820 37.037 1.47 0.00 44.67 3.58
6200 7227 7.455641 TCTTACCTAAGAGAAGAACTGACAG 57.544 40.000 0.00 0.00 37.40 3.51
6201 7228 7.005296 TCTTACCTAAGAGAAGAACTGACAGT 58.995 38.462 1.07 1.07 37.40 3.55
6202 7229 5.461032 ACCTAAGAGAAGAACTGACAGTG 57.539 43.478 9.33 0.00 0.00 3.66
6203 7230 4.282195 ACCTAAGAGAAGAACTGACAGTGG 59.718 45.833 9.33 4.36 0.00 4.00
6204 7231 4.282195 CCTAAGAGAAGAACTGACAGTGGT 59.718 45.833 9.33 0.00 0.00 4.16
6205 7232 5.477291 CCTAAGAGAAGAACTGACAGTGGTA 59.523 44.000 9.33 0.00 0.00 3.25
6206 7233 4.857509 AGAGAAGAACTGACAGTGGTAC 57.142 45.455 9.33 2.22 0.00 3.34
6207 7234 3.574826 AGAGAAGAACTGACAGTGGTACC 59.425 47.826 9.33 4.43 0.00 3.34
6208 7235 3.305720 AGAAGAACTGACAGTGGTACCA 58.694 45.455 11.60 11.60 0.00 3.25
6209 7236 3.069729 AGAAGAACTGACAGTGGTACCAC 59.930 47.826 33.72 33.72 46.50 4.16
6217 7244 4.868026 GTGGTACCACACAGCACA 57.132 55.556 35.21 0.00 45.53 4.57
6218 7245 2.616969 GTGGTACCACACAGCACAG 58.383 57.895 35.21 0.00 45.53 3.66
6219 7246 1.227823 TGGTACCACACAGCACAGC 60.228 57.895 11.60 0.00 0.00 4.40
6220 7247 1.966451 GGTACCACACAGCACAGCC 60.966 63.158 7.15 0.00 0.00 4.85
6221 7248 1.227823 GTACCACACAGCACAGCCA 60.228 57.895 0.00 0.00 0.00 4.75
6222 7249 0.606401 GTACCACACAGCACAGCCAT 60.606 55.000 0.00 0.00 0.00 4.40
6223 7250 0.980423 TACCACACAGCACAGCCATA 59.020 50.000 0.00 0.00 0.00 2.74
6224 7251 0.606401 ACCACACAGCACAGCCATAC 60.606 55.000 0.00 0.00 0.00 2.39
6225 7252 0.321919 CCACACAGCACAGCCATACT 60.322 55.000 0.00 0.00 0.00 2.12
6226 7253 1.081892 CACACAGCACAGCCATACTC 58.918 55.000 0.00 0.00 0.00 2.59
6227 7254 0.686789 ACACAGCACAGCCATACTCA 59.313 50.000 0.00 0.00 0.00 3.41
6228 7255 1.280133 ACACAGCACAGCCATACTCAT 59.720 47.619 0.00 0.00 0.00 2.90
6229 7256 2.290514 ACACAGCACAGCCATACTCATT 60.291 45.455 0.00 0.00 0.00 2.57
6230 7257 2.751259 CACAGCACAGCCATACTCATTT 59.249 45.455 0.00 0.00 0.00 2.32
6231 7258 3.192001 CACAGCACAGCCATACTCATTTT 59.808 43.478 0.00 0.00 0.00 1.82
6232 7259 3.441572 ACAGCACAGCCATACTCATTTTC 59.558 43.478 0.00 0.00 0.00 2.29
6233 7260 3.441222 CAGCACAGCCATACTCATTTTCA 59.559 43.478 0.00 0.00 0.00 2.69
6234 7261 3.693085 AGCACAGCCATACTCATTTTCAG 59.307 43.478 0.00 0.00 0.00 3.02
6235 7262 3.441572 GCACAGCCATACTCATTTTCAGT 59.558 43.478 0.00 0.00 0.00 3.41
6236 7263 4.082571 GCACAGCCATACTCATTTTCAGTT 60.083 41.667 0.00 0.00 0.00 3.16
6237 7264 5.634896 CACAGCCATACTCATTTTCAGTTC 58.365 41.667 0.00 0.00 0.00 3.01
6238 7265 4.702131 ACAGCCATACTCATTTTCAGTTCC 59.298 41.667 0.00 0.00 0.00 3.62
6239 7266 4.701651 CAGCCATACTCATTTTCAGTTCCA 59.298 41.667 0.00 0.00 0.00 3.53
6240 7267 5.359009 CAGCCATACTCATTTTCAGTTCCAT 59.641 40.000 0.00 0.00 0.00 3.41
6241 7268 5.954150 AGCCATACTCATTTTCAGTTCCATT 59.046 36.000 0.00 0.00 0.00 3.16
6242 7269 6.096001 AGCCATACTCATTTTCAGTTCCATTC 59.904 38.462 0.00 0.00 0.00 2.67
6243 7270 6.096001 GCCATACTCATTTTCAGTTCCATTCT 59.904 38.462 0.00 0.00 0.00 2.40
6244 7271 7.283127 GCCATACTCATTTTCAGTTCCATTCTA 59.717 37.037 0.00 0.00 0.00 2.10
6245 7272 8.616076 CCATACTCATTTTCAGTTCCATTCTAC 58.384 37.037 0.00 0.00 0.00 2.59
6246 7273 9.388506 CATACTCATTTTCAGTTCCATTCTACT 57.611 33.333 0.00 0.00 0.00 2.57
6247 7274 7.913674 ACTCATTTTCAGTTCCATTCTACTC 57.086 36.000 0.00 0.00 0.00 2.59
6248 7275 6.881602 ACTCATTTTCAGTTCCATTCTACTCC 59.118 38.462 0.00 0.00 0.00 3.85
6249 7276 6.180472 TCATTTTCAGTTCCATTCTACTCCC 58.820 40.000 0.00 0.00 0.00 4.30
6250 7277 5.843019 TTTTCAGTTCCATTCTACTCCCT 57.157 39.130 0.00 0.00 0.00 4.20
6251 7278 5.422214 TTTCAGTTCCATTCTACTCCCTC 57.578 43.478 0.00 0.00 0.00 4.30
6252 7279 3.375699 TCAGTTCCATTCTACTCCCTCC 58.624 50.000 0.00 0.00 0.00 4.30
6253 7280 2.101582 CAGTTCCATTCTACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
6254 7281 2.108970 GTTCCATTCTACTCCCTCCGT 58.891 52.381 0.00 0.00 0.00 4.69
6255 7282 2.500504 GTTCCATTCTACTCCCTCCGTT 59.499 50.000 0.00 0.00 0.00 4.44
6256 7283 2.385803 TCCATTCTACTCCCTCCGTTC 58.614 52.381 0.00 0.00 0.00 3.95
6257 7284 1.067212 CCATTCTACTCCCTCCGTTCG 59.933 57.143 0.00 0.00 0.00 3.95
6258 7285 1.067212 CATTCTACTCCCTCCGTTCGG 59.933 57.143 4.74 4.74 0.00 4.30
6259 7286 0.329261 TTCTACTCCCTCCGTTCGGA 59.671 55.000 13.34 13.34 0.00 4.55
6260 7287 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
6261 7288 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
6262 7289 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
6263 7290 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6264 7291 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6265 7292 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6266 7293 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6267 7294 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6268 7295 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6269 7296 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6270 7297 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
6271 7298 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
6272 7299 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
6273 7300 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
6274 7301 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
6275 7302 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
6276 7303 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
6277 7304 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
6278 7305 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
6279 7306 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
6280 7307 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
6281 7308 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
6282 7309 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
6283 7310 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
6284 7311 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
6285 7312 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
6286 7313 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
6287 7314 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
6288 7315 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
6289 7316 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
6290 7317 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
6291 7318 7.872881 TGTCGTAGAAATGGATGTATCTAGAC 58.127 38.462 0.00 0.00 39.69 2.59
6292 7319 7.016466 GTCGTAGAAATGGATGTATCTAGACG 58.984 42.308 0.00 0.00 39.69 4.18
6293 7320 6.709397 TCGTAGAAATGGATGTATCTAGACGT 59.291 38.462 0.00 0.00 0.00 4.34
6294 7321 6.797513 CGTAGAAATGGATGTATCTAGACGTG 59.202 42.308 0.00 0.00 0.00 4.49
6295 7322 6.716934 AGAAATGGATGTATCTAGACGTGT 57.283 37.500 0.00 0.00 0.00 4.49
6296 7323 7.113658 AGAAATGGATGTATCTAGACGTGTT 57.886 36.000 0.00 0.00 0.00 3.32
6297 7324 7.556844 AGAAATGGATGTATCTAGACGTGTTT 58.443 34.615 0.00 0.00 0.00 2.83
6298 7325 8.041323 AGAAATGGATGTATCTAGACGTGTTTT 58.959 33.333 0.00 0.00 0.00 2.43
6299 7326 9.309516 GAAATGGATGTATCTAGACGTGTTTTA 57.690 33.333 0.00 0.00 0.00 1.52
6300 7327 8.873215 AATGGATGTATCTAGACGTGTTTTAG 57.127 34.615 0.00 0.00 0.00 1.85
6301 7328 7.400599 TGGATGTATCTAGACGTGTTTTAGT 57.599 36.000 0.00 0.00 0.00 2.24
6302 7329 7.833786 TGGATGTATCTAGACGTGTTTTAGTT 58.166 34.615 0.00 0.00 0.00 2.24
6303 7330 7.972277 TGGATGTATCTAGACGTGTTTTAGTTC 59.028 37.037 0.00 0.00 0.00 3.01
6304 7331 8.189460 GGATGTATCTAGACGTGTTTTAGTTCT 58.811 37.037 0.00 0.00 0.00 3.01
6307 7334 9.440773 TGTATCTAGACGTGTTTTAGTTCTAGA 57.559 33.333 8.64 8.64 38.94 2.43
6311 7338 9.440773 TCTAGACGTGTTTTAGTTCTAGATACA 57.559 33.333 0.00 0.00 32.48 2.29
6314 7341 8.189460 AGACGTGTTTTAGTTCTAGATACATCC 58.811 37.037 0.00 0.00 0.00 3.51
6315 7342 7.833786 ACGTGTTTTAGTTCTAGATACATCCA 58.166 34.615 0.00 0.00 0.00 3.41
6316 7343 8.475639 ACGTGTTTTAGTTCTAGATACATCCAT 58.524 33.333 0.00 0.00 0.00 3.41
6317 7344 9.314321 CGTGTTTTAGTTCTAGATACATCCATT 57.686 33.333 0.00 0.00 0.00 3.16
6321 7348 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
6322 7349 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
6323 7350 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
6324 7351 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
6325 7352 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 2.353610 CCCACTTGCCCTTCATGCC 61.354 63.158 0.00 0.00 0.00 4.40
136 138 7.448748 ACAGACATATAAAAGTTTCACCCAC 57.551 36.000 0.00 0.00 0.00 4.61
220 223 0.455815 CTATCCTGCCCGGCAAAAAC 59.544 55.000 14.45 0.00 38.41 2.43
303 309 9.150348 GGTAAAACCAATGTATCATGGAAAAAG 57.850 33.333 0.00 0.00 39.12 2.27
305 311 7.235606 TGGGTAAAACCAATGTATCATGGAAAA 59.764 33.333 0.00 0.00 41.02 2.29
306 312 6.726299 TGGGTAAAACCAATGTATCATGGAAA 59.274 34.615 0.00 0.00 41.02 3.13
307 313 6.256819 TGGGTAAAACCAATGTATCATGGAA 58.743 36.000 0.00 0.00 41.02 3.53
308 314 5.832221 TGGGTAAAACCAATGTATCATGGA 58.168 37.500 0.00 0.00 41.02 3.41
309 315 6.514947 CATGGGTAAAACCAATGTATCATGG 58.485 40.000 5.43 0.00 43.34 3.66
318 324 4.410555 ACCAACAACATGGGTAAAACCAAT 59.589 37.500 0.00 0.00 45.13 3.16
319 325 3.775316 ACCAACAACATGGGTAAAACCAA 59.225 39.130 0.00 0.00 45.13 3.67
320 326 3.133003 CACCAACAACATGGGTAAAACCA 59.867 43.478 0.00 0.00 45.18 3.67
321 327 3.723260 CACCAACAACATGGGTAAAACC 58.277 45.455 0.00 0.00 45.18 3.27
322 328 3.127589 GCACCAACAACATGGGTAAAAC 58.872 45.455 0.00 0.00 45.18 2.43
327 333 0.471591 ATGGCACCAACAACATGGGT 60.472 50.000 0.00 0.00 45.18 4.51
342 348 2.687935 TCGGCTTATTTGGAAGAATGGC 59.312 45.455 0.00 0.00 0.00 4.40
390 396 6.041182 TCTGATTTTATTGCTTGCAGCCATAT 59.959 34.615 5.82 0.00 41.51 1.78
398 404 8.895845 CGTAATATGTCTGATTTTATTGCTTGC 58.104 33.333 0.00 0.00 0.00 4.01
835 847 1.198713 AGCTCACGTCAGGATCCAAT 58.801 50.000 15.82 0.00 0.00 3.16
874 886 1.616865 CCGGTGTTCCACTCTTCAGTA 59.383 52.381 0.00 0.00 34.40 2.74
893 905 0.883833 TCCTTCGTCGGTCAGTTACC 59.116 55.000 0.00 0.00 45.77 2.85
897 914 0.536687 TGTCTCCTTCGTCGGTCAGT 60.537 55.000 0.00 0.00 0.00 3.41
898 915 0.109689 GTGTCTCCTTCGTCGGTCAG 60.110 60.000 0.00 0.00 0.00 3.51
899 916 1.521450 GGTGTCTCCTTCGTCGGTCA 61.521 60.000 0.00 0.00 0.00 4.02
900 917 1.212229 GGTGTCTCCTTCGTCGGTC 59.788 63.158 0.00 0.00 0.00 4.79
903 920 2.178521 CGGGTGTCTCCTTCGTCG 59.821 66.667 0.00 0.00 36.25 5.12
912 929 0.900647 CTCTGTTCCTCCGGGTGTCT 60.901 60.000 0.00 0.00 0.00 3.41
1125 1172 3.382832 CTTCTCCCCGCCGTCAGT 61.383 66.667 0.00 0.00 0.00 3.41
1126 1173 4.148825 CCTTCTCCCCGCCGTCAG 62.149 72.222 0.00 0.00 0.00 3.51
1184 1259 5.012328 ACTAGCAGAAAGAATCTTACCGG 57.988 43.478 0.00 0.00 35.73 5.28
1210 1285 6.678857 AGGAGGAAGGGAAATACTCAAATACT 59.321 38.462 0.00 0.00 0.00 2.12
1211 1286 6.901300 AGGAGGAAGGGAAATACTCAAATAC 58.099 40.000 0.00 0.00 0.00 1.89
1212 1287 7.366551 GGAAGGAGGAAGGGAAATACTCAAATA 60.367 40.741 0.00 0.00 0.00 1.40
1213 1288 6.408770 AAGGAGGAAGGGAAATACTCAAAT 57.591 37.500 0.00 0.00 0.00 2.32
1216 1291 3.780850 GGAAGGAGGAAGGGAAATACTCA 59.219 47.826 0.00 0.00 0.00 3.41
1217 1292 3.181464 CGGAAGGAGGAAGGGAAATACTC 60.181 52.174 0.00 0.00 0.00 2.59
1315 1413 6.114187 TGAATGTGAACCATCTACAAGACT 57.886 37.500 0.00 0.00 31.75 3.24
1345 1495 7.148641 ACATAAACAGATCAGTATAGGCTTCG 58.851 38.462 0.00 0.00 0.00 3.79
1362 1512 6.096036 CACACCACTGAAAACAACATAAACA 58.904 36.000 0.00 0.00 0.00 2.83
1363 1513 5.518487 CCACACCACTGAAAACAACATAAAC 59.482 40.000 0.00 0.00 0.00 2.01
1366 1516 4.274147 ACCACACCACTGAAAACAACATA 58.726 39.130 0.00 0.00 0.00 2.29
1400 1550 1.139853 GTTTTGGACAAATGGCACCCA 59.860 47.619 0.00 0.00 38.19 4.51
1461 1613 7.509546 CAGATTCTAGTTTGCCCTTATCCTTA 58.490 38.462 0.00 0.00 0.00 2.69
1578 1730 9.940166 AAACACGTAACGATTAAGATTCTTTTT 57.060 25.926 3.86 0.00 0.00 1.94
1650 1802 4.281941 ACCATCAGCGTCTATACATCACAT 59.718 41.667 0.00 0.00 0.00 3.21
1693 1849 6.495526 TGACCATCCTCCGATATACAAATACA 59.504 38.462 0.00 0.00 0.00 2.29
1694 1850 6.931838 TGACCATCCTCCGATATACAAATAC 58.068 40.000 0.00 0.00 0.00 1.89
1695 1851 7.383687 GTTGACCATCCTCCGATATACAAATA 58.616 38.462 0.00 0.00 0.00 1.40
1696 1852 6.231211 GTTGACCATCCTCCGATATACAAAT 58.769 40.000 0.00 0.00 0.00 2.32
1697 1853 5.454187 GGTTGACCATCCTCCGATATACAAA 60.454 44.000 0.00 0.00 35.64 2.83
1698 1854 4.039973 GGTTGACCATCCTCCGATATACAA 59.960 45.833 0.00 0.00 35.64 2.41
1699 1855 3.576982 GGTTGACCATCCTCCGATATACA 59.423 47.826 0.00 0.00 35.64 2.29
1782 1939 1.902508 CCAGCCAGTTACCTCTTCTGA 59.097 52.381 0.00 0.00 0.00 3.27
1794 1951 2.846827 AGATTTTACCTAGCCAGCCAGT 59.153 45.455 0.00 0.00 0.00 4.00
1795 1952 3.567478 AGATTTTACCTAGCCAGCCAG 57.433 47.619 0.00 0.00 0.00 4.85
1797 1954 3.815962 GCTAAGATTTTACCTAGCCAGCC 59.184 47.826 0.00 0.00 0.00 4.85
1857 2021 1.737363 GCAGGAACCTCAGAGTTAGCG 60.737 57.143 0.00 0.00 0.00 4.26
1886 2050 2.561885 CAGAGTTGCTGCTGCTGC 59.438 61.111 22.51 22.51 37.90 5.25
1949 2128 2.617274 GGCAACCCTCAAGCGTGAC 61.617 63.158 0.00 0.00 0.00 3.67
2016 2201 3.764466 CCTCGACGAAGCAGCCCT 61.764 66.667 0.00 0.00 0.00 5.19
2017 2202 4.821589 CCCTCGACGAAGCAGCCC 62.822 72.222 0.00 0.00 0.00 5.19
2440 2631 0.821711 GTGCAGTGCAGGTTTACCCA 60.822 55.000 20.42 0.00 40.08 4.51
2453 2644 2.093288 AGCATGTATAGTGCAGTGCAGT 60.093 45.455 27.60 27.60 44.87 4.40
2454 2645 2.558378 AGCATGTATAGTGCAGTGCAG 58.442 47.619 20.42 5.11 44.87 4.41
2455 2646 2.696989 AGCATGTATAGTGCAGTGCA 57.303 45.000 15.37 15.37 44.87 4.57
2456 2647 5.679734 AATAAGCATGTATAGTGCAGTGC 57.320 39.130 8.58 8.58 44.87 4.40
2540 2743 3.200165 AGCCCTCCCAATTCAGTAGTAAC 59.800 47.826 0.00 0.00 0.00 2.50
2542 2745 3.130734 AGCCCTCCCAATTCAGTAGTA 57.869 47.619 0.00 0.00 0.00 1.82
2544 2747 2.224402 GCTAGCCCTCCCAATTCAGTAG 60.224 54.545 2.29 0.00 0.00 2.57
2688 2907 0.961753 GCAGGGTGAACTTTCCCAAG 59.038 55.000 3.04 0.00 45.64 3.61
2855 3074 2.500815 TAGCCTGGACGGACAGAGCT 62.501 60.000 19.77 19.77 43.01 4.09
2943 3162 2.088423 GGTTGCCATCGTAATGTTCCA 58.912 47.619 0.00 0.00 0.00 3.53
3100 3499 2.047179 GACTTGGCACGGGTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
3130 3529 1.299976 GTGGAACTAGCCCACCTGG 59.700 63.158 19.10 0.00 46.30 4.45
3151 3550 7.471539 GCATAGCTTAGATGGTTAGGTTCACTA 60.472 40.741 0.00 0.00 0.00 2.74
3515 3938 6.204688 TCCGCATTTAGTAAATCATCATGGTC 59.795 38.462 5.10 0.00 0.00 4.02
3565 3988 2.569853 TCTCGTGGTCATGGTTGGTTAT 59.430 45.455 0.00 0.00 0.00 1.89
3764 4198 7.148755 TGGCTCGTATACTCTTTTCGTTAAAAC 60.149 37.037 0.56 0.00 31.37 2.43
3765 4199 6.867816 TGGCTCGTATACTCTTTTCGTTAAAA 59.132 34.615 0.56 0.00 33.58 1.52
3766 4200 6.389091 TGGCTCGTATACTCTTTTCGTTAAA 58.611 36.000 0.56 0.00 0.00 1.52
3767 4201 5.953183 TGGCTCGTATACTCTTTTCGTTAA 58.047 37.500 0.56 0.00 0.00 2.01
3768 4202 5.565592 TGGCTCGTATACTCTTTTCGTTA 57.434 39.130 0.56 0.00 0.00 3.18
3769 4203 4.445452 TGGCTCGTATACTCTTTTCGTT 57.555 40.909 0.56 0.00 0.00 3.85
3770 4204 4.360563 CATGGCTCGTATACTCTTTTCGT 58.639 43.478 0.56 0.00 0.00 3.85
3863 4300 3.056304 ACCGGCAACAATCAAAATTTCG 58.944 40.909 0.00 0.00 0.00 3.46
4530 5166 3.077359 GGTGAACTCCTTCTTCATGTGG 58.923 50.000 0.00 0.00 30.46 4.17
4671 5308 1.998315 CTGCACTTGAAGAGGACATCG 59.002 52.381 0.00 0.00 0.00 3.84
4716 5359 2.568090 CCAGCGGCAATCCACAAC 59.432 61.111 1.45 0.00 0.00 3.32
4720 5363 3.626996 CTGACCCAGCGGCAATCCA 62.627 63.158 1.45 0.00 0.00 3.41
5254 5897 2.723530 TCTCCCTGGAAGTTCCTCTT 57.276 50.000 22.41 0.00 37.46 2.85
5304 5947 4.927267 TCATTCTCCCAAGGCTTTAAGA 57.073 40.909 0.00 0.00 0.00 2.10
5371 6018 5.740569 CGTCTCAATGCAATCAAACCATTAG 59.259 40.000 0.00 0.00 0.00 1.73
5395 6042 5.419542 TGGCACATACTCTAATGTCTTGAC 58.580 41.667 0.00 0.00 38.01 3.18
5483 6130 7.307160 CGCCGTGTCTGTTTATACATCATAATT 60.307 37.037 0.00 0.00 32.86 1.40
5484 6131 6.145534 CGCCGTGTCTGTTTATACATCATAAT 59.854 38.462 0.00 0.00 32.86 1.28
5485 6132 5.460748 CGCCGTGTCTGTTTATACATCATAA 59.539 40.000 0.00 0.00 32.86 1.90
5565 6212 6.049790 GGGATGAAGTTACTGAGGTGATAAC 58.950 44.000 0.00 0.00 0.00 1.89
5605 6252 4.214980 GATTGCCAAATCGTACATCTGG 57.785 45.455 0.00 0.00 33.25 3.86
5625 6272 2.029623 GCAGGAACCCTAGTACATCGA 58.970 52.381 0.00 0.00 29.64 3.59
5630 6277 2.500098 TCACATGCAGGAACCCTAGTAC 59.500 50.000 4.84 0.00 29.64 2.73
5644 6291 4.818546 AGCCTATGTATGAACTTCACATGC 59.181 41.667 0.00 0.00 34.78 4.06
5728 6739 4.490899 ACAATACGCCCCTTACACATAA 57.509 40.909 0.00 0.00 0.00 1.90
5742 6754 6.925718 ACCATGACTATCATCAGAACAATACG 59.074 38.462 0.00 0.00 34.28 3.06
5802 6826 5.950758 TTAACATACAGACGCACCATTTT 57.049 34.783 0.00 0.00 0.00 1.82
5810 6834 5.063438 TGCTCTCAAATTAACATACAGACGC 59.937 40.000 0.00 0.00 0.00 5.19
5812 6836 7.834068 TCTGCTCTCAAATTAACATACAGAC 57.166 36.000 0.00 0.00 0.00 3.51
5856 6882 2.487265 GGCTCAGTCTTTGGAGTTTGGA 60.487 50.000 0.00 0.00 33.66 3.53
5857 6883 1.882623 GGCTCAGTCTTTGGAGTTTGG 59.117 52.381 0.00 0.00 33.66 3.28
5858 6884 2.551459 CTGGCTCAGTCTTTGGAGTTTG 59.449 50.000 0.00 0.00 33.66 2.93
5859 6885 2.173569 ACTGGCTCAGTCTTTGGAGTTT 59.826 45.455 2.38 0.00 41.21 2.66
5860 6886 1.771255 ACTGGCTCAGTCTTTGGAGTT 59.229 47.619 2.38 0.00 41.21 3.01
5861 6887 1.071385 CACTGGCTCAGTCTTTGGAGT 59.929 52.381 5.02 0.00 43.43 3.85
5862 6888 1.071385 ACACTGGCTCAGTCTTTGGAG 59.929 52.381 5.02 0.00 43.43 3.86
5884 6910 6.462073 TGTTCAAGTTATTCGAGTTACAGC 57.538 37.500 0.00 0.00 0.00 4.40
5885 6911 8.495949 ACATTGTTCAAGTTATTCGAGTTACAG 58.504 33.333 0.00 0.00 0.00 2.74
5893 6919 7.744715 GTGGTTCTACATTGTTCAAGTTATTCG 59.255 37.037 0.00 0.00 0.00 3.34
5939 6965 2.678336 GACAAATCTTAGCCAAGTCCGG 59.322 50.000 0.00 0.00 33.20 5.14
5940 6966 3.334691 TGACAAATCTTAGCCAAGTCCG 58.665 45.455 0.00 0.00 33.20 4.79
5982 7008 1.635663 GCATTGGTACGCAGTTCGCT 61.636 55.000 0.00 0.00 37.78 4.93
5984 7010 1.058748 CGCATTGGTACGCAGTTCG 59.941 57.895 0.00 0.00 37.78 3.95
5987 7013 3.124921 GCCGCATTGGTACGCAGT 61.125 61.111 0.00 0.00 41.65 4.40
5994 7020 3.809013 CTAGGGGGCCGCATTGGT 61.809 66.667 23.67 3.78 41.21 3.67
5995 7021 4.586235 CCTAGGGGGCCGCATTGG 62.586 72.222 23.67 20.93 42.50 3.16
6008 7034 1.435256 CCCACCCAACCTATCCCTAG 58.565 60.000 0.00 0.00 0.00 3.02
6009 7035 0.696485 GCCCACCCAACCTATCCCTA 60.696 60.000 0.00 0.00 0.00 3.53
6010 7036 2.006991 GCCCACCCAACCTATCCCT 61.007 63.158 0.00 0.00 0.00 4.20
6068 7095 3.491652 GCTGTTCTTCCTCCGCGC 61.492 66.667 0.00 0.00 0.00 6.86
6082 7109 1.202580 CCCCTCTATCTTGAACCGCTG 60.203 57.143 0.00 0.00 0.00 5.18
6117 7144 3.626930 TCTTCTTAGCACCCTCTCTCTC 58.373 50.000 0.00 0.00 0.00 3.20
6128 7155 7.390718 GGAATTACCACTTTCTTCTTCTTAGCA 59.609 37.037 0.00 0.00 38.79 3.49
6146 7173 6.095440 ACTGTTCAGTTGCATATGGAATTACC 59.905 38.462 13.12 0.19 39.54 2.85
6148 7175 6.404623 GCACTGTTCAGTTGCATATGGAATTA 60.405 38.462 13.12 0.00 0.00 1.40
6156 7183 5.089970 AGATAGCACTGTTCAGTTGCATA 57.910 39.130 20.22 13.58 0.00 3.14
6181 7208 4.282195 ACCACTGTCAGTTCTTCTCTTAGG 59.718 45.833 1.67 0.00 0.00 2.69
6182 7209 5.461032 ACCACTGTCAGTTCTTCTCTTAG 57.539 43.478 1.67 0.00 0.00 2.18
6183 7210 5.243283 GGTACCACTGTCAGTTCTTCTCTTA 59.757 44.000 7.15 0.00 0.00 2.10
6184 7211 4.039366 GGTACCACTGTCAGTTCTTCTCTT 59.961 45.833 7.15 0.00 0.00 2.85
6185 7212 3.574826 GGTACCACTGTCAGTTCTTCTCT 59.425 47.826 7.15 0.00 0.00 3.10
6186 7213 3.321111 TGGTACCACTGTCAGTTCTTCTC 59.679 47.826 11.60 0.00 0.00 2.87
6187 7214 3.069729 GTGGTACCACTGTCAGTTCTTCT 59.930 47.826 33.47 0.00 43.12 2.85
6188 7215 3.181469 TGTGGTACCACTGTCAGTTCTTC 60.181 47.826 37.91 13.88 46.30 2.87
6189 7216 2.769663 TGTGGTACCACTGTCAGTTCTT 59.230 45.455 37.91 0.00 46.30 2.52
6190 7217 2.102588 GTGTGGTACCACTGTCAGTTCT 59.897 50.000 37.91 0.00 46.30 3.01
6191 7218 2.159014 TGTGTGGTACCACTGTCAGTTC 60.159 50.000 37.91 20.34 46.30 3.01
6192 7219 1.834896 TGTGTGGTACCACTGTCAGTT 59.165 47.619 37.91 0.00 46.30 3.16
6193 7220 1.412710 CTGTGTGGTACCACTGTCAGT 59.587 52.381 37.91 0.00 46.30 3.41
6194 7221 1.873903 GCTGTGTGGTACCACTGTCAG 60.874 57.143 37.91 35.64 46.30 3.51
6195 7222 0.105964 GCTGTGTGGTACCACTGTCA 59.894 55.000 37.91 30.36 46.30 3.58
6196 7223 0.105964 TGCTGTGTGGTACCACTGTC 59.894 55.000 37.91 28.16 46.30 3.51
6197 7224 0.179056 GTGCTGTGTGGTACCACTGT 60.179 55.000 37.91 0.00 46.30 3.55
6198 7225 0.179059 TGTGCTGTGTGGTACCACTG 60.179 55.000 37.91 28.56 46.30 3.66
6199 7226 0.106708 CTGTGCTGTGTGGTACCACT 59.893 55.000 37.91 0.00 46.30 4.00
6200 7227 1.507141 GCTGTGCTGTGTGGTACCAC 61.507 60.000 33.97 33.97 46.33 4.16
6201 7228 1.227823 GCTGTGCTGTGTGGTACCA 60.228 57.895 11.60 11.60 0.00 3.25
6202 7229 1.966451 GGCTGTGCTGTGTGGTACC 60.966 63.158 4.43 4.43 0.00 3.34
6203 7230 0.606401 ATGGCTGTGCTGTGTGGTAC 60.606 55.000 0.00 0.00 0.00 3.34
6204 7231 0.980423 TATGGCTGTGCTGTGTGGTA 59.020 50.000 0.00 0.00 0.00 3.25
6205 7232 0.606401 GTATGGCTGTGCTGTGTGGT 60.606 55.000 0.00 0.00 0.00 4.16
6206 7233 0.321919 AGTATGGCTGTGCTGTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
6207 7234 1.081892 GAGTATGGCTGTGCTGTGTG 58.918 55.000 0.00 0.00 0.00 3.82
6208 7235 0.686789 TGAGTATGGCTGTGCTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
6209 7236 2.034104 ATGAGTATGGCTGTGCTGTG 57.966 50.000 0.00 0.00 0.00 3.66
6210 7237 2.795231 AATGAGTATGGCTGTGCTGT 57.205 45.000 0.00 0.00 0.00 4.40
6211 7238 3.441222 TGAAAATGAGTATGGCTGTGCTG 59.559 43.478 0.00 0.00 0.00 4.41
6212 7239 3.689347 TGAAAATGAGTATGGCTGTGCT 58.311 40.909 0.00 0.00 0.00 4.40
6213 7240 3.441572 ACTGAAAATGAGTATGGCTGTGC 59.558 43.478 0.00 0.00 0.00 4.57
6214 7241 5.392380 GGAACTGAAAATGAGTATGGCTGTG 60.392 44.000 0.00 0.00 0.00 3.66
6215 7242 4.702131 GGAACTGAAAATGAGTATGGCTGT 59.298 41.667 0.00 0.00 0.00 4.40
6216 7243 4.701651 TGGAACTGAAAATGAGTATGGCTG 59.298 41.667 0.00 0.00 0.00 4.85
6217 7244 4.922206 TGGAACTGAAAATGAGTATGGCT 58.078 39.130 0.00 0.00 0.00 4.75
6218 7245 5.841957 ATGGAACTGAAAATGAGTATGGC 57.158 39.130 0.00 0.00 0.00 4.40
6219 7246 7.636150 AGAATGGAACTGAAAATGAGTATGG 57.364 36.000 0.00 0.00 0.00 2.74
6220 7247 9.388506 AGTAGAATGGAACTGAAAATGAGTATG 57.611 33.333 0.00 0.00 0.00 2.39
6221 7248 9.606631 GAGTAGAATGGAACTGAAAATGAGTAT 57.393 33.333 0.00 0.00 0.00 2.12
6222 7249 8.041323 GGAGTAGAATGGAACTGAAAATGAGTA 58.959 37.037 0.00 0.00 0.00 2.59
6223 7250 6.881602 GGAGTAGAATGGAACTGAAAATGAGT 59.118 38.462 0.00 0.00 0.00 3.41
6224 7251 6.317391 GGGAGTAGAATGGAACTGAAAATGAG 59.683 42.308 0.00 0.00 0.00 2.90
6225 7252 6.012508 AGGGAGTAGAATGGAACTGAAAATGA 60.013 38.462 0.00 0.00 0.00 2.57
6226 7253 6.183347 AGGGAGTAGAATGGAACTGAAAATG 58.817 40.000 0.00 0.00 0.00 2.32
6227 7254 6.394345 AGGGAGTAGAATGGAACTGAAAAT 57.606 37.500 0.00 0.00 0.00 1.82
6228 7255 5.280521 GGAGGGAGTAGAATGGAACTGAAAA 60.281 44.000 0.00 0.00 0.00 2.29
6229 7256 4.225267 GGAGGGAGTAGAATGGAACTGAAA 59.775 45.833 0.00 0.00 0.00 2.69
6230 7257 3.775316 GGAGGGAGTAGAATGGAACTGAA 59.225 47.826 0.00 0.00 0.00 3.02
6231 7258 3.375699 GGAGGGAGTAGAATGGAACTGA 58.624 50.000 0.00 0.00 0.00 3.41
6232 7259 2.101582 CGGAGGGAGTAGAATGGAACTG 59.898 54.545 0.00 0.00 0.00 3.16
6233 7260 2.292323 ACGGAGGGAGTAGAATGGAACT 60.292 50.000 0.00 0.00 0.00 3.01
6234 7261 2.108970 ACGGAGGGAGTAGAATGGAAC 58.891 52.381 0.00 0.00 0.00 3.62
6235 7262 2.544844 ACGGAGGGAGTAGAATGGAA 57.455 50.000 0.00 0.00 0.00 3.53
6236 7263 2.385803 GAACGGAGGGAGTAGAATGGA 58.614 52.381 0.00 0.00 0.00 3.41
6237 7264 1.067212 CGAACGGAGGGAGTAGAATGG 59.933 57.143 0.00 0.00 0.00 3.16
6238 7265 1.067212 CCGAACGGAGGGAGTAGAATG 59.933 57.143 7.53 0.00 37.50 2.67
6239 7266 1.064166 TCCGAACGGAGGGAGTAGAAT 60.064 52.381 12.04 0.00 39.76 2.40
6240 7267 0.329261 TCCGAACGGAGGGAGTAGAA 59.671 55.000 12.04 0.00 39.76 2.10
6241 7268 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
6242 7269 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
6243 7270 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
6244 7271 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
6245 7272 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6246 7273 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6247 7274 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6248 7275 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6249 7276 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
6250 7277 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
6251 7278 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
6252 7279 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
6253 7280 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
6254 7281 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
6255 7282 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
6256 7283 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
6257 7284 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
6258 7285 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
6259 7286 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
6260 7287 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
6261 7288 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
6262 7289 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
6263 7290 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
6264 7291 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
6265 7292 8.350722 GTCTAGATACATCCATTTCTACGACAA 58.649 37.037 0.00 0.00 0.00 3.18
6266 7293 7.307811 CGTCTAGATACATCCATTTCTACGACA 60.308 40.741 0.00 0.00 0.00 4.35
6267 7294 7.016466 CGTCTAGATACATCCATTTCTACGAC 58.984 42.308 0.00 0.00 0.00 4.34
6268 7295 6.709397 ACGTCTAGATACATCCATTTCTACGA 59.291 38.462 0.00 0.00 29.41 3.43
6269 7296 6.797513 CACGTCTAGATACATCCATTTCTACG 59.202 42.308 0.00 0.00 0.00 3.51
6270 7297 7.649973 ACACGTCTAGATACATCCATTTCTAC 58.350 38.462 0.00 0.00 0.00 2.59
6271 7298 7.818997 ACACGTCTAGATACATCCATTTCTA 57.181 36.000 0.00 0.00 0.00 2.10
6272 7299 6.716934 ACACGTCTAGATACATCCATTTCT 57.283 37.500 0.00 0.00 0.00 2.52
6273 7300 7.772332 AAACACGTCTAGATACATCCATTTC 57.228 36.000 0.00 0.00 0.00 2.17
6274 7301 9.314321 CTAAAACACGTCTAGATACATCCATTT 57.686 33.333 0.00 0.00 0.00 2.32
6275 7302 8.475639 ACTAAAACACGTCTAGATACATCCATT 58.524 33.333 0.00 0.00 0.00 3.16
6276 7303 8.008513 ACTAAAACACGTCTAGATACATCCAT 57.991 34.615 0.00 0.00 0.00 3.41
6277 7304 7.400599 ACTAAAACACGTCTAGATACATCCA 57.599 36.000 0.00 0.00 0.00 3.41
6278 7305 8.189460 AGAACTAAAACACGTCTAGATACATCC 58.811 37.037 0.00 0.00 0.00 3.51
6281 7308 9.440773 TCTAGAACTAAAACACGTCTAGATACA 57.559 33.333 0.00 0.00 32.48 2.29
6285 7312 9.440773 TGTATCTAGAACTAAAACACGTCTAGA 57.559 33.333 10.27 10.27 38.94 2.43
6288 7315 8.189460 GGATGTATCTAGAACTAAAACACGTCT 58.811 37.037 0.00 0.00 0.00 4.18
6289 7316 7.972277 TGGATGTATCTAGAACTAAAACACGTC 59.028 37.037 0.00 0.00 0.00 4.34
6290 7317 7.833786 TGGATGTATCTAGAACTAAAACACGT 58.166 34.615 0.00 0.00 0.00 4.49
6291 7318 8.873215 ATGGATGTATCTAGAACTAAAACACG 57.127 34.615 0.00 0.00 0.00 4.49
6295 7322 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
6296 7323 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
6297 7324 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
6298 7325 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
6299 7326 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
6300 7327 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
6301 7328 6.982852 GTCTCGGAAATGGATGTATCTAGAA 58.017 40.000 0.00 0.00 0.00 2.10
6302 7329 6.576662 GTCTCGGAAATGGATGTATCTAGA 57.423 41.667 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.