Multiple sequence alignment - TraesCS1D01G009700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G009700 chr1D 100.000 3282 0 0 1 3282 5289664 5292945 0.000000e+00 6061.0
1 TraesCS1D01G009700 chr1D 81.643 621 92 18 2600 3211 486255509 486254902 2.270000e-136 496.0
2 TraesCS1D01G009700 chr1D 79.250 400 66 10 2816 3211 488616386 488616772 2.510000e-66 263.0
3 TraesCS1D01G009700 chr1B 95.497 955 34 4 875 1823 8116585 8117536 0.000000e+00 1517.0
4 TraesCS1D01G009700 chr1B 93.133 830 46 4 1900 2718 8117682 8118511 0.000000e+00 1206.0
5 TraesCS1D01G009700 chr4D 94.044 873 45 4 1 867 232695552 232694681 0.000000e+00 1317.0
6 TraesCS1D01G009700 chr4D 92.792 874 54 5 1 868 461474142 461475012 0.000000e+00 1256.0
7 TraesCS1D01G009700 chr2D 93.578 872 50 2 1 866 306476663 306477534 0.000000e+00 1295.0
8 TraesCS1D01G009700 chr2D 92.395 881 54 7 1 872 346102602 346101726 0.000000e+00 1243.0
9 TraesCS1D01G009700 chr2D 79.268 246 46 5 2578 2821 525519741 525519499 2.030000e-37 167.0
10 TraesCS1D01G009700 chr2D 84.375 96 8 4 1811 1906 636593201 636593113 1.620000e-13 87.9
11 TraesCS1D01G009700 chr7D 93.044 877 53 3 1 870 621971645 621970770 0.000000e+00 1275.0
12 TraesCS1D01G009700 chr2B 93.044 877 51 7 1 869 638015739 638014865 0.000000e+00 1273.0
13 TraesCS1D01G009700 chr2B 84.536 388 51 9 2816 3199 621956990 621957372 3.090000e-100 375.0
14 TraesCS1D01G009700 chr6D 92.922 876 55 2 1 869 191801703 191800828 0.000000e+00 1267.0
15 TraesCS1D01G009700 chr7B 92.808 876 55 3 1 869 267255384 267256258 0.000000e+00 1262.0
16 TraesCS1D01G009700 chr7B 92.580 876 57 4 1 870 168964836 168965709 0.000000e+00 1251.0
17 TraesCS1D01G009700 chr3A 85.075 402 50 8 2816 3211 720412508 720412111 5.100000e-108 401.0
18 TraesCS1D01G009700 chr3A 84.795 171 21 4 3045 3211 468730711 468730880 2.030000e-37 167.0
19 TraesCS1D01G009700 chr4A 84.788 401 52 9 2816 3211 441781522 441781126 8.540000e-106 394.0
20 TraesCS1D01G009700 chr7A 81.572 407 47 13 2808 3211 83300758 83300377 8.840000e-81 311.0
21 TraesCS1D01G009700 chr7A 83.696 92 8 4 1812 1903 678752614 678752698 2.710000e-11 80.5
22 TraesCS1D01G009700 chr1A 81.378 392 57 13 2816 3199 587871958 587872341 4.110000e-79 305.0
23 TraesCS1D01G009700 chr4B 81.963 377 38 16 2816 3188 191211676 191212026 3.200000e-75 292.0
24 TraesCS1D01G009700 chr3D 84.409 186 24 5 3029 3211 350872924 350873107 9.360000e-41 178.0
25 TraesCS1D01G009700 chr3B 85.714 98 10 2 1809 1906 795334321 795334414 2.080000e-17 100.0
26 TraesCS1D01G009700 chr3B 80.208 96 12 3 1811 1906 76514111 76514023 7.600000e-07 65.8
27 TraesCS1D01G009700 chr5A 83.505 97 9 3 1811 1907 32836426 32836515 2.100000e-12 84.2
28 TraesCS1D01G009700 chr5D 83.000 100 8 6 1811 1906 562348446 562348352 7.550000e-12 82.4
29 TraesCS1D01G009700 chr5D 81.818 99 11 3 1812 1910 173749755 173749846 3.510000e-10 76.8
30 TraesCS1D01G009700 chr5B 79.825 114 14 5 1798 1910 324299761 324299866 1.260000e-09 75.0
31 TraesCS1D01G009700 chr6A 95.122 41 2 0 1866 1906 62810623 62810583 7.600000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G009700 chr1D 5289664 5292945 3281 False 6061.0 6061 100.000 1 3282 1 chr1D.!!$F1 3281
1 TraesCS1D01G009700 chr1D 486254902 486255509 607 True 496.0 496 81.643 2600 3211 1 chr1D.!!$R1 611
2 TraesCS1D01G009700 chr1B 8116585 8118511 1926 False 1361.5 1517 94.315 875 2718 2 chr1B.!!$F1 1843
3 TraesCS1D01G009700 chr4D 232694681 232695552 871 True 1317.0 1317 94.044 1 867 1 chr4D.!!$R1 866
4 TraesCS1D01G009700 chr4D 461474142 461475012 870 False 1256.0 1256 92.792 1 868 1 chr4D.!!$F1 867
5 TraesCS1D01G009700 chr2D 306476663 306477534 871 False 1295.0 1295 93.578 1 866 1 chr2D.!!$F1 865
6 TraesCS1D01G009700 chr2D 346101726 346102602 876 True 1243.0 1243 92.395 1 872 1 chr2D.!!$R1 871
7 TraesCS1D01G009700 chr7D 621970770 621971645 875 True 1275.0 1275 93.044 1 870 1 chr7D.!!$R1 869
8 TraesCS1D01G009700 chr2B 638014865 638015739 874 True 1273.0 1273 93.044 1 869 1 chr2B.!!$R1 868
9 TraesCS1D01G009700 chr6D 191800828 191801703 875 True 1267.0 1267 92.922 1 869 1 chr6D.!!$R1 868
10 TraesCS1D01G009700 chr7B 267255384 267256258 874 False 1262.0 1262 92.808 1 869 1 chr7B.!!$F2 868
11 TraesCS1D01G009700 chr7B 168964836 168965709 873 False 1251.0 1251 92.580 1 870 1 chr7B.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 558 0.109643 CGTTGATCCGTACGTGGTCA 60.110 55.0 15.21 14.2 33.33 4.02 F
1330 1347 0.108329 TCGGATTTCACGCCTCCTTC 60.108 55.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1744 0.307760 GGAGACAAACTGCACGTTGG 59.692 55.0 8.95 5.9 35.61 3.77 R
3242 3342 0.104304 ACGATCTCGCGGCCTTATTT 59.896 50.0 6.13 0.0 44.43 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.285083 CCCGATCAATTACGCTGGAAA 58.715 47.619 0.00 0.00 0.00 3.13
79 80 5.105675 GGAAACTTACTAGGTCTGGAGAGTG 60.106 48.000 0.00 0.00 0.00 3.51
107 108 8.820933 ACAGTTAAATCAATGTATCTCGATGTG 58.179 33.333 0.00 0.00 0.00 3.21
161 162 3.601435 TGTTTCGACAGTCAAAGTTCCA 58.399 40.909 0.41 0.00 0.00 3.53
253 254 4.012374 CGTAACTGGACAGGACCTACTAA 58.988 47.826 4.14 0.00 0.00 2.24
263 264 6.014755 GGACAGGACCTACTAAGTGTAGTTTT 60.015 42.308 0.00 0.00 45.36 2.43
309 310 3.882888 ACACCTTTTTCTTGATTGCTCGA 59.117 39.130 0.00 0.00 0.00 4.04
326 327 3.535561 CTCGATGGCCAAAGTTCTATGT 58.464 45.455 10.96 0.00 0.00 2.29
348 349 2.359900 GGACAGTCCACATAGCCTTTG 58.640 52.381 15.43 0.00 36.28 2.77
366 372 4.275936 CCTTTGACATTTCCGAGTTCTGTT 59.724 41.667 0.00 0.00 0.00 3.16
545 551 1.693083 GCCACTGCGTTGATCCGTAC 61.693 60.000 0.00 0.00 0.00 3.67
552 558 0.109643 CGTTGATCCGTACGTGGTCA 60.110 55.000 15.21 14.20 33.33 4.02
641 647 3.680475 CGGGATATCTTCAACCGGTTTGA 60.680 47.826 19.55 16.31 42.83 2.69
694 700 8.882415 TTAGTTTACCTATCTTTCTTATGCCG 57.118 34.615 0.00 0.00 0.00 5.69
699 705 0.468226 ATCTTTCTTATGCCGGCCGA 59.532 50.000 30.73 8.21 0.00 5.54
800 811 7.597288 AGACCTTGTTAAACCTATTTGCTTT 57.403 32.000 0.00 0.00 0.00 3.51
902 913 6.000891 TCTTGTATTCTTGTGTGACAATGC 57.999 37.500 0.00 0.00 37.48 3.56
906 917 2.524569 TCTTGTGTGACAATGCTCGA 57.475 45.000 0.00 0.00 37.48 4.04
908 919 2.802247 TCTTGTGTGACAATGCTCGAAG 59.198 45.455 0.00 0.00 37.48 3.79
929 940 6.463897 CGAAGAATATAAAAGGGCTAGGTGGA 60.464 42.308 0.00 0.00 0.00 4.02
944 960 1.202770 GGTGGAAAGACCCCCATATCG 60.203 57.143 0.00 0.00 38.00 2.92
949 965 3.630769 GGAAAGACCCCCATATCGAAAAC 59.369 47.826 0.00 0.00 0.00 2.43
956 972 3.434453 CCCCCATATCGAAAACTTGCCTA 60.434 47.826 0.00 0.00 0.00 3.93
957 973 3.564225 CCCCATATCGAAAACTTGCCTAC 59.436 47.826 0.00 0.00 0.00 3.18
967 983 4.347360 AAACTTGCCTACCTACGAGTTT 57.653 40.909 3.15 3.15 42.84 2.66
975 992 5.887598 TGCCTACCTACGAGTTTTATAGACA 59.112 40.000 0.00 0.00 0.00 3.41
984 1001 5.038033 CGAGTTTTATAGACACAGAGCCTC 58.962 45.833 0.00 0.00 0.00 4.70
1009 1026 3.898123 TGGATTGTACTAGATGGAGCCTC 59.102 47.826 0.00 0.00 0.00 4.70
1098 1115 2.771943 CCACTCCCTAGCCTACATCAAA 59.228 50.000 0.00 0.00 0.00 2.69
1110 1127 3.681897 CCTACATCAAATCTATGGCGCTC 59.318 47.826 7.64 0.00 0.00 5.03
1129 1146 2.280797 GTGCCGCCACAGAACTCA 60.281 61.111 0.00 0.00 41.67 3.41
1330 1347 0.108329 TCGGATTTCACGCCTCCTTC 60.108 55.000 0.00 0.00 0.00 3.46
1395 1412 1.040646 TCAGCGAGGTCAGTTTCACT 58.959 50.000 0.00 0.00 0.00 3.41
1497 1514 0.698818 ATGGGTTGTGGGAGAAGGAC 59.301 55.000 0.00 0.00 0.00 3.85
1531 1548 1.133976 CCCCCTTCTACTCAGCAATGG 60.134 57.143 0.00 0.00 0.00 3.16
1596 1613 1.961277 CAGCGTCTTTGAGGCCGTT 60.961 57.895 0.00 0.00 43.36 4.44
1710 1727 2.267961 CTCCCCAACGTGGTAGCC 59.732 66.667 0.00 0.00 35.17 3.93
1740 1757 0.963355 ACACCACCAACGTGCAGTTT 60.963 50.000 0.00 0.00 42.02 2.66
1799 1816 1.200716 TGCCGTTCTACTCAAGGTACG 59.799 52.381 0.00 0.00 35.07 3.67
1802 1819 3.729163 GCCGTTCTACTCAAGGTACGTAC 60.729 52.174 17.56 17.56 34.13 3.67
1803 1820 3.686726 CCGTTCTACTCAAGGTACGTACT 59.313 47.826 24.07 8.57 34.13 2.73
1808 1825 7.413438 CGTTCTACTCAAGGTACGTACTTACAT 60.413 40.741 24.07 9.35 32.49 2.29
1809 1826 8.883731 GTTCTACTCAAGGTACGTACTTACATA 58.116 37.037 24.07 9.92 0.00 2.29
1810 1827 8.654230 TCTACTCAAGGTACGTACTTACATAG 57.346 38.462 24.07 17.29 0.00 2.23
1823 1840 5.636903 ACTTACATAGTACTCCCTCCGTA 57.363 43.478 0.00 0.00 34.56 4.02
1824 1841 6.006275 ACTTACATAGTACTCCCTCCGTAA 57.994 41.667 0.00 0.00 34.56 3.18
1825 1842 6.060788 ACTTACATAGTACTCCCTCCGTAAG 58.939 44.000 0.00 10.64 40.09 2.34
1876 1950 8.856490 ATTATTTTAGTGATTGATCCAAACGC 57.144 30.769 0.00 0.00 0.00 4.84
1878 1952 4.678509 TTAGTGATTGATCCAAACGCAC 57.321 40.909 0.00 0.00 30.86 5.34
1880 1954 3.149196 AGTGATTGATCCAAACGCACTT 58.851 40.909 0.00 0.00 33.76 3.16
1883 1957 6.112734 AGTGATTGATCCAAACGCACTTATA 58.887 36.000 0.00 0.00 33.76 0.98
1887 1961 8.128582 TGATTGATCCAAACGCACTTATATTTC 58.871 33.333 0.00 0.00 0.00 2.17
1890 1964 8.050778 TGATCCAAACGCACTTATATTTCTTT 57.949 30.769 0.00 0.00 0.00 2.52
1891 1965 9.168451 TGATCCAAACGCACTTATATTTCTTTA 57.832 29.630 0.00 0.00 0.00 1.85
1892 1966 9.434559 GATCCAAACGCACTTATATTTCTTTAC 57.565 33.333 0.00 0.00 0.00 2.01
1894 1968 8.447833 TCCAAACGCACTTATATTTCTTTACAG 58.552 33.333 0.00 0.00 0.00 2.74
1895 1969 8.447833 CCAAACGCACTTATATTTCTTTACAGA 58.552 33.333 0.00 0.00 0.00 3.41
1897 1971 7.772332 ACGCACTTATATTTCTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
1904 1990 9.699703 CTTATATTTCTTTACAGAGGGAGTAGC 57.300 37.037 0.00 0.00 0.00 3.58
1936 2022 4.525996 TGCAGCAAGCTATCCATTTCTTA 58.474 39.130 0.00 0.00 45.94 2.10
1974 2060 6.730507 ACCAAATTAATCAACCAATCCTTCCT 59.269 34.615 0.00 0.00 0.00 3.36
2054 2140 0.747283 CAAGTGCAGAGAGGCCATCC 60.747 60.000 5.01 0.00 0.00 3.51
2055 2141 2.202987 GTGCAGAGAGGCCATCCG 60.203 66.667 5.01 0.00 37.47 4.18
2115 2201 1.300620 TCGTCGGTGCTGGTTCTTG 60.301 57.895 0.00 0.00 0.00 3.02
2224 2310 8.414629 AGATTTTCTTTGAAGCTGGATTTAGT 57.585 30.769 0.00 0.00 0.00 2.24
2286 2372 8.057623 ACTCATTCAAGTATTCCCATGAATTCT 58.942 33.333 7.05 0.00 39.74 2.40
2289 2375 4.889409 TCAAGTATTCCCATGAATTCTGGC 59.111 41.667 14.89 5.10 41.44 4.85
2295 2381 1.135024 CCCATGAATTCTGGCGGTTTG 60.135 52.381 14.89 1.84 32.08 2.93
2296 2382 1.818060 CCATGAATTCTGGCGGTTTGA 59.182 47.619 7.05 0.00 0.00 2.69
2314 2400 5.476945 GGTTTGATGTCCAAATGTACTTCCT 59.523 40.000 0.00 0.00 45.48 3.36
2315 2401 6.381801 GTTTGATGTCCAAATGTACTTCCTG 58.618 40.000 0.00 0.00 45.48 3.86
2330 2416 5.675684 ACTTCCTGTTTCCAAATGTTTGT 57.324 34.783 4.92 0.00 36.45 2.83
2339 2425 6.205464 TGTTTCCAAATGTTTGTTTGCTTTCA 59.795 30.769 4.92 0.00 37.67 2.69
2340 2426 5.793026 TCCAAATGTTTGTTTGCTTTCAC 57.207 34.783 4.92 0.00 37.67 3.18
2344 2430 6.183360 CCAAATGTTTGTTTGCTTTCACATCA 60.183 34.615 4.92 0.00 37.67 3.07
2427 2513 5.579384 TGTTATCCTACGTGTTGTTTTCG 57.421 39.130 0.00 0.00 0.00 3.46
2447 2533 8.947940 GTTTTCGTTCATAATTCATATGCTCAC 58.052 33.333 0.00 0.00 41.08 3.51
2451 2537 8.284693 TCGTTCATAATTCATATGCTCACAATG 58.715 33.333 0.00 0.00 41.08 2.82
2460 2546 8.510243 TTCATATGCTCACAATGAAATACAGT 57.490 30.769 0.00 0.00 36.85 3.55
2564 2650 3.640200 TATTCGCCGCCCTAGGAATGC 62.640 57.143 11.48 8.31 31.95 3.56
2576 2662 2.476320 GGAATGCGAGCTCCTTGCC 61.476 63.158 8.47 3.92 44.23 4.52
2592 2688 5.253330 TCCTTGCCGAAATGAAATTCTAGT 58.747 37.500 0.00 0.00 33.67 2.57
2593 2689 6.411376 TCCTTGCCGAAATGAAATTCTAGTA 58.589 36.000 0.00 0.00 33.67 1.82
2612 2708 1.861982 AGCACTGGTTACTATCGGGT 58.138 50.000 0.00 0.00 0.00 5.28
2613 2709 1.755380 AGCACTGGTTACTATCGGGTC 59.245 52.381 0.00 0.00 0.00 4.46
2629 2726 1.453155 GGTCCTGCATGTTCGTCATT 58.547 50.000 0.00 0.00 34.09 2.57
2640 2737 4.884458 TGTTCGTCATTTGTGCAAGTAA 57.116 36.364 0.00 0.00 0.00 2.24
2671 2768 6.495706 TGCATACGAGTACTCTACTGAATTG 58.504 40.000 20.34 4.39 39.59 2.32
2676 2773 7.216973 ACGAGTACTCTACTGAATTGAACTT 57.783 36.000 20.34 0.00 39.59 2.66
2754 2851 8.845227 TGCACACAGACTATTTTATTCTTTCAA 58.155 29.630 0.00 0.00 0.00 2.69
2770 2867 5.253330 TCTTTCAACCCATAGTTCATCCAC 58.747 41.667 0.00 0.00 36.18 4.02
2774 2871 1.564348 ACCCATAGTTCATCCACCCAC 59.436 52.381 0.00 0.00 0.00 4.61
2776 2873 2.643551 CCATAGTTCATCCACCCACAC 58.356 52.381 0.00 0.00 0.00 3.82
2847 2944 9.883142 TTGTTCTGAACAAGTAAAATTCCAAAT 57.117 25.926 27.14 0.00 45.79 2.32
2848 2945 9.883142 TGTTCTGAACAAGTAAAATTCCAAATT 57.117 25.926 20.14 0.00 38.72 1.82
2854 2951 9.914923 GAACAAGTAAAATTCCAAATTTGACAC 57.085 29.630 19.86 6.27 0.00 3.67
2855 2952 8.432110 ACAAGTAAAATTCCAAATTTGACACC 57.568 30.769 19.86 0.00 0.00 4.16
2856 2953 8.043710 ACAAGTAAAATTCCAAATTTGACACCA 58.956 29.630 19.86 0.00 0.00 4.17
2857 2954 9.054922 CAAGTAAAATTCCAAATTTGACACCAT 57.945 29.630 19.86 4.52 0.00 3.55
2867 2964 8.428063 TCCAAATTTGACACCATAATGAAACTT 58.572 29.630 19.86 0.00 0.00 2.66
2986 3086 9.778993 CAAATTTGAGATGAAACATAGACGAAT 57.221 29.630 13.08 0.00 0.00 3.34
2988 3088 9.778993 AATTTGAGATGAAACATAGACGAATTG 57.221 29.630 0.00 0.00 0.00 2.32
2993 3093 7.050377 AGATGAAACATAGACGAATTGTGGAT 58.950 34.615 0.00 0.00 0.00 3.41
3007 3107 6.799441 CGAATTGTGGATTGAAACAATAACGA 59.201 34.615 15.85 0.00 44.24 3.85
3009 3109 8.879342 AATTGTGGATTGAAACAATAACGAAA 57.121 26.923 1.78 0.00 44.24 3.46
3013 3113 7.759886 TGTGGATTGAAACAATAACGAAAACAA 59.240 29.630 0.00 0.00 0.00 2.83
3016 3116 7.169140 GGATTGAAACAATAACGAAAACAAGCT 59.831 33.333 0.00 0.00 0.00 3.74
3020 3120 7.646130 TGAAACAATAACGAAAACAAGCTAAGG 59.354 33.333 0.00 0.00 0.00 2.69
3026 3126 3.756963 ACGAAAACAAGCTAAGGGGAATC 59.243 43.478 0.00 0.00 0.00 2.52
3027 3127 4.010349 CGAAAACAAGCTAAGGGGAATCT 58.990 43.478 0.00 0.00 0.00 2.40
3064 3164 9.988350 AATGAGAACATGTAAAATTACGATGAC 57.012 29.630 0.00 11.57 36.79 3.06
3066 3166 8.440059 TGAGAACATGTAAAATTACGATGACAC 58.560 33.333 0.00 11.02 36.45 3.67
3067 3167 7.453034 AGAACATGTAAAATTACGATGACACG 58.547 34.615 0.00 0.00 36.45 4.49
3081 3181 5.151389 CGATGACACGGAAATGATATCGTA 58.849 41.667 0.00 0.00 35.86 3.43
3083 3183 6.237306 CGATGACACGGAAATGATATCGTATG 60.237 42.308 0.00 0.00 35.86 2.39
3093 3193 9.722056 GGAAATGATATCGTATGGAAAATATGC 57.278 33.333 0.00 0.00 0.00 3.14
3108 3208 8.730680 TGGAAAATATGCTAAGAGAACACTTTC 58.269 33.333 0.00 0.00 0.00 2.62
3113 3213 5.947228 TGCTAAGAGAACACTTTCATTGG 57.053 39.130 0.00 0.00 33.72 3.16
3132 3232 1.891722 GCCAGCCCAACCATGAAAGG 61.892 60.000 0.00 0.00 0.00 3.11
3135 3235 2.524306 CAGCCCAACCATGAAAGGTAA 58.476 47.619 0.00 0.00 42.25 2.85
3137 3237 3.515104 CAGCCCAACCATGAAAGGTAATT 59.485 43.478 0.00 0.00 42.25 1.40
3139 3239 5.186797 CAGCCCAACCATGAAAGGTAATTTA 59.813 40.000 0.00 0.00 42.25 1.40
3171 3271 9.941664 ATGATATGAAACTTATTTGAAAGCTCG 57.058 29.630 0.00 0.00 0.00 5.03
3190 3290 9.974980 AAAGCTCGAAAAATAGAAATAAAACCA 57.025 25.926 0.00 0.00 0.00 3.67
3232 3332 9.952188 TGAAACATGTAAAAATACGATGAAACA 57.048 25.926 0.00 0.00 0.00 2.83
3234 3334 9.737427 AAACATGTAAAAATACGATGAAACACA 57.263 25.926 0.00 0.00 0.00 3.72
3235 3335 9.906660 AACATGTAAAAATACGATGAAACACAT 57.093 25.926 0.00 0.00 42.47 3.21
3251 3351 9.816354 ATGAAACACATATGTAAAAATAAGGCC 57.184 29.630 8.32 0.00 38.45 5.19
3252 3352 7.971168 TGAAACACATATGTAAAAATAAGGCCG 59.029 33.333 8.32 0.00 38.45 6.13
3253 3353 5.827666 ACACATATGTAAAAATAAGGCCGC 58.172 37.500 8.32 0.00 37.26 6.53
3254 3354 4.909305 CACATATGTAAAAATAAGGCCGCG 59.091 41.667 8.32 0.00 0.00 6.46
3255 3355 4.817464 ACATATGTAAAAATAAGGCCGCGA 59.183 37.500 8.23 0.00 0.00 5.87
3256 3356 3.963383 ATGTAAAAATAAGGCCGCGAG 57.037 42.857 8.23 0.00 0.00 5.03
3257 3357 2.975266 TGTAAAAATAAGGCCGCGAGA 58.025 42.857 8.23 0.00 0.00 4.04
3258 3358 3.537580 TGTAAAAATAAGGCCGCGAGAT 58.462 40.909 8.23 0.00 0.00 2.75
3259 3359 3.558418 TGTAAAAATAAGGCCGCGAGATC 59.442 43.478 8.23 0.00 0.00 2.75
3260 3360 1.217882 AAAATAAGGCCGCGAGATCG 58.782 50.000 8.23 0.00 43.27 3.69
3261 3361 0.104304 AAATAAGGCCGCGAGATCGT 59.896 50.000 8.23 0.00 42.22 3.73
3262 3362 0.318784 AATAAGGCCGCGAGATCGTC 60.319 55.000 8.23 0.00 42.22 4.20
3271 3371 2.679199 CGAGATCGTCGTCCTCTGA 58.321 57.895 12.28 0.00 44.20 3.27
3272 3372 0.579630 CGAGATCGTCGTCCTCTGAG 59.420 60.000 0.00 0.00 44.20 3.35
3273 3373 1.658994 GAGATCGTCGTCCTCTGAGT 58.341 55.000 3.66 0.00 0.00 3.41
3274 3374 2.011222 GAGATCGTCGTCCTCTGAGTT 58.989 52.381 3.66 0.00 0.00 3.01
3275 3375 1.740585 AGATCGTCGTCCTCTGAGTTG 59.259 52.381 3.66 0.00 0.00 3.16
3276 3376 0.811915 ATCGTCGTCCTCTGAGTTGG 59.188 55.000 3.66 0.00 0.00 3.77
3277 3377 0.250597 TCGTCGTCCTCTGAGTTGGA 60.251 55.000 3.66 0.00 0.00 3.53
3278 3378 0.596577 CGTCGTCCTCTGAGTTGGAA 59.403 55.000 3.66 0.00 33.72 3.53
3279 3379 1.401670 CGTCGTCCTCTGAGTTGGAAG 60.402 57.143 3.66 0.00 33.72 3.46
3280 3380 1.614413 GTCGTCCTCTGAGTTGGAAGT 59.386 52.381 3.66 0.00 34.32 3.01
3281 3381 2.036089 GTCGTCCTCTGAGTTGGAAGTT 59.964 50.000 3.66 0.00 34.32 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.661247 ACACTCTCCAGACCTAGTAAGT 57.339 45.455 0.00 0.00 0.00 2.24
107 108 9.855021 GAACTAGGAATAGAGCTAGAATTGATC 57.145 37.037 0.00 0.00 0.00 2.92
145 146 4.811555 TTCAATGGAACTTTGACTGTCG 57.188 40.909 2.98 0.00 0.00 4.35
161 162 9.589111 AACCACGTAAACACTTTAATTTTCAAT 57.411 25.926 0.00 0.00 0.00 2.57
181 182 6.050454 TGACTTGTTTATGTACAAACCACG 57.950 37.500 0.00 0.00 37.55 4.94
253 254 4.345859 TCCCGATCACAAAAACTACACT 57.654 40.909 0.00 0.00 0.00 3.55
263 264 5.351948 TGATAGTTTCATCCCGATCACAA 57.648 39.130 0.00 0.00 0.00 3.33
309 310 2.238646 TCCGACATAGAACTTTGGCCAT 59.761 45.455 6.09 0.00 0.00 4.40
326 327 0.324368 AGGCTATGTGGACTGTCCGA 60.324 55.000 21.15 11.21 40.17 4.55
348 349 3.994392 TGCTAACAGAACTCGGAAATGTC 59.006 43.478 0.00 0.00 0.00 3.06
545 551 0.168348 CGGAGTGAGTAGTGACCACG 59.832 60.000 0.00 0.00 34.07 4.94
552 558 3.156157 CTCCGTCGGAGTGAGTAGT 57.844 57.895 29.66 0.00 44.25 2.73
641 647 4.640771 ATCCTATTACATGACCGCCATT 57.359 40.909 0.00 0.00 31.94 3.16
699 705 4.141733 ACAAACTAGCCAAAAAGCCACAAT 60.142 37.500 0.00 0.00 0.00 2.71
800 811 5.899120 TGCATACGGCCAACTTTATAAAA 57.101 34.783 2.24 0.00 43.89 1.52
869 880 8.446273 CACACAAGAATACAAGATAACAAGAGG 58.554 37.037 0.00 0.00 0.00 3.69
870 881 9.208022 TCACACAAGAATACAAGATAACAAGAG 57.792 33.333 0.00 0.00 0.00 2.85
871 882 8.988934 GTCACACAAGAATACAAGATAACAAGA 58.011 33.333 0.00 0.00 0.00 3.02
872 883 8.773645 TGTCACACAAGAATACAAGATAACAAG 58.226 33.333 0.00 0.00 0.00 3.16
873 884 8.669946 TGTCACACAAGAATACAAGATAACAA 57.330 30.769 0.00 0.00 0.00 2.83
878 889 6.432162 AGCATTGTCACACAAGAATACAAGAT 59.568 34.615 0.00 0.00 41.94 2.40
902 913 6.647067 CACCTAGCCCTTTTATATTCTTCGAG 59.353 42.308 0.00 0.00 0.00 4.04
906 917 6.841781 TCCACCTAGCCCTTTTATATTCTT 57.158 37.500 0.00 0.00 0.00 2.52
908 919 7.228906 GTCTTTCCACCTAGCCCTTTTATATTC 59.771 40.741 0.00 0.00 0.00 1.75
929 940 4.586306 AGTTTTCGATATGGGGGTCTTT 57.414 40.909 0.00 0.00 0.00 2.52
944 960 3.922910 ACTCGTAGGTAGGCAAGTTTTC 58.077 45.455 0.00 0.00 0.00 2.29
949 965 6.916932 GTCTATAAAACTCGTAGGTAGGCAAG 59.083 42.308 0.00 0.00 0.00 4.01
956 972 6.404513 GCTCTGTGTCTATAAAACTCGTAGGT 60.405 42.308 0.00 0.00 0.00 3.08
957 973 5.972382 GCTCTGTGTCTATAAAACTCGTAGG 59.028 44.000 0.00 0.00 0.00 3.18
967 983 4.962362 TCCAATGAGGCTCTGTGTCTATAA 59.038 41.667 16.72 0.00 37.29 0.98
975 992 3.521126 AGTACAATCCAATGAGGCTCTGT 59.479 43.478 16.72 11.83 37.29 3.41
984 1001 4.999950 GGCTCCATCTAGTACAATCCAATG 59.000 45.833 0.00 0.00 0.00 2.82
1009 1026 0.884514 TCGTCTTCAGCTCTCACTGG 59.115 55.000 0.00 0.00 38.26 4.00
1011 1028 1.173043 CCTCGTCTTCAGCTCTCACT 58.827 55.000 0.00 0.00 0.00 3.41
1098 1115 2.029666 GCACCGAGCGCCATAGAT 59.970 61.111 2.29 0.00 0.00 1.98
1110 1127 4.988598 AGTTCTGTGGCGGCACCG 62.989 66.667 35.54 30.01 43.94 4.94
1272 1289 1.318576 CACCACCGCCTTCTTTTTCT 58.681 50.000 0.00 0.00 0.00 2.52
1330 1347 4.421479 ACGCTTGCCGACTCCGAG 62.421 66.667 0.00 0.00 41.02 4.63
1395 1412 0.390492 CGCAGATGCTCATGGGAGTA 59.610 55.000 0.00 0.00 43.37 2.59
1546 1563 0.534412 AGCAGAACCTCCATGACGAG 59.466 55.000 0.00 0.00 0.00 4.18
1596 1613 2.942796 ATCGACAAGTGAGCCGGCA 61.943 57.895 31.54 5.56 0.00 5.69
1653 1670 3.555324 TGAGGGAACGCTGTGGCA 61.555 61.111 0.00 0.00 38.60 4.92
1716 1733 1.519676 CACGTTGGTGGTGTCGTCA 60.520 57.895 0.00 0.00 40.58 4.35
1727 1744 0.307760 GGAGACAAACTGCACGTTGG 59.692 55.000 8.95 5.90 35.61 3.77
1740 1757 1.478916 TCAAACATATCGCCGGAGACA 59.521 47.619 11.10 0.00 0.00 3.41
1802 1819 5.472820 CCTTACGGAGGGAGTACTATGTAAG 59.527 48.000 0.00 8.08 42.26 2.34
1803 1820 5.132648 TCCTTACGGAGGGAGTACTATGTAA 59.867 44.000 0.00 0.00 46.31 2.41
1808 1825 7.761981 ATATATCCTTACGGAGGGAGTACTA 57.238 40.000 4.21 0.00 46.31 1.82
1809 1826 6.655376 ATATATCCTTACGGAGGGAGTACT 57.345 41.667 4.21 0.00 46.31 2.73
1810 1827 8.270744 TCTTATATATCCTTACGGAGGGAGTAC 58.729 40.741 4.21 0.00 46.31 2.73
1855 1929 5.240623 AGTGCGTTTGGATCAATCACTAAAA 59.759 36.000 0.00 0.00 31.97 1.52
1857 1931 4.323417 AGTGCGTTTGGATCAATCACTAA 58.677 39.130 0.00 0.00 31.97 2.24
1860 1934 3.559238 AAGTGCGTTTGGATCAATCAC 57.441 42.857 0.00 0.00 0.00 3.06
1861 1935 7.566760 AATATAAGTGCGTTTGGATCAATCA 57.433 32.000 0.00 0.00 0.00 2.57
1863 1937 8.225603 AGAAATATAAGTGCGTTTGGATCAAT 57.774 30.769 0.00 0.00 0.00 2.57
1865 1939 7.624360 AAGAAATATAAGTGCGTTTGGATCA 57.376 32.000 0.00 0.00 0.00 2.92
1867 1941 8.952278 TGTAAAGAAATATAAGTGCGTTTGGAT 58.048 29.630 0.00 0.00 0.00 3.41
1868 1942 8.325421 TGTAAAGAAATATAAGTGCGTTTGGA 57.675 30.769 0.00 0.00 0.00 3.53
1870 1944 9.478019 CTCTGTAAAGAAATATAAGTGCGTTTG 57.522 33.333 0.00 0.00 0.00 2.93
1874 1948 6.984474 TCCCTCTGTAAAGAAATATAAGTGCG 59.016 38.462 0.00 0.00 0.00 5.34
1875 1949 7.988028 ACTCCCTCTGTAAAGAAATATAAGTGC 59.012 37.037 0.00 0.00 0.00 4.40
1878 1952 9.699703 GCTACTCCCTCTGTAAAGAAATATAAG 57.300 37.037 0.00 0.00 0.00 1.73
1880 1954 8.639761 GTGCTACTCCCTCTGTAAAGAAATATA 58.360 37.037 0.00 0.00 0.00 0.86
1883 1957 5.248477 TGTGCTACTCCCTCTGTAAAGAAAT 59.752 40.000 0.00 0.00 0.00 2.17
1887 1961 4.744795 ATGTGCTACTCCCTCTGTAAAG 57.255 45.455 0.00 0.00 0.00 1.85
1890 1964 4.245251 TGTATGTGCTACTCCCTCTGTA 57.755 45.455 0.00 0.00 0.00 2.74
1891 1965 3.101643 TGTATGTGCTACTCCCTCTGT 57.898 47.619 0.00 0.00 0.00 3.41
1892 1966 4.471904 TTTGTATGTGCTACTCCCTCTG 57.528 45.455 0.00 0.00 0.00 3.35
1894 1968 3.561725 GCATTTGTATGTGCTACTCCCTC 59.438 47.826 0.00 0.00 38.30 4.30
1895 1969 3.054434 TGCATTTGTATGTGCTACTCCCT 60.054 43.478 0.00 0.00 41.78 4.20
1897 1971 3.242870 GCTGCATTTGTATGTGCTACTCC 60.243 47.826 0.00 0.00 41.78 3.85
1904 1990 3.226346 AGCTTGCTGCATTTGTATGTG 57.774 42.857 1.84 0.00 45.94 3.21
1943 2029 9.883142 GGATTGGTTGATTAATTTGGTTCATTA 57.117 29.630 0.00 0.00 0.00 1.90
1994 2080 0.770499 TGGTCTTCCCAGTCATGCAA 59.230 50.000 0.00 0.00 38.72 4.08
2115 2201 0.389166 CTGTGTCTCCGTCTCCTTGC 60.389 60.000 0.00 0.00 0.00 4.01
2188 2274 5.380043 TCAAAGAAAATCTTGCTCCACTCT 58.620 37.500 0.00 0.00 36.71 3.24
2224 2310 3.771479 AGACTGGCATGATCTTGTAGTCA 59.229 43.478 28.62 16.04 36.38 3.41
2286 2372 1.271934 CATTTGGACATCAAACCGCCA 59.728 47.619 0.00 0.00 46.72 5.69
2289 2375 5.371115 AAGTACATTTGGACATCAAACCG 57.629 39.130 0.00 0.00 46.72 4.44
2295 2381 6.349363 GGAAACAGGAAGTACATTTGGACATC 60.349 42.308 0.00 0.00 0.00 3.06
2296 2382 5.476945 GGAAACAGGAAGTACATTTGGACAT 59.523 40.000 0.00 0.00 0.00 3.06
2314 2400 6.205464 TGAAAGCAAACAAACATTTGGAAACA 59.795 30.769 9.09 0.00 42.34 2.83
2315 2401 6.522855 GTGAAAGCAAACAAACATTTGGAAAC 59.477 34.615 9.09 0.00 42.34 2.78
2330 2416 6.071221 AGGCATTATTCTGATGTGAAAGCAAA 60.071 34.615 0.00 0.00 0.00 3.68
2339 2425 7.805083 ATAGTCCTAGGCATTATTCTGATGT 57.195 36.000 2.96 0.00 0.00 3.06
2340 2426 8.976353 AGTATAGTCCTAGGCATTATTCTGATG 58.024 37.037 2.96 0.00 0.00 3.07
2415 2501 6.961358 TGAATTATGAACGAAAACAACACG 57.039 33.333 0.00 0.00 0.00 4.49
2427 2513 9.955208 TTCATTGTGAGCATATGAATTATGAAC 57.045 29.630 6.97 0.00 40.22 3.18
2447 2533 9.630098 ACAAAAATAGCAGACTGTATTTCATTG 57.370 29.630 16.53 17.78 30.22 2.82
2525 2611 2.359230 GCGAACAAGCCAGCCTCT 60.359 61.111 0.00 0.00 0.00 3.69
2564 2650 0.740868 TCATTTCGGCAAGGAGCTCG 60.741 55.000 7.83 0.00 44.79 5.03
2576 2662 6.313905 ACCAGTGCTACTAGAATTTCATTTCG 59.686 38.462 0.00 0.00 0.00 3.46
2592 2688 2.954318 GACCCGATAGTAACCAGTGCTA 59.046 50.000 0.00 0.00 0.00 3.49
2593 2689 1.755380 GACCCGATAGTAACCAGTGCT 59.245 52.381 0.00 0.00 0.00 4.40
2612 2708 2.226200 CACAAATGACGAACATGCAGGA 59.774 45.455 4.84 0.00 39.39 3.86
2613 2709 2.587956 CACAAATGACGAACATGCAGG 58.412 47.619 0.00 0.00 39.39 4.85
2640 2737 5.073311 AGAGTACTCGTATGCATTGTGTT 57.927 39.130 17.07 0.00 34.09 3.32
2676 2773 8.970859 ATGGTCCAATGAAAACAATACAAAAA 57.029 26.923 0.00 0.00 0.00 1.94
2713 2810 8.094548 AGTCTGTGTGCAATAAATACTCTGTTA 58.905 33.333 0.00 0.00 0.00 2.41
2733 2830 8.934023 TGGGTTGAAAGAATAAAATAGTCTGT 57.066 30.769 0.00 0.00 32.82 3.41
2746 2843 5.710099 GTGGATGAACTATGGGTTGAAAGAA 59.290 40.000 0.00 0.00 38.41 2.52
2754 2851 1.564348 GTGGGTGGATGAACTATGGGT 59.436 52.381 0.00 0.00 0.00 4.51
2760 2857 3.312736 AAAAGTGTGGGTGGATGAACT 57.687 42.857 0.00 0.00 0.00 3.01
2763 2860 3.650942 AGACTAAAAGTGTGGGTGGATGA 59.349 43.478 0.00 0.00 0.00 2.92
2767 2864 3.485463 TCAGACTAAAAGTGTGGGTGG 57.515 47.619 4.59 0.00 39.67 4.61
2770 2867 7.979444 TTTAGAATCAGACTAAAAGTGTGGG 57.021 36.000 4.59 0.00 39.67 4.61
2822 2919 9.883142 AATTTGGAATTTTACTTGTTCAGAACA 57.117 25.926 12.24 12.24 40.21 3.18
2828 2925 9.914923 GTGTCAAATTTGGAATTTTACTTGTTC 57.085 29.630 17.90 0.00 0.00 3.18
2829 2926 8.888716 GGTGTCAAATTTGGAATTTTACTTGTT 58.111 29.630 17.90 0.00 0.00 2.83
2830 2927 8.043710 TGGTGTCAAATTTGGAATTTTACTTGT 58.956 29.630 17.90 0.00 0.00 3.16
2831 2928 8.430801 TGGTGTCAAATTTGGAATTTTACTTG 57.569 30.769 17.90 0.00 0.00 3.16
2836 2933 9.790344 TCATTATGGTGTCAAATTTGGAATTTT 57.210 25.926 17.90 3.15 0.00 1.82
2839 2936 9.218440 GTTTCATTATGGTGTCAAATTTGGAAT 57.782 29.630 17.90 7.54 0.00 3.01
2840 2937 8.428063 AGTTTCATTATGGTGTCAAATTTGGAA 58.572 29.630 17.90 6.70 0.00 3.53
2841 2938 7.961351 AGTTTCATTATGGTGTCAAATTTGGA 58.039 30.769 17.90 2.71 0.00 3.53
2842 2939 8.606040 AAGTTTCATTATGGTGTCAAATTTGG 57.394 30.769 17.90 0.12 0.00 3.28
2847 2944 9.072375 TGACATAAGTTTCATTATGGTGTCAAA 57.928 29.630 10.31 0.00 44.13 2.69
2848 2945 8.628630 TGACATAAGTTTCATTATGGTGTCAA 57.371 30.769 10.31 0.00 44.13 3.18
2849 2946 8.628630 TTGACATAAGTTTCATTATGGTGTCA 57.371 30.769 10.31 0.00 44.13 3.58
2851 2948 9.859427 CATTTGACATAAGTTTCATTATGGTGT 57.141 29.630 10.31 0.00 44.13 4.16
2852 2949 9.859427 ACATTTGACATAAGTTTCATTATGGTG 57.141 29.630 10.31 4.87 44.13 4.17
2859 2956 9.234827 TGATCTCACATTTGACATAAGTTTCAT 57.765 29.630 0.00 0.00 0.00 2.57
2860 2957 8.620116 TGATCTCACATTTGACATAAGTTTCA 57.380 30.769 0.00 0.00 0.00 2.69
2884 2981 8.298854 TGGTTCACTTCAGTTTCATTTCATATG 58.701 33.333 0.00 0.00 0.00 1.78
2888 2985 6.522625 TTGGTTCACTTCAGTTTCATTTCA 57.477 33.333 0.00 0.00 0.00 2.69
2959 3059 8.546597 TCGTCTATGTTTCATCTCAAATTTGA 57.453 30.769 19.45 19.45 35.57 2.69
2965 3065 7.148423 CCACAATTCGTCTATGTTTCATCTCAA 60.148 37.037 0.00 0.00 0.00 3.02
2972 3072 7.072177 TCAATCCACAATTCGTCTATGTTTC 57.928 36.000 0.00 0.00 0.00 2.78
2973 3073 7.447374 TTCAATCCACAATTCGTCTATGTTT 57.553 32.000 0.00 0.00 0.00 2.83
2975 3075 6.429692 TGTTTCAATCCACAATTCGTCTATGT 59.570 34.615 0.00 0.00 0.00 2.29
2982 3082 6.799441 TCGTTATTGTTTCAATCCACAATTCG 59.201 34.615 3.04 8.62 40.05 3.34
2983 3083 8.514136 TTCGTTATTGTTTCAATCCACAATTC 57.486 30.769 3.04 0.00 40.05 2.17
2986 3086 7.759886 TGTTTTCGTTATTGTTTCAATCCACAA 59.240 29.630 0.00 0.00 37.31 3.33
2987 3087 7.258441 TGTTTTCGTTATTGTTTCAATCCACA 58.742 30.769 0.00 0.00 0.00 4.17
2988 3088 7.687005 TGTTTTCGTTATTGTTTCAATCCAC 57.313 32.000 0.00 0.00 0.00 4.02
2993 3093 8.912787 TTAGCTTGTTTTCGTTATTGTTTCAA 57.087 26.923 0.00 0.00 0.00 2.69
3007 3107 6.731467 TCATAGATTCCCCTTAGCTTGTTTT 58.269 36.000 0.00 0.00 0.00 2.43
3009 3109 5.975988 TCATAGATTCCCCTTAGCTTGTT 57.024 39.130 0.00 0.00 0.00 2.83
3039 3139 9.161629 TGTCATCGTAATTTTACATGTTCTCAT 57.838 29.630 2.30 0.00 33.28 2.90
3043 3143 6.681178 CCGTGTCATCGTAATTTTACATGTTC 59.319 38.462 2.30 4.11 33.28 3.18
3046 3146 6.339194 TCCGTGTCATCGTAATTTTACATG 57.661 37.500 0.00 0.00 33.28 3.21
3057 3157 3.981416 CGATATCATTTCCGTGTCATCGT 59.019 43.478 3.12 0.00 33.47 3.73
3058 3158 3.981416 ACGATATCATTTCCGTGTCATCG 59.019 43.478 3.12 0.00 38.53 3.84
3064 3164 6.779115 TTTCCATACGATATCATTTCCGTG 57.221 37.500 3.12 0.00 36.58 4.94
3066 3166 9.920826 CATATTTTCCATACGATATCATTTCCG 57.079 33.333 3.12 0.00 0.00 4.30
3067 3167 9.722056 GCATATTTTCCATACGATATCATTTCC 57.278 33.333 3.12 0.00 0.00 3.13
3081 3181 8.814038 AAGTGTTCTCTTAGCATATTTTCCAT 57.186 30.769 0.00 0.00 0.00 3.41
3083 3183 8.730680 TGAAAGTGTTCTCTTAGCATATTTTCC 58.269 33.333 0.00 0.00 34.60 3.13
3093 3193 4.761739 TGGCCAATGAAAGTGTTCTCTTAG 59.238 41.667 0.61 0.00 34.60 2.18
3094 3194 4.724399 TGGCCAATGAAAGTGTTCTCTTA 58.276 39.130 0.61 0.00 34.60 2.10
3108 3208 1.991167 ATGGTTGGGCTGGCCAATG 60.991 57.895 34.15 0.00 37.98 2.82
3110 3210 2.604079 CATGGTTGGGCTGGCCAA 60.604 61.111 29.42 29.42 37.98 4.52
3113 3213 1.593265 CTTTCATGGTTGGGCTGGC 59.407 57.895 0.00 0.00 0.00 4.85
3225 3325 9.816354 GGCCTTATTTTTACATATGTGTTTCAT 57.184 29.630 18.81 6.61 39.77 2.57
3226 3326 7.971168 CGGCCTTATTTTTACATATGTGTTTCA 59.029 33.333 18.81 0.00 39.77 2.69
3227 3327 7.043656 GCGGCCTTATTTTTACATATGTGTTTC 60.044 37.037 18.81 0.00 39.77 2.78
3228 3328 6.754675 GCGGCCTTATTTTTACATATGTGTTT 59.245 34.615 18.81 1.79 39.77 2.83
3229 3329 6.270064 GCGGCCTTATTTTTACATATGTGTT 58.730 36.000 18.81 1.45 39.77 3.32
3230 3330 5.504994 CGCGGCCTTATTTTTACATATGTGT 60.505 40.000 18.81 0.00 42.39 3.72
3231 3331 4.909305 CGCGGCCTTATTTTTACATATGTG 59.091 41.667 18.81 0.00 0.00 3.21
3232 3332 4.817464 TCGCGGCCTTATTTTTACATATGT 59.183 37.500 13.93 13.93 0.00 2.29
3233 3333 5.178623 TCTCGCGGCCTTATTTTTACATATG 59.821 40.000 6.13 0.00 0.00 1.78
3234 3334 5.302360 TCTCGCGGCCTTATTTTTACATAT 58.698 37.500 6.13 0.00 0.00 1.78
3235 3335 4.695396 TCTCGCGGCCTTATTTTTACATA 58.305 39.130 6.13 0.00 0.00 2.29
3236 3336 3.537580 TCTCGCGGCCTTATTTTTACAT 58.462 40.909 6.13 0.00 0.00 2.29
3237 3337 2.975266 TCTCGCGGCCTTATTTTTACA 58.025 42.857 6.13 0.00 0.00 2.41
3238 3338 3.362693 CGATCTCGCGGCCTTATTTTTAC 60.363 47.826 6.13 0.00 0.00 2.01
3239 3339 2.798283 CGATCTCGCGGCCTTATTTTTA 59.202 45.455 6.13 0.00 0.00 1.52
3240 3340 1.597663 CGATCTCGCGGCCTTATTTTT 59.402 47.619 6.13 0.00 0.00 1.94
3241 3341 1.217882 CGATCTCGCGGCCTTATTTT 58.782 50.000 6.13 0.00 0.00 1.82
3242 3342 0.104304 ACGATCTCGCGGCCTTATTT 59.896 50.000 6.13 0.00 44.43 1.40
3243 3343 0.318784 GACGATCTCGCGGCCTTATT 60.319 55.000 6.13 0.00 44.43 1.40
3244 3344 1.286260 GACGATCTCGCGGCCTTAT 59.714 57.895 6.13 0.00 44.43 1.73
3245 3345 2.719979 GACGATCTCGCGGCCTTA 59.280 61.111 6.13 0.00 44.43 2.69
3246 3346 4.554363 CGACGATCTCGCGGCCTT 62.554 66.667 6.13 0.00 44.43 4.35
3254 3354 1.658994 ACTCAGAGGACGACGATCTC 58.341 55.000 0.00 7.93 0.00 2.75
3255 3355 1.740585 CAACTCAGAGGACGACGATCT 59.259 52.381 0.00 0.00 0.00 2.75
3256 3356 1.202200 CCAACTCAGAGGACGACGATC 60.202 57.143 0.00 0.00 0.00 3.69
3257 3357 0.811915 CCAACTCAGAGGACGACGAT 59.188 55.000 0.00 0.00 0.00 3.73
3258 3358 0.250597 TCCAACTCAGAGGACGACGA 60.251 55.000 0.00 0.00 0.00 4.20
3259 3359 0.596577 TTCCAACTCAGAGGACGACG 59.403 55.000 1.53 0.00 32.62 5.12
3260 3360 1.614413 ACTTCCAACTCAGAGGACGAC 59.386 52.381 1.53 0.00 32.62 4.34
3261 3361 1.996798 ACTTCCAACTCAGAGGACGA 58.003 50.000 1.53 0.00 32.62 4.20
3262 3362 2.821991 AACTTCCAACTCAGAGGACG 57.178 50.000 1.53 0.00 32.62 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.