Multiple sequence alignment - TraesCS1D01G009400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G009400 chr1D 100.000 3053 0 0 1 3053 5138131 5141183 0.000000e+00 5638.0
1 TraesCS1D01G009400 chr1D 85.597 1826 181 43 1266 3051 5356891 5358674 0.000000e+00 1840.0
2 TraesCS1D01G009400 chr1D 84.722 1800 180 50 1256 3041 3710385 3708667 0.000000e+00 1712.0
3 TraesCS1D01G009400 chr1D 82.559 1571 210 42 1100 2635 4341902 4343443 0.000000e+00 1325.0
4 TraesCS1D01G009400 chr1D 82.807 1553 198 43 1120 2635 7156472 7154952 0.000000e+00 1325.0
5 TraesCS1D01G009400 chr1D 82.192 1533 169 62 1295 2789 3826165 3824699 0.000000e+00 1223.0
6 TraesCS1D01G009400 chr1D 83.662 1114 124 37 404 1492 98754 99834 0.000000e+00 996.0
7 TraesCS1D01G009400 chr1D 85.241 935 104 19 404 1328 5356163 5357073 0.000000e+00 931.0
8 TraesCS1D01G009400 chr1D 83.457 943 110 29 407 1332 3711102 3710189 0.000000e+00 835.0
9 TraesCS1D01G009400 chr1D 79.939 329 37 16 1096 1417 99576 99882 6.630000e-52 215.0
10 TraesCS1D01G009400 chr1D 90.071 141 14 0 2849 2989 4347178 4347318 1.870000e-42 183.0
11 TraesCS1D01G009400 chr1D 81.498 227 32 10 1121 1345 5139404 5139622 8.700000e-41 178.0
12 TraesCS1D01G009400 chr1D 100.000 32 0 0 2816 2847 4347036 4347067 3.290000e-05 60.2
13 TraesCS1D01G009400 chr1B 85.020 2016 220 50 657 2635 6437817 6435847 0.000000e+00 1975.0
14 TraesCS1D01G009400 chr1B 83.424 2033 241 55 655 2635 22185385 22187373 0.000000e+00 1799.0
15 TraesCS1D01G009400 chr1B 83.359 1280 136 45 599 1812 5521158 5519890 0.000000e+00 1112.0
16 TraesCS1D01G009400 chr1B 83.677 1115 133 34 404 1492 5688293 5687202 0.000000e+00 1005.0
17 TraesCS1D01G009400 chr1B 86.809 705 75 15 591 1286 5585887 5585192 0.000000e+00 771.0
18 TraesCS1D01G009400 chr1B 81.949 626 77 22 1202 1812 5584961 5584357 5.880000e-137 497.0
19 TraesCS1D01G009400 chr1B 80.000 320 29 16 1103 1388 5687450 5687132 1.440000e-48 204.0
20 TraesCS1D01G009400 chr1B 91.608 143 10 2 404 544 5586033 5585891 2.400000e-46 196.0
21 TraesCS1D01G009400 chr1B 81.900 221 24 9 2849 3053 7314102 7313882 4.050000e-39 172.0
22 TraesCS1D01G009400 chr1B 88.652 141 15 1 2849 2989 22191151 22191290 1.460000e-38 171.0
23 TraesCS1D01G009400 chr1B 91.150 113 8 2 404 514 5521275 5521163 5.270000e-33 152.0
24 TraesCS1D01G009400 chr1B 100.000 33 0 0 2816 2848 22191009 22191041 9.140000e-06 62.1
25 TraesCS1D01G009400 chr1A 86.321 1813 181 42 1256 3041 6517558 6519330 0.000000e+00 1912.0
26 TraesCS1D01G009400 chr1A 85.977 1034 90 30 1269 2290 6561929 6562919 0.000000e+00 1055.0
27 TraesCS1D01G009400 chr1A 85.823 917 96 19 420 1325 6561210 6562103 0.000000e+00 942.0
28 TraesCS1D01G009400 chr1A 84.144 946 109 24 404 1328 6516819 6517744 0.000000e+00 878.0
29 TraesCS1D01G009400 chr1A 85.907 667 76 6 407 1062 4097423 4096764 0.000000e+00 695.0
30 TraesCS1D01G009400 chr1A 82.719 787 81 26 1864 2633 4095915 4095167 0.000000e+00 649.0
31 TraesCS1D01G009400 chr1A 82.390 477 60 19 1264 1719 4203001 4202528 7.930000e-106 394.0
32 TraesCS1D01G009400 chr4D 87.023 393 13 11 23 377 5229486 5229094 2.830000e-110 409.0
33 TraesCS1D01G009400 chr4D 82.392 301 38 15 3 295 378255620 378255913 6.540000e-62 248.0
34 TraesCS1D01G009400 chr4D 78.467 274 36 16 120 375 342914486 342914754 1.130000e-34 158.0
35 TraesCS1D01G009400 chr3B 90.221 317 22 8 3 315 70911609 70911298 3.670000e-109 405.0
36 TraesCS1D01G009400 chr3B 92.135 89 6 1 291 378 70911286 70911198 1.150000e-24 124.0
37 TraesCS1D01G009400 chr2A 85.804 317 32 11 3 314 770926423 770926115 1.060000e-84 324.0
38 TraesCS1D01G009400 chr2A 90.244 82 6 2 291 370 770926102 770926021 4.160000e-19 106.0
39 TraesCS1D01G009400 chr5A 81.360 397 51 15 1 378 482490758 482490366 4.950000e-78 302.0
40 TraesCS1D01G009400 chr5A 82.353 153 21 5 3 152 18944579 18944728 8.880000e-26 128.0
41 TraesCS1D01G009400 chr6B 83.168 303 30 19 3 296 365391751 365392041 1.090000e-64 257.0
42 TraesCS1D01G009400 chr6A 81.505 319 43 13 3 313 52906103 52905793 6.540000e-62 248.0
43 TraesCS1D01G009400 chr7D 83.740 123 11 7 252 368 606657090 606657209 1.160000e-19 108.0
44 TraesCS1D01G009400 chr5D 89.610 77 7 1 293 368 305988939 305988863 2.510000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G009400 chr1D 5138131 5141183 3052 False 2908.000000 5638 90.749000 1 3053 2 chr1D.!!$F3 3052
1 TraesCS1D01G009400 chr1D 5356163 5358674 2511 False 1385.500000 1840 85.419000 404 3051 2 chr1D.!!$F4 2647
2 TraesCS1D01G009400 chr1D 7154952 7156472 1520 True 1325.000000 1325 82.807000 1120 2635 1 chr1D.!!$R2 1515
3 TraesCS1D01G009400 chr1D 3708667 3711102 2435 True 1273.500000 1712 84.089500 407 3041 2 chr1D.!!$R3 2634
4 TraesCS1D01G009400 chr1D 3824699 3826165 1466 True 1223.000000 1223 82.192000 1295 2789 1 chr1D.!!$R1 1494
5 TraesCS1D01G009400 chr1D 98754 99882 1128 False 605.500000 996 81.800500 404 1492 2 chr1D.!!$F1 1088
6 TraesCS1D01G009400 chr1D 4341902 4347318 5416 False 522.733333 1325 90.876667 1100 2989 3 chr1D.!!$F2 1889
7 TraesCS1D01G009400 chr1B 6435847 6437817 1970 True 1975.000000 1975 85.020000 657 2635 1 chr1B.!!$R1 1978
8 TraesCS1D01G009400 chr1B 22185385 22191290 5905 False 677.366667 1799 90.692000 655 2989 3 chr1B.!!$F1 2334
9 TraesCS1D01G009400 chr1B 5519890 5521275 1385 True 632.000000 1112 87.254500 404 1812 2 chr1B.!!$R3 1408
10 TraesCS1D01G009400 chr1B 5687132 5688293 1161 True 604.500000 1005 81.838500 404 1492 2 chr1B.!!$R5 1088
11 TraesCS1D01G009400 chr1B 5584357 5586033 1676 True 488.000000 771 86.788667 404 1812 3 chr1B.!!$R4 1408
12 TraesCS1D01G009400 chr1A 6516819 6519330 2511 False 1395.000000 1912 85.232500 404 3041 2 chr1A.!!$F1 2637
13 TraesCS1D01G009400 chr1A 6561210 6562919 1709 False 998.500000 1055 85.900000 420 2290 2 chr1A.!!$F2 1870
14 TraesCS1D01G009400 chr1A 4095167 4097423 2256 True 672.000000 695 84.313000 407 2633 2 chr1A.!!$R2 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 626 0.165944 CACGATTGCGACTTGGTTCC 59.834 55.0 0.0 0.0 41.64 3.62 F
1427 2195 0.031857 CAACCACCATTTTCGCAGCA 59.968 50.0 0.0 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2733 0.111061 TCTGGTGTGGCTGCAAGAAT 59.889 50.000 0.50 0.0 34.07 2.40 R
2249 3085 2.154462 ACTTGCAAGCATGGTAGTCAC 58.846 47.619 26.27 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 9.885934 TTTCAAATTCGATGAACTATTTTTCGA 57.114 25.926 0.00 0.00 36.57 3.71
80 81 9.489393 TCGATGAACTATTTTTCGAATTCAATG 57.511 29.630 12.21 8.68 36.05 2.82
81 82 9.489393 CGATGAACTATTTTTCGAATTCAATGA 57.511 29.630 12.21 0.00 30.46 2.57
92 93 9.579768 TTTTCGAATTCAATGAACTTTTTCTGA 57.420 25.926 6.22 0.00 32.36 3.27
93 94 9.579768 TTTCGAATTCAATGAACTTTTTCTGAA 57.420 25.926 6.22 4.56 33.05 3.02
94 95 9.748708 TTCGAATTCAATGAACTTTTTCTGAAT 57.251 25.926 6.22 0.00 37.85 2.57
95 96 9.748708 TCGAATTCAATGAACTTTTTCTGAATT 57.251 25.926 6.22 11.46 43.03 2.17
96 97 9.999883 CGAATTCAATGAACTTTTTCTGAATTC 57.000 29.630 19.80 19.80 46.06 2.17
97 98 9.999883 GAATTCAATGAACTTTTTCTGAATTCG 57.000 29.630 17.42 0.00 43.96 3.34
98 99 9.748708 AATTCAATGAACTTTTTCTGAATTCGA 57.251 25.926 0.00 0.00 39.81 3.71
99 100 9.918630 ATTCAATGAACTTTTTCTGAATTCGAT 57.081 25.926 0.00 0.00 34.97 3.59
100 101 8.732413 TCAATGAACTTTTTCTGAATTCGATG 57.268 30.769 0.04 0.00 32.36 3.84
101 102 8.567104 TCAATGAACTTTTTCTGAATTCGATGA 58.433 29.630 0.04 0.00 32.36 2.92
102 103 9.184062 CAATGAACTTTTTCTGAATTCGATGAA 57.816 29.630 0.04 2.94 32.36 2.57
103 104 8.733857 ATGAACTTTTTCTGAATTCGATGAAC 57.266 30.769 0.04 0.00 32.36 3.18
104 105 7.930217 TGAACTTTTTCTGAATTCGATGAACT 58.070 30.769 0.04 0.00 32.36 3.01
105 106 8.405531 TGAACTTTTTCTGAATTCGATGAACTT 58.594 29.630 0.04 0.00 32.36 2.66
106 107 9.237846 GAACTTTTTCTGAATTCGATGAACTTT 57.762 29.630 0.04 0.00 0.00 2.66
112 113 9.541724 TTTCTGAATTCGATGAACTTTATTTCG 57.458 29.630 0.04 0.00 0.00 3.46
113 114 8.474006 TCTGAATTCGATGAACTTTATTTCGA 57.526 30.769 0.04 0.00 37.08 3.71
121 122 9.489393 TCGATGAACTTTATTTCGAATTCAATG 57.511 29.630 12.21 8.68 36.05 2.82
122 123 9.489393 CGATGAACTTTATTTCGAATTCAATGA 57.511 29.630 12.21 0.00 30.46 2.57
133 134 7.780253 TTCGAATTCAATGAACTTTTGATCG 57.220 32.000 6.22 1.17 37.13 3.69
134 135 7.127917 TCGAATTCAATGAACTTTTGATCGA 57.872 32.000 6.22 7.60 39.96 3.59
135 136 7.580600 TCGAATTCAATGAACTTTTGATCGAA 58.419 30.769 6.22 0.00 39.62 3.71
136 137 8.236586 TCGAATTCAATGAACTTTTGATCGAAT 58.763 29.630 6.22 0.00 39.62 3.34
137 138 8.853345 CGAATTCAATGAACTTTTGATCGAATT 58.147 29.630 6.22 0.00 37.60 2.17
139 140 7.780253 TTCAATGAACTTTTGATCGAATTCG 57.220 32.000 21.78 21.78 41.45 3.34
186 187 9.874205 TGAACTTTTTCAAATTCTGATGAACTT 57.126 25.926 0.00 0.00 38.87 2.66
195 196 9.316730 TCAAATTCTGATGAACTTTTTGAAAGG 57.683 29.630 5.52 0.00 36.54 3.11
196 197 9.316730 CAAATTCTGATGAACTTTTTGAAAGGA 57.683 29.630 5.52 0.00 34.30 3.36
197 198 8.877808 AATTCTGATGAACTTTTTGAAAGGAC 57.122 30.769 5.52 0.43 34.71 3.85
198 199 7.403312 TTCTGATGAACTTTTTGAAAGGACA 57.597 32.000 5.52 5.24 0.00 4.02
199 200 7.403312 TCTGATGAACTTTTTGAAAGGACAA 57.597 32.000 5.52 0.00 0.00 3.18
200 201 7.483307 TCTGATGAACTTTTTGAAAGGACAAG 58.517 34.615 5.52 1.93 0.00 3.16
201 202 7.339212 TCTGATGAACTTTTTGAAAGGACAAGA 59.661 33.333 5.52 3.70 0.00 3.02
202 203 7.483307 TGATGAACTTTTTGAAAGGACAAGAG 58.517 34.615 5.52 0.00 0.00 2.85
203 204 6.834168 TGAACTTTTTGAAAGGACAAGAGT 57.166 33.333 5.52 0.00 33.12 3.24
204 205 7.931578 TGAACTTTTTGAAAGGACAAGAGTA 57.068 32.000 5.52 0.00 32.24 2.59
205 206 7.758495 TGAACTTTTTGAAAGGACAAGAGTAC 58.242 34.615 5.52 0.00 32.24 2.73
206 207 7.392113 TGAACTTTTTGAAAGGACAAGAGTACA 59.608 33.333 0.00 0.00 32.24 2.90
207 208 7.881775 ACTTTTTGAAAGGACAAGAGTACAT 57.118 32.000 0.00 0.00 31.44 2.29
208 209 8.974060 ACTTTTTGAAAGGACAAGAGTACATA 57.026 30.769 0.00 0.00 31.44 2.29
209 210 8.837389 ACTTTTTGAAAGGACAAGAGTACATAC 58.163 33.333 0.00 0.00 31.44 2.39
210 211 7.739498 TTTTGAAAGGACAAGAGTACATACC 57.261 36.000 0.00 0.00 0.00 2.73
211 212 5.068234 TGAAAGGACAAGAGTACATACCG 57.932 43.478 0.00 0.00 0.00 4.02
212 213 4.525487 TGAAAGGACAAGAGTACATACCGT 59.475 41.667 0.00 0.00 0.00 4.83
213 214 5.711506 TGAAAGGACAAGAGTACATACCGTA 59.288 40.000 0.00 0.00 0.00 4.02
214 215 5.831702 AAGGACAAGAGTACATACCGTAG 57.168 43.478 0.00 0.00 0.00 3.51
215 216 3.631227 AGGACAAGAGTACATACCGTAGC 59.369 47.826 0.00 0.00 0.00 3.58
216 217 3.379372 GGACAAGAGTACATACCGTAGCA 59.621 47.826 0.00 0.00 0.00 3.49
217 218 4.142315 GGACAAGAGTACATACCGTAGCAA 60.142 45.833 0.00 0.00 0.00 3.91
218 219 5.395682 ACAAGAGTACATACCGTAGCAAA 57.604 39.130 0.00 0.00 0.00 3.68
219 220 5.786311 ACAAGAGTACATACCGTAGCAAAA 58.214 37.500 0.00 0.00 0.00 2.44
220 221 5.636543 ACAAGAGTACATACCGTAGCAAAAC 59.363 40.000 0.00 0.00 0.00 2.43
221 222 4.418392 AGAGTACATACCGTAGCAAAACG 58.582 43.478 0.00 0.00 42.49 3.60
253 254 7.639113 TTTTCCAAGAAAATCAGTACACACT 57.361 32.000 0.00 0.00 34.42 3.55
300 301 1.641577 AAAAGTGATCGAGCGGTAGC 58.358 50.000 0.00 0.00 45.58 3.58
312 313 2.332159 GGTAGCTAGCGACCGAGC 59.668 66.667 28.09 8.52 39.65 5.03
313 314 2.052060 GTAGCTAGCGACCGAGCG 60.052 66.667 16.36 0.00 43.47 5.03
314 315 3.277602 TAGCTAGCGACCGAGCGG 61.278 66.667 9.55 7.48 43.47 5.52
356 357 3.818787 CAGGCCCATGCAAGCGAC 61.819 66.667 0.00 0.00 40.13 5.19
360 361 4.170062 CCCATGCAAGCGACGCAG 62.170 66.667 23.70 15.06 43.88 5.18
378 379 4.980805 TGGGCGCCGTGTTCACTC 62.981 66.667 22.54 3.09 0.00 3.51
382 383 3.470567 CGCCGTGTTCACTCGCTC 61.471 66.667 1.53 0.00 0.00 5.03
383 384 3.112709 GCCGTGTTCACTCGCTCC 61.113 66.667 1.53 0.00 0.00 4.70
384 385 2.338620 CCGTGTTCACTCGCTCCA 59.661 61.111 1.53 0.00 0.00 3.86
385 386 2.022129 CCGTGTTCACTCGCTCCAC 61.022 63.158 1.53 0.00 0.00 4.02
386 387 2.022129 CGTGTTCACTCGCTCCACC 61.022 63.158 1.53 0.00 0.00 4.61
387 388 1.367840 GTGTTCACTCGCTCCACCT 59.632 57.895 0.00 0.00 0.00 4.00
388 389 0.667792 GTGTTCACTCGCTCCACCTC 60.668 60.000 0.00 0.00 0.00 3.85
389 390 0.827925 TGTTCACTCGCTCCACCTCT 60.828 55.000 0.00 0.00 0.00 3.69
390 391 0.389166 GTTCACTCGCTCCACCTCTG 60.389 60.000 0.00 0.00 0.00 3.35
391 392 2.125753 CACTCGCTCCACCTCTGC 60.126 66.667 0.00 0.00 0.00 4.26
392 393 2.601666 ACTCGCTCCACCTCTGCA 60.602 61.111 0.00 0.00 0.00 4.41
393 394 1.986757 ACTCGCTCCACCTCTGCAT 60.987 57.895 0.00 0.00 0.00 3.96
394 395 1.220206 CTCGCTCCACCTCTGCATT 59.780 57.895 0.00 0.00 0.00 3.56
395 396 1.078918 TCGCTCCACCTCTGCATTG 60.079 57.895 0.00 0.00 0.00 2.82
396 397 1.078918 CGCTCCACCTCTGCATTGA 60.079 57.895 0.00 0.00 0.00 2.57
397 398 0.463295 CGCTCCACCTCTGCATTGAT 60.463 55.000 0.00 0.00 0.00 2.57
398 399 1.022735 GCTCCACCTCTGCATTGATG 58.977 55.000 0.00 0.00 0.00 3.07
399 400 1.681166 GCTCCACCTCTGCATTGATGT 60.681 52.381 0.00 0.00 0.00 3.06
400 401 2.286872 CTCCACCTCTGCATTGATGTC 58.713 52.381 0.00 0.00 0.00 3.06
401 402 1.911357 TCCACCTCTGCATTGATGTCT 59.089 47.619 0.00 0.00 0.00 3.41
402 403 2.093288 TCCACCTCTGCATTGATGTCTC 60.093 50.000 0.00 0.00 0.00 3.36
403 404 2.093075 CCACCTCTGCATTGATGTCTCT 60.093 50.000 0.00 0.00 0.00 3.10
404 405 3.133542 CCACCTCTGCATTGATGTCTCTA 59.866 47.826 0.00 0.00 0.00 2.43
405 406 4.370049 CACCTCTGCATTGATGTCTCTAG 58.630 47.826 0.00 0.00 0.00 2.43
406 407 3.181467 ACCTCTGCATTGATGTCTCTAGC 60.181 47.826 0.00 0.00 0.00 3.42
407 408 3.069872 CCTCTGCATTGATGTCTCTAGCT 59.930 47.826 0.00 0.00 0.00 3.32
408 409 4.443175 CCTCTGCATTGATGTCTCTAGCTT 60.443 45.833 0.00 0.00 0.00 3.74
409 410 4.439968 TCTGCATTGATGTCTCTAGCTTG 58.560 43.478 0.00 0.00 0.00 4.01
410 411 4.081254 TCTGCATTGATGTCTCTAGCTTGT 60.081 41.667 0.00 0.00 0.00 3.16
418 419 5.814188 TGATGTCTCTAGCTTGTAGCAATTG 59.186 40.000 0.00 0.00 45.56 2.32
438 441 7.844355 GCAATTGCCATCCTTTACATGTAAAGA 60.844 37.037 40.85 30.87 43.16 2.52
488 493 3.786635 AGGCGTCAGTTCATCTTATCAC 58.213 45.455 0.00 0.00 0.00 3.06
532 542 2.113910 TTTTCGAAAAGCAACCGAGC 57.886 45.000 19.08 0.00 33.66 5.03
544 554 0.531200 AACCGAGCCTAGAAGAACCG 59.469 55.000 0.00 0.00 0.00 4.44
545 555 0.611340 ACCGAGCCTAGAAGAACCGT 60.611 55.000 0.00 0.00 0.00 4.83
546 556 1.340405 ACCGAGCCTAGAAGAACCGTA 60.340 52.381 0.00 0.00 0.00 4.02
547 557 1.065251 CCGAGCCTAGAAGAACCGTAC 59.935 57.143 0.00 0.00 0.00 3.67
548 558 1.065251 CGAGCCTAGAAGAACCGTACC 59.935 57.143 0.00 0.00 0.00 3.34
552 562 1.674962 CCTAGAAGAACCGTACCCTCG 59.325 57.143 0.00 0.00 0.00 4.63
579 597 5.765182 ACGCAAGGCTTTAGCATATCTTAAT 59.235 36.000 9.82 0.00 44.36 1.40
584 602 6.109359 AGGCTTTAGCATATCTTAATAGCCG 58.891 40.000 3.88 0.00 44.36 5.52
586 604 6.256757 GGCTTTAGCATATCTTAATAGCCGAG 59.743 42.308 3.88 0.00 44.36 4.63
597 615 0.595053 ATAGCCGAGACACGATTGCG 60.595 55.000 0.00 0.00 45.77 4.85
602 621 0.363512 CGAGACACGATTGCGACTTG 59.636 55.000 0.00 0.00 45.77 3.16
607 626 0.165944 CACGATTGCGACTTGGTTCC 59.834 55.000 0.00 0.00 41.64 3.62
620 639 2.116827 TGGTTCCACACAAGTTTCGT 57.883 45.000 0.00 0.00 0.00 3.85
631 650 6.402766 CCACACAAGTTTCGTCTTTCTTGTTA 60.403 38.462 6.66 0.00 45.01 2.41
653 672 3.861341 GCTGACAGCCCATACAAGA 57.139 52.632 17.01 0.00 34.48 3.02
721 740 7.064609 CGTGACATGTAAAGTGAATAAGGTGAT 59.935 37.037 0.00 0.00 0.00 3.06
739 758 8.814038 AAGGTGATTCATCTATAGCAAACTTT 57.186 30.769 0.00 0.00 0.00 2.66
851 873 6.988522 ACCTAACACAATGTACCAAAAATCC 58.011 36.000 0.00 0.00 0.00 3.01
941 963 9.535878 GGCTACTATAAATAGGCATGAAGTATC 57.464 37.037 0.00 0.00 43.06 2.24
954 976 6.073167 GGCATGAAGTATCAAGATCATCACAG 60.073 42.308 0.00 0.00 39.49 3.66
961 983 3.959293 TCAAGATCATCACAGGCACAAT 58.041 40.909 0.00 0.00 0.00 2.71
1029 1051 3.054508 CCTTCCTCATCTTTGCTCTCCTT 60.055 47.826 0.00 0.00 0.00 3.36
1075 1097 0.460284 ACAAATGGAGACTAGCCGCG 60.460 55.000 0.00 0.00 0.00 6.46
1177 1295 1.550327 TCCACAGCAACAACAACCAA 58.450 45.000 0.00 0.00 0.00 3.67
1178 1296 2.106566 TCCACAGCAACAACAACCAAT 58.893 42.857 0.00 0.00 0.00 3.16
1179 1297 2.499289 TCCACAGCAACAACAACCAATT 59.501 40.909 0.00 0.00 0.00 2.32
1180 1298 3.701542 TCCACAGCAACAACAACCAATTA 59.298 39.130 0.00 0.00 0.00 1.40
1183 1301 6.040955 TCCACAGCAACAACAACCAATTATTA 59.959 34.615 0.00 0.00 0.00 0.98
1184 1302 6.873076 CCACAGCAACAACAACCAATTATTAT 59.127 34.615 0.00 0.00 0.00 1.28
1187 1305 8.802267 ACAGCAACAACAACCAATTATTATACT 58.198 29.630 0.00 0.00 0.00 2.12
1223 1368 1.029408 TCGCAGCAACAACAACCAGT 61.029 50.000 0.00 0.00 0.00 4.00
1224 1369 0.179140 CGCAGCAACAACAACCAGTT 60.179 50.000 0.00 0.00 42.42 3.16
1225 1370 1.559831 GCAGCAACAACAACCAGTTC 58.440 50.000 0.00 0.00 38.74 3.01
1229 1377 1.802508 GCAACAACAACCAGTTCTGCC 60.803 52.381 0.00 0.00 38.94 4.85
1236 1384 1.447317 AACCAGTTCTGCCGCAACAG 61.447 55.000 0.00 0.00 39.12 3.16
1243 1391 3.547249 CTGCCGCAACAGCAACCAG 62.547 63.158 0.00 0.00 40.35 4.00
1244 1392 3.595758 GCCGCAACAGCAACCAGT 61.596 61.111 0.00 0.00 0.00 4.00
1245 1393 3.119193 CCGCAACAGCAACCAGTT 58.881 55.556 0.00 0.00 0.00 3.16
1249 1397 2.486203 CCGCAACAGCAACCAGTTATTA 59.514 45.455 0.00 0.00 0.00 0.98
1253 1602 5.064707 CGCAACAGCAACCAGTTATTATACT 59.935 40.000 0.00 0.00 0.00 2.12
1334 1876 4.682787 TCACAACAACAACAACAACAACA 58.317 34.783 0.00 0.00 0.00 3.33
1398 2115 2.834549 ACCACAACAACCACCATTTTCA 59.165 40.909 0.00 0.00 0.00 2.69
1414 2182 5.390356 CCATTTTCACAACAACAACAACCAC 60.390 40.000 0.00 0.00 0.00 4.16
1415 2183 3.305398 TTCACAACAACAACAACCACC 57.695 42.857 0.00 0.00 0.00 4.61
1416 2184 2.239400 TCACAACAACAACAACCACCA 58.761 42.857 0.00 0.00 0.00 4.17
1419 2187 3.999663 CACAACAACAACAACCACCATTT 59.000 39.130 0.00 0.00 0.00 2.32
1420 2188 4.453819 CACAACAACAACAACCACCATTTT 59.546 37.500 0.00 0.00 0.00 1.82
1421 2189 4.693095 ACAACAACAACAACCACCATTTTC 59.307 37.500 0.00 0.00 0.00 2.29
1422 2190 3.516615 ACAACAACAACCACCATTTTCG 58.483 40.909 0.00 0.00 0.00 3.46
1423 2191 2.217429 ACAACAACCACCATTTTCGC 57.783 45.000 0.00 0.00 0.00 4.70
1424 2192 1.478510 ACAACAACCACCATTTTCGCA 59.521 42.857 0.00 0.00 0.00 5.10
1425 2193 2.126467 CAACAACCACCATTTTCGCAG 58.874 47.619 0.00 0.00 0.00 5.18
1426 2194 0.031994 ACAACCACCATTTTCGCAGC 59.968 50.000 0.00 0.00 0.00 5.25
1427 2195 0.031857 CAACCACCATTTTCGCAGCA 59.968 50.000 0.00 0.00 0.00 4.41
1428 2196 0.314935 AACCACCATTTTCGCAGCAG 59.685 50.000 0.00 0.00 0.00 4.24
1429 2197 1.444895 CCACCATTTTCGCAGCAGC 60.445 57.895 0.00 0.00 37.42 5.25
1430 2198 1.286570 CACCATTTTCGCAGCAGCA 59.713 52.632 0.82 0.00 42.27 4.41
1431 2199 0.318869 CACCATTTTCGCAGCAGCAA 60.319 50.000 0.82 0.00 42.27 3.91
1432 2200 0.318955 ACCATTTTCGCAGCAGCAAC 60.319 50.000 0.82 0.00 42.27 4.17
1433 2201 0.318869 CCATTTTCGCAGCAGCAACA 60.319 50.000 0.82 0.00 42.27 3.33
1434 2202 1.489574 CATTTTCGCAGCAGCAACAA 58.510 45.000 0.82 0.00 42.27 2.83
1435 2203 1.190763 CATTTTCGCAGCAGCAACAAC 59.809 47.619 0.82 0.00 42.27 3.32
1436 2204 0.527385 TTTTCGCAGCAGCAACAACC 60.527 50.000 0.82 0.00 42.27 3.77
1437 2205 1.661498 TTTCGCAGCAGCAACAACCA 61.661 50.000 0.82 0.00 42.27 3.67
1438 2206 1.454572 TTCGCAGCAGCAACAACCAT 61.455 50.000 0.82 0.00 42.27 3.55
1439 2207 1.443194 CGCAGCAGCAACAACCATC 60.443 57.895 0.82 0.00 42.27 3.51
1440 2208 1.859427 CGCAGCAGCAACAACCATCT 61.859 55.000 0.82 0.00 42.27 2.90
1441 2209 0.316204 GCAGCAGCAACAACCATCTT 59.684 50.000 0.00 0.00 41.58 2.40
1477 2275 2.208132 TCCACAACAACACCAACAGT 57.792 45.000 0.00 0.00 0.00 3.55
1482 2280 2.894126 ACAACAACACCAACAGTTTCCA 59.106 40.909 0.00 0.00 0.00 3.53
1542 2340 1.203052 CAGCTAAACCCATGCAAGGTG 59.797 52.381 12.21 4.94 37.78 4.00
1551 2349 1.619654 CATGCAAGGTGTTCCTCCAA 58.380 50.000 0.00 0.00 44.35 3.53
1565 2363 0.035317 CTCCAACAGCAGTGTAGCCA 59.965 55.000 0.00 0.00 35.08 4.75
1679 2477 2.325393 ATCCCCGAACAATCCCGCTC 62.325 60.000 0.00 0.00 0.00 5.03
1790 2612 1.150536 GCCAAGGTGTCTCCCAACA 59.849 57.895 0.00 0.00 36.75 3.33
1815 2637 3.789858 CAGTCGCAGCAGCAGCAG 61.790 66.667 10.77 0.00 45.49 4.24
1853 2675 4.340617 TCTTTCCAACAACCTCAACAACT 58.659 39.130 0.00 0.00 0.00 3.16
1856 2681 4.223556 TCCAACAACCTCAACAACTACA 57.776 40.909 0.00 0.00 0.00 2.74
1857 2682 4.590918 TCCAACAACCTCAACAACTACAA 58.409 39.130 0.00 0.00 0.00 2.41
1858 2683 4.396790 TCCAACAACCTCAACAACTACAAC 59.603 41.667 0.00 0.00 0.00 3.32
1859 2684 4.156922 CCAACAACCTCAACAACTACAACA 59.843 41.667 0.00 0.00 0.00 3.33
1860 2685 5.336055 CCAACAACCTCAACAACTACAACAA 60.336 40.000 0.00 0.00 0.00 2.83
1861 2686 6.329496 CAACAACCTCAACAACTACAACAAT 58.671 36.000 0.00 0.00 0.00 2.71
1869 2694 5.067153 TCAACAACTACAACAATTGGGTCAG 59.933 40.000 10.83 4.31 34.12 3.51
1924 2755 1.561076 TCTTGCAGCCACACCAGATAT 59.439 47.619 0.00 0.00 0.00 1.63
2004 2835 2.716828 CGTGCCGTTGTACAGCTCG 61.717 63.158 13.28 13.28 33.28 5.03
2014 2845 4.437794 CGTTGTACAGCTCGACCACTATTA 60.438 45.833 8.15 0.00 0.00 0.98
2045 2876 0.540365 ATTGGCACTGGAGTTGGTGG 60.540 55.000 0.00 0.00 34.41 4.61
2064 2895 6.721318 TGGTGGCTACTGATAAGAAAAGATT 58.279 36.000 0.00 0.00 0.00 2.40
2235 3071 1.735571 ACAATGTTCATACCGGCGTTC 59.264 47.619 6.01 0.00 0.00 3.95
2249 3085 1.674611 GCGTTCTGTGGACGTCGATG 61.675 60.000 9.92 2.26 0.00 3.84
2306 3147 3.030652 GGTCACAAACCTGGTGCG 58.969 61.111 0.00 0.00 45.45 5.34
2422 3263 7.454260 ACAACTCTTTAATGGTTGGAGATTC 57.546 36.000 18.27 0.00 42.93 2.52
2423 3264 7.004086 ACAACTCTTTAATGGTTGGAGATTCA 58.996 34.615 18.27 0.00 42.93 2.57
2463 3310 4.698780 GGTTTGTATCTGGTTCCAACTACC 59.301 45.833 0.00 0.00 36.17 3.18
2469 3316 2.039746 TCTGGTTCCAACTACCACCATG 59.960 50.000 0.00 0.00 40.65 3.66
2506 3353 4.533222 CCACAACTGGTTTGATCGTTAAC 58.467 43.478 0.00 0.00 38.73 2.01
2510 3357 5.465724 ACAACTGGTTTGATCGTTAACTCTC 59.534 40.000 3.71 0.98 38.73 3.20
2519 3366 4.690748 TGATCGTTAACTCTCTTTGCTTGG 59.309 41.667 3.71 0.00 0.00 3.61
2555 3407 9.491675 AAATATGTTCATTGATTCTTTGCACAA 57.508 25.926 0.00 0.00 0.00 3.33
2557 3409 7.972832 ATGTTCATTGATTCTTTGCACAATT 57.027 28.000 0.00 0.00 31.85 2.32
2585 3444 5.410067 TGTCAAGAAAAAGGTCAGCTTTTG 58.590 37.500 15.20 4.03 34.66 2.44
2600 3459 3.510719 GCTTTTGCTTGAACTTCACACA 58.489 40.909 0.00 0.00 43.35 3.72
2601 3460 3.304293 GCTTTTGCTTGAACTTCACACAC 59.696 43.478 0.00 0.00 43.35 3.82
2602 3461 4.484236 CTTTTGCTTGAACTTCACACACA 58.516 39.130 0.00 0.00 0.00 3.72
2603 3462 3.485947 TTGCTTGAACTTCACACACAC 57.514 42.857 0.00 0.00 0.00 3.82
2613 3473 2.303163 TCACACACACACACCACTAC 57.697 50.000 0.00 0.00 0.00 2.73
2624 3484 7.386848 ACACACACACCACTACATAGTTAATTC 59.613 37.037 0.00 0.00 33.46 2.17
2641 3501 7.305474 AGTTAATTCGAAATAAGTTGCTGGTG 58.695 34.615 5.92 0.00 0.00 4.17
2667 3529 2.095461 CTAGACCAGCTAGCACAGTCA 58.905 52.381 24.71 14.40 40.15 3.41
2686 3632 4.194497 TGTGTGTGGGGAGGGGGA 62.194 66.667 0.00 0.00 0.00 4.81
2707 3653 4.083581 AGTTGTTGCATGCGTATTCTTC 57.916 40.909 14.09 0.00 0.00 2.87
2746 3896 5.689383 TGTTCTTTTGATGCTCTTACACC 57.311 39.130 0.00 0.00 0.00 4.16
2790 3941 4.445351 GAAAGCAAAATAAACAACGCAGC 58.555 39.130 0.00 0.00 0.00 5.25
2810 3961 5.819901 GCAGCTAGAAACCATAGAACTTGAT 59.180 40.000 0.00 0.00 0.00 2.57
2854 7514 4.141914 ACATCCTCCTCCTTACGTCATTTC 60.142 45.833 0.00 0.00 0.00 2.17
2889 7549 6.408320 GCAATAGCCCTCATGAGATCAGATAT 60.408 42.308 24.62 13.91 33.58 1.63
3008 7670 3.181451 ACATCCACGAGCATGTAATCCAT 60.181 43.478 0.00 0.00 31.20 3.41
3009 7671 3.111853 TCCACGAGCATGTAATCCATC 57.888 47.619 0.00 0.00 0.00 3.51
3010 7672 2.700371 TCCACGAGCATGTAATCCATCT 59.300 45.455 0.00 0.00 0.00 2.90
3029 7691 5.007430 CCATCTTATTGCAAGTAGAGCACTG 59.993 44.000 15.78 10.38 42.54 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.885934 TCGAAAAATAGTTCATCGAATTTGAAA 57.114 25.926 10.19 0.00 39.33 2.69
47 48 9.885934 TTCGAAAAATAGTTCATCGAATTTGAA 57.114 25.926 17.18 0.00 44.64 2.69
54 55 9.489393 CATTGAATTCGAAAAATAGTTCATCGA 57.511 29.630 0.00 8.96 40.39 3.59
55 56 9.489393 TCATTGAATTCGAAAAATAGTTCATCG 57.511 29.630 0.00 5.12 34.98 3.84
66 67 9.579768 TCAGAAAAAGTTCATTGAATTCGAAAA 57.420 25.926 0.00 0.00 36.09 2.29
67 68 9.579768 TTCAGAAAAAGTTCATTGAATTCGAAA 57.420 25.926 0.00 0.92 36.09 3.46
68 69 9.748708 ATTCAGAAAAAGTTCATTGAATTCGAA 57.251 25.926 0.00 0.00 36.19 3.71
69 70 9.748708 AATTCAGAAAAAGTTCATTGAATTCGA 57.251 25.926 1.78 0.00 40.80 3.71
70 71 9.999883 GAATTCAGAAAAAGTTCATTGAATTCG 57.000 29.630 18.41 0.75 44.68 3.34
71 72 9.999883 CGAATTCAGAAAAAGTTCATTGAATTC 57.000 29.630 20.71 20.71 46.71 2.17
72 73 9.748708 TCGAATTCAGAAAAAGTTCATTGAATT 57.251 25.926 6.22 12.68 43.89 2.17
73 74 9.918630 ATCGAATTCAGAAAAAGTTCATTGAAT 57.081 25.926 6.22 0.00 38.95 2.57
74 75 9.184062 CATCGAATTCAGAAAAAGTTCATTGAA 57.816 29.630 6.22 0.00 34.35 2.69
75 76 8.567104 TCATCGAATTCAGAAAAAGTTCATTGA 58.433 29.630 6.22 0.00 36.09 2.57
76 77 8.732413 TCATCGAATTCAGAAAAAGTTCATTG 57.268 30.769 6.22 0.00 36.09 2.82
77 78 9.185192 GTTCATCGAATTCAGAAAAAGTTCATT 57.815 29.630 6.22 0.00 36.09 2.57
78 79 8.571336 AGTTCATCGAATTCAGAAAAAGTTCAT 58.429 29.630 6.22 0.00 36.09 2.57
79 80 7.930217 AGTTCATCGAATTCAGAAAAAGTTCA 58.070 30.769 6.22 0.00 36.09 3.18
80 81 8.788409 AAGTTCATCGAATTCAGAAAAAGTTC 57.212 30.769 6.22 0.00 0.00 3.01
86 87 9.541724 CGAAATAAAGTTCATCGAATTCAGAAA 57.458 29.630 6.22 0.00 35.65 2.52
87 88 8.931775 TCGAAATAAAGTTCATCGAATTCAGAA 58.068 29.630 6.22 3.77 39.33 3.02
88 89 8.474006 TCGAAATAAAGTTCATCGAATTCAGA 57.526 30.769 6.22 4.46 39.33 3.27
95 96 9.489393 CATTGAATTCGAAATAAAGTTCATCGA 57.511 29.630 0.00 0.00 40.39 3.59
96 97 9.489393 TCATTGAATTCGAAATAAAGTTCATCG 57.511 29.630 0.00 1.49 34.98 3.84
107 108 8.853345 CGATCAAAAGTTCATTGAATTCGAAAT 58.147 29.630 0.00 0.00 39.70 2.17
108 109 8.073167 TCGATCAAAAGTTCATTGAATTCGAAA 58.927 29.630 0.00 0.00 41.52 3.46
109 110 7.580600 TCGATCAAAAGTTCATTGAATTCGAA 58.419 30.769 0.00 0.00 41.52 3.71
110 111 7.127917 TCGATCAAAAGTTCATTGAATTCGA 57.872 32.000 1.78 10.04 41.88 3.71
111 112 7.780253 TTCGATCAAAAGTTCATTGAATTCG 57.220 32.000 1.78 6.84 39.98 3.34
113 114 8.853345 CGAATTCGATCAAAAGTTCATTGAATT 58.147 29.630 23.29 12.96 40.82 2.17
114 115 8.236586 TCGAATTCGATCAAAAGTTCATTGAAT 58.763 29.630 25.96 0.00 44.22 2.57
115 116 7.580600 TCGAATTCGATCAAAAGTTCATTGAA 58.419 30.769 25.96 0.00 44.22 2.69
116 117 7.127917 TCGAATTCGATCAAAAGTTCATTGA 57.872 32.000 25.96 0.00 44.22 2.57
160 161 9.874205 AAGTTCATCAGAATTTGAAAAAGTTCA 57.126 25.926 0.00 0.00 39.77 3.18
169 170 9.316730 CCTTTCAAAAAGTTCATCAGAATTTGA 57.683 29.630 0.00 0.00 37.96 2.69
170 171 9.316730 TCCTTTCAAAAAGTTCATCAGAATTTG 57.683 29.630 0.00 0.00 34.41 2.32
171 172 9.317936 GTCCTTTCAAAAAGTTCATCAGAATTT 57.682 29.630 0.00 0.00 35.49 1.82
172 173 8.477256 TGTCCTTTCAAAAAGTTCATCAGAATT 58.523 29.630 0.00 0.00 35.92 2.17
173 174 8.010733 TGTCCTTTCAAAAAGTTCATCAGAAT 57.989 30.769 0.00 0.00 35.92 2.40
174 175 7.403312 TGTCCTTTCAAAAAGTTCATCAGAA 57.597 32.000 0.00 0.00 0.00 3.02
175 176 7.339212 TCTTGTCCTTTCAAAAAGTTCATCAGA 59.661 33.333 0.00 0.00 0.00 3.27
176 177 7.483307 TCTTGTCCTTTCAAAAAGTTCATCAG 58.517 34.615 0.00 0.00 0.00 2.90
177 178 7.122650 ACTCTTGTCCTTTCAAAAAGTTCATCA 59.877 33.333 0.00 0.00 0.00 3.07
178 179 7.484140 ACTCTTGTCCTTTCAAAAAGTTCATC 58.516 34.615 0.00 0.00 0.00 2.92
179 180 7.410120 ACTCTTGTCCTTTCAAAAAGTTCAT 57.590 32.000 0.00 0.00 0.00 2.57
180 181 6.834168 ACTCTTGTCCTTTCAAAAAGTTCA 57.166 33.333 0.00 0.00 0.00 3.18
181 182 7.758495 TGTACTCTTGTCCTTTCAAAAAGTTC 58.242 34.615 0.00 0.00 31.02 3.01
182 183 7.696992 TGTACTCTTGTCCTTTCAAAAAGTT 57.303 32.000 0.00 0.00 31.02 2.66
183 184 7.881775 ATGTACTCTTGTCCTTTCAAAAAGT 57.118 32.000 0.00 0.00 32.28 2.66
184 185 8.290325 GGTATGTACTCTTGTCCTTTCAAAAAG 58.710 37.037 0.00 0.00 0.00 2.27
185 186 7.041644 CGGTATGTACTCTTGTCCTTTCAAAAA 60.042 37.037 0.00 0.00 0.00 1.94
186 187 6.425721 CGGTATGTACTCTTGTCCTTTCAAAA 59.574 38.462 0.00 0.00 0.00 2.44
187 188 5.929992 CGGTATGTACTCTTGTCCTTTCAAA 59.070 40.000 0.00 0.00 0.00 2.69
188 189 5.011329 ACGGTATGTACTCTTGTCCTTTCAA 59.989 40.000 0.00 0.00 0.00 2.69
189 190 4.525487 ACGGTATGTACTCTTGTCCTTTCA 59.475 41.667 0.00 0.00 0.00 2.69
190 191 5.069501 ACGGTATGTACTCTTGTCCTTTC 57.930 43.478 0.00 0.00 0.00 2.62
191 192 5.393896 GCTACGGTATGTACTCTTGTCCTTT 60.394 44.000 0.00 0.00 0.00 3.11
192 193 4.097589 GCTACGGTATGTACTCTTGTCCTT 59.902 45.833 0.00 0.00 0.00 3.36
193 194 3.631227 GCTACGGTATGTACTCTTGTCCT 59.369 47.826 0.00 0.00 0.00 3.85
194 195 3.379372 TGCTACGGTATGTACTCTTGTCC 59.621 47.826 0.00 0.00 0.00 4.02
195 196 4.627611 TGCTACGGTATGTACTCTTGTC 57.372 45.455 0.00 0.00 0.00 3.18
196 197 5.395682 TTTGCTACGGTATGTACTCTTGT 57.604 39.130 0.00 0.00 0.00 3.16
197 198 5.220154 CGTTTTGCTACGGTATGTACTCTTG 60.220 44.000 0.00 0.00 37.86 3.02
198 199 4.860907 CGTTTTGCTACGGTATGTACTCTT 59.139 41.667 0.00 0.00 37.86 2.85
199 200 4.418392 CGTTTTGCTACGGTATGTACTCT 58.582 43.478 0.00 0.00 37.86 3.24
200 201 4.750172 CGTTTTGCTACGGTATGTACTC 57.250 45.455 0.00 0.00 37.86 2.59
228 229 8.062065 AGTGTGTACTGATTTTCTTGGAAAAA 57.938 30.769 9.07 0.00 35.34 1.94
229 230 7.639113 AGTGTGTACTGATTTTCTTGGAAAA 57.361 32.000 7.71 7.71 35.34 2.29
280 281 2.000447 GCTACCGCTCGATCACTTTTT 59.000 47.619 0.00 0.00 0.00 1.94
281 282 1.204941 AGCTACCGCTCGATCACTTTT 59.795 47.619 0.00 0.00 45.15 2.27
282 283 0.818296 AGCTACCGCTCGATCACTTT 59.182 50.000 0.00 0.00 45.15 2.66
283 284 1.604755 CTAGCTACCGCTCGATCACTT 59.395 52.381 0.00 0.00 45.15 3.16
284 285 1.231221 CTAGCTACCGCTCGATCACT 58.769 55.000 0.00 0.00 45.15 3.41
285 286 0.386226 GCTAGCTACCGCTCGATCAC 60.386 60.000 7.70 0.00 45.15 3.06
286 287 1.842698 CGCTAGCTACCGCTCGATCA 61.843 60.000 13.93 0.00 45.15 2.92
287 288 1.154376 CGCTAGCTACCGCTCGATC 60.154 63.158 13.93 0.00 45.15 3.69
288 289 1.597302 TCGCTAGCTACCGCTCGAT 60.597 57.895 13.93 0.00 45.15 3.59
289 290 2.202974 TCGCTAGCTACCGCTCGA 60.203 61.111 13.93 0.00 45.15 4.04
290 291 2.052060 GTCGCTAGCTACCGCTCG 60.052 66.667 13.93 0.00 45.15 5.03
291 292 2.332159 GGTCGCTAGCTACCGCTC 59.668 66.667 21.38 0.43 45.15 5.03
295 296 2.332159 GCTCGGTCGCTAGCTACC 59.668 66.667 24.91 24.91 35.80 3.18
296 297 2.052060 CGCTCGGTCGCTAGCTAC 60.052 66.667 13.93 12.28 36.56 3.58
297 298 3.277602 CCGCTCGGTCGCTAGCTA 61.278 66.667 13.93 0.00 36.56 3.32
315 316 4.126390 CAACGCTCGCTGCTGTCG 62.126 66.667 0.00 0.39 40.11 4.35
316 317 4.436448 GCAACGCTCGCTGCTGTC 62.436 66.667 10.01 0.00 40.11 3.51
317 318 4.976925 AGCAACGCTCGCTGCTGT 62.977 61.111 17.76 0.00 44.61 4.40
339 340 3.818787 GTCGCTTGCATGGGCCTG 61.819 66.667 4.53 1.41 40.13 4.85
343 344 4.170062 CTGCGTCGCTTGCATGGG 62.170 66.667 19.50 10.06 42.32 4.00
344 345 3.425713 ACTGCGTCGCTTGCATGG 61.426 61.111 19.50 2.69 42.32 3.66
345 346 2.202260 CACTGCGTCGCTTGCATG 60.202 61.111 19.50 5.65 42.32 4.06
346 347 3.425713 CCACTGCGTCGCTTGCAT 61.426 61.111 19.50 0.00 42.32 3.96
361 362 4.980805 GAGTGAACACGGCGCCCA 62.981 66.667 23.46 9.94 36.20 5.36
365 366 3.470567 GAGCGAGTGAACACGGCG 61.471 66.667 4.80 4.80 39.46 6.46
366 367 3.112709 GGAGCGAGTGAACACGGC 61.113 66.667 13.15 13.15 36.40 5.68
367 368 2.022129 GTGGAGCGAGTGAACACGG 61.022 63.158 2.60 0.00 36.20 4.94
368 369 2.022129 GGTGGAGCGAGTGAACACG 61.022 63.158 0.00 0.00 36.20 4.49
369 370 0.667792 GAGGTGGAGCGAGTGAACAC 60.668 60.000 0.00 0.00 0.00 3.32
370 371 0.827925 AGAGGTGGAGCGAGTGAACA 60.828 55.000 0.00 0.00 0.00 3.18
371 372 0.389166 CAGAGGTGGAGCGAGTGAAC 60.389 60.000 0.00 0.00 0.00 3.18
372 373 1.967535 CAGAGGTGGAGCGAGTGAA 59.032 57.895 0.00 0.00 0.00 3.18
373 374 2.640302 GCAGAGGTGGAGCGAGTGA 61.640 63.158 0.00 0.00 0.00 3.41
374 375 2.125753 GCAGAGGTGGAGCGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
375 376 1.548357 AATGCAGAGGTGGAGCGAGT 61.548 55.000 0.00 0.00 0.00 4.18
376 377 1.088340 CAATGCAGAGGTGGAGCGAG 61.088 60.000 0.00 0.00 0.00 5.03
377 378 1.078918 CAATGCAGAGGTGGAGCGA 60.079 57.895 0.00 0.00 0.00 4.93
378 379 0.463295 ATCAATGCAGAGGTGGAGCG 60.463 55.000 0.00 0.00 0.00 5.03
379 380 1.022735 CATCAATGCAGAGGTGGAGC 58.977 55.000 0.00 0.00 0.00 4.70
380 381 2.093075 AGACATCAATGCAGAGGTGGAG 60.093 50.000 0.00 0.00 31.94 3.86
381 382 1.911357 AGACATCAATGCAGAGGTGGA 59.089 47.619 0.00 0.00 31.94 4.02
382 383 2.093075 AGAGACATCAATGCAGAGGTGG 60.093 50.000 0.00 0.00 31.94 4.61
383 384 3.263489 AGAGACATCAATGCAGAGGTG 57.737 47.619 0.00 0.00 31.94 4.00
384 385 3.181467 GCTAGAGACATCAATGCAGAGGT 60.181 47.826 0.00 0.00 34.89 3.85
385 386 3.069872 AGCTAGAGACATCAATGCAGAGG 59.930 47.826 0.00 0.00 0.00 3.69
386 387 4.325028 AGCTAGAGACATCAATGCAGAG 57.675 45.455 0.00 0.00 0.00 3.35
387 388 4.081254 ACAAGCTAGAGACATCAATGCAGA 60.081 41.667 0.00 0.00 0.00 4.26
388 389 4.190001 ACAAGCTAGAGACATCAATGCAG 58.810 43.478 0.00 0.00 0.00 4.41
389 390 4.212143 ACAAGCTAGAGACATCAATGCA 57.788 40.909 0.00 0.00 0.00 3.96
390 391 4.210955 GCTACAAGCTAGAGACATCAATGC 59.789 45.833 0.00 0.00 38.45 3.56
391 392 5.354767 TGCTACAAGCTAGAGACATCAATG 58.645 41.667 0.00 0.00 42.97 2.82
392 393 5.604758 TGCTACAAGCTAGAGACATCAAT 57.395 39.130 0.00 0.00 42.97 2.57
393 394 5.405935 TTGCTACAAGCTAGAGACATCAA 57.594 39.130 0.00 0.00 42.97 2.57
394 395 5.604758 ATTGCTACAAGCTAGAGACATCA 57.395 39.130 0.00 0.00 42.97 3.07
395 396 5.277250 GCAATTGCTACAAGCTAGAGACATC 60.277 44.000 23.21 0.00 42.97 3.06
396 397 4.574013 GCAATTGCTACAAGCTAGAGACAT 59.426 41.667 23.21 0.00 42.97 3.06
397 398 3.935203 GCAATTGCTACAAGCTAGAGACA 59.065 43.478 23.21 0.00 42.97 3.41
398 399 3.311048 GGCAATTGCTACAAGCTAGAGAC 59.689 47.826 28.42 4.20 42.97 3.36
399 400 3.055167 TGGCAATTGCTACAAGCTAGAGA 60.055 43.478 28.42 0.00 42.97 3.10
400 401 3.273434 TGGCAATTGCTACAAGCTAGAG 58.727 45.455 28.42 0.00 42.97 2.43
401 402 3.348647 TGGCAATTGCTACAAGCTAGA 57.651 42.857 28.42 0.00 42.97 2.43
402 403 3.004106 GGATGGCAATTGCTACAAGCTAG 59.996 47.826 28.42 0.00 42.97 3.42
403 404 2.951642 GGATGGCAATTGCTACAAGCTA 59.048 45.455 28.42 0.00 42.97 3.32
404 405 1.753073 GGATGGCAATTGCTACAAGCT 59.247 47.619 28.42 8.48 42.97 3.74
405 406 1.753073 AGGATGGCAATTGCTACAAGC 59.247 47.619 28.42 14.76 42.82 4.01
406 407 4.460948 AAAGGATGGCAATTGCTACAAG 57.539 40.909 28.42 0.00 41.70 3.16
407 408 4.769488 TGTAAAGGATGGCAATTGCTACAA 59.231 37.500 28.42 13.21 41.70 2.41
408 409 4.339748 TGTAAAGGATGGCAATTGCTACA 58.660 39.130 28.42 22.22 41.70 2.74
409 410 4.981806 TGTAAAGGATGGCAATTGCTAC 57.018 40.909 28.42 20.15 41.70 3.58
410 411 4.955450 ACATGTAAAGGATGGCAATTGCTA 59.045 37.500 28.42 24.19 41.70 3.49
438 441 4.579340 GCATGACATGACTCATCAAATCCT 59.421 41.667 19.76 0.00 38.69 3.24
440 443 5.527951 AGAGCATGACATGACTCATCAAATC 59.472 40.000 27.07 10.54 38.69 2.17
444 447 5.803237 ATAGAGCATGACATGACTCATCA 57.197 39.130 27.07 18.03 39.83 3.07
516 523 0.319083 TAGGCTCGGTTGCTTTTCGA 59.681 50.000 0.00 0.00 0.00 3.71
532 542 1.674962 CGAGGGTACGGTTCTTCTAGG 59.325 57.143 0.00 0.00 0.00 3.02
544 554 1.445582 CCTTGCGTGTCGAGGGTAC 60.446 63.158 0.00 0.00 41.85 3.34
545 555 2.967397 CCTTGCGTGTCGAGGGTA 59.033 61.111 0.00 0.00 41.85 3.69
546 556 4.681978 GCCTTGCGTGTCGAGGGT 62.682 66.667 0.00 0.00 45.10 4.34
547 557 3.883744 AAGCCTTGCGTGTCGAGGG 62.884 63.158 0.00 0.00 45.10 4.30
552 562 0.804989 ATGCTAAAGCCTTGCGTGTC 59.195 50.000 0.00 0.00 41.18 3.67
579 597 1.226575 CGCAATCGTGTCTCGGCTA 60.227 57.895 0.00 0.00 40.32 3.93
584 602 0.716108 CCAAGTCGCAATCGTGTCTC 59.284 55.000 0.00 0.00 36.96 3.36
586 604 0.865769 AACCAAGTCGCAATCGTGTC 59.134 50.000 0.00 0.00 36.96 3.67
602 621 2.285977 AGACGAAACTTGTGTGGAACC 58.714 47.619 0.00 0.00 34.36 3.62
607 626 4.969816 ACAAGAAAGACGAAACTTGTGTG 58.030 39.130 0.00 7.06 46.87 3.82
618 637 4.213270 TGTCAGCCATTAACAAGAAAGACG 59.787 41.667 0.00 0.00 0.00 4.18
620 639 4.216257 GCTGTCAGCCATTAACAAGAAAGA 59.784 41.667 14.27 0.00 34.48 2.52
645 664 5.631026 CAACCGAGTTTGGAATCTTGTATG 58.369 41.667 0.00 0.00 0.00 2.39
653 672 3.132111 ACTTTTGCAACCGAGTTTGGAAT 59.868 39.130 0.00 0.00 36.77 3.01
890 912 3.441922 GGCACCATCTCTTTCCTTCTTTC 59.558 47.826 0.00 0.00 0.00 2.62
941 963 3.692593 TGATTGTGCCTGTGATGATCTTG 59.307 43.478 0.00 0.00 0.00 3.02
954 976 2.738314 GCTTGGTTTTGATGATTGTGCC 59.262 45.455 0.00 0.00 0.00 5.01
961 983 7.759489 AACTAGTATTGCTTGGTTTTGATGA 57.241 32.000 0.00 0.00 0.00 2.92
1180 1298 7.701924 CGAAAATGGTGATTGTTGCAGTATAAT 59.298 33.333 0.00 0.00 0.00 1.28
1183 1301 5.401550 CGAAAATGGTGATTGTTGCAGTAT 58.598 37.500 0.00 0.00 0.00 2.12
1184 1302 4.793071 CGAAAATGGTGATTGTTGCAGTA 58.207 39.130 0.00 0.00 0.00 2.74
1187 1305 2.223900 TGCGAAAATGGTGATTGTTGCA 60.224 40.909 0.00 0.00 42.01 4.08
1195 1340 1.028130 TGTTGCTGCGAAAATGGTGA 58.972 45.000 0.00 0.00 0.00 4.02
1223 1368 2.721231 GTTGCTGTTGCGGCAGAA 59.279 55.556 1.67 0.00 46.84 3.02
1224 1369 3.286751 GGTTGCTGTTGCGGCAGA 61.287 61.111 1.67 0.00 46.84 4.26
1225 1370 3.547249 CTGGTTGCTGTTGCGGCAG 62.547 63.158 1.67 3.30 46.84 4.85
1229 1377 2.704725 AATAACTGGTTGCTGTTGCG 57.295 45.000 0.00 0.00 43.34 4.85
1236 1384 6.189677 TGTTGCAGTATAATAACTGGTTGC 57.810 37.500 6.17 0.00 45.75 4.17
1243 1391 6.503589 TGGTGGTTGTTGCAGTATAATAAC 57.496 37.500 0.00 0.00 0.00 1.89
1244 1392 7.710676 AATGGTGGTTGTTGCAGTATAATAA 57.289 32.000 0.00 0.00 0.00 1.40
1245 1393 7.710676 AAATGGTGGTTGTTGCAGTATAATA 57.289 32.000 0.00 0.00 0.00 0.98
1249 1397 4.558496 CGAAAATGGTGGTTGTTGCAGTAT 60.558 41.667 0.00 0.00 0.00 2.12
1253 1602 1.804372 GCGAAAATGGTGGTTGTTGCA 60.804 47.619 0.00 0.00 0.00 4.08
1334 1876 3.929610 CGAAAATGGTGGTTGTTGTTGTT 59.070 39.130 0.00 0.00 0.00 2.83
1398 2115 3.971245 AATGGTGGTTGTTGTTGTTGT 57.029 38.095 0.00 0.00 0.00 3.32
1414 2182 0.318869 TGTTGCTGCTGCGAAAATGG 60.319 50.000 7.14 0.00 43.34 3.16
1415 2183 1.190763 GTTGTTGCTGCTGCGAAAATG 59.809 47.619 11.26 0.00 43.34 2.32
1416 2184 1.490621 GTTGTTGCTGCTGCGAAAAT 58.509 45.000 11.26 0.00 43.34 1.82
1419 2187 1.454572 ATGGTTGTTGCTGCTGCGAA 61.455 50.000 7.14 1.98 43.34 4.70
1420 2188 1.855213 GATGGTTGTTGCTGCTGCGA 61.855 55.000 11.21 6.22 43.34 5.10
1421 2189 1.443194 GATGGTTGTTGCTGCTGCG 60.443 57.895 11.21 0.00 43.34 5.18
1422 2190 0.316204 AAGATGGTTGTTGCTGCTGC 59.684 50.000 8.89 8.89 40.20 5.25
1423 2191 1.610038 TGAAGATGGTTGTTGCTGCTG 59.390 47.619 0.00 0.00 0.00 4.41
1424 2192 1.610522 GTGAAGATGGTTGTTGCTGCT 59.389 47.619 0.00 0.00 0.00 4.24
1425 2193 1.337703 TGTGAAGATGGTTGTTGCTGC 59.662 47.619 0.00 0.00 0.00 5.25
1426 2194 3.181488 TGTTGTGAAGATGGTTGTTGCTG 60.181 43.478 0.00 0.00 0.00 4.41
1427 2195 3.023119 TGTTGTGAAGATGGTTGTTGCT 58.977 40.909 0.00 0.00 0.00 3.91
1428 2196 3.435105 TGTTGTGAAGATGGTTGTTGC 57.565 42.857 0.00 0.00 0.00 4.17
1429 2197 4.111916 GGTTGTTGTGAAGATGGTTGTTG 58.888 43.478 0.00 0.00 0.00 3.33
1430 2198 3.766591 TGGTTGTTGTGAAGATGGTTGTT 59.233 39.130 0.00 0.00 0.00 2.83
1431 2199 3.130340 GTGGTTGTTGTGAAGATGGTTGT 59.870 43.478 0.00 0.00 0.00 3.32
1432 2200 3.490761 GGTGGTTGTTGTGAAGATGGTTG 60.491 47.826 0.00 0.00 0.00 3.77
1433 2201 2.693074 GGTGGTTGTTGTGAAGATGGTT 59.307 45.455 0.00 0.00 0.00 3.67
1434 2202 2.091885 AGGTGGTTGTTGTGAAGATGGT 60.092 45.455 0.00 0.00 0.00 3.55
1435 2203 2.586425 AGGTGGTTGTTGTGAAGATGG 58.414 47.619 0.00 0.00 0.00 3.51
1436 2204 4.654091 AAAGGTGGTTGTTGTGAAGATG 57.346 40.909 0.00 0.00 0.00 2.90
1437 2205 4.099419 GGAAAAGGTGGTTGTTGTGAAGAT 59.901 41.667 0.00 0.00 0.00 2.40
1438 2206 3.445805 GGAAAAGGTGGTTGTTGTGAAGA 59.554 43.478 0.00 0.00 0.00 2.87
1439 2207 3.194542 TGGAAAAGGTGGTTGTTGTGAAG 59.805 43.478 0.00 0.00 0.00 3.02
1440 2208 3.056465 GTGGAAAAGGTGGTTGTTGTGAA 60.056 43.478 0.00 0.00 0.00 3.18
1441 2209 2.494073 GTGGAAAAGGTGGTTGTTGTGA 59.506 45.455 0.00 0.00 0.00 3.58
1477 2275 3.772025 ACAGGGATTTGTTGTTGTGGAAA 59.228 39.130 0.00 0.00 0.00 3.13
1542 2340 2.417719 CTACACTGCTGTTGGAGGAAC 58.582 52.381 0.00 0.00 35.84 3.62
1551 2349 0.321919 CCACATGGCTACACTGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
1565 2363 1.209898 CGTTGCGACATTGCCACAT 59.790 52.632 4.64 0.00 31.29 3.21
1608 2406 3.603532 CATCACATGGCAACTACTCTGT 58.396 45.455 0.00 0.00 37.61 3.41
1699 2497 3.386078 TCTTGCAGGATGATGGAGTAGAC 59.614 47.826 0.00 0.00 39.69 2.59
1790 2612 2.974698 GCTGCGACTGCTGTTGGT 60.975 61.111 12.43 0.00 43.34 3.67
1813 2635 0.861837 GAACACTGTCCGAGTTGCTG 59.138 55.000 0.00 0.00 29.75 4.41
1814 2636 0.753262 AGAACACTGTCCGAGTTGCT 59.247 50.000 0.00 0.00 29.75 3.91
1815 2637 1.583054 AAGAACACTGTCCGAGTTGC 58.417 50.000 0.00 0.00 29.75 4.17
1816 2638 2.544267 GGAAAGAACACTGTCCGAGTTG 59.456 50.000 0.00 0.00 29.68 3.16
1817 2639 2.169769 TGGAAAGAACACTGTCCGAGTT 59.830 45.455 0.00 0.00 40.07 3.01
1818 2640 1.760613 TGGAAAGAACACTGTCCGAGT 59.239 47.619 0.00 0.00 40.07 4.18
1853 2675 1.885887 GCTGCTGACCCAATTGTTGTA 59.114 47.619 4.43 0.00 0.00 2.41
1856 2681 0.178953 AGGCTGCTGACCCAATTGTT 60.179 50.000 4.43 0.00 0.00 2.83
1857 2682 0.610232 GAGGCTGCTGACCCAATTGT 60.610 55.000 4.43 0.00 0.00 2.71
1858 2683 0.609957 TGAGGCTGCTGACCCAATTG 60.610 55.000 0.00 0.00 0.00 2.32
1859 2684 0.112995 TTGAGGCTGCTGACCCAATT 59.887 50.000 0.00 0.00 0.00 2.32
1860 2685 0.610232 GTTGAGGCTGCTGACCCAAT 60.610 55.000 0.00 0.00 0.00 3.16
1861 2686 1.228245 GTTGAGGCTGCTGACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1869 2694 1.024271 TCTGTTGTTGTTGAGGCTGC 58.976 50.000 0.00 0.00 0.00 5.25
1901 2732 1.350684 TCTGGTGTGGCTGCAAGAATA 59.649 47.619 0.50 0.00 34.07 1.75
1902 2733 0.111061 TCTGGTGTGGCTGCAAGAAT 59.889 50.000 0.50 0.00 34.07 2.40
1905 2736 1.945394 GATATCTGGTGTGGCTGCAAG 59.055 52.381 0.50 0.00 0.00 4.01
1924 2755 9.324269 AATGGAAGTCATCACCTCAAGTTGAGA 62.324 40.741 30.41 14.17 39.95 3.27
2004 2835 4.136796 TGCTGAATGGCATAATAGTGGTC 58.863 43.478 0.00 0.00 37.29 4.02
2026 2857 0.540365 CCACCAACTCCAGTGCCAAT 60.540 55.000 0.00 0.00 32.48 3.16
2081 2912 4.029861 CGACTAAACAACGGTGATCTAACG 59.970 45.833 7.88 2.28 0.00 3.18
2083 2914 5.375417 TCGACTAAACAACGGTGATCTAA 57.625 39.130 7.88 0.00 0.00 2.10
2084 2915 5.337554 CATCGACTAAACAACGGTGATCTA 58.662 41.667 7.88 0.00 39.98 1.98
2085 2916 3.928727 TCGACTAAACAACGGTGATCT 57.071 42.857 7.88 0.00 0.00 2.75
2235 3071 2.725644 GTCACATCGACGTCCACAG 58.274 57.895 10.58 0.03 34.19 3.66
2249 3085 2.154462 ACTTGCAAGCATGGTAGTCAC 58.846 47.619 26.27 0.00 0.00 3.67
2378 3219 6.204882 AGTTGTATGTTAGTCCTTGCTTCAAC 59.795 38.462 0.00 0.00 0.00 3.18
2379 3220 6.296026 AGTTGTATGTTAGTCCTTGCTTCAA 58.704 36.000 0.00 0.00 0.00 2.69
2463 3310 3.067106 GTTGTCACTGTAGACCATGGTG 58.933 50.000 25.52 10.16 37.73 4.17
2469 3316 2.870411 GTTGTGGTTGTCACTGTAGACC 59.130 50.000 7.56 0.00 46.20 3.85
2497 3344 4.691216 ACCAAGCAAAGAGAGTTAACGATC 59.309 41.667 0.00 2.59 0.00 3.69
2534 3386 7.789273 AAATTGTGCAAAGAATCAATGAACA 57.211 28.000 0.00 0.00 30.77 3.18
2585 3444 2.161410 TGTGTGTGTGTGAAGTTCAAGC 59.839 45.455 7.25 4.14 0.00 4.01
2599 3458 7.411480 CGAATTAACTATGTAGTGGTGTGTGTG 60.411 40.741 0.00 0.00 36.50 3.82
2600 3459 6.588756 CGAATTAACTATGTAGTGGTGTGTGT 59.411 38.462 0.00 0.00 36.50 3.72
2601 3460 6.809689 TCGAATTAACTATGTAGTGGTGTGTG 59.190 38.462 0.00 0.00 36.50 3.82
2602 3461 6.927416 TCGAATTAACTATGTAGTGGTGTGT 58.073 36.000 0.00 0.00 36.50 3.72
2603 3462 7.821595 TTCGAATTAACTATGTAGTGGTGTG 57.178 36.000 0.00 0.00 36.50 3.82
2613 3473 9.438291 CCAGCAACTTATTTCGAATTAACTATG 57.562 33.333 0.00 4.90 0.00 2.23
2624 3484 4.437390 GGACATCACCAGCAACTTATTTCG 60.437 45.833 0.00 0.00 0.00 3.46
2641 3501 2.311463 TGCTAGCTGGTCTAGGACATC 58.689 52.381 17.23 0.00 43.95 3.06
2667 3529 2.854032 CCCCTCCCCACACACACT 60.854 66.667 0.00 0.00 0.00 3.55
2686 3632 3.424829 CGAAGAATACGCATGCAACAACT 60.425 43.478 19.57 8.11 0.00 3.16
2707 3653 8.765844 CAAAAGAACAAAATAAAATAATGCGCG 58.234 29.630 0.00 0.00 0.00 6.86
2743 3891 7.035004 CCATCAAGTAAAAATGTGGTATGGTG 58.965 38.462 0.00 0.00 0.00 4.17
2746 3896 9.357652 CTTTCCATCAAGTAAAAATGTGGTATG 57.642 33.333 0.00 0.00 0.00 2.39
2781 3931 2.185004 ATGGTTTCTAGCTGCGTTGT 57.815 45.000 0.00 0.00 0.00 3.32
2790 3941 7.928706 CCCAGTATCAAGTTCTATGGTTTCTAG 59.071 40.741 0.00 0.00 0.00 2.43
2810 3961 2.502130 TGAAGTTGACACACACCCAGTA 59.498 45.455 0.00 0.00 0.00 2.74
2854 7514 3.448301 TGAGGGCTATTGCTTTCCAATTG 59.552 43.478 0.00 0.00 41.29 2.32
2889 7549 9.814899 CTTGTTTATTTTGGCATTATGTATGGA 57.185 29.630 0.00 0.00 34.66 3.41
2899 7559 5.490159 CCATCACCTTGTTTATTTTGGCAT 58.510 37.500 0.00 0.00 0.00 4.40
3008 7670 5.152623 ACAGTGCTCTACTTGCAATAAGA 57.847 39.130 0.00 5.14 42.41 2.10
3009 7671 7.545362 AATACAGTGCTCTACTTGCAATAAG 57.455 36.000 0.00 0.18 42.41 1.73
3010 7672 9.045223 CATAATACAGTGCTCTACTTGCAATAA 57.955 33.333 0.00 0.00 42.41 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.