Multiple sequence alignment - TraesCS1D01G010000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G010000 chr1D 100.000 3266 0 0 3051 6316 5407877 5404612 0.000000e+00 6032.0
1 TraesCS1D01G010000 chr1D 100.000 2800 0 0 1 2800 5410927 5408128 0.000000e+00 5171.0
2 TraesCS1D01G010000 chr1D 100.000 330 0 0 3379 3708 5393405 5393076 1.510000e-170 610.0
3 TraesCS1D01G010000 chr1D 86.292 569 65 8 3235 3797 5354316 5353755 1.950000e-169 606.0
4 TraesCS1D01G010000 chr1D 92.308 325 24 1 933 1257 8181009 8181332 1.600000e-125 460.0
5 TraesCS1D01G010000 chr1D 78.537 629 80 33 940 1544 5013945 5013348 4.650000e-96 363.0
6 TraesCS1D01G010000 chr1D 87.500 168 19 1 5790 5957 3462558 3462723 6.460000e-45 193.0
7 TraesCS1D01G010000 chr1D 83.893 149 13 7 1325 1462 5122021 5121873 1.430000e-26 132.0
8 TraesCS1D01G010000 chr1D 87.356 87 7 2 6088 6174 3463361 3463443 5.210000e-16 97.1
9 TraesCS1D01G010000 chr1D 96.491 57 2 0 5137 5193 5020446 5020390 1.870000e-15 95.3
10 TraesCS1D01G010000 chr1B 85.263 2626 211 61 229 2715 17816547 17813959 0.000000e+00 2543.0
11 TraesCS1D01G010000 chr1B 94.548 1229 47 7 3051 4276 8174045 8172834 0.000000e+00 1881.0
12 TraesCS1D01G010000 chr1B 84.366 2034 181 41 878 2800 8218512 8220519 0.000000e+00 1868.0
13 TraesCS1D01G010000 chr1B 86.474 1767 147 49 3078 4818 17813407 17811707 0.000000e+00 1855.0
14 TraesCS1D01G010000 chr1B 81.818 1144 125 51 3699 4818 8221966 8223050 0.000000e+00 883.0
15 TraesCS1D01G010000 chr1B 84.686 764 97 9 940 1683 7643503 7642740 0.000000e+00 745.0
16 TraesCS1D01G010000 chr1B 83.959 773 99 10 949 1704 629605856 629606620 0.000000e+00 717.0
17 TraesCS1D01G010000 chr1B 83.712 749 60 27 1 713 660485539 660486261 0.000000e+00 651.0
18 TraesCS1D01G010000 chr1B 86.694 496 46 12 5099 5579 8170418 8169928 3.350000e-147 532.0
19 TraesCS1D01G010000 chr1B 88.525 366 34 6 5099 5456 17811311 17810946 2.700000e-118 436.0
20 TraesCS1D01G010000 chr1B 87.143 350 27 6 2469 2800 8174421 8174072 1.280000e-101 381.0
21 TraesCS1D01G010000 chr1B 91.057 246 11 4 3056 3301 8221733 8221967 7.900000e-84 322.0
22 TraesCS1D01G010000 chr1B 83.239 352 50 5 1029 1373 5708925 5709274 1.320000e-81 315.0
23 TraesCS1D01G010000 chr1B 89.700 233 21 3 4586 4818 8171115 8170886 1.720000e-75 294.0
24 TraesCS1D01G010000 chr1B 84.034 238 31 3 3979 4209 8156356 8156119 8.240000e-54 222.0
25 TraesCS1D01G010000 chr1B 87.310 197 15 4 6088 6278 8169462 8169270 3.830000e-52 217.0
26 TraesCS1D01G010000 chr1B 94.203 138 8 0 4339 4476 8171279 8171142 1.780000e-50 211.0
27 TraesCS1D01G010000 chr1B 75.538 372 66 17 5645 6006 7156554 7156198 6.550000e-35 159.0
28 TraesCS1D01G010000 chr1B 75.538 372 66 17 5645 6006 7196477 7196121 6.550000e-35 159.0
29 TraesCS1D01G010000 chr1B 89.524 105 11 0 1705 1809 6401756 6401860 3.970000e-27 134.0
30 TraesCS1D01G010000 chr1B 80.420 143 18 7 1 133 17816811 17816669 4.030000e-17 100.0
31 TraesCS1D01G010000 chr1B 92.308 52 4 0 1 52 8217824 8217875 2.440000e-09 75.0
32 TraesCS1D01G010000 chr1B 89.091 55 6 0 1713 1767 6402312 6402366 1.140000e-07 69.4
33 TraesCS1D01G010000 chr1B 91.111 45 0 3 6276 6316 8169255 8169211 2.460000e-04 58.4
34 TraesCS1D01G010000 chr1A 95.316 1409 36 7 1402 2790 6574267 6572869 0.000000e+00 2209.0
35 TraesCS1D01G010000 chr1A 87.283 1785 150 50 3063 4818 6572534 6570798 0.000000e+00 1967.0
36 TraesCS1D01G010000 chr1A 88.946 1357 92 21 45 1383 6576257 6574941 0.000000e+00 1622.0
37 TraesCS1D01G010000 chr1A 88.606 1255 98 12 203 1437 6636379 6635150 0.000000e+00 1483.0
38 TraesCS1D01G010000 chr1A 93.294 1014 50 9 648 1650 6640820 6639814 0.000000e+00 1480.0
39 TraesCS1D01G010000 chr1A 81.807 830 87 26 1262 2040 6670165 6669349 6.910000e-179 638.0
40 TraesCS1D01G010000 chr1A 88.212 509 47 8 1 508 6641512 6641016 4.220000e-166 595.0
41 TraesCS1D01G010000 chr1A 82.765 586 82 12 309 886 6553535 6552961 7.310000e-139 505.0
42 TraesCS1D01G010000 chr1A 82.594 586 83 12 309 886 6539963 6539389 3.400000e-137 499.0
43 TraesCS1D01G010000 chr1A 84.970 499 60 8 5099 5584 6570425 6569929 5.690000e-135 492.0
44 TraesCS1D01G010000 chr1A 95.789 95 4 0 52 146 6636477 6636383 3.050000e-33 154.0
45 TraesCS1D01G010000 chr1A 80.169 237 13 10 6071 6278 6569482 6569251 5.100000e-31 147.0
46 TraesCS1D01G010000 chr1A 96.226 53 1 1 1 52 6576319 6576267 1.130000e-12 86.1
47 TraesCS1D01G010000 chr1A 100.000 33 0 0 45 77 6636505 6636473 1.900000e-05 62.1
48 TraesCS1D01G010000 chr1A 91.111 45 0 3 6276 6316 6569236 6569192 2.460000e-04 58.4
49 TraesCS1D01G010000 chr4B 83.620 757 65 30 1 722 87231723 87232455 0.000000e+00 656.0
50 TraesCS1D01G010000 chrUn 82.465 576 82 12 309 876 333572688 333572124 2.650000e-133 486.0
51 TraesCS1D01G010000 chrUn 82.548 573 81 12 309 873 333618457 333619018 2.650000e-133 486.0
52 TraesCS1D01G010000 chrUn 82.548 573 81 12 309 873 390382157 390382718 2.650000e-133 486.0
53 TraesCS1D01G010000 chr7A 82.485 491 56 10 1574 2040 692235595 692235111 2.740000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G010000 chr1D 5404612 5410927 6315 True 5601.500000 6032 100.000000 1 6316 2 chr1D.!!$R6 6315
1 TraesCS1D01G010000 chr1D 5353755 5354316 561 True 606.000000 606 86.292000 3235 3797 1 chr1D.!!$R4 562
2 TraesCS1D01G010000 chr1D 5013348 5013945 597 True 363.000000 363 78.537000 940 1544 1 chr1D.!!$R1 604
3 TraesCS1D01G010000 chr1B 17810946 17816811 5865 True 1233.500000 2543 85.170500 1 5456 4 chr1B.!!$R6 5455
4 TraesCS1D01G010000 chr1B 8217824 8223050 5226 False 787.000000 1868 87.387250 1 4818 4 chr1B.!!$F5 4817
5 TraesCS1D01G010000 chr1B 7642740 7643503 763 True 745.000000 745 84.686000 940 1683 1 chr1B.!!$R3 743
6 TraesCS1D01G010000 chr1B 629605856 629606620 764 False 717.000000 717 83.959000 949 1704 1 chr1B.!!$F2 755
7 TraesCS1D01G010000 chr1B 660485539 660486261 722 False 651.000000 651 83.712000 1 713 1 chr1B.!!$F3 712
8 TraesCS1D01G010000 chr1B 8169211 8174421 5210 True 510.628571 1881 90.101286 2469 6316 7 chr1B.!!$R5 3847
9 TraesCS1D01G010000 chr1A 6569192 6576319 7127 True 940.214286 2209 89.145857 1 6316 7 chr1A.!!$R4 6315
10 TraesCS1D01G010000 chr1A 6635150 6641512 6362 True 754.820000 1483 93.180200 1 1650 5 chr1A.!!$R5 1649
11 TraesCS1D01G010000 chr1A 6669349 6670165 816 True 638.000000 638 81.807000 1262 2040 1 chr1A.!!$R3 778
12 TraesCS1D01G010000 chr1A 6552961 6553535 574 True 505.000000 505 82.765000 309 886 1 chr1A.!!$R2 577
13 TraesCS1D01G010000 chr1A 6539389 6539963 574 True 499.000000 499 82.594000 309 886 1 chr1A.!!$R1 577
14 TraesCS1D01G010000 chr4B 87231723 87232455 732 False 656.000000 656 83.620000 1 722 1 chr4B.!!$F1 721
15 TraesCS1D01G010000 chrUn 333572124 333572688 564 True 486.000000 486 82.465000 309 876 1 chrUn.!!$R1 567
16 TraesCS1D01G010000 chrUn 333618457 333619018 561 False 486.000000 486 82.548000 309 873 1 chrUn.!!$F1 564
17 TraesCS1D01G010000 chrUn 390382157 390382718 561 False 486.000000 486 82.548000 309 873 1 chrUn.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 319 0.258484 TGCAGAGAGGAGAGGAGAGG 59.742 60.0 0.00 0.00 0.00 3.69 F
234 320 0.550914 GCAGAGAGGAGAGGAGAGGA 59.449 60.0 0.00 0.00 0.00 3.71 F
1664 2789 0.539438 GGTTTGCACTGGTGGGATCA 60.539 55.0 2.84 0.00 0.00 2.92 F
2510 3708 0.950555 TCTGGTTAACGCTGCAGCAG 60.951 55.0 36.03 28.85 42.21 4.24 F
2792 4008 0.108585 AAAGGCAGAGGTGAAGCGAA 59.891 50.0 0.00 0.00 0.00 4.70 F
3772 6388 0.177373 GATACTCCCGTCCACCCAAC 59.823 60.0 0.00 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 2789 0.606604 AGCCACGACTACGGACAATT 59.393 50.0 0.0 0.0 44.46 2.32 R
1736 2883 5.995282 CGCCTATAGTCCATTGTTAATTCCA 59.005 40.0 0.0 0.0 0.00 3.53 R
2746 3962 0.904865 TGGGCATCGTCTGAAGGTCT 60.905 55.0 0.0 0.0 0.00 3.85 R
3767 6383 1.106944 AGGTTGGTTGCTTCGTTGGG 61.107 55.0 0.0 0.0 0.00 4.12 R
4696 8855 0.109342 CAAGAAGTGCAGACCTGGGT 59.891 55.0 0.0 0.0 0.00 4.51 R
5385 9761 0.110295 TGGCTACTTTTGCTGCCTGA 59.890 50.0 0.0 0.0 45.11 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 249 1.895707 CCATCCAATCTCTGCCCGC 60.896 63.158 0.00 0.00 0.00 6.13
176 255 1.450531 CCAATCTCTGCCCGCCAATC 61.451 60.000 0.00 0.00 0.00 2.67
196 275 1.400846 CAGCGCTCGTTCCTCTAGTAA 59.599 52.381 7.13 0.00 0.00 2.24
201 287 3.718815 GCTCGTTCCTCTAGTAAATGGG 58.281 50.000 0.00 0.00 0.00 4.00
230 316 0.396139 AGCTGCAGAGAGGAGAGGAG 60.396 60.000 20.43 0.00 38.04 3.69
231 317 0.395586 GCTGCAGAGAGGAGAGGAGA 60.396 60.000 20.43 0.00 38.04 3.71
232 318 1.683943 CTGCAGAGAGGAGAGGAGAG 58.316 60.000 8.42 0.00 38.04 3.20
233 319 0.258484 TGCAGAGAGGAGAGGAGAGG 59.742 60.000 0.00 0.00 0.00 3.69
234 320 0.550914 GCAGAGAGGAGAGGAGAGGA 59.449 60.000 0.00 0.00 0.00 3.71
254 340 8.794335 AGAGGAAATTCTTTGTCTGGTATTAC 57.206 34.615 0.00 0.00 0.00 1.89
335 478 2.309755 AGCTGGATTGGTGGAGAAATCA 59.690 45.455 0.00 0.00 35.00 2.57
385 535 4.154918 GGAGGATTAGTGCAGACAACAAAG 59.845 45.833 0.00 0.00 0.00 2.77
450 634 4.100963 TCTGTTTGCAGGTTCAGAGACTAA 59.899 41.667 7.69 0.00 42.78 2.24
453 637 6.530120 TGTTTGCAGGTTCAGAGACTAATTA 58.470 36.000 0.00 0.00 0.00 1.40
455 639 6.360370 TTGCAGGTTCAGAGACTAATTAGT 57.640 37.500 18.05 18.05 39.71 2.24
456 640 5.724328 TGCAGGTTCAGAGACTAATTAGTG 58.276 41.667 22.68 8.51 36.50 2.74
458 642 5.724328 CAGGTTCAGAGACTAATTAGTGCA 58.276 41.667 22.68 0.00 36.50 4.57
489 673 2.169769 TCGGACTTGTGAAGTTCCACTT 59.830 45.455 0.00 0.00 43.03 3.16
497 681 4.072131 TGTGAAGTTCCACTTGATTAGCC 58.928 43.478 0.00 0.00 38.80 3.93
532 879 4.656041 AGTAGTATGTGCGTACGAGTTTC 58.344 43.478 21.65 0.45 0.00 2.78
538 885 3.253827 GCGTACGAGTTTCGCAAAG 57.746 52.632 21.65 0.00 45.12 2.77
551 898 1.879380 TCGCAAAGTTCCAGTGGATTG 59.121 47.619 14.00 15.56 0.00 2.67
611 970 1.910671 TGCCGAATACCCCTAAACTGT 59.089 47.619 0.00 0.00 0.00 3.55
640 1002 6.292150 AGCTTATACTAGGGAATTTCAGTGC 58.708 40.000 0.00 0.00 0.00 4.40
716 1080 7.954788 ACTTTCAAGTCATTCTAGTTCAGTC 57.045 36.000 0.00 0.00 32.86 3.51
722 1086 7.939039 TCAAGTCATTCTAGTTCAGTCCAAATT 59.061 33.333 0.00 0.00 0.00 1.82
723 1087 7.913674 AGTCATTCTAGTTCAGTCCAAATTC 57.086 36.000 0.00 0.00 0.00 2.17
725 1089 5.874810 TCATTCTAGTTCAGTCCAAATTCCG 59.125 40.000 0.00 0.00 0.00 4.30
726 1090 5.477607 TTCTAGTTCAGTCCAAATTCCGA 57.522 39.130 0.00 0.00 0.00 4.55
729 1099 4.086706 AGTTCAGTCCAAATTCCGAGTT 57.913 40.909 0.00 0.00 0.00 3.01
732 1102 4.351874 TCAGTCCAAATTCCGAGTTTCT 57.648 40.909 0.00 0.00 0.00 2.52
982 1392 8.539544 TCATGTCATCTACTTAAATTGGACTGA 58.460 33.333 0.00 0.00 0.00 3.41
1011 1421 2.477825 CACAGAGATATGGCAGAACCG 58.522 52.381 0.00 0.00 43.94 4.44
1074 1484 1.534175 CCACGCTCTCCTAATGACGAC 60.534 57.143 0.00 0.00 0.00 4.34
1180 1592 3.994392 AGTAAATTACACGCTGGTCACTG 59.006 43.478 5.89 0.00 0.00 3.66
1213 1626 2.735134 GTGTGTCAAATAGGTCACCGTC 59.265 50.000 0.00 0.00 0.00 4.79
1291 1707 1.093972 CATGCCGCACCAGATAAACA 58.906 50.000 0.00 0.00 0.00 2.83
1333 1753 1.734163 CTTGTAGCCCCCTTACGTTG 58.266 55.000 0.00 0.00 0.00 4.10
1357 1777 8.511604 TGTCTCTTTCTTCTTTCTCAACATTT 57.488 30.769 0.00 0.00 0.00 2.32
1589 2714 2.634940 GCAGGTAGCAGAGGATGGATTA 59.365 50.000 0.00 0.00 44.79 1.75
1650 2775 3.696045 TGTTGGTATCTCCCATGGTTTG 58.304 45.455 11.73 0.00 33.60 2.93
1664 2789 0.539438 GGTTTGCACTGGTGGGATCA 60.539 55.000 2.84 0.00 0.00 2.92
1732 2879 1.398390 GCTGGAACAAGATTAGGCACG 59.602 52.381 0.00 0.00 38.70 5.34
1736 2883 4.888896 TGGAACAAGATTAGGCACGGAGT 61.889 47.826 0.00 0.00 36.33 3.85
2389 3586 4.348168 ACAGTTATGTCCAGACCTTCAGTT 59.652 41.667 0.00 0.00 32.99 3.16
2418 3616 4.224818 AGCTATCTGATAGGGCATTCTTCC 59.775 45.833 22.53 5.47 33.43 3.46
2510 3708 0.950555 TCTGGTTAACGCTGCAGCAG 60.951 55.000 36.03 28.85 42.21 4.24
2617 3816 6.870769 ACTGGCAAATCATTTTAAGATGGAG 58.129 36.000 6.17 0.00 0.00 3.86
2678 3894 4.527038 AGATTGTCGAAAAGTCCTGGACTA 59.473 41.667 28.55 10.89 42.59 2.59
2743 3959 4.781775 CTAGGTGTTCTAGGGAGAGAGA 57.218 50.000 0.00 0.00 41.30 3.10
2746 3962 3.076182 AGGTGTTCTAGGGAGAGAGACAA 59.924 47.826 0.00 0.00 31.77 3.18
2763 3979 1.338200 ACAAGACCTTCAGACGATGCC 60.338 52.381 0.00 0.00 0.00 4.40
2786 4002 3.788227 ACAACATAAAGGCAGAGGTGA 57.212 42.857 0.00 0.00 0.00 4.02
2792 4008 0.108585 AAAGGCAGAGGTGAAGCGAA 59.891 50.000 0.00 0.00 0.00 4.70
3088 5262 1.168714 GCCCACTGCTAAACTCTTGG 58.831 55.000 0.00 0.00 36.87 3.61
3358 5957 8.576442 TGATAGAGATTTGGAGGTTTTGTTTTC 58.424 33.333 0.00 0.00 0.00 2.29
3728 6340 9.444600 TGTTAATGTAATGGAAGTTAAGAGGTC 57.555 33.333 0.00 0.00 0.00 3.85
3760 6375 6.989169 AGCTAATCAATCTGTTGTGATACTCC 59.011 38.462 0.00 0.00 33.31 3.85
3762 6378 4.123497 TCAATCTGTTGTGATACTCCCG 57.877 45.455 0.00 0.00 36.69 5.14
3763 6379 3.513912 TCAATCTGTTGTGATACTCCCGT 59.486 43.478 0.00 0.00 36.69 5.28
3767 6383 1.274167 TGTTGTGATACTCCCGTCCAC 59.726 52.381 0.00 0.00 0.00 4.02
3772 6388 0.177373 GATACTCCCGTCCACCCAAC 59.823 60.000 0.00 0.00 0.00 3.77
3773 6389 1.610554 ATACTCCCGTCCACCCAACG 61.611 60.000 0.00 0.00 39.78 4.10
3774 6390 2.711883 TACTCCCGTCCACCCAACGA 62.712 60.000 0.00 0.00 42.62 3.85
3775 6391 2.843411 TCCCGTCCACCCAACGAA 60.843 61.111 0.00 0.00 42.62 3.85
3933 6560 9.890629 ATACAGTAGCTCATCTTTTGTTGATAA 57.109 29.630 0.00 0.00 0.00 1.75
4000 6629 9.933723 ACCTATTCGTACTACAAGTTTTAATGT 57.066 29.630 0.00 0.00 0.00 2.71
4020 6649 9.678941 TTAATGTATCTGCTTATCTCTTACACG 57.321 33.333 0.00 0.00 0.00 4.49
4058 6687 1.423584 TCTGCTGTCAGGAGGTCAAA 58.576 50.000 20.01 0.00 40.69 2.69
4075 6704 5.903010 AGGTCAAAGGGTAAAAACCAAGATT 59.097 36.000 0.00 0.00 0.00 2.40
4077 6706 5.465390 GTCAAAGGGTAAAAACCAAGATTGC 59.535 40.000 0.00 0.00 0.00 3.56
4115 6744 5.183904 AGTGGTTTGAGAAATATGTTCTGCC 59.816 40.000 5.29 0.00 0.00 4.85
4215 6845 7.440856 CCTCTGCAGAATTCTATCTTAACCTTC 59.559 40.741 18.85 0.00 0.00 3.46
4252 6885 9.860898 ATCTCATTACCAAATTTTAACTTCTGC 57.139 29.630 0.00 0.00 0.00 4.26
4276 8366 5.107182 CGAAGCTTTGCGATGATCTATCATT 60.107 40.000 0.00 0.00 46.84 2.57
4279 8369 4.453478 GCTTTGCGATGATCTATCATTGGA 59.547 41.667 17.87 13.99 46.84 3.53
4280 8370 5.123502 GCTTTGCGATGATCTATCATTGGAT 59.876 40.000 17.87 0.00 46.84 3.41
4281 8371 6.490566 TTTGCGATGATCTATCATTGGATG 57.509 37.500 17.87 4.80 46.84 3.51
4284 8374 6.700352 TGCGATGATCTATCATTGGATGTTA 58.300 36.000 17.87 0.00 46.84 2.41
4285 8375 6.591448 TGCGATGATCTATCATTGGATGTTAC 59.409 38.462 17.87 4.42 46.84 2.50
4384 8511 5.052481 GGCTTTTCATGTCTTCTGCTTTTT 58.948 37.500 0.00 0.00 0.00 1.94
4463 8590 6.464892 CCTTATTGATGAATGCTGGTCTCCTA 60.465 42.308 0.00 0.00 0.00 2.94
4488 8615 8.469309 AGTAAGTATTTTCCATGGGATCATTG 57.531 34.615 13.02 0.00 0.00 2.82
4501 8628 3.515104 GGGATCATTGTCATGGGTGTTTT 59.485 43.478 0.00 0.00 0.00 2.43
4514 8644 5.860941 TGGGTGTTTTTGTATTCACATGT 57.139 34.783 0.00 0.00 33.76 3.21
4515 8645 6.227298 TGGGTGTTTTTGTATTCACATGTT 57.773 33.333 0.00 0.00 33.76 2.71
4516 8646 6.045318 TGGGTGTTTTTGTATTCACATGTTG 58.955 36.000 0.00 0.00 33.76 3.33
4517 8647 5.465056 GGGTGTTTTTGTATTCACATGTTGG 59.535 40.000 0.00 0.00 33.76 3.77
4518 8648 6.045955 GGTGTTTTTGTATTCACATGTTGGT 58.954 36.000 0.00 0.00 33.76 3.67
4519 8649 6.200097 GGTGTTTTTGTATTCACATGTTGGTC 59.800 38.462 0.00 0.00 33.76 4.02
4520 8650 6.754209 GTGTTTTTGTATTCACATGTTGGTCA 59.246 34.615 0.00 0.00 33.76 4.02
4522 8652 7.984050 TGTTTTTGTATTCACATGTTGGTCATT 59.016 29.630 0.00 0.00 34.09 2.57
4523 8653 8.825745 GTTTTTGTATTCACATGTTGGTCATTT 58.174 29.630 0.00 0.00 34.09 2.32
4524 8654 8.586570 TTTTGTATTCACATGTTGGTCATTTC 57.413 30.769 0.00 0.00 34.09 2.17
4525 8655 7.523293 TTGTATTCACATGTTGGTCATTTCT 57.477 32.000 0.00 0.00 34.09 2.52
4526 8656 7.523293 TGTATTCACATGTTGGTCATTTCTT 57.477 32.000 0.00 0.00 34.09 2.52
4527 8657 8.628630 TGTATTCACATGTTGGTCATTTCTTA 57.371 30.769 0.00 0.00 34.09 2.10
4528 8658 9.072375 TGTATTCACATGTTGGTCATTTCTTAA 57.928 29.630 0.00 0.00 34.09 1.85
4529 8659 9.559958 GTATTCACATGTTGGTCATTTCTTAAG 57.440 33.333 0.00 0.00 34.09 1.85
4530 8660 7.581213 TTCACATGTTGGTCATTTCTTAAGT 57.419 32.000 0.00 0.00 34.09 2.24
4531 8661 8.684386 TTCACATGTTGGTCATTTCTTAAGTA 57.316 30.769 0.00 0.00 34.09 2.24
4532 8662 8.862325 TCACATGTTGGTCATTTCTTAAGTAT 57.138 30.769 0.00 0.00 34.09 2.12
4533 8663 9.295825 TCACATGTTGGTCATTTCTTAAGTATT 57.704 29.630 0.00 0.00 34.09 1.89
4534 8664 9.912634 CACATGTTGGTCATTTCTTAAGTATTT 57.087 29.630 0.00 0.00 34.09 1.40
4538 8668 9.137459 TGTTGGTCATTTCTTAAGTATTTTCCA 57.863 29.630 1.63 4.11 0.00 3.53
4542 8672 8.197439 GGTCATTTCTTAAGTATTTTCCATGGG 58.803 37.037 13.02 0.00 0.00 4.00
4545 8675 9.971922 CATTTCTTAAGTATTTTCCATGGGATC 57.028 33.333 13.02 0.00 0.00 3.36
4547 8677 9.713684 TTTCTTAAGTATTTTCCATGGGATCAT 57.286 29.630 13.02 0.85 0.00 2.45
4566 8699 8.352942 GGGATCATTAGATTCATGTTTACCAAC 58.647 37.037 0.00 0.00 33.72 3.77
4567 8700 8.352942 GGATCATTAGATTCATGTTTACCAACC 58.647 37.037 0.00 0.00 33.72 3.77
4570 8703 9.253832 TCATTAGATTCATGTTTACCAACCAAT 57.746 29.630 0.00 0.00 31.02 3.16
4577 8710 9.816354 ATTCATGTTTACCAACCAATTAATAGC 57.184 29.630 0.00 0.00 31.02 2.97
4579 8712 8.465999 TCATGTTTACCAACCAATTAATAGCTG 58.534 33.333 0.00 0.00 31.02 4.24
4580 8713 6.626302 TGTTTACCAACCAATTAATAGCTGC 58.374 36.000 0.00 0.00 31.02 5.25
4581 8714 6.209589 TGTTTACCAACCAATTAATAGCTGCA 59.790 34.615 1.02 0.00 31.02 4.41
4582 8715 7.093552 TGTTTACCAACCAATTAATAGCTGCAT 60.094 33.333 1.02 0.00 31.02 3.96
4583 8716 5.520376 ACCAACCAATTAATAGCTGCATC 57.480 39.130 1.02 0.00 0.00 3.91
4584 8717 5.203528 ACCAACCAATTAATAGCTGCATCT 58.796 37.500 1.02 0.00 0.00 2.90
4607 8766 1.535028 TCATGCTTACTGTTTGTGCCG 59.465 47.619 0.00 0.00 0.00 5.69
4615 8774 1.748493 ACTGTTTGTGCCGTGTTGATT 59.252 42.857 0.00 0.00 0.00 2.57
4696 8855 3.577805 GCCCTATCTTGAAAGGCCTAA 57.422 47.619 5.16 0.00 37.66 2.69
4724 8883 3.815401 GTCTGCACTTCTTGGCTTTTCTA 59.185 43.478 0.00 0.00 0.00 2.10
4731 8890 6.616017 CACTTCTTGGCTTTTCTATTCCTTC 58.384 40.000 0.00 0.00 0.00 3.46
4742 8901 8.023706 GCTTTTCTATTCCTTCGTTCAAATCTT 58.976 33.333 0.00 0.00 0.00 2.40
4760 8919 8.783093 TCAAATCTTGTGGTGTTAGTTAATCTG 58.217 33.333 0.00 0.00 0.00 2.90
4810 8969 6.930164 ACAGATATAAAGCTGATTCTGCTGAG 59.070 38.462 17.45 5.82 41.85 3.35
4818 8977 4.020751 AGCTGATTCTGCTGAGTGAAGTAA 60.021 41.667 16.22 0.00 37.28 2.24
4819 8978 4.874966 GCTGATTCTGCTGAGTGAAGTAAT 59.125 41.667 8.16 0.00 0.00 1.89
4820 8979 5.006552 GCTGATTCTGCTGAGTGAAGTAATC 59.993 44.000 8.16 0.00 0.00 1.75
4822 8981 7.410120 TGATTCTGCTGAGTGAAGTAATCTA 57.590 36.000 0.00 0.00 0.00 1.98
4823 8982 7.487484 TGATTCTGCTGAGTGAAGTAATCTAG 58.513 38.462 0.00 0.00 0.00 2.43
4824 8983 5.255710 TCTGCTGAGTGAAGTAATCTAGC 57.744 43.478 0.00 0.00 32.23 3.42
4825 8984 4.098654 TCTGCTGAGTGAAGTAATCTAGCC 59.901 45.833 0.00 0.00 31.29 3.93
4828 8987 4.688021 CTGAGTGAAGTAATCTAGCCACC 58.312 47.826 0.00 0.00 0.00 4.61
4829 8988 4.093743 TGAGTGAAGTAATCTAGCCACCA 58.906 43.478 0.00 0.00 0.00 4.17
4830 8989 4.081642 TGAGTGAAGTAATCTAGCCACCAC 60.082 45.833 0.00 0.00 0.00 4.16
4831 8990 4.097418 AGTGAAGTAATCTAGCCACCACT 58.903 43.478 0.00 0.00 0.00 4.00
4832 8991 4.532521 AGTGAAGTAATCTAGCCACCACTT 59.467 41.667 0.00 0.00 0.00 3.16
4833 8992 5.013183 AGTGAAGTAATCTAGCCACCACTTT 59.987 40.000 0.00 0.00 0.00 2.66
4834 8993 6.212791 AGTGAAGTAATCTAGCCACCACTTTA 59.787 38.462 0.00 0.00 0.00 1.85
4835 8994 6.535508 GTGAAGTAATCTAGCCACCACTTTAG 59.464 42.308 0.00 0.00 0.00 1.85
4836 8995 6.212791 TGAAGTAATCTAGCCACCACTTTAGT 59.787 38.462 0.00 0.00 0.00 2.24
4837 8996 5.978814 AGTAATCTAGCCACCACTTTAGTG 58.021 41.667 2.86 2.86 45.23 2.74
4851 9010 5.746990 ACTTTAGTGATTGACTGGCTACT 57.253 39.130 0.00 0.00 35.96 2.57
4852 9011 6.852420 ACTTTAGTGATTGACTGGCTACTA 57.148 37.500 0.00 0.00 35.96 1.82
4854 9013 7.268586 ACTTTAGTGATTGACTGGCTACTATG 58.731 38.462 0.00 0.00 35.96 2.23
4855 9014 7.124298 ACTTTAGTGATTGACTGGCTACTATGA 59.876 37.037 0.00 0.00 35.96 2.15
4856 9015 7.603180 TTAGTGATTGACTGGCTACTATGAT 57.397 36.000 0.00 0.00 35.96 2.45
4859 9018 5.698545 GTGATTGACTGGCTACTATGATTCC 59.301 44.000 0.00 0.00 0.00 3.01
4860 9019 5.366477 TGATTGACTGGCTACTATGATTCCA 59.634 40.000 0.00 0.00 0.00 3.53
4861 9020 5.894298 TTGACTGGCTACTATGATTCCAT 57.106 39.130 0.00 0.00 36.81 3.41
4862 9021 5.474578 TGACTGGCTACTATGATTCCATC 57.525 43.478 0.00 0.00 34.31 3.51
4863 9022 4.284490 TGACTGGCTACTATGATTCCATCC 59.716 45.833 0.00 0.00 34.31 3.51
4864 9023 3.584848 ACTGGCTACTATGATTCCATCCC 59.415 47.826 0.00 0.00 34.31 3.85
4866 9025 3.840666 TGGCTACTATGATTCCATCCCTC 59.159 47.826 0.00 0.00 34.31 4.30
4867 9026 3.198853 GGCTACTATGATTCCATCCCTCC 59.801 52.174 0.00 0.00 34.31 4.30
4868 9027 4.100373 GCTACTATGATTCCATCCCTCCT 58.900 47.826 0.00 0.00 34.31 3.69
4870 9029 4.219392 ACTATGATTCCATCCCTCCTGA 57.781 45.455 0.00 0.00 34.31 3.86
4871 9030 3.906846 ACTATGATTCCATCCCTCCTGAC 59.093 47.826 0.00 0.00 34.31 3.51
4872 9031 2.575921 TGATTCCATCCCTCCTGACT 57.424 50.000 0.00 0.00 0.00 3.41
4873 9032 2.121948 TGATTCCATCCCTCCTGACTG 58.878 52.381 0.00 0.00 0.00 3.51
4875 9034 2.044793 TTCCATCCCTCCTGACTGTT 57.955 50.000 0.00 0.00 0.00 3.16
4877 9036 1.909302 TCCATCCCTCCTGACTGTTTC 59.091 52.381 0.00 0.00 0.00 2.78
4878 9037 1.630369 CCATCCCTCCTGACTGTTTCA 59.370 52.381 0.00 0.00 0.00 2.69
4882 9041 3.251484 TCCCTCCTGACTGTTTCAATCT 58.749 45.455 0.00 0.00 32.21 2.40
4883 9042 3.652869 TCCCTCCTGACTGTTTCAATCTT 59.347 43.478 0.00 0.00 32.21 2.40
4886 9045 5.251764 CCTCCTGACTGTTTCAATCTTCAT 58.748 41.667 0.00 0.00 32.21 2.57
4887 9046 5.709164 CCTCCTGACTGTTTCAATCTTCATT 59.291 40.000 0.00 0.00 32.21 2.57
4890 9049 5.125100 TGACTGTTTCAATCTTCATTGCC 57.875 39.130 0.00 0.00 39.56 4.52
4891 9050 4.828939 TGACTGTTTCAATCTTCATTGCCT 59.171 37.500 0.00 0.00 39.56 4.75
4893 9052 6.072508 TGACTGTTTCAATCTTCATTGCCTAC 60.073 38.462 0.00 0.00 39.56 3.18
4894 9053 5.769662 ACTGTTTCAATCTTCATTGCCTACA 59.230 36.000 0.00 0.00 39.56 2.74
4896 9055 7.611467 ACTGTTTCAATCTTCATTGCCTACATA 59.389 33.333 0.00 0.00 39.56 2.29
4898 9057 8.970020 TGTTTCAATCTTCATTGCCTACATAAT 58.030 29.630 0.00 0.00 39.56 1.28
4906 9065 9.806203 TCTTCATTGCCTACATAATTTTCATTG 57.194 29.630 0.00 0.00 0.00 2.82
4908 9067 9.585099 TTCATTGCCTACATAATTTTCATTGAC 57.415 29.630 0.00 0.00 0.00 3.18
4911 9070 7.333528 TGCCTACATAATTTTCATTGACTCC 57.666 36.000 0.00 0.00 0.00 3.85
4914 9073 7.469181 GCCTACATAATTTTCATTGACTCCTGG 60.469 40.741 0.00 0.00 0.00 4.45
4915 9074 7.557719 CCTACATAATTTTCATTGACTCCTGGT 59.442 37.037 0.00 0.00 0.00 4.00
4926 9094 3.859411 GACTCCTGGTCACTGAACTAG 57.141 52.381 0.00 0.00 43.94 2.57
4928 9096 2.158295 ACTCCTGGTCACTGAACTAGGT 60.158 50.000 13.66 0.00 45.47 3.08
4941 9109 2.386661 ACTAGGTCCATGAACTTGCG 57.613 50.000 0.00 0.00 29.72 4.85
4949 9117 1.135689 CCATGAACTTGCGTAGGTTGC 60.136 52.381 5.59 0.00 0.00 4.17
4966 9303 8.489559 CGTAGGTTGCGCAAATATTTATAGTTA 58.510 33.333 26.87 0.00 0.00 2.24
4992 9329 4.161565 TCCATGTACATACTCTGGAACCAC 59.838 45.833 8.32 0.00 36.49 4.16
4994 9331 2.094390 TGTACATACTCTGGAACCACGC 60.094 50.000 0.00 0.00 0.00 5.34
5006 9343 2.160813 GGAACCACGCACGATGTATTTT 59.839 45.455 0.00 0.00 0.00 1.82
5015 9352 5.007626 ACGCACGATGTATTTTATGAATGCT 59.992 36.000 0.00 0.00 0.00 3.79
5016 9353 5.337773 CGCACGATGTATTTTATGAATGCTG 59.662 40.000 0.00 0.00 0.00 4.41
5021 9358 8.623903 ACGATGTATTTTATGAATGCTGTCATT 58.376 29.630 7.82 0.00 45.04 2.57
5038 9375 9.116067 TGCTGTCATTAGTTTACTTTAGTTTGT 57.884 29.630 0.00 0.00 0.00 2.83
5039 9376 9.946165 GCTGTCATTAGTTTACTTTAGTTTGTT 57.054 29.630 0.00 0.00 0.00 2.83
5066 9403 0.677731 CTTGCATCTGCTTTCCCGGA 60.678 55.000 0.73 0.00 42.66 5.14
5069 9406 0.665298 GCATCTGCTTTCCCGGATTC 59.335 55.000 0.73 0.00 38.21 2.52
5074 9419 2.093447 TCTGCTTTCCCGGATTCTTCTC 60.093 50.000 0.73 0.00 0.00 2.87
5075 9420 1.628340 TGCTTTCCCGGATTCTTCTCA 59.372 47.619 0.73 0.00 0.00 3.27
5082 9427 1.312815 CGGATTCTTCTCAATGGGCC 58.687 55.000 0.00 0.00 0.00 5.80
5083 9428 1.133976 CGGATTCTTCTCAATGGGCCT 60.134 52.381 4.53 0.00 0.00 5.19
5084 9429 2.104792 CGGATTCTTCTCAATGGGCCTA 59.895 50.000 4.53 0.00 0.00 3.93
5085 9430 3.481453 GGATTCTTCTCAATGGGCCTAC 58.519 50.000 4.53 0.00 0.00 3.18
5087 9432 3.634397 TTCTTCTCAATGGGCCTACAG 57.366 47.619 4.53 0.00 0.00 2.74
5090 9435 3.330701 TCTTCTCAATGGGCCTACAGTTT 59.669 43.478 4.53 0.00 0.00 2.66
5091 9436 3.806949 TCTCAATGGGCCTACAGTTTT 57.193 42.857 4.53 0.00 0.00 2.43
5092 9437 3.420893 TCTCAATGGGCCTACAGTTTTG 58.579 45.455 4.53 0.00 0.00 2.44
5093 9438 3.073798 TCTCAATGGGCCTACAGTTTTGA 59.926 43.478 4.53 1.93 0.00 2.69
5094 9439 4.019174 CTCAATGGGCCTACAGTTTTGAT 58.981 43.478 4.53 0.00 0.00 2.57
5095 9440 5.045213 TCTCAATGGGCCTACAGTTTTGATA 60.045 40.000 4.53 0.00 0.00 2.15
5097 9442 5.827797 TCAATGGGCCTACAGTTTTGATATC 59.172 40.000 4.53 0.00 0.00 1.63
5144 9517 2.615747 GGGGAGGAAGGAAGTTCTTTCG 60.616 54.545 18.34 0.00 33.80 3.46
5148 9521 5.489249 GGAGGAAGGAAGTTCTTTCGTTAT 58.511 41.667 19.86 8.20 42.29 1.89
5204 9577 3.150458 TCACTGGAGAAGACGAGGTTA 57.850 47.619 0.00 0.00 0.00 2.85
5207 9580 3.506455 CACTGGAGAAGACGAGGTTAAGA 59.494 47.826 0.00 0.00 0.00 2.10
5261 9634 2.482664 CGATCTGATTGGGTCTGGTCAG 60.483 54.545 0.00 0.00 36.11 3.51
5280 9653 5.107065 GGTCAGATAAAGACGGTTCAAACAG 60.107 44.000 0.00 0.00 36.87 3.16
5318 9691 3.580731 TCGCGTGTCAACAGATTGATAA 58.419 40.909 5.77 0.00 46.43 1.75
5320 9693 4.629634 TCGCGTGTCAACAGATTGATAAAT 59.370 37.500 5.77 0.00 46.43 1.40
5363 9739 5.936956 AGAATCAACAGATTTCGCTTCTTCT 59.063 36.000 0.00 0.00 32.32 2.85
5372 9748 7.768120 ACAGATTTCGCTTCTTCTGATAAGAAT 59.232 33.333 5.84 0.00 38.25 2.40
5374 9750 9.474920 AGATTTCGCTTCTTCTGATAAGAATAG 57.525 33.333 0.00 0.00 35.90 1.73
5375 9751 9.255304 GATTTCGCTTCTTCTGATAAGAATAGT 57.745 33.333 0.00 0.00 35.90 2.12
5384 9760 9.988815 TCTTCTGATAAGAATAGTATTTCCTGC 57.011 33.333 0.00 0.00 0.00 4.85
5385 9761 9.995003 CTTCTGATAAGAATAGTATTTCCTGCT 57.005 33.333 0.00 0.00 0.00 4.24
5387 9763 9.147732 TCTGATAAGAATAGTATTTCCTGCTCA 57.852 33.333 0.00 0.00 0.00 4.26
5388 9764 9.421806 CTGATAAGAATAGTATTTCCTGCTCAG 57.578 37.037 0.00 3.93 0.00 3.35
5460 9841 8.803397 AAGGTCAATTAGTAGGGTGTATTTTC 57.197 34.615 0.00 0.00 0.00 2.29
5461 9842 8.159229 AGGTCAATTAGTAGGGTGTATTTTCT 57.841 34.615 0.00 0.00 0.00 2.52
5462 9843 8.612145 AGGTCAATTAGTAGGGTGTATTTTCTT 58.388 33.333 0.00 0.00 0.00 2.52
5559 9949 3.255642 ACCGAATGAATTGTTTCCTGTGG 59.744 43.478 0.00 0.00 0.00 4.17
5571 9961 0.961019 TCCTGTGGAAAGCATGCAAC 59.039 50.000 21.98 10.22 0.00 4.17
5572 9962 0.675083 CCTGTGGAAAGCATGCAACA 59.325 50.000 21.98 14.04 0.00 3.33
5573 9963 1.274167 CCTGTGGAAAGCATGCAACAT 59.726 47.619 21.98 1.97 0.00 2.71
5574 9964 2.492881 CCTGTGGAAAGCATGCAACATA 59.507 45.455 21.98 9.92 0.00 2.29
5575 9965 3.428452 CCTGTGGAAAGCATGCAACATAG 60.428 47.826 21.98 17.85 0.00 2.23
5577 9967 3.057386 TGTGGAAAGCATGCAACATAGTG 60.057 43.478 21.98 0.00 0.00 2.74
5578 9968 3.057315 GTGGAAAGCATGCAACATAGTGT 60.057 43.478 21.98 0.00 0.00 3.55
5579 9969 3.057386 TGGAAAGCATGCAACATAGTGTG 60.057 43.478 21.98 0.00 0.00 3.82
5580 9970 3.504863 GAAAGCATGCAACATAGTGTGG 58.495 45.455 21.98 0.00 0.00 4.17
5581 9971 2.495155 AGCATGCAACATAGTGTGGA 57.505 45.000 21.98 0.00 0.00 4.02
5583 9973 3.359033 AGCATGCAACATAGTGTGGAAT 58.641 40.909 21.98 0.00 0.00 3.01
5584 9974 3.379372 AGCATGCAACATAGTGTGGAATC 59.621 43.478 21.98 0.00 0.00 2.52
5586 9976 4.497006 GCATGCAACATAGTGTGGAATCTC 60.497 45.833 14.21 0.00 0.00 2.75
5587 9977 3.609853 TGCAACATAGTGTGGAATCTCC 58.390 45.455 0.00 0.00 36.96 3.71
5619 10107 1.967066 TGTAACAAATGGGGCAACTGG 59.033 47.619 0.00 0.00 0.00 4.00
5640 10128 4.612264 GCATTTTTGCCCCAGATGATAT 57.388 40.909 0.00 0.00 0.00 1.63
5641 10129 4.312443 GCATTTTTGCCCCAGATGATATG 58.688 43.478 0.00 0.00 0.00 1.78
5642 10130 4.312443 CATTTTTGCCCCAGATGATATGC 58.688 43.478 0.00 0.00 0.00 3.14
5643 10131 1.608055 TTTGCCCCAGATGATATGCG 58.392 50.000 0.00 0.00 0.00 4.73
5648 10136 2.421107 GCCCCAGATGATATGCGATGAT 60.421 50.000 0.00 0.00 0.00 2.45
5650 10138 3.370209 CCCCAGATGATATGCGATGATGT 60.370 47.826 0.00 0.00 0.00 3.06
5651 10139 4.259356 CCCAGATGATATGCGATGATGTT 58.741 43.478 0.00 0.00 0.00 2.71
5652 10140 4.698780 CCCAGATGATATGCGATGATGTTT 59.301 41.667 0.00 0.00 0.00 2.83
5654 10142 6.036844 CCCAGATGATATGCGATGATGTTTAG 59.963 42.308 0.00 0.00 0.00 1.85
5657 10145 7.544915 CAGATGATATGCGATGATGTTTAGACT 59.455 37.037 0.00 0.00 0.00 3.24
5658 10146 7.544915 AGATGATATGCGATGATGTTTAGACTG 59.455 37.037 0.00 0.00 0.00 3.51
5659 10147 6.515832 TGATATGCGATGATGTTTAGACTGT 58.484 36.000 0.00 0.00 0.00 3.55
5660 10148 6.986231 TGATATGCGATGATGTTTAGACTGTT 59.014 34.615 0.00 0.00 0.00 3.16
5661 10149 8.141268 TGATATGCGATGATGTTTAGACTGTTA 58.859 33.333 0.00 0.00 0.00 2.41
5662 10150 6.834959 ATGCGATGATGTTTAGACTGTTAG 57.165 37.500 0.00 0.00 0.00 2.34
5663 10151 5.720202 TGCGATGATGTTTAGACTGTTAGT 58.280 37.500 0.00 0.00 0.00 2.24
5664 10152 5.576774 TGCGATGATGTTTAGACTGTTAGTG 59.423 40.000 0.00 0.00 0.00 2.74
5667 10155 6.311445 CGATGATGTTTAGACTGTTAGTGCTT 59.689 38.462 0.00 0.00 0.00 3.91
5668 10156 7.148573 CGATGATGTTTAGACTGTTAGTGCTTT 60.149 37.037 0.00 0.00 0.00 3.51
5669 10157 7.189693 TGATGTTTAGACTGTTAGTGCTTTG 57.810 36.000 0.00 0.00 0.00 2.77
5670 10158 5.418310 TGTTTAGACTGTTAGTGCTTTGC 57.582 39.130 0.00 0.00 0.00 3.68
5672 10160 6.285224 TGTTTAGACTGTTAGTGCTTTGCTA 58.715 36.000 0.00 0.00 0.00 3.49
5675 10163 5.215252 AGACTGTTAGTGCTTTGCTAGAA 57.785 39.130 0.00 0.00 0.00 2.10
5678 10166 5.233988 ACTGTTAGTGCTTTGCTAGAAGAG 58.766 41.667 0.00 0.00 0.00 2.85
5679 10167 5.011125 ACTGTTAGTGCTTTGCTAGAAGAGA 59.989 40.000 0.00 0.00 0.00 3.10
5680 10168 5.853936 TGTTAGTGCTTTGCTAGAAGAGAA 58.146 37.500 0.00 0.00 0.00 2.87
5682 10170 4.881019 AGTGCTTTGCTAGAAGAGAAGA 57.119 40.909 0.00 0.00 0.00 2.87
5683 10171 5.419239 AGTGCTTTGCTAGAAGAGAAGAT 57.581 39.130 0.00 0.00 0.00 2.40
5686 10174 6.379703 AGTGCTTTGCTAGAAGAGAAGATCTA 59.620 38.462 0.00 0.00 37.23 1.98
5687 10175 7.038659 GTGCTTTGCTAGAAGAGAAGATCTAA 58.961 38.462 0.00 0.00 37.23 2.10
5688 10176 7.222611 GTGCTTTGCTAGAAGAGAAGATCTAAG 59.777 40.741 0.00 0.00 37.23 2.18
5689 10177 7.123397 TGCTTTGCTAGAAGAGAAGATCTAAGA 59.877 37.037 0.00 0.00 37.23 2.10
5690 10178 7.978975 GCTTTGCTAGAAGAGAAGATCTAAGAA 59.021 37.037 0.00 0.00 37.23 2.52
5691 10179 9.520204 CTTTGCTAGAAGAGAAGATCTAAGAAG 57.480 37.037 0.00 0.00 37.23 2.85
5693 10181 8.450578 TGCTAGAAGAGAAGATCTAAGAAGAG 57.549 38.462 0.00 0.00 37.23 2.85
5694 10182 7.013274 TGCTAGAAGAGAAGATCTAAGAAGAGC 59.987 40.741 0.00 0.00 37.23 4.09
5695 10183 7.013274 GCTAGAAGAGAAGATCTAAGAAGAGCA 59.987 40.741 0.00 0.00 40.75 4.26
5696 10184 7.902920 AGAAGAGAAGATCTAAGAAGAGCAT 57.097 36.000 0.00 0.00 40.75 3.79
5697 10185 8.995027 AGAAGAGAAGATCTAAGAAGAGCATA 57.005 34.615 0.00 0.00 40.75 3.14
5706 10194 9.821240 AGATCTAAGAAGAGCATATAGAAGGAA 57.179 33.333 0.00 0.00 40.75 3.36
5712 10200 8.688747 AGAAGAGCATATAGAAGGAAAAATGG 57.311 34.615 0.00 0.00 0.00 3.16
5713 10201 6.890979 AGAGCATATAGAAGGAAAAATGGC 57.109 37.500 0.00 0.00 0.00 4.40
5714 10202 5.772169 AGAGCATATAGAAGGAAAAATGGCC 59.228 40.000 0.00 0.00 0.00 5.36
5715 10203 5.457686 AGCATATAGAAGGAAAAATGGCCA 58.542 37.500 8.56 8.56 0.00 5.36
5723 10211 7.256494 AGAAGGAAAAATGGCCATTTATTCA 57.744 32.000 35.45 11.43 39.88 2.57
5740 10228 9.146984 CATTTATTCAGAACTGATGTGCATTTT 57.853 29.630 5.34 0.00 39.64 1.82
5741 10229 8.523523 TTTATTCAGAACTGATGTGCATTTTG 57.476 30.769 5.34 0.00 39.64 2.44
5742 10230 5.518848 TTCAGAACTGATGTGCATTTTGT 57.481 34.783 5.34 0.00 39.64 2.83
5743 10231 6.631971 TTCAGAACTGATGTGCATTTTGTA 57.368 33.333 5.34 0.00 39.64 2.41
5744 10232 6.000891 TCAGAACTGATGTGCATTTTGTAC 57.999 37.500 0.00 0.00 34.14 2.90
5746 10234 6.039159 TCAGAACTGATGTGCATTTTGTACAA 59.961 34.615 3.59 3.59 45.54 2.41
5750 10238 5.512753 TGATGTGCATTTTGTACAACAGT 57.487 34.783 8.07 0.00 45.54 3.55
5752 10240 6.667370 TGATGTGCATTTTGTACAACAGTAG 58.333 36.000 8.07 0.00 45.54 2.57
5753 10241 6.262049 TGATGTGCATTTTGTACAACAGTAGT 59.738 34.615 8.07 0.00 45.54 2.73
5756 10244 5.907391 GTGCATTTTGTACAACAGTAGTCAC 59.093 40.000 8.07 6.74 33.03 3.67
5766 10254 7.811236 TGTACAACAGTAGTCACTTGCTATTAC 59.189 37.037 0.00 0.00 30.46 1.89
5767 10255 6.164176 ACAACAGTAGTCACTTGCTATTACC 58.836 40.000 0.00 0.00 30.46 2.85
5769 10257 6.354794 ACAGTAGTCACTTGCTATTACCAA 57.645 37.500 0.00 0.00 30.46 3.67
5771 10259 7.394816 ACAGTAGTCACTTGCTATTACCAATT 58.605 34.615 0.00 0.00 30.46 2.32
5772 10260 7.883311 ACAGTAGTCACTTGCTATTACCAATTT 59.117 33.333 0.00 0.00 30.46 1.82
5774 10262 8.322091 AGTAGTCACTTGCTATTACCAATTTCT 58.678 33.333 0.00 0.00 0.00 2.52
5782 10270 9.643693 CTTGCTATTACCAATTTCTCATTTTGT 57.356 29.630 0.00 0.00 0.00 2.83
5785 10273 7.545265 GCTATTACCAATTTCTCATTTTGTGCA 59.455 33.333 0.00 0.00 0.00 4.57
5787 10275 8.851541 ATTACCAATTTCTCATTTTGTGCATT 57.148 26.923 0.00 0.00 0.00 3.56
5812 10300 6.207417 TGCTTTCTCCAATGTTTTCTTCTAGG 59.793 38.462 0.00 0.00 0.00 3.02
5840 10328 8.843885 TCTTTGCTATGATATTCTGATCTTGG 57.156 34.615 0.00 0.00 0.00 3.61
5850 10338 0.914644 CTGATCTTGGAAGGGAGCCA 59.085 55.000 0.00 0.00 0.00 4.75
5868 10356 5.800438 GGAGCCAAAAACTTAGCTTAAATCG 59.200 40.000 0.00 0.00 35.23 3.34
5872 10360 6.674066 CCAAAAACTTAGCTTAAATCGGTCA 58.326 36.000 0.00 0.00 0.00 4.02
5876 10364 9.758651 AAAAACTTAGCTTAAATCGGTCAATTT 57.241 25.926 0.00 0.00 33.54 1.82
5879 10367 6.657541 ACTTAGCTTAAATCGGTCAATTTCCA 59.342 34.615 0.00 0.00 31.50 3.53
5918 10406 4.087907 TGATTCAAGCAATGGACATGGAA 58.912 39.130 0.00 0.00 0.00 3.53
5944 10432 5.701290 ACTCTTTGTTTCTACTTCCCATTCG 59.299 40.000 0.00 0.00 0.00 3.34
5996 10484 6.927381 ACGTAACATGCATATTAAGGTCTACC 59.073 38.462 13.93 0.00 0.00 3.18
6005 10493 6.428159 GCATATTAAGGTCTACCACATGAAGG 59.572 42.308 0.00 3.24 38.89 3.46
6019 10507 3.650942 ACATGAAGGGTTGGTTACTCTGA 59.349 43.478 0.00 0.00 36.20 3.27
6061 10549 7.923414 AATTTTATGTCTGTGTCTACTTCCC 57.077 36.000 0.00 0.00 0.00 3.97
6062 10550 4.713824 TTATGTCTGTGTCTACTTCCCG 57.286 45.455 0.00 0.00 0.00 5.14
6063 10551 1.991121 TGTCTGTGTCTACTTCCCGT 58.009 50.000 0.00 0.00 0.00 5.28
6064 10552 1.611977 TGTCTGTGTCTACTTCCCGTG 59.388 52.381 0.00 0.00 0.00 4.94
6065 10553 1.884579 GTCTGTGTCTACTTCCCGTGA 59.115 52.381 0.00 0.00 0.00 4.35
6066 10554 2.492484 GTCTGTGTCTACTTCCCGTGAT 59.508 50.000 0.00 0.00 0.00 3.06
6067 10555 2.492088 TCTGTGTCTACTTCCCGTGATG 59.508 50.000 0.00 0.00 0.00 3.07
6068 10556 1.548719 TGTGTCTACTTCCCGTGATGG 59.451 52.381 0.00 0.00 37.55 3.51
6069 10557 1.549170 GTGTCTACTTCCCGTGATGGT 59.451 52.381 0.00 0.00 35.15 3.55
6070 10558 2.756760 GTGTCTACTTCCCGTGATGGTA 59.243 50.000 0.00 0.00 35.15 3.25
6071 10559 3.194116 GTGTCTACTTCCCGTGATGGTAA 59.806 47.826 0.00 0.00 35.15 2.85
6072 10560 3.446161 TGTCTACTTCCCGTGATGGTAAG 59.554 47.826 0.00 0.00 35.15 2.34
6073 10561 3.446516 GTCTACTTCCCGTGATGGTAAGT 59.553 47.826 6.88 6.88 35.15 2.24
6074 10562 4.641989 GTCTACTTCCCGTGATGGTAAGTA 59.358 45.833 8.36 8.36 35.15 2.24
6075 10563 5.126061 GTCTACTTCCCGTGATGGTAAGTAA 59.874 44.000 9.70 0.47 32.57 2.24
6076 10564 4.198028 ACTTCCCGTGATGGTAAGTAAC 57.802 45.455 0.00 0.00 35.15 2.50
6077 10565 3.579586 ACTTCCCGTGATGGTAAGTAACA 59.420 43.478 0.00 0.00 35.15 2.41
6078 10566 4.224370 ACTTCCCGTGATGGTAAGTAACAT 59.776 41.667 0.00 0.00 35.15 2.71
6079 10567 5.422970 ACTTCCCGTGATGGTAAGTAACATA 59.577 40.000 0.00 0.00 35.15 2.29
6080 10568 5.936187 TCCCGTGATGGTAAGTAACATAA 57.064 39.130 0.00 0.00 35.15 1.90
6081 10569 5.663456 TCCCGTGATGGTAAGTAACATAAC 58.337 41.667 0.00 0.00 35.15 1.89
6082 10570 5.187381 TCCCGTGATGGTAAGTAACATAACA 59.813 40.000 4.98 0.00 35.15 2.41
6083 10571 6.053005 CCCGTGATGGTAAGTAACATAACAT 58.947 40.000 4.98 0.00 33.46 2.71
6084 10572 6.018262 CCCGTGATGGTAAGTAACATAACATG 60.018 42.308 4.98 0.00 30.98 3.21
6085 10573 8.327412 CCCGTGATGGTAAGTAACATAACATGT 61.327 40.741 4.98 0.00 40.16 3.21
6086 10574 7.707464 CCGTGATGGTAAGTAACATAACATGTA 59.293 37.037 0.00 0.00 44.07 2.29
6087 10575 9.256477 CGTGATGGTAAGTAACATAACATGTAT 57.744 33.333 0.00 0.00 44.07 2.29
6117 10605 9.531158 ACTACATGAAGGTTAGTTACTTACTCT 57.469 33.333 0.00 0.00 38.33 3.24
6120 10608 9.750783 ACATGAAGGTTAGTTACTTACTCTAGA 57.249 33.333 0.00 0.00 38.33 2.43
6123 10611 9.970553 TGAAGGTTAGTTACTTACTCTAGATCA 57.029 33.333 1.56 0.00 38.33 2.92
6143 10631 8.585471 AGATCATTCATGATTAACCTGTTTGT 57.415 30.769 3.78 0.00 46.84 2.83
6174 10662 4.695217 TTTTGTTCAACCAGTCACTCAC 57.305 40.909 0.00 0.00 0.00 3.51
6229 10735 8.829612 ACATGACATTTCTTTCATTTTGTTTCC 58.170 29.630 0.00 0.00 29.64 3.13
6230 10736 8.828644 CATGACATTTCTTTCATTTTGTTTCCA 58.171 29.630 0.00 0.00 29.64 3.53
6305 11482 5.039920 ACACATATACCATGCTCACACAT 57.960 39.130 0.00 0.00 0.00 3.21
6306 11483 5.439721 ACACATATACCATGCTCACACATT 58.560 37.500 0.00 0.00 0.00 2.71
6309 11486 7.093814 ACACATATACCATGCTCACACATTTTT 60.094 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 249 1.424493 GAGGAACGAGCGCTGATTGG 61.424 60.000 18.48 0.35 0.00 3.16
176 255 1.015109 TACTAGAGGAACGAGCGCTG 58.985 55.000 18.48 10.31 0.00 5.18
196 275 4.784838 TCTGCAGCTATATATCCACCCATT 59.215 41.667 9.47 0.00 0.00 3.16
201 287 4.952957 TCCTCTCTGCAGCTATATATCCAC 59.047 45.833 9.47 0.00 0.00 4.02
230 316 8.794335 AGTAATACCAGACAAAGAATTTCCTC 57.206 34.615 0.00 0.00 35.03 3.71
231 317 9.668497 GTAGTAATACCAGACAAAGAATTTCCT 57.332 33.333 0.00 0.00 35.03 3.36
232 318 9.444600 TGTAGTAATACCAGACAAAGAATTTCC 57.555 33.333 0.00 0.00 35.03 3.13
254 340 7.274686 AGGAACGAACACAAACAAATTTTGTAG 59.725 33.333 14.81 12.67 44.59 2.74
267 356 3.064271 GCAAAGTACAGGAACGAACACAA 59.936 43.478 0.00 0.00 0.00 3.33
269 358 2.032290 GGCAAAGTACAGGAACGAACAC 60.032 50.000 0.00 0.00 0.00 3.32
270 359 2.158871 AGGCAAAGTACAGGAACGAACA 60.159 45.455 0.00 0.00 0.00 3.18
271 360 2.479275 GAGGCAAAGTACAGGAACGAAC 59.521 50.000 0.00 0.00 0.00 3.95
272 361 2.367567 AGAGGCAAAGTACAGGAACGAA 59.632 45.455 0.00 0.00 0.00 3.85
335 478 3.433513 GCCCTACGACGAAGAAATAGT 57.566 47.619 0.00 0.00 0.00 2.12
348 491 4.514577 CTCCACTGCCGCCCTACG 62.515 72.222 0.00 0.00 43.15 3.51
450 634 4.631813 GTCCGAGAAATTGTCTGCACTAAT 59.368 41.667 0.00 0.00 36.41 1.73
453 637 2.037772 AGTCCGAGAAATTGTCTGCACT 59.962 45.455 0.00 0.00 36.41 4.40
455 639 2.807967 CAAGTCCGAGAAATTGTCTGCA 59.192 45.455 0.00 0.00 36.41 4.41
456 640 2.808543 ACAAGTCCGAGAAATTGTCTGC 59.191 45.455 0.00 0.00 36.41 4.26
458 642 4.336889 TCACAAGTCCGAGAAATTGTCT 57.663 40.909 0.00 0.00 40.25 3.41
489 673 5.063204 ACTATTTAATGCGCTGGCTAATCA 58.937 37.500 9.73 0.00 40.82 2.57
497 681 6.299604 GCACATACTACTATTTAATGCGCTG 58.700 40.000 9.73 0.00 0.00 5.18
532 879 1.068333 CCAATCCACTGGAACTTTGCG 60.068 52.381 0.66 0.00 38.96 4.85
538 885 1.963515 ACTTTGCCAATCCACTGGAAC 59.036 47.619 0.66 0.00 38.96 3.62
551 898 2.100197 GGGGGAAACTATCACTTTGCC 58.900 52.381 0.00 0.00 38.15 4.52
611 970 8.792830 TGAAATTCCCTAGTATAAGCTTCCTA 57.207 34.615 0.00 1.16 0.00 2.94
640 1002 1.032014 CACAAGGGGTGGACAAAGTG 58.968 55.000 0.00 0.00 44.04 3.16
716 1080 6.595716 AGATACAGAAGAAACTCGGAATTTGG 59.404 38.462 0.00 0.00 0.00 3.28
755 1125 2.568509 TGGTTTAGGAAACTCGGGGTAG 59.431 50.000 2.39 0.00 43.67 3.18
758 1129 2.801077 ATGGTTTAGGAAACTCGGGG 57.199 50.000 2.39 0.00 43.67 5.73
759 1130 3.442625 GGAAATGGTTTAGGAAACTCGGG 59.557 47.826 2.39 0.00 43.67 5.14
961 1371 9.739276 ATTGTTCAGTCCAATTTAAGTAGATGA 57.261 29.630 0.00 0.00 0.00 2.92
982 1392 3.881688 GCCATATCTCTGTGCTGATTGTT 59.118 43.478 0.00 0.00 0.00 2.83
993 1403 2.477825 CACGGTTCTGCCATATCTCTG 58.522 52.381 0.00 0.00 36.97 3.35
996 1406 0.179045 GCCACGGTTCTGCCATATCT 60.179 55.000 0.00 0.00 36.97 1.98
999 1409 2.270850 GGCCACGGTTCTGCCATA 59.729 61.111 0.00 0.00 44.70 2.74
1011 1421 1.873591 GATGATGAATACGGTGGCCAC 59.126 52.381 28.57 28.57 0.00 5.01
1018 1428 3.922850 CCACGAGATGATGATGAATACGG 59.077 47.826 0.00 0.00 0.00 4.02
1074 1484 1.008538 GCCTTGTGAACTTGTGGCG 60.009 57.895 0.00 0.00 0.00 5.69
1213 1626 7.938140 TGACCTAAATGTGGAAATTAAGAGG 57.062 36.000 0.00 0.00 0.00 3.69
1291 1707 7.425224 AGCATAATTACACTGACTCCTAGTT 57.575 36.000 0.00 0.00 0.00 2.24
1589 2714 2.453521 TCCAGCTACATCAACTACGGT 58.546 47.619 0.00 0.00 0.00 4.83
1650 2775 1.474077 GACAATTGATCCCACCAGTGC 59.526 52.381 13.59 0.00 0.00 4.40
1664 2789 0.606604 AGCCACGACTACGGACAATT 59.393 50.000 0.00 0.00 44.46 2.32
1732 2879 7.661847 CCTATAGTCCATTGTTAATTCCACTCC 59.338 40.741 0.00 0.00 0.00 3.85
1736 2883 5.995282 CGCCTATAGTCCATTGTTAATTCCA 59.005 40.000 0.00 0.00 0.00 3.53
1892 3041 7.809880 AGGTTACTAAACTTATTCTGAGGGT 57.190 36.000 0.00 0.00 35.81 4.34
1893 3042 8.319146 TCAAGGTTACTAAACTTATTCTGAGGG 58.681 37.037 0.00 0.00 35.81 4.30
2241 3409 6.597614 TGAAACTCAAACAATGCAACAAAAC 58.402 32.000 0.00 0.00 0.00 2.43
2284 3457 6.665992 AGTGTCTAGTAGGTTGTTCAATGA 57.334 37.500 0.00 0.00 0.00 2.57
2418 3616 1.469251 CGGGAATACTGTCCAGACACG 60.469 57.143 0.40 0.00 39.70 4.49
2510 3708 1.080298 GCCAACTGTCCAGCAATGC 60.080 57.895 0.00 0.00 0.00 3.56
2678 3894 8.258007 TGGACGAAATTTGTAGAATCACTATCT 58.742 33.333 0.00 0.00 33.39 1.98
2743 3959 1.338200 GGCATCGTCTGAAGGTCTTGT 60.338 52.381 0.00 0.00 0.00 3.16
2746 3962 0.904865 TGGGCATCGTCTGAAGGTCT 60.905 55.000 0.00 0.00 0.00 3.85
2763 3979 3.057315 CACCTCTGCCTTTATGTTGTTGG 60.057 47.826 0.00 0.00 0.00 3.77
3088 5262 4.723248 CGAGGAGGAGCAAACATAAAAAC 58.277 43.478 0.00 0.00 0.00 2.43
3557 6168 6.999272 AGTACTCTGTCTTTCTTCAGTGACTA 59.001 38.462 0.00 0.00 33.89 2.59
3760 6375 3.047877 GCTTCGTTGGGTGGACGG 61.048 66.667 0.00 0.00 40.70 4.79
3762 6378 1.652563 GTTGCTTCGTTGGGTGGAC 59.347 57.895 0.00 0.00 0.00 4.02
3763 6379 1.527380 GGTTGCTTCGTTGGGTGGA 60.527 57.895 0.00 0.00 0.00 4.02
3767 6383 1.106944 AGGTTGGTTGCTTCGTTGGG 61.107 55.000 0.00 0.00 0.00 4.12
3772 6388 1.339631 TGGGATAGGTTGGTTGCTTCG 60.340 52.381 0.00 0.00 0.00 3.79
3773 6389 2.507407 TGGGATAGGTTGGTTGCTTC 57.493 50.000 0.00 0.00 0.00 3.86
3774 6390 4.814224 ATATGGGATAGGTTGGTTGCTT 57.186 40.909 0.00 0.00 0.00 3.91
3775 6391 4.042934 GGTATATGGGATAGGTTGGTTGCT 59.957 45.833 0.00 0.00 0.00 3.91
4000 6629 6.017026 CACTCCGTGTAAGAGATAAGCAGATA 60.017 42.308 0.00 0.00 35.27 1.98
4020 6649 4.348863 AGATTCCATCTGCATACACTCC 57.651 45.455 0.00 0.00 38.44 3.85
4058 6687 4.039124 CACTGCAATCTTGGTTTTTACCCT 59.961 41.667 0.00 0.00 0.00 4.34
4075 6704 2.016318 CCACTCAAACACTTCACTGCA 58.984 47.619 0.00 0.00 0.00 4.41
4077 6706 4.155826 TCAAACCACTCAAACACTTCACTG 59.844 41.667 0.00 0.00 0.00 3.66
4115 6744 7.482654 TCTATGCTAACATCCAATTTCGAAG 57.517 36.000 0.00 0.00 37.74 3.79
4168 6797 6.038997 AGGATCAACACTTAACTCCAGTAC 57.961 41.667 0.00 0.00 0.00 2.73
4177 6807 4.890158 TCTGCAGAGGATCAACACTTAA 57.110 40.909 13.74 0.00 37.82 1.85
4227 6857 8.020819 CGCAGAAGTTAAAATTTGGTAATGAGA 58.979 33.333 0.00 0.00 0.00 3.27
4252 6885 3.737774 TGATAGATCATCGCAAAGCTTCG 59.262 43.478 0.00 0.00 36.33 3.79
4276 8366 4.431416 ACAAAGTGTCAGGTAACATCCA 57.569 40.909 0.00 0.00 41.41 3.41
4279 8369 7.875327 ACTAAAACAAAGTGTCAGGTAACAT 57.125 32.000 0.00 0.00 41.41 2.71
4280 8370 8.967664 ATACTAAAACAAAGTGTCAGGTAACA 57.032 30.769 0.00 0.00 41.41 2.41
4284 8374 8.092687 ACGATATACTAAAACAAAGTGTCAGGT 58.907 33.333 0.00 0.00 0.00 4.00
4285 8375 8.475331 ACGATATACTAAAACAAAGTGTCAGG 57.525 34.615 0.00 0.00 0.00 3.86
4357 8484 5.072741 AGCAGAAGACATGAAAAGCCTTAA 58.927 37.500 0.00 0.00 0.00 1.85
4463 8590 8.061304 ACAATGATCCCATGGAAAATACTTACT 58.939 33.333 15.22 0.00 34.34 2.24
4488 8615 5.837437 TGTGAATACAAAAACACCCATGAC 58.163 37.500 0.00 0.00 32.88 3.06
4501 8628 7.523293 AGAAATGACCAACATGTGAATACAA 57.477 32.000 0.00 0.00 40.84 2.41
4515 8645 8.748412 CCATGGAAAATACTTAAGAAATGACCA 58.252 33.333 5.56 11.60 0.00 4.02
4516 8646 8.197439 CCCATGGAAAATACTTAAGAAATGACC 58.803 37.037 15.22 6.51 0.00 4.02
4517 8647 8.966868 TCCCATGGAAAATACTTAAGAAATGAC 58.033 33.333 15.22 0.00 0.00 3.06
4518 8648 9.713684 ATCCCATGGAAAATACTTAAGAAATGA 57.286 29.630 15.22 0.00 34.34 2.57
4519 8649 9.971922 GATCCCATGGAAAATACTTAAGAAATG 57.028 33.333 15.22 1.47 34.34 2.32
4520 8650 9.713684 TGATCCCATGGAAAATACTTAAGAAAT 57.286 29.630 15.22 0.00 34.34 2.17
4522 8652 9.713684 AATGATCCCATGGAAAATACTTAAGAA 57.286 29.630 15.22 0.00 34.34 2.52
4527 8657 9.887862 AATCTAATGATCCCATGGAAAATACTT 57.112 29.630 15.22 0.42 34.34 2.24
4528 8658 9.525826 GAATCTAATGATCCCATGGAAAATACT 57.474 33.333 15.22 0.00 34.34 2.12
4529 8659 9.300681 TGAATCTAATGATCCCATGGAAAATAC 57.699 33.333 15.22 0.00 34.34 1.89
4531 8661 8.812972 CATGAATCTAATGATCCCATGGAAAAT 58.187 33.333 15.22 3.38 38.52 1.82
4532 8662 7.785985 ACATGAATCTAATGATCCCATGGAAAA 59.214 33.333 15.22 0.00 41.98 2.29
4533 8663 7.299896 ACATGAATCTAATGATCCCATGGAAA 58.700 34.615 15.22 0.35 41.98 3.13
4534 8664 6.855667 ACATGAATCTAATGATCCCATGGAA 58.144 36.000 15.22 0.00 41.98 3.53
4535 8665 6.458630 ACATGAATCTAATGATCCCATGGA 57.541 37.500 15.22 0.00 41.98 3.41
4536 8666 7.534723 AAACATGAATCTAATGATCCCATGG 57.465 36.000 4.14 4.14 41.98 3.66
4537 8667 8.517878 GGTAAACATGAATCTAATGATCCCATG 58.482 37.037 0.00 14.12 42.58 3.66
4538 8668 8.226810 TGGTAAACATGAATCTAATGATCCCAT 58.773 33.333 0.00 0.00 31.51 4.00
4539 8669 7.581814 TGGTAAACATGAATCTAATGATCCCA 58.418 34.615 0.00 0.00 31.51 4.37
4540 8670 8.352942 GTTGGTAAACATGAATCTAATGATCCC 58.647 37.037 0.00 0.00 36.24 3.85
4542 8672 8.902806 TGGTTGGTAAACATGAATCTAATGATC 58.097 33.333 0.00 0.00 38.10 2.92
4545 8675 9.874205 AATTGGTTGGTAAACATGAATCTAATG 57.126 29.630 0.00 0.00 38.10 1.90
4551 8681 9.816354 GCTATTAATTGGTTGGTAAACATGAAT 57.184 29.630 0.00 0.00 38.10 2.57
4566 8699 7.701078 GCATGATTAGATGCAGCTATTAATTGG 59.299 37.037 13.32 1.36 46.77 3.16
4567 8700 8.616377 GCATGATTAGATGCAGCTATTAATTG 57.384 34.615 13.32 8.49 46.77 2.32
4580 8713 6.690098 GCACAAACAGTAAGCATGATTAGATG 59.310 38.462 3.09 8.75 0.00 2.90
4581 8714 6.183360 GGCACAAACAGTAAGCATGATTAGAT 60.183 38.462 3.09 0.00 0.00 1.98
4582 8715 5.123820 GGCACAAACAGTAAGCATGATTAGA 59.876 40.000 3.09 0.00 0.00 2.10
4583 8716 5.335127 GGCACAAACAGTAAGCATGATTAG 58.665 41.667 3.09 0.00 0.00 1.73
4584 8717 4.142708 CGGCACAAACAGTAAGCATGATTA 60.143 41.667 0.00 0.00 0.00 1.75
4615 8774 0.814457 AGTTGGCGTGTCTGCAAAAA 59.186 45.000 0.00 0.00 36.28 1.94
4677 8836 3.435169 GGGTTAGGCCTTTCAAGATAGGG 60.435 52.174 12.58 0.00 37.43 3.53
4696 8855 0.109342 CAAGAAGTGCAGACCTGGGT 59.891 55.000 0.00 0.00 0.00 4.51
4724 8883 4.827284 ACCACAAGATTTGAACGAAGGAAT 59.173 37.500 0.00 0.00 0.00 3.01
4731 8890 5.418310 ACTAACACCACAAGATTTGAACG 57.582 39.130 0.00 0.00 0.00 3.95
4742 8901 7.390440 CCATCTTTCAGATTAACTAACACCACA 59.610 37.037 0.00 0.00 31.32 4.17
4781 8940 9.790344 AGCAGAATCAGCTTTATATCTGTTATT 57.210 29.630 0.00 0.00 39.87 1.40
4782 8941 9.217278 CAGCAGAATCAGCTTTATATCTGTTAT 57.783 33.333 0.00 0.27 41.14 1.89
4783 8942 8.424133 TCAGCAGAATCAGCTTTATATCTGTTA 58.576 33.333 0.00 0.00 41.14 2.41
4784 8943 7.278135 TCAGCAGAATCAGCTTTATATCTGTT 58.722 34.615 0.00 5.08 41.14 3.16
4785 8944 6.824553 TCAGCAGAATCAGCTTTATATCTGT 58.175 36.000 0.00 0.46 41.14 3.41
4786 8945 6.930164 ACTCAGCAGAATCAGCTTTATATCTG 59.070 38.462 0.00 7.17 41.14 2.90
4787 8946 6.930164 CACTCAGCAGAATCAGCTTTATATCT 59.070 38.462 0.00 0.00 41.14 1.98
4801 8960 5.394663 GGCTAGATTACTTCACTCAGCAGAA 60.395 44.000 0.00 0.00 0.00 3.02
4810 8969 4.473477 AGTGGTGGCTAGATTACTTCAC 57.527 45.455 0.00 0.00 0.00 3.18
4818 8977 5.189736 TCAATCACTAAAGTGGTGGCTAGAT 59.810 40.000 10.11 0.00 45.65 1.98
4819 8978 4.530553 TCAATCACTAAAGTGGTGGCTAGA 59.469 41.667 10.11 0.00 45.65 2.43
4820 8979 4.631813 GTCAATCACTAAAGTGGTGGCTAG 59.368 45.833 10.11 0.00 45.65 3.42
4822 8981 3.073062 AGTCAATCACTAAAGTGGTGGCT 59.927 43.478 10.11 11.79 45.65 4.75
4823 8982 3.189287 CAGTCAATCACTAAAGTGGTGGC 59.811 47.826 10.11 9.94 45.65 5.01
4824 8983 3.753272 CCAGTCAATCACTAAAGTGGTGG 59.247 47.826 10.11 0.70 45.65 4.61
4825 8984 3.189287 GCCAGTCAATCACTAAAGTGGTG 59.811 47.826 10.11 8.81 45.65 4.17
4828 8987 5.482908 AGTAGCCAGTCAATCACTAAAGTG 58.517 41.667 3.64 3.64 46.91 3.16
4829 8988 5.746990 AGTAGCCAGTCAATCACTAAAGT 57.253 39.130 0.00 0.00 32.21 2.66
4830 8989 7.492524 TCATAGTAGCCAGTCAATCACTAAAG 58.507 38.462 0.00 0.00 32.21 1.85
4831 8990 7.418337 TCATAGTAGCCAGTCAATCACTAAA 57.582 36.000 0.00 0.00 32.21 1.85
4832 8991 7.603180 ATCATAGTAGCCAGTCAATCACTAA 57.397 36.000 0.00 0.00 32.21 2.24
4833 8992 7.255977 GGAATCATAGTAGCCAGTCAATCACTA 60.256 40.741 0.00 0.00 32.21 2.74
4834 8993 6.463614 GGAATCATAGTAGCCAGTCAATCACT 60.464 42.308 0.00 0.00 34.67 3.41
4835 8994 5.698545 GGAATCATAGTAGCCAGTCAATCAC 59.301 44.000 0.00 0.00 0.00 3.06
4836 8995 5.366477 TGGAATCATAGTAGCCAGTCAATCA 59.634 40.000 0.00 0.00 0.00 2.57
4837 8996 5.858381 TGGAATCATAGTAGCCAGTCAATC 58.142 41.667 0.00 0.00 0.00 2.67
4854 9013 2.122768 ACAGTCAGGAGGGATGGAATC 58.877 52.381 0.00 0.00 44.55 2.52
4855 9014 2.277008 ACAGTCAGGAGGGATGGAAT 57.723 50.000 0.00 0.00 0.00 3.01
4856 9015 2.044793 AACAGTCAGGAGGGATGGAA 57.955 50.000 0.00 0.00 0.00 3.53
4859 9018 3.423539 TTGAAACAGTCAGGAGGGATG 57.576 47.619 0.00 0.00 37.61 3.51
4860 9019 3.848975 AGATTGAAACAGTCAGGAGGGAT 59.151 43.478 0.00 0.00 37.61 3.85
4861 9020 3.251484 AGATTGAAACAGTCAGGAGGGA 58.749 45.455 0.00 0.00 37.61 4.20
4862 9021 3.710209 AGATTGAAACAGTCAGGAGGG 57.290 47.619 0.00 0.00 37.61 4.30
4863 9022 4.645535 TGAAGATTGAAACAGTCAGGAGG 58.354 43.478 0.00 0.00 37.61 4.30
4864 9023 6.609533 CAATGAAGATTGAAACAGTCAGGAG 58.390 40.000 0.00 0.00 41.49 3.69
4866 9025 5.159209 GCAATGAAGATTGAAACAGTCAGG 58.841 41.667 0.00 0.00 41.49 3.86
4867 9026 5.048224 AGGCAATGAAGATTGAAACAGTCAG 60.048 40.000 0.00 0.00 41.49 3.51
4868 9027 4.828939 AGGCAATGAAGATTGAAACAGTCA 59.171 37.500 0.00 0.00 41.49 3.41
4870 9029 5.769662 TGTAGGCAATGAAGATTGAAACAGT 59.230 36.000 0.00 0.00 41.49 3.55
4871 9030 6.258230 TGTAGGCAATGAAGATTGAAACAG 57.742 37.500 0.00 0.00 41.49 3.16
4872 9031 6.839124 ATGTAGGCAATGAAGATTGAAACA 57.161 33.333 0.00 0.00 41.49 2.83
4873 9032 9.807649 AATTATGTAGGCAATGAAGATTGAAAC 57.192 29.630 0.00 0.00 41.49 2.78
4877 9036 9.806203 TGAAAATTATGTAGGCAATGAAGATTG 57.194 29.630 0.00 0.00 41.82 2.67
4882 9041 9.585099 GTCAATGAAAATTATGTAGGCAATGAA 57.415 29.630 0.00 0.00 0.00 2.57
4883 9042 8.970020 AGTCAATGAAAATTATGTAGGCAATGA 58.030 29.630 0.00 0.00 0.00 2.57
4886 9045 7.615365 AGGAGTCAATGAAAATTATGTAGGCAA 59.385 33.333 0.00 0.00 0.00 4.52
4887 9046 7.067372 CAGGAGTCAATGAAAATTATGTAGGCA 59.933 37.037 0.00 0.00 0.00 4.75
4890 9049 8.511604 ACCAGGAGTCAATGAAAATTATGTAG 57.488 34.615 0.00 0.00 0.00 2.74
4891 9050 8.506168 GACCAGGAGTCAATGAAAATTATGTA 57.494 34.615 0.00 0.00 45.55 2.29
4906 9065 2.494073 CCTAGTTCAGTGACCAGGAGTC 59.506 54.545 7.75 0.00 46.51 3.36
4908 9067 2.494073 GACCTAGTTCAGTGACCAGGAG 59.506 54.545 16.96 0.48 33.35 3.69
4911 9070 2.248248 TGGACCTAGTTCAGTGACCAG 58.752 52.381 0.00 0.00 0.00 4.00
4914 9073 4.021016 AGTTCATGGACCTAGTTCAGTGAC 60.021 45.833 0.00 0.00 0.00 3.67
4915 9074 4.160329 AGTTCATGGACCTAGTTCAGTGA 58.840 43.478 0.00 0.00 0.00 3.41
4917 9076 4.804261 GCAAGTTCATGGACCTAGTTCAGT 60.804 45.833 0.00 0.00 0.00 3.41
4918 9077 3.686726 GCAAGTTCATGGACCTAGTTCAG 59.313 47.826 0.00 0.00 0.00 3.02
4919 9078 3.674997 GCAAGTTCATGGACCTAGTTCA 58.325 45.455 0.00 0.00 0.00 3.18
4920 9079 2.673368 CGCAAGTTCATGGACCTAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
4966 9303 6.069673 TGGTTCCAGAGTATGTACATGGATTT 60.070 38.462 18.81 0.00 41.17 2.17
4983 9320 0.389296 TACATCGTGCGTGGTTCCAG 60.389 55.000 0.00 0.00 0.00 3.86
4992 9329 5.337773 CAGCATTCATAAAATACATCGTGCG 59.662 40.000 0.00 0.00 34.33 5.34
4994 9331 7.408910 TGACAGCATTCATAAAATACATCGTG 58.591 34.615 0.00 0.00 0.00 4.35
5038 9375 7.491682 GGGAAAGCAGATGCAAGAATAATAAA 58.508 34.615 7.68 0.00 45.16 1.40
5039 9376 6.238731 CGGGAAAGCAGATGCAAGAATAATAA 60.239 38.462 7.68 0.00 45.16 1.40
5040 9377 5.239306 CGGGAAAGCAGATGCAAGAATAATA 59.761 40.000 7.68 0.00 45.16 0.98
5045 9382 1.167851 CGGGAAAGCAGATGCAAGAA 58.832 50.000 7.68 0.00 45.16 2.52
5054 9391 2.284190 GAGAAGAATCCGGGAAAGCAG 58.716 52.381 0.00 0.00 0.00 4.24
5066 9403 3.525199 ACTGTAGGCCCATTGAGAAGAAT 59.475 43.478 0.00 0.00 0.00 2.40
5069 9406 3.356529 AACTGTAGGCCCATTGAGAAG 57.643 47.619 0.00 0.00 0.00 2.85
5074 9419 5.829924 AGATATCAAAACTGTAGGCCCATTG 59.170 40.000 5.32 0.00 0.00 2.82
5075 9420 6.018433 AGATATCAAAACTGTAGGCCCATT 57.982 37.500 5.32 0.00 0.00 3.16
5084 9429 8.084073 CCACATTTGTCAAGATATCAAAACTGT 58.916 33.333 5.32 0.00 35.28 3.55
5085 9430 8.084073 ACCACATTTGTCAAGATATCAAAACTG 58.916 33.333 5.32 0.00 35.28 3.16
5087 9432 8.816640 AACCACATTTGTCAAGATATCAAAAC 57.183 30.769 5.32 0.27 35.28 2.43
5090 9435 8.685427 CCATAACCACATTTGTCAAGATATCAA 58.315 33.333 5.32 0.00 0.00 2.57
5091 9436 7.833682 ACCATAACCACATTTGTCAAGATATCA 59.166 33.333 5.32 0.00 0.00 2.15
5092 9437 8.131100 CACCATAACCACATTTGTCAAGATATC 58.869 37.037 0.00 0.00 0.00 1.63
5093 9438 7.833682 TCACCATAACCACATTTGTCAAGATAT 59.166 33.333 0.00 0.00 0.00 1.63
5094 9439 7.171653 TCACCATAACCACATTTGTCAAGATA 58.828 34.615 0.00 0.00 0.00 1.98
5095 9440 6.009589 TCACCATAACCACATTTGTCAAGAT 58.990 36.000 0.00 0.00 0.00 2.40
5097 9442 5.702865 CTCACCATAACCACATTTGTCAAG 58.297 41.667 0.00 0.00 0.00 3.02
5144 9517 4.236935 TGTACTTCCGACGGTTCAATAAC 58.763 43.478 14.79 5.31 34.66 1.89
5148 9521 2.546373 CCTTGTACTTCCGACGGTTCAA 60.546 50.000 14.79 11.53 0.00 2.69
5204 9577 4.184629 GCACGTCAAGAGGTGATAATCTT 58.815 43.478 22.68 0.00 46.69 2.40
5207 9580 2.540515 CGCACGTCAAGAGGTGATAAT 58.459 47.619 22.68 0.00 46.69 1.28
5261 9634 3.500680 TGGCTGTTTGAACCGTCTTTATC 59.499 43.478 0.00 0.00 0.00 1.75
5337 9710 6.566197 AGAAGCGAAATCTGTTGATTCTTT 57.434 33.333 0.00 0.00 41.62 2.52
5338 9711 6.429385 AGAAGAAGCGAAATCTGTTGATTCTT 59.571 34.615 5.58 5.58 41.62 2.52
5339 9712 5.936956 AGAAGAAGCGAAATCTGTTGATTCT 59.063 36.000 0.00 0.00 41.62 2.40
5340 9713 6.020372 CAGAAGAAGCGAAATCTGTTGATTC 58.980 40.000 0.00 0.00 41.62 2.52
5341 9714 5.702670 TCAGAAGAAGCGAAATCTGTTGATT 59.297 36.000 10.84 0.00 44.08 2.57
5342 9715 5.240891 TCAGAAGAAGCGAAATCTGTTGAT 58.759 37.500 10.84 0.00 40.11 2.57
5346 9721 6.634805 TCTTATCAGAAGAAGCGAAATCTGT 58.365 36.000 10.84 4.03 40.11 3.41
5384 9760 0.807496 GGCTACTTTTGCTGCCTGAG 59.193 55.000 0.00 0.00 41.92 3.35
5385 9761 0.110295 TGGCTACTTTTGCTGCCTGA 59.890 50.000 0.00 0.00 45.11 3.86
5387 9763 0.401738 TCTGGCTACTTTTGCTGCCT 59.598 50.000 0.00 0.00 45.11 4.75
5388 9764 0.807496 CTCTGGCTACTTTTGCTGCC 59.193 55.000 0.00 0.00 45.10 4.85
5390 9766 5.886960 ATAAACTCTGGCTACTTTTGCTG 57.113 39.130 0.00 0.00 0.00 4.41
5391 9767 6.901081 AAATAAACTCTGGCTACTTTTGCT 57.099 33.333 0.00 0.00 0.00 3.91
5392 9768 9.639601 AATAAAATAAACTCTGGCTACTTTTGC 57.360 29.630 0.00 0.00 0.00 3.68
5402 9780 7.035612 GCAGGAACCAATAAAATAAACTCTGG 58.964 38.462 0.00 0.00 0.00 3.86
5459 9840 9.658799 CAAGAACATAATACCTCTCAGAAAAGA 57.341 33.333 0.00 0.00 0.00 2.52
5460 9841 9.658799 TCAAGAACATAATACCTCTCAGAAAAG 57.341 33.333 0.00 0.00 0.00 2.27
5462 9843 9.823647 GATCAAGAACATAATACCTCTCAGAAA 57.176 33.333 0.00 0.00 0.00 2.52
5527 9916 9.120422 GAAACAATTCATTCGGTACGTAAAATT 57.880 29.630 0.00 0.00 43.74 1.82
5535 9925 5.390613 CACAGGAAACAATTCATTCGGTAC 58.609 41.667 0.00 0.00 37.29 3.34
5540 9930 5.406477 GCTTTCCACAGGAAACAATTCATTC 59.594 40.000 7.11 0.00 45.42 2.67
5545 9935 4.634199 CATGCTTTCCACAGGAAACAATT 58.366 39.130 7.11 0.00 45.42 2.32
5559 9949 3.191162 TCCACACTATGTTGCATGCTTTC 59.809 43.478 20.33 9.58 0.00 2.62
5562 9952 2.495155 TCCACACTATGTTGCATGCT 57.505 45.000 20.33 0.00 0.00 3.79
5590 9980 5.105554 TGCCCCATTTGTTACACATGAATAC 60.106 40.000 12.47 1.26 0.00 1.89
5591 9981 5.019470 TGCCCCATTTGTTACACATGAATA 58.981 37.500 12.47 0.00 0.00 1.75
5592 9982 3.837146 TGCCCCATTTGTTACACATGAAT 59.163 39.130 12.47 0.00 0.00 2.57
5606 10094 1.066471 AAAATGCCAGTTGCCCCATT 58.934 45.000 0.00 0.00 40.16 3.16
5619 10107 2.994186 ATCATCTGGGGCAAAAATGC 57.006 45.000 0.00 0.00 0.00 3.56
5622 10110 2.361757 CGCATATCATCTGGGGCAAAAA 59.638 45.455 0.00 0.00 0.00 1.94
5624 10112 1.142667 TCGCATATCATCTGGGGCAAA 59.857 47.619 0.00 0.00 0.00 3.68
5625 10113 0.764271 TCGCATATCATCTGGGGCAA 59.236 50.000 0.00 0.00 0.00 4.52
5626 10114 0.986527 ATCGCATATCATCTGGGGCA 59.013 50.000 0.00 0.00 0.00 5.36
5628 10116 3.203716 CATCATCGCATATCATCTGGGG 58.796 50.000 0.00 0.00 0.00 4.96
5630 10118 5.874895 AAACATCATCGCATATCATCTGG 57.125 39.130 0.00 0.00 0.00 3.86
5632 10120 7.544915 CAGTCTAAACATCATCGCATATCATCT 59.455 37.037 0.00 0.00 0.00 2.90
5634 10122 7.157347 ACAGTCTAAACATCATCGCATATCAT 58.843 34.615 0.00 0.00 0.00 2.45
5637 10125 8.144478 ACTAACAGTCTAAACATCATCGCATAT 58.856 33.333 0.00 0.00 0.00 1.78
5639 10127 6.256539 CACTAACAGTCTAAACATCATCGCAT 59.743 38.462 0.00 0.00 0.00 4.73
5640 10128 5.576774 CACTAACAGTCTAAACATCATCGCA 59.423 40.000 0.00 0.00 0.00 5.10
5641 10129 5.500931 GCACTAACAGTCTAAACATCATCGC 60.501 44.000 0.00 0.00 0.00 4.58
5642 10130 5.807520 AGCACTAACAGTCTAAACATCATCG 59.192 40.000 0.00 0.00 0.00 3.84
5643 10131 7.602517 AAGCACTAACAGTCTAAACATCATC 57.397 36.000 0.00 0.00 0.00 2.92
5648 10136 5.123227 AGCAAAGCACTAACAGTCTAAACA 58.877 37.500 0.00 0.00 0.00 2.83
5650 10138 6.755206 TCTAGCAAAGCACTAACAGTCTAAA 58.245 36.000 0.00 0.00 0.00 1.85
5651 10139 6.340962 TCTAGCAAAGCACTAACAGTCTAA 57.659 37.500 0.00 0.00 0.00 2.10
5652 10140 5.977489 TCTAGCAAAGCACTAACAGTCTA 57.023 39.130 0.00 0.00 0.00 2.59
5654 10142 5.230942 TCTTCTAGCAAAGCACTAACAGTC 58.769 41.667 0.00 0.00 0.00 3.51
5657 10145 5.468540 TCTCTTCTAGCAAAGCACTAACA 57.531 39.130 0.00 0.00 0.00 2.41
5658 10146 6.159988 TCTTCTCTTCTAGCAAAGCACTAAC 58.840 40.000 0.00 0.00 0.00 2.34
5659 10147 6.346477 TCTTCTCTTCTAGCAAAGCACTAA 57.654 37.500 0.00 0.00 0.00 2.24
5660 10148 5.984695 TCTTCTCTTCTAGCAAAGCACTA 57.015 39.130 0.00 0.00 0.00 2.74
5661 10149 4.881019 TCTTCTCTTCTAGCAAAGCACT 57.119 40.909 0.00 0.00 0.00 4.40
5662 10150 5.418676 AGATCTTCTCTTCTAGCAAAGCAC 58.581 41.667 0.00 0.00 0.00 4.40
5663 10151 5.674052 AGATCTTCTCTTCTAGCAAAGCA 57.326 39.130 0.00 0.00 0.00 3.91
5664 10152 7.488322 TCTTAGATCTTCTCTTCTAGCAAAGC 58.512 38.462 0.00 0.00 35.28 3.51
5667 10155 8.815565 TCTTCTTAGATCTTCTCTTCTAGCAA 57.184 34.615 0.00 0.00 35.28 3.91
5668 10156 7.013274 GCTCTTCTTAGATCTTCTCTTCTAGCA 59.987 40.741 0.00 0.00 35.28 3.49
5669 10157 7.013274 TGCTCTTCTTAGATCTTCTCTTCTAGC 59.987 40.741 0.00 2.37 35.28 3.42
5670 10158 8.450578 TGCTCTTCTTAGATCTTCTCTTCTAG 57.549 38.462 0.00 0.00 35.28 2.43
5672 10160 7.902920 ATGCTCTTCTTAGATCTTCTCTTCT 57.097 36.000 0.00 0.00 35.28 2.85
5679 10167 9.821240 TCCTTCTATATGCTCTTCTTAGATCTT 57.179 33.333 0.00 0.00 0.00 2.40
5680 10168 9.821240 TTCCTTCTATATGCTCTTCTTAGATCT 57.179 33.333 0.00 0.00 0.00 2.75
5686 10174 9.129532 CCATTTTTCCTTCTATATGCTCTTCTT 57.870 33.333 0.00 0.00 0.00 2.52
5687 10175 7.230309 GCCATTTTTCCTTCTATATGCTCTTCT 59.770 37.037 0.00 0.00 0.00 2.85
5688 10176 7.366513 GCCATTTTTCCTTCTATATGCTCTTC 58.633 38.462 0.00 0.00 0.00 2.87
5689 10177 6.266330 GGCCATTTTTCCTTCTATATGCTCTT 59.734 38.462 0.00 0.00 0.00 2.85
5690 10178 5.772169 GGCCATTTTTCCTTCTATATGCTCT 59.228 40.000 0.00 0.00 0.00 4.09
5691 10179 5.536161 TGGCCATTTTTCCTTCTATATGCTC 59.464 40.000 0.00 0.00 0.00 4.26
5693 10181 5.789643 TGGCCATTTTTCCTTCTATATGC 57.210 39.130 0.00 0.00 0.00 3.14
5697 10185 8.991275 TGAATAAATGGCCATTTTTCCTTCTAT 58.009 29.630 40.69 25.52 40.99 1.98
5699 10187 7.180766 TCTGAATAAATGGCCATTTTTCCTTCT 59.819 33.333 40.69 21.87 40.99 2.85
5701 10189 7.256494 TCTGAATAAATGGCCATTTTTCCTT 57.744 32.000 40.69 28.64 40.99 3.36
5702 10190 6.872585 TCTGAATAAATGGCCATTTTTCCT 57.127 33.333 40.69 25.14 40.99 3.36
5703 10191 7.064966 CAGTTCTGAATAAATGGCCATTTTTCC 59.935 37.037 40.69 29.10 40.99 3.13
5704 10192 7.818930 TCAGTTCTGAATAAATGGCCATTTTTC 59.181 33.333 40.69 35.62 40.99 2.29
5706 10194 7.243604 TCAGTTCTGAATAAATGGCCATTTT 57.756 32.000 40.69 27.91 40.99 1.82
5707 10195 6.855763 TCAGTTCTGAATAAATGGCCATTT 57.144 33.333 38.37 38.37 42.95 2.32
5708 10196 6.381994 ACATCAGTTCTGAATAAATGGCCATT 59.618 34.615 25.73 25.73 0.00 3.16
5710 10198 5.125900 CACATCAGTTCTGAATAAATGGCCA 59.874 40.000 8.56 8.56 0.00 5.36
5712 10200 5.039333 GCACATCAGTTCTGAATAAATGGC 58.961 41.667 6.60 3.39 0.00 4.40
5713 10201 6.198650 TGCACATCAGTTCTGAATAAATGG 57.801 37.500 6.60 0.00 0.00 3.16
5714 10202 8.697846 AAATGCACATCAGTTCTGAATAAATG 57.302 30.769 6.60 3.23 0.00 2.32
5715 10203 9.146984 CAAAATGCACATCAGTTCTGAATAAAT 57.853 29.630 6.60 0.00 30.90 1.40
5722 10210 5.761003 TGTACAAAATGCACATCAGTTCTG 58.239 37.500 0.00 0.00 30.90 3.02
5723 10211 6.183360 TGTTGTACAAAATGCACATCAGTTCT 60.183 34.615 10.51 0.00 30.90 3.01
5740 10228 4.665833 AGCAAGTGACTACTGTTGTACA 57.334 40.909 0.00 0.00 37.19 2.90
5741 10229 7.275123 GGTAATAGCAAGTGACTACTGTTGTAC 59.725 40.741 7.49 0.00 37.19 2.90
5742 10230 7.039574 TGGTAATAGCAAGTGACTACTGTTGTA 60.040 37.037 7.49 0.00 37.19 2.41
5743 10231 6.164176 GGTAATAGCAAGTGACTACTGTTGT 58.836 40.000 7.49 0.00 37.19 3.32
5744 10232 6.163476 TGGTAATAGCAAGTGACTACTGTTG 58.837 40.000 7.49 0.00 37.19 3.33
5746 10234 5.995565 TGGTAATAGCAAGTGACTACTGT 57.004 39.130 0.00 0.00 37.19 3.55
5750 10238 8.318412 TGAGAAATTGGTAATAGCAAGTGACTA 58.682 33.333 10.71 0.00 39.11 2.59
5752 10240 7.377766 TGAGAAATTGGTAATAGCAAGTGAC 57.622 36.000 10.71 6.54 39.11 3.67
5753 10241 8.579850 AATGAGAAATTGGTAATAGCAAGTGA 57.420 30.769 10.71 0.00 39.11 3.41
5756 10244 9.643693 ACAAAATGAGAAATTGGTAATAGCAAG 57.356 29.630 10.71 0.00 39.11 4.01
5766 10254 5.180492 AGCAATGCACAAAATGAGAAATTGG 59.820 36.000 8.35 0.00 0.00 3.16
5767 10255 6.236017 AGCAATGCACAAAATGAGAAATTG 57.764 33.333 8.35 0.00 0.00 2.32
5769 10257 6.708949 AGAAAGCAATGCACAAAATGAGAAAT 59.291 30.769 8.35 0.00 0.00 2.17
5771 10259 5.603596 AGAAAGCAATGCACAAAATGAGAA 58.396 33.333 8.35 0.00 0.00 2.87
5772 10260 5.204409 AGAAAGCAATGCACAAAATGAGA 57.796 34.783 8.35 0.00 0.00 3.27
5774 10262 4.202233 TGGAGAAAGCAATGCACAAAATGA 60.202 37.500 8.35 0.00 0.00 2.57
5782 10270 4.339872 AAACATTGGAGAAAGCAATGCA 57.660 36.364 8.35 0.00 39.24 3.96
5785 10273 7.059202 AGAAGAAAACATTGGAGAAAGCAAT 57.941 32.000 0.00 0.00 0.00 3.56
5787 10275 6.207417 CCTAGAAGAAAACATTGGAGAAAGCA 59.793 38.462 0.00 0.00 0.00 3.91
5830 10318 1.207791 GGCTCCCTTCCAAGATCAGA 58.792 55.000 0.00 0.00 0.00 3.27
5840 10328 3.157881 AGCTAAGTTTTTGGCTCCCTTC 58.842 45.455 0.00 0.00 46.78 3.46
5850 10338 9.758651 AAATTGACCGATTTAAGCTAAGTTTTT 57.241 25.926 0.00 0.00 0.00 1.94
5868 10356 8.782339 AAAGATGAATGAAATGGAAATTGACC 57.218 30.769 0.00 0.00 0.00 4.02
5876 10364 8.973182 TGAATCATGAAAGATGAATGAAATGGA 58.027 29.630 0.00 0.00 34.21 3.41
5879 10367 9.314321 GCTTGAATCATGAAAGATGAATGAAAT 57.686 29.630 9.37 0.00 34.21 2.17
5900 10388 3.896888 AGTTTTCCATGTCCATTGCTTGA 59.103 39.130 0.00 0.00 0.00 3.02
5904 10392 4.525912 AAGAGTTTTCCATGTCCATTGC 57.474 40.909 0.00 0.00 0.00 3.56
5931 10419 3.198068 CCATCACACGAATGGGAAGTAG 58.802 50.000 0.00 0.00 43.10 2.57
5941 10429 4.221041 TGGTCATACTTACCATCACACGAA 59.779 41.667 0.00 0.00 42.10 3.85
5967 10455 8.418662 AGACCTTAATATGCATGTTACGTTAGA 58.581 33.333 14.70 0.00 0.00 2.10
5968 10456 8.589335 AGACCTTAATATGCATGTTACGTTAG 57.411 34.615 14.70 9.76 0.00 2.34
5973 10461 7.713507 TGTGGTAGACCTTAATATGCATGTTAC 59.286 37.037 14.70 5.15 36.82 2.50
5990 10478 2.039879 ACCAACCCTTCATGTGGTAGAC 59.960 50.000 1.75 0.00 33.52 2.59
5996 10484 3.753272 CAGAGTAACCAACCCTTCATGTG 59.247 47.826 0.00 0.00 0.00 3.21
6005 10493 6.599244 TCATGAATGATTCAGAGTAACCAACC 59.401 38.462 13.79 0.00 43.98 3.77
6035 10523 9.614792 GGGAAGTAGACACAGACATAAAATTAT 57.385 33.333 0.00 0.00 0.00 1.28
6036 10524 7.762615 CGGGAAGTAGACACAGACATAAAATTA 59.237 37.037 0.00 0.00 0.00 1.40
6037 10525 6.594159 CGGGAAGTAGACACAGACATAAAATT 59.406 38.462 0.00 0.00 0.00 1.82
6038 10526 6.106673 CGGGAAGTAGACACAGACATAAAAT 58.893 40.000 0.00 0.00 0.00 1.82
6039 10527 5.011329 ACGGGAAGTAGACACAGACATAAAA 59.989 40.000 0.00 0.00 0.00 1.52
6040 10528 4.525487 ACGGGAAGTAGACACAGACATAAA 59.475 41.667 0.00 0.00 0.00 1.40
6041 10529 4.082408 CACGGGAAGTAGACACAGACATAA 60.082 45.833 0.00 0.00 0.00 1.90
6042 10530 3.442625 CACGGGAAGTAGACACAGACATA 59.557 47.826 0.00 0.00 0.00 2.29
6043 10531 2.231478 CACGGGAAGTAGACACAGACAT 59.769 50.000 0.00 0.00 0.00 3.06
6044 10532 1.611977 CACGGGAAGTAGACACAGACA 59.388 52.381 0.00 0.00 0.00 3.41
6045 10533 1.884579 TCACGGGAAGTAGACACAGAC 59.115 52.381 0.00 0.00 0.00 3.51
6046 10534 2.281539 TCACGGGAAGTAGACACAGA 57.718 50.000 0.00 0.00 0.00 3.41
6047 10535 2.417379 CCATCACGGGAAGTAGACACAG 60.417 54.545 0.00 0.00 0.00 3.66
6048 10536 1.548719 CCATCACGGGAAGTAGACACA 59.451 52.381 0.00 0.00 0.00 3.72
6049 10537 1.549170 ACCATCACGGGAAGTAGACAC 59.451 52.381 0.00 0.00 40.22 3.67
6050 10538 1.933021 ACCATCACGGGAAGTAGACA 58.067 50.000 0.00 0.00 40.22 3.41
6057 10545 4.829872 ATGTTACTTACCATCACGGGAA 57.170 40.909 0.00 0.00 40.22 3.97
6058 10546 5.187381 TGTTATGTTACTTACCATCACGGGA 59.813 40.000 0.00 0.00 40.22 5.14
6059 10547 5.421277 TGTTATGTTACTTACCATCACGGG 58.579 41.667 0.00 0.00 40.22 5.28
6060 10548 6.537301 ACATGTTATGTTACTTACCATCACGG 59.463 38.462 0.00 0.00 41.63 4.94
6061 10549 7.534085 ACATGTTATGTTACTTACCATCACG 57.466 36.000 0.00 0.00 41.63 4.35
6091 10579 9.531158 AGAGTAAGTAACTAACCTTCATGTAGT 57.469 33.333 0.00 0.00 39.07 2.73
6094 10582 9.750783 TCTAGAGTAAGTAACTAACCTTCATGT 57.249 33.333 0.00 0.00 39.07 3.21
6097 10585 9.970553 TGATCTAGAGTAAGTAACTAACCTTCA 57.029 33.333 0.00 0.00 39.07 3.02
6113 10601 8.932610 ACAGGTTAATCATGAATGATCTAGAGT 58.067 33.333 0.00 0.37 46.22 3.24
6114 10602 9.775854 AACAGGTTAATCATGAATGATCTAGAG 57.224 33.333 0.00 0.00 46.22 2.43
6117 10605 9.685276 ACAAACAGGTTAATCATGAATGATCTA 57.315 29.630 0.00 0.22 46.22 1.98
6118 10606 8.585471 ACAAACAGGTTAATCATGAATGATCT 57.415 30.769 0.00 0.00 46.22 2.75
6119 10607 9.941664 CTACAAACAGGTTAATCATGAATGATC 57.058 33.333 0.00 0.00 46.22 2.92
6121 10609 9.685276 ATCTACAAACAGGTTAATCATGAATGA 57.315 29.630 0.00 0.00 41.70 2.57
6122 10610 9.726232 CATCTACAAACAGGTTAATCATGAATG 57.274 33.333 0.00 0.00 0.00 2.67
6123 10611 8.408601 GCATCTACAAACAGGTTAATCATGAAT 58.591 33.333 0.00 0.00 0.00 2.57
6124 10612 7.392953 TGCATCTACAAACAGGTTAATCATGAA 59.607 33.333 0.00 0.00 0.00 2.57
6125 10613 6.883756 TGCATCTACAAACAGGTTAATCATGA 59.116 34.615 0.00 0.00 0.00 3.07
6126 10614 7.087409 TGCATCTACAAACAGGTTAATCATG 57.913 36.000 0.00 0.00 0.00 3.07
6127 10615 7.701539 TTGCATCTACAAACAGGTTAATCAT 57.298 32.000 0.00 0.00 0.00 2.45
6128 10616 7.701539 ATTGCATCTACAAACAGGTTAATCA 57.298 32.000 0.00 0.00 32.27 2.57
6129 10617 8.986477 AAATTGCATCTACAAACAGGTTAATC 57.014 30.769 0.00 0.00 32.27 1.75
6130 10618 9.777297 AAAAATTGCATCTACAAACAGGTTAAT 57.223 25.926 0.00 0.00 32.27 1.40
6131 10619 9.039870 CAAAAATTGCATCTACAAACAGGTTAA 57.960 29.630 0.00 0.00 32.27 2.01
6132 10620 8.200792 ACAAAAATTGCATCTACAAACAGGTTA 58.799 29.630 0.00 0.00 32.27 2.85
6133 10621 7.047271 ACAAAAATTGCATCTACAAACAGGTT 58.953 30.769 0.00 0.00 32.27 3.50
6143 10631 6.815089 ACTGGTTGAACAAAAATTGCATCTA 58.185 32.000 0.00 0.00 0.00 1.98
6174 10662 3.710209 AGGGAACTCACATCAAAGGAG 57.290 47.619 0.00 0.00 32.90 3.69
6229 10735 4.589216 TTTGGTTTCCAATCTCTTGCTG 57.411 40.909 1.97 0.00 43.55 4.41
6230 10736 6.628844 GCATATTTGGTTTCCAATCTCTTGCT 60.629 38.462 1.97 0.00 43.55 3.91
6251 10757 7.056006 AGTGATGTGACCATTCTAAATGCATA 58.944 34.615 0.00 0.00 0.00 3.14
6258 10770 6.710278 TGAATGAGTGATGTGACCATTCTAA 58.290 36.000 0.00 0.00 41.94 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.