Multiple sequence alignment - TraesCS1D01G009300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G009300 chr1D 100.000 3455 0 0 1 3455 4880797 4877343 0.000000e+00 6381.0
1 TraesCS1D01G009300 chr1D 84.040 2475 343 30 995 3455 5135216 5132780 0.000000e+00 2335.0
2 TraesCS1D01G009300 chr1D 84.645 1791 227 26 990 2751 3175960 3177731 0.000000e+00 1740.0
3 TraesCS1D01G009300 chr1D 86.667 660 80 7 2801 3455 4198952 4198296 0.000000e+00 725.0
4 TraesCS1D01G009300 chr1D 97.368 114 3 0 1 114 4912525 4912412 9.780000e-46 195.0
5 TraesCS1D01G009300 chr1D 100.000 35 0 0 2389 2423 4878341 4878307 8.000000e-07 65.8
6 TraesCS1D01G009300 chr1A 96.013 2985 98 8 477 3455 5650570 5647601 0.000000e+00 4833.0
7 TraesCS1D01G009300 chr1A 84.295 2496 333 38 979 3455 5506003 5503548 0.000000e+00 2383.0
8 TraesCS1D01G009300 chr1A 83.513 2505 346 42 977 3455 6341277 6338814 0.000000e+00 2276.0
9 TraesCS1D01G009300 chr1A 83.049 2224 312 44 979 3180 4497747 4499927 0.000000e+00 1958.0
10 TraesCS1D01G009300 chr1A 76.224 143 19 6 2625 2752 5525404 5525262 1.040000e-05 62.1
11 TraesCS1D01G009300 chrUn 82.448 2957 392 63 559 3455 117300997 117298108 0.000000e+00 2468.0
12 TraesCS1D01G009300 chr1B 83.713 2505 346 40 975 3455 6487767 6485301 0.000000e+00 2309.0
13 TraesCS1D01G009300 chr1B 83.700 2497 320 49 983 3452 7637389 7634953 0.000000e+00 2276.0
14 TraesCS1D01G009300 chr1B 83.556 2469 361 29 995 3454 7256967 7254535 0.000000e+00 2268.0
15 TraesCS1D01G009300 chr1B 82.638 2517 365 41 975 3455 5694895 5697375 0.000000e+00 2161.0
16 TraesCS1D01G009300 chr1B 81.038 2621 390 57 559 3123 5949563 5952132 0.000000e+00 1988.0
17 TraesCS1D01G009300 chr1B 83.034 1951 249 45 839 2750 5985791 5987698 0.000000e+00 1694.0
18 TraesCS1D01G009300 chr1B 83.113 1895 265 32 911 2778 7289976 7291842 0.000000e+00 1676.0
19 TraesCS1D01G009300 chr1B 83.956 1714 242 17 988 2692 6849575 6847886 0.000000e+00 1611.0
20 TraesCS1D01G009300 chr1B 84.420 982 125 23 2481 3455 29937968 29937008 0.000000e+00 941.0
21 TraesCS1D01G009300 chr1B 94.737 114 6 0 1 114 522054825 522054712 9.850000e-41 178.0
22 TraesCS1D01G009300 chr1B 92.982 114 8 0 1 114 522027387 522027274 2.130000e-37 167.0
23 TraesCS1D01G009300 chr1B 83.439 157 22 4 265 418 5846470 5846625 3.590000e-30 143.0
24 TraesCS1D01G009300 chr6A 95.455 110 5 0 5 114 610941323 610941214 3.540000e-40 176.0
25 TraesCS1D01G009300 chr6A 93.860 114 7 0 5 118 610936351 610936238 4.580000e-39 172.0
26 TraesCS1D01G009300 chr2B 91.071 112 10 0 4 115 736393284 736393173 5.970000e-33 152.0
27 TraesCS1D01G009300 chr2B 91.743 109 9 0 4 112 736398262 736398154 5.970000e-33 152.0
28 TraesCS1D01G009300 chr5B 90.351 114 11 0 1 114 644905645 644905758 2.150000e-32 150.0
29 TraesCS1D01G009300 chr3B 88.596 114 9 3 1 112 42760540 42760429 6.010000e-28 135.0
30 TraesCS1D01G009300 chr7A 89.189 111 6 1 4 114 735947893 735947789 2.160000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G009300 chr1D 4877343 4880797 3454 True 3223.4 6381 100.000 1 3455 2 chr1D.!!$R4 3454
1 TraesCS1D01G009300 chr1D 5132780 5135216 2436 True 2335.0 2335 84.040 995 3455 1 chr1D.!!$R3 2460
2 TraesCS1D01G009300 chr1D 3175960 3177731 1771 False 1740.0 1740 84.645 990 2751 1 chr1D.!!$F1 1761
3 TraesCS1D01G009300 chr1D 4198296 4198952 656 True 725.0 725 86.667 2801 3455 1 chr1D.!!$R1 654
4 TraesCS1D01G009300 chr1A 5647601 5650570 2969 True 4833.0 4833 96.013 477 3455 1 chr1A.!!$R3 2978
5 TraesCS1D01G009300 chr1A 5503548 5506003 2455 True 2383.0 2383 84.295 979 3455 1 chr1A.!!$R1 2476
6 TraesCS1D01G009300 chr1A 6338814 6341277 2463 True 2276.0 2276 83.513 977 3455 1 chr1A.!!$R4 2478
7 TraesCS1D01G009300 chr1A 4497747 4499927 2180 False 1958.0 1958 83.049 979 3180 1 chr1A.!!$F1 2201
8 TraesCS1D01G009300 chrUn 117298108 117300997 2889 True 2468.0 2468 82.448 559 3455 1 chrUn.!!$R1 2896
9 TraesCS1D01G009300 chr1B 6485301 6487767 2466 True 2309.0 2309 83.713 975 3455 1 chr1B.!!$R1 2480
10 TraesCS1D01G009300 chr1B 7634953 7637389 2436 True 2276.0 2276 83.700 983 3452 1 chr1B.!!$R4 2469
11 TraesCS1D01G009300 chr1B 7254535 7256967 2432 True 2268.0 2268 83.556 995 3454 1 chr1B.!!$R3 2459
12 TraesCS1D01G009300 chr1B 5694895 5697375 2480 False 2161.0 2161 82.638 975 3455 1 chr1B.!!$F1 2480
13 TraesCS1D01G009300 chr1B 5949563 5952132 2569 False 1988.0 1988 81.038 559 3123 1 chr1B.!!$F3 2564
14 TraesCS1D01G009300 chr1B 5985791 5987698 1907 False 1694.0 1694 83.034 839 2750 1 chr1B.!!$F4 1911
15 TraesCS1D01G009300 chr1B 7289976 7291842 1866 False 1676.0 1676 83.113 911 2778 1 chr1B.!!$F5 1867
16 TraesCS1D01G009300 chr1B 6847886 6849575 1689 True 1611.0 1611 83.956 988 2692 1 chr1B.!!$R2 1704
17 TraesCS1D01G009300 chr1B 29937008 29937968 960 True 941.0 941 84.420 2481 3455 1 chr1B.!!$R5 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 461 0.038892 GCATGTGGTTCTGCAAGTGG 60.039 55.0 0.00 0.00 38.28 4.00 F
693 704 0.178992 TTGGTTGCTTCAGGGTCCTG 60.179 55.0 10.62 10.62 44.86 3.86 F
1049 1105 0.954452 CCACTGGTTTCCTTGCTGAC 59.046 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2499 0.543277 TCGAGGCAAGCTCATGGAAT 59.457 50.000 0.00 0.00 0.00 3.01 R
2418 2503 0.809241 GACCTCGAGGCAAGCTCATG 60.809 60.000 31.56 3.82 39.32 3.07 R
2602 2714 3.123050 CCTAGCAAAAATAAATGCCGCC 58.877 45.455 0.00 0.00 43.57 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.247666 ACTAACAACCTACTCAAACTAACTCT 57.752 34.615 0.00 0.00 0.00 3.24
46 47 9.359653 ACTAACAACCTACTCAAACTAACTCTA 57.640 33.333 0.00 0.00 0.00 2.43
49 50 8.653036 ACAACCTACTCAAACTAACTCTATCT 57.347 34.615 0.00 0.00 0.00 1.98
50 51 8.741841 ACAACCTACTCAAACTAACTCTATCTC 58.258 37.037 0.00 0.00 0.00 2.75
51 52 8.740906 CAACCTACTCAAACTAACTCTATCTCA 58.259 37.037 0.00 0.00 0.00 3.27
52 53 8.880991 ACCTACTCAAACTAACTCTATCTCAA 57.119 34.615 0.00 0.00 0.00 3.02
53 54 8.962679 ACCTACTCAAACTAACTCTATCTCAAG 58.037 37.037 0.00 0.00 0.00 3.02
54 55 9.179909 CCTACTCAAACTAACTCTATCTCAAGA 57.820 37.037 0.00 0.00 0.00 3.02
58 59 9.658475 CTCAAACTAACTCTATCTCAAGATACG 57.342 37.037 0.00 0.00 36.05 3.06
59 60 9.175312 TCAAACTAACTCTATCTCAAGATACGT 57.825 33.333 0.00 0.00 36.05 3.57
60 61 9.227490 CAAACTAACTCTATCTCAAGATACGTG 57.773 37.037 0.00 0.00 36.05 4.49
61 62 8.508883 AACTAACTCTATCTCAAGATACGTGT 57.491 34.615 0.00 0.00 36.05 4.49
62 63 9.610705 AACTAACTCTATCTCAAGATACGTGTA 57.389 33.333 0.00 0.00 36.05 2.90
63 64 9.781633 ACTAACTCTATCTCAAGATACGTGTAT 57.218 33.333 0.00 0.00 36.05 2.29
73 74 9.333724 TCTCAAGATACGTGTATTATGTCTACA 57.666 33.333 0.00 0.00 0.00 2.74
75 76 9.893305 TCAAGATACGTGTATTATGTCTACATG 57.107 33.333 0.00 0.00 40.40 3.21
76 77 9.678941 CAAGATACGTGTATTATGTCTACATGT 57.321 33.333 2.69 2.69 46.10 3.21
77 78 9.894783 AAGATACGTGTATTATGTCTACATGTC 57.105 33.333 0.00 0.00 42.73 3.06
78 79 8.512956 AGATACGTGTATTATGTCTACATGTCC 58.487 37.037 0.00 6.05 42.73 4.02
79 80 6.710597 ACGTGTATTATGTCTACATGTCCT 57.289 37.500 0.00 0.00 42.73 3.85
80 81 7.108841 ACGTGTATTATGTCTACATGTCCTT 57.891 36.000 0.00 0.00 42.73 3.36
81 82 6.978659 ACGTGTATTATGTCTACATGTCCTTG 59.021 38.462 0.00 0.00 42.73 3.61
82 83 6.978659 CGTGTATTATGTCTACATGTCCTTGT 59.021 38.462 0.00 0.00 37.15 3.16
83 84 7.491372 CGTGTATTATGTCTACATGTCCTTGTT 59.509 37.037 0.00 0.00 37.15 2.83
84 85 9.811995 GTGTATTATGTCTACATGTCCTTGTTA 57.188 33.333 0.00 0.00 37.15 2.41
85 86 9.811995 TGTATTATGTCTACATGTCCTTGTTAC 57.188 33.333 0.00 0.00 37.15 2.50
86 87 9.811995 GTATTATGTCTACATGTCCTTGTTACA 57.188 33.333 0.00 0.00 37.15 2.41
88 89 9.905713 ATTATGTCTACATGTCCTTGTTACAAT 57.094 29.630 0.00 0.00 37.15 2.71
91 92 9.905713 ATGTCTACATGTCCTTGTTACAATAAT 57.094 29.630 0.00 0.00 34.83 1.28
92 93 9.161629 TGTCTACATGTCCTTGTTACAATAATG 57.838 33.333 0.00 3.56 0.00 1.90
93 94 9.162764 GTCTACATGTCCTTGTTACAATAATGT 57.837 33.333 0.00 14.64 43.74 2.71
94 95 9.161629 TCTACATGTCCTTGTTACAATAATGTG 57.838 33.333 0.00 9.96 40.84 3.21
95 96 6.620678 ACATGTCCTTGTTACAATAATGTGC 58.379 36.000 0.00 0.00 40.84 4.57
96 97 5.289917 TGTCCTTGTTACAATAATGTGCG 57.710 39.130 0.00 0.00 40.84 5.34
97 98 4.095610 GTCCTTGTTACAATAATGTGCGC 58.904 43.478 0.00 0.00 40.84 6.09
98 99 3.753797 TCCTTGTTACAATAATGTGCGCA 59.246 39.130 5.66 5.66 40.84 6.09
99 100 4.397730 TCCTTGTTACAATAATGTGCGCAT 59.602 37.500 15.91 7.01 40.84 4.73
100 101 5.586643 TCCTTGTTACAATAATGTGCGCATA 59.413 36.000 15.91 12.79 40.84 3.14
101 102 6.262049 TCCTTGTTACAATAATGTGCGCATAT 59.738 34.615 15.91 15.11 40.84 1.78
102 103 7.442666 TCCTTGTTACAATAATGTGCGCATATA 59.557 33.333 20.49 10.85 40.84 0.86
103 104 8.236586 CCTTGTTACAATAATGTGCGCATATAT 58.763 33.333 20.49 12.64 40.84 0.86
104 105 8.947304 TTGTTACAATAATGTGCGCATATATG 57.053 30.769 20.49 19.59 40.84 1.78
105 106 8.316640 TGTTACAATAATGTGCGCATATATGA 57.683 30.769 20.49 9.20 40.84 2.15
106 107 8.442384 TGTTACAATAATGTGCGCATATATGAG 58.558 33.333 20.49 14.29 40.84 2.90
107 108 8.443160 GTTACAATAATGTGCGCATATATGAGT 58.557 33.333 20.49 17.39 40.84 3.41
108 109 7.439157 ACAATAATGTGCGCATATATGAGTT 57.561 32.000 20.49 6.85 38.69 3.01
109 110 7.874940 ACAATAATGTGCGCATATATGAGTTT 58.125 30.769 20.49 6.11 38.69 2.66
110 111 8.998377 ACAATAATGTGCGCATATATGAGTTTA 58.002 29.630 20.49 8.21 38.69 2.01
111 112 9.824534 CAATAATGTGCGCATATATGAGTTTAA 57.175 29.630 20.49 1.94 34.39 1.52
112 113 9.825972 AATAATGTGCGCATATATGAGTTTAAC 57.174 29.630 20.49 10.67 34.39 2.01
113 114 6.859420 ATGTGCGCATATATGAGTTTAACA 57.141 33.333 18.79 15.09 32.73 2.41
114 115 6.670077 TGTGCGCATATATGAGTTTAACAA 57.330 33.333 15.91 1.23 0.00 2.83
115 116 7.258022 TGTGCGCATATATGAGTTTAACAAT 57.742 32.000 15.91 0.00 0.00 2.71
116 117 7.702386 TGTGCGCATATATGAGTTTAACAATT 58.298 30.769 15.91 0.00 0.00 2.32
117 118 8.187480 TGTGCGCATATATGAGTTTAACAATTT 58.813 29.630 15.91 0.00 0.00 1.82
118 119 9.019764 GTGCGCATATATGAGTTTAACAATTTT 57.980 29.630 15.91 0.00 0.00 1.82
119 120 9.579768 TGCGCATATATGAGTTTAACAATTTTT 57.420 25.926 17.10 0.00 0.00 1.94
120 121 9.833894 GCGCATATATGAGTTTAACAATTTTTG 57.166 29.630 17.10 0.00 0.00 2.44
121 122 9.833894 CGCATATATGAGTTTAACAATTTTTGC 57.166 29.630 17.10 3.16 0.00 3.68
129 130 8.538856 TGAGTTTAACAATTTTTGCTCATTTCG 58.461 29.630 0.00 0.00 0.00 3.46
130 131 8.641499 AGTTTAACAATTTTTGCTCATTTCGA 57.359 26.923 0.00 0.00 0.00 3.71
131 132 9.260002 AGTTTAACAATTTTTGCTCATTTCGAT 57.740 25.926 0.00 0.00 0.00 3.59
132 133 9.305110 GTTTAACAATTTTTGCTCATTTCGATG 57.695 29.630 0.00 0.00 0.00 3.84
133 134 6.470557 AACAATTTTTGCTCATTTCGATGG 57.529 33.333 0.00 0.00 0.00 3.51
134 135 5.540911 ACAATTTTTGCTCATTTCGATGGT 58.459 33.333 0.00 0.00 0.00 3.55
135 136 6.686630 ACAATTTTTGCTCATTTCGATGGTA 58.313 32.000 0.00 0.00 0.00 3.25
136 137 7.151308 ACAATTTTTGCTCATTTCGATGGTAA 58.849 30.769 0.00 0.00 0.00 2.85
137 138 7.818930 ACAATTTTTGCTCATTTCGATGGTAAT 59.181 29.630 0.00 0.00 0.00 1.89
138 139 7.992180 ATTTTTGCTCATTTCGATGGTAATC 57.008 32.000 0.00 0.00 0.00 1.75
139 140 6.757897 TTTTGCTCATTTCGATGGTAATCT 57.242 33.333 0.00 0.00 0.00 2.40
140 141 5.991328 TTGCTCATTTCGATGGTAATCTC 57.009 39.130 0.00 0.00 0.00 2.75
141 142 4.051237 TGCTCATTTCGATGGTAATCTCG 58.949 43.478 0.00 0.00 36.25 4.04
142 143 4.202111 TGCTCATTTCGATGGTAATCTCGA 60.202 41.667 0.00 0.00 41.76 4.04
143 144 4.926238 GCTCATTTCGATGGTAATCTCGAT 59.074 41.667 0.00 0.00 42.84 3.59
144 145 5.406780 GCTCATTTCGATGGTAATCTCGATT 59.593 40.000 0.00 0.00 42.84 3.34
145 146 6.073548 GCTCATTTCGATGGTAATCTCGATTT 60.074 38.462 0.00 0.00 42.84 2.17
146 147 7.519008 GCTCATTTCGATGGTAATCTCGATTTT 60.519 37.037 0.00 0.00 42.84 1.82
147 148 8.208718 TCATTTCGATGGTAATCTCGATTTTT 57.791 30.769 0.00 0.00 42.84 1.94
148 149 8.122330 TCATTTCGATGGTAATCTCGATTTTTG 58.878 33.333 0.00 0.00 42.84 2.44
149 150 7.603963 TTTCGATGGTAATCTCGATTTTTGA 57.396 32.000 0.00 0.00 42.84 2.69
150 151 6.828502 TCGATGGTAATCTCGATTTTTGAG 57.171 37.500 0.00 0.00 38.86 3.02
151 152 5.753438 TCGATGGTAATCTCGATTTTTGAGG 59.247 40.000 0.00 0.00 38.86 3.86
152 153 5.523916 CGATGGTAATCTCGATTTTTGAGGT 59.476 40.000 0.00 0.00 37.05 3.85
153 154 6.292381 CGATGGTAATCTCGATTTTTGAGGTC 60.292 42.308 0.00 0.00 37.05 3.85
154 155 5.800296 TGGTAATCTCGATTTTTGAGGTCA 58.200 37.500 0.00 0.00 34.19 4.02
155 156 5.642063 TGGTAATCTCGATTTTTGAGGTCAC 59.358 40.000 0.00 0.00 34.19 3.67
156 157 5.642063 GGTAATCTCGATTTTTGAGGTCACA 59.358 40.000 0.00 0.00 34.19 3.58
157 158 6.316390 GGTAATCTCGATTTTTGAGGTCACAT 59.684 38.462 0.00 0.00 34.19 3.21
158 159 6.824305 AATCTCGATTTTTGAGGTCACATT 57.176 33.333 0.00 0.00 34.19 2.71
159 160 6.824305 ATCTCGATTTTTGAGGTCACATTT 57.176 33.333 0.00 0.00 34.19 2.32
160 161 6.633500 TCTCGATTTTTGAGGTCACATTTT 57.367 33.333 0.00 0.00 34.19 1.82
161 162 6.668323 TCTCGATTTTTGAGGTCACATTTTC 58.332 36.000 0.00 0.00 34.19 2.29
162 163 6.262049 TCTCGATTTTTGAGGTCACATTTTCA 59.738 34.615 0.00 0.00 34.19 2.69
163 164 6.980593 TCGATTTTTGAGGTCACATTTTCAT 58.019 32.000 0.00 0.00 0.00 2.57
164 165 8.105097 TCGATTTTTGAGGTCACATTTTCATA 57.895 30.769 0.00 0.00 0.00 2.15
165 166 8.236586 TCGATTTTTGAGGTCACATTTTCATAG 58.763 33.333 0.00 0.00 0.00 2.23
166 167 8.023128 CGATTTTTGAGGTCACATTTTCATAGT 58.977 33.333 0.00 0.00 0.00 2.12
167 168 9.132521 GATTTTTGAGGTCACATTTTCATAGTG 57.867 33.333 0.00 0.00 34.67 2.74
168 169 6.573664 TTTGAGGTCACATTTTCATAGTGG 57.426 37.500 0.00 0.00 34.17 4.00
169 170 5.241403 TGAGGTCACATTTTCATAGTGGT 57.759 39.130 0.00 0.00 34.17 4.16
170 171 5.003160 TGAGGTCACATTTTCATAGTGGTG 58.997 41.667 0.00 0.00 34.17 4.17
171 172 4.335416 AGGTCACATTTTCATAGTGGTGG 58.665 43.478 0.00 0.00 34.17 4.61
172 173 4.042809 AGGTCACATTTTCATAGTGGTGGA 59.957 41.667 0.00 0.00 34.17 4.02
173 174 4.764823 GGTCACATTTTCATAGTGGTGGAA 59.235 41.667 0.00 0.00 34.17 3.53
174 175 5.418840 GGTCACATTTTCATAGTGGTGGAAT 59.581 40.000 0.00 0.00 34.17 3.01
175 176 6.601613 GGTCACATTTTCATAGTGGTGGAATA 59.398 38.462 0.00 0.00 34.17 1.75
176 177 7.415206 GGTCACATTTTCATAGTGGTGGAATAC 60.415 40.741 0.00 0.00 34.17 1.89
177 178 7.336931 GTCACATTTTCATAGTGGTGGAATACT 59.663 37.037 0.00 0.00 34.17 2.12
178 179 7.336679 TCACATTTTCATAGTGGTGGAATACTG 59.663 37.037 0.00 0.00 34.17 2.74
179 180 6.603201 ACATTTTCATAGTGGTGGAATACTGG 59.397 38.462 0.00 0.00 0.00 4.00
180 181 6.381498 TTTTCATAGTGGTGGAATACTGGA 57.619 37.500 0.00 0.00 0.00 3.86
181 182 6.381498 TTTCATAGTGGTGGAATACTGGAA 57.619 37.500 0.00 0.00 0.00 3.53
182 183 6.575244 TTCATAGTGGTGGAATACTGGAAT 57.425 37.500 0.00 0.00 0.00 3.01
183 184 7.684317 TTCATAGTGGTGGAATACTGGAATA 57.316 36.000 0.00 0.00 0.00 1.75
184 185 7.303182 TCATAGTGGTGGAATACTGGAATAG 57.697 40.000 0.00 0.00 0.00 1.73
185 186 7.073208 TCATAGTGGTGGAATACTGGAATAGA 58.927 38.462 0.00 0.00 0.00 1.98
186 187 7.734865 TCATAGTGGTGGAATACTGGAATAGAT 59.265 37.037 0.00 0.00 0.00 1.98
187 188 9.035890 CATAGTGGTGGAATACTGGAATAGATA 57.964 37.037 0.00 0.00 0.00 1.98
188 189 7.931015 AGTGGTGGAATACTGGAATAGATAA 57.069 36.000 0.00 0.00 0.00 1.75
189 190 8.331931 AGTGGTGGAATACTGGAATAGATAAA 57.668 34.615 0.00 0.00 0.00 1.40
190 191 8.778059 AGTGGTGGAATACTGGAATAGATAAAA 58.222 33.333 0.00 0.00 0.00 1.52
191 192 9.403583 GTGGTGGAATACTGGAATAGATAAAAA 57.596 33.333 0.00 0.00 0.00 1.94
192 193 9.627123 TGGTGGAATACTGGAATAGATAAAAAG 57.373 33.333 0.00 0.00 0.00 2.27
193 194 9.628500 GGTGGAATACTGGAATAGATAAAAAGT 57.372 33.333 0.00 0.00 0.00 2.66
200 201 8.056407 ACTGGAATAGATAAAAAGTTTCAGGC 57.944 34.615 0.00 0.00 0.00 4.85
201 202 7.083875 TGGAATAGATAAAAAGTTTCAGGCG 57.916 36.000 0.00 0.00 0.00 5.52
202 203 5.971792 GGAATAGATAAAAAGTTTCAGGCGC 59.028 40.000 0.00 0.00 0.00 6.53
203 204 6.404293 GGAATAGATAAAAAGTTTCAGGCGCA 60.404 38.462 10.83 0.00 0.00 6.09
204 205 4.846779 AGATAAAAAGTTTCAGGCGCAA 57.153 36.364 10.83 0.00 0.00 4.85
205 206 4.546570 AGATAAAAAGTTTCAGGCGCAAC 58.453 39.130 10.83 4.75 0.00 4.17
206 207 2.663826 AAAAAGTTTCAGGCGCAACA 57.336 40.000 10.83 0.00 0.00 3.33
207 208 2.663826 AAAAGTTTCAGGCGCAACAA 57.336 40.000 10.83 0.00 0.00 2.83
208 209 2.663826 AAAGTTTCAGGCGCAACAAA 57.336 40.000 10.83 0.65 0.00 2.83
209 210 2.663826 AAGTTTCAGGCGCAACAAAA 57.336 40.000 10.83 0.63 0.00 2.44
210 211 2.663826 AGTTTCAGGCGCAACAAAAA 57.336 40.000 10.83 0.00 0.00 1.94
211 212 3.177997 AGTTTCAGGCGCAACAAAAAT 57.822 38.095 10.83 0.00 0.00 1.82
212 213 4.314740 AGTTTCAGGCGCAACAAAAATA 57.685 36.364 10.83 0.00 0.00 1.40
213 214 4.688021 AGTTTCAGGCGCAACAAAAATAA 58.312 34.783 10.83 0.00 0.00 1.40
214 215 4.744631 AGTTTCAGGCGCAACAAAAATAAG 59.255 37.500 10.83 0.00 0.00 1.73
215 216 4.314740 TTCAGGCGCAACAAAAATAAGT 57.685 36.364 10.83 0.00 0.00 2.24
216 217 5.440234 TTCAGGCGCAACAAAAATAAGTA 57.560 34.783 10.83 0.00 0.00 2.24
217 218 5.637006 TCAGGCGCAACAAAAATAAGTAT 57.363 34.783 10.83 0.00 0.00 2.12
218 219 6.745159 TCAGGCGCAACAAAAATAAGTATA 57.255 33.333 10.83 0.00 0.00 1.47
219 220 6.548171 TCAGGCGCAACAAAAATAAGTATAC 58.452 36.000 10.83 0.00 0.00 1.47
220 221 6.373216 TCAGGCGCAACAAAAATAAGTATACT 59.627 34.615 10.83 0.00 0.00 2.12
221 222 6.687105 CAGGCGCAACAAAAATAAGTATACTC 59.313 38.462 10.83 0.00 0.00 2.59
222 223 6.373216 AGGCGCAACAAAAATAAGTATACTCA 59.627 34.615 10.83 0.00 0.00 3.41
223 224 6.468000 GGCGCAACAAAAATAAGTATACTCAC 59.532 38.462 10.83 0.00 0.00 3.51
224 225 7.241376 GCGCAACAAAAATAAGTATACTCACT 58.759 34.615 5.70 0.00 0.00 3.41
225 226 7.425595 GCGCAACAAAAATAAGTATACTCACTC 59.574 37.037 5.70 0.00 0.00 3.51
226 227 7.903431 CGCAACAAAAATAAGTATACTCACTCC 59.097 37.037 5.70 0.00 0.00 3.85
227 228 8.182227 GCAACAAAAATAAGTATACTCACTCCC 58.818 37.037 5.70 0.00 0.00 4.30
228 229 9.449719 CAACAAAAATAAGTATACTCACTCCCT 57.550 33.333 5.70 0.00 0.00 4.20
249 250 3.625649 TTTTTGCAAGGTCAGGCTTTT 57.374 38.095 0.00 0.00 0.00 2.27
250 251 2.600470 TTTGCAAGGTCAGGCTTTTG 57.400 45.000 0.00 0.00 0.00 2.44
251 252 0.104671 TTGCAAGGTCAGGCTTTTGC 59.895 50.000 13.01 13.01 44.56 3.68
262 263 4.377708 CTTTTGCAAGCCCGGCCC 62.378 66.667 5.55 0.00 0.00 5.80
267 268 4.680237 GCAAGCCCGGCCCAAAAC 62.680 66.667 5.55 0.00 0.00 2.43
268 269 4.002506 CAAGCCCGGCCCAAAACC 62.003 66.667 5.55 0.00 0.00 3.27
278 279 4.994756 CCAAAACCCGGCCTGGCT 62.995 66.667 19.68 0.00 35.87 4.75
279 280 3.683937 CAAAACCCGGCCTGGCTG 61.684 66.667 20.81 20.81 35.87 4.85
280 281 3.897122 AAAACCCGGCCTGGCTGA 61.897 61.111 28.79 0.00 37.02 4.26
281 282 4.660938 AAACCCGGCCTGGCTGAC 62.661 66.667 28.79 6.19 37.02 3.51
283 284 4.715130 ACCCGGCCTGGCTGACTA 62.715 66.667 28.79 0.00 37.02 2.59
284 285 3.399181 CCCGGCCTGGCTGACTAA 61.399 66.667 28.79 0.00 37.02 2.24
285 286 2.746375 CCCGGCCTGGCTGACTAAT 61.746 63.158 28.79 0.00 37.02 1.73
286 287 1.524621 CCGGCCTGGCTGACTAATG 60.525 63.158 28.79 6.94 37.02 1.90
287 288 1.522092 CGGCCTGGCTGACTAATGA 59.478 57.895 23.22 0.00 37.02 2.57
288 289 0.107456 CGGCCTGGCTGACTAATGAT 59.893 55.000 23.22 0.00 37.02 2.45
289 290 1.875576 CGGCCTGGCTGACTAATGATC 60.876 57.143 23.22 0.00 37.02 2.92
290 291 1.141657 GGCCTGGCTGACTAATGATCA 59.858 52.381 19.68 0.00 0.00 2.92
291 292 2.492012 GCCTGGCTGACTAATGATCAG 58.508 52.381 12.43 0.00 45.40 2.90
292 293 2.809665 GCCTGGCTGACTAATGATCAGG 60.810 54.545 12.43 0.00 43.26 3.86
293 294 2.437281 CCTGGCTGACTAATGATCAGGT 59.563 50.000 0.09 0.00 43.26 4.00
294 295 3.118112 CCTGGCTGACTAATGATCAGGTT 60.118 47.826 0.09 0.00 43.26 3.50
295 296 4.521146 CTGGCTGACTAATGATCAGGTTT 58.479 43.478 0.09 0.00 43.26 3.27
296 297 5.396772 CCTGGCTGACTAATGATCAGGTTTA 60.397 44.000 0.09 0.00 43.26 2.01
297 298 5.428253 TGGCTGACTAATGATCAGGTTTAC 58.572 41.667 0.09 0.00 43.26 2.01
298 299 4.508124 GGCTGACTAATGATCAGGTTTACG 59.492 45.833 0.09 0.00 43.26 3.18
299 300 5.109903 GCTGACTAATGATCAGGTTTACGT 58.890 41.667 0.09 0.00 43.26 3.57
300 301 5.232414 GCTGACTAATGATCAGGTTTACGTC 59.768 44.000 0.09 6.04 43.26 4.34
301 302 6.275494 TGACTAATGATCAGGTTTACGTCA 57.725 37.500 0.09 8.17 0.00 4.35
302 303 6.097356 TGACTAATGATCAGGTTTACGTCAC 58.903 40.000 0.09 0.00 0.00 3.67
303 304 5.100259 ACTAATGATCAGGTTTACGTCACG 58.900 41.667 0.09 0.00 0.00 4.35
304 305 3.861276 ATGATCAGGTTTACGTCACGA 57.139 42.857 2.91 0.00 0.00 4.35
305 306 3.211803 TGATCAGGTTTACGTCACGAG 57.788 47.619 2.91 0.00 0.00 4.18
306 307 1.918609 GATCAGGTTTACGTCACGAGC 59.081 52.381 2.91 0.00 0.00 5.03
307 308 0.669619 TCAGGTTTACGTCACGAGCA 59.330 50.000 2.91 0.00 0.00 4.26
308 309 0.782384 CAGGTTTACGTCACGAGCAC 59.218 55.000 2.91 0.00 0.00 4.40
309 310 0.319297 AGGTTTACGTCACGAGCACC 60.319 55.000 2.91 6.25 0.00 5.01
310 311 0.319297 GGTTTACGTCACGAGCACCT 60.319 55.000 2.91 0.00 0.00 4.00
311 312 1.068333 GGTTTACGTCACGAGCACCTA 60.068 52.381 2.91 0.00 0.00 3.08
312 313 2.607771 GGTTTACGTCACGAGCACCTAA 60.608 50.000 2.91 0.00 0.00 2.69
313 314 3.248266 GTTTACGTCACGAGCACCTAAT 58.752 45.455 2.91 0.00 0.00 1.73
314 315 3.581024 TTACGTCACGAGCACCTAATT 57.419 42.857 2.91 0.00 0.00 1.40
315 316 4.700268 TTACGTCACGAGCACCTAATTA 57.300 40.909 2.91 0.00 0.00 1.40
316 317 3.581024 ACGTCACGAGCACCTAATTAA 57.419 42.857 2.91 0.00 0.00 1.40
317 318 3.916761 ACGTCACGAGCACCTAATTAAA 58.083 40.909 2.91 0.00 0.00 1.52
318 319 4.309099 ACGTCACGAGCACCTAATTAAAA 58.691 39.130 2.91 0.00 0.00 1.52
319 320 4.933400 ACGTCACGAGCACCTAATTAAAAT 59.067 37.500 2.91 0.00 0.00 1.82
320 321 5.410439 ACGTCACGAGCACCTAATTAAAATT 59.590 36.000 2.91 0.00 0.00 1.82
321 322 5.732647 CGTCACGAGCACCTAATTAAAATTG 59.267 40.000 0.00 0.00 0.00 2.32
322 323 6.027749 GTCACGAGCACCTAATTAAAATTGG 58.972 40.000 0.00 0.00 0.00 3.16
338 339 8.877864 TTAAAATTGGGCTCTATCTTTTGAGA 57.122 30.769 0.00 0.00 32.44 3.27
339 340 6.765915 AAATTGGGCTCTATCTTTTGAGAC 57.234 37.500 0.00 0.00 37.60 3.36
342 343 2.827652 GGCTCTATCTTTTGAGACCCG 58.172 52.381 0.00 0.00 32.43 5.28
343 344 2.205911 GCTCTATCTTTTGAGACCCGC 58.794 52.381 0.00 0.00 32.44 6.13
344 345 2.418746 GCTCTATCTTTTGAGACCCGCA 60.419 50.000 0.00 0.00 32.44 5.69
345 346 3.190874 CTCTATCTTTTGAGACCCGCAC 58.809 50.000 0.00 0.00 32.44 5.34
346 347 2.093658 TCTATCTTTTGAGACCCGCACC 60.094 50.000 0.00 0.00 0.00 5.01
347 348 0.400213 ATCTTTTGAGACCCGCACCA 59.600 50.000 0.00 0.00 0.00 4.17
348 349 0.400213 TCTTTTGAGACCCGCACCAT 59.600 50.000 0.00 0.00 0.00 3.55
349 350 1.626321 TCTTTTGAGACCCGCACCATA 59.374 47.619 0.00 0.00 0.00 2.74
350 351 2.238646 TCTTTTGAGACCCGCACCATAT 59.761 45.455 0.00 0.00 0.00 1.78
351 352 2.799126 TTTGAGACCCGCACCATATT 57.201 45.000 0.00 0.00 0.00 1.28
352 353 2.799126 TTGAGACCCGCACCATATTT 57.201 45.000 0.00 0.00 0.00 1.40
353 354 2.036958 TGAGACCCGCACCATATTTG 57.963 50.000 0.00 0.00 0.00 2.32
354 355 1.557371 TGAGACCCGCACCATATTTGA 59.443 47.619 0.00 0.00 0.00 2.69
355 356 2.213499 GAGACCCGCACCATATTTGAG 58.787 52.381 0.00 0.00 0.00 3.02
356 357 1.837439 AGACCCGCACCATATTTGAGA 59.163 47.619 0.00 0.00 0.00 3.27
357 358 2.158900 AGACCCGCACCATATTTGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
358 359 1.837439 ACCCGCACCATATTTGAGAGA 59.163 47.619 0.00 0.00 0.00 3.10
359 360 2.213499 CCCGCACCATATTTGAGAGAC 58.787 52.381 0.00 0.00 0.00 3.36
360 361 2.213499 CCGCACCATATTTGAGAGACC 58.787 52.381 0.00 0.00 0.00 3.85
361 362 2.419990 CCGCACCATATTTGAGAGACCA 60.420 50.000 0.00 0.00 0.00 4.02
362 363 3.270027 CGCACCATATTTGAGAGACCAA 58.730 45.455 0.00 0.00 0.00 3.67
363 364 3.063997 CGCACCATATTTGAGAGACCAAC 59.936 47.826 0.00 0.00 0.00 3.77
364 365 3.378427 GCACCATATTTGAGAGACCAACC 59.622 47.826 0.00 0.00 0.00 3.77
365 366 4.848357 CACCATATTTGAGAGACCAACCT 58.152 43.478 0.00 0.00 0.00 3.50
366 367 5.256474 CACCATATTTGAGAGACCAACCTT 58.744 41.667 0.00 0.00 0.00 3.50
367 368 6.414732 CACCATATTTGAGAGACCAACCTTA 58.585 40.000 0.00 0.00 0.00 2.69
368 369 6.884295 CACCATATTTGAGAGACCAACCTTAA 59.116 38.462 0.00 0.00 0.00 1.85
369 370 7.066284 CACCATATTTGAGAGACCAACCTTAAG 59.934 40.741 0.00 0.00 0.00 1.85
370 371 6.038714 CCATATTTGAGAGACCAACCTTAAGC 59.961 42.308 0.00 0.00 0.00 3.09
371 372 3.418684 TTGAGAGACCAACCTTAAGCC 57.581 47.619 0.00 0.00 0.00 4.35
372 373 2.334977 TGAGAGACCAACCTTAAGCCA 58.665 47.619 0.00 0.00 0.00 4.75
373 374 2.708861 TGAGAGACCAACCTTAAGCCAA 59.291 45.455 0.00 0.00 0.00 4.52
374 375 3.244561 TGAGAGACCAACCTTAAGCCAAG 60.245 47.826 0.00 0.00 0.00 3.61
375 376 1.813178 GAGACCAACCTTAAGCCAAGC 59.187 52.381 0.00 0.00 32.41 4.01
376 377 0.888619 GACCAACCTTAAGCCAAGCC 59.111 55.000 0.00 0.00 32.41 4.35
377 378 0.541998 ACCAACCTTAAGCCAAGCCC 60.542 55.000 0.00 0.00 32.41 5.19
378 379 0.541764 CCAACCTTAAGCCAAGCCCA 60.542 55.000 0.00 0.00 32.41 5.36
379 380 0.603065 CAACCTTAAGCCAAGCCCAC 59.397 55.000 0.00 0.00 32.41 4.61
380 381 0.187361 AACCTTAAGCCAAGCCCACA 59.813 50.000 0.00 0.00 32.41 4.17
381 382 0.539669 ACCTTAAGCCAAGCCCACAC 60.540 55.000 0.00 0.00 32.41 3.82
382 383 0.251341 CCTTAAGCCAAGCCCACACT 60.251 55.000 0.00 0.00 32.41 3.55
383 384 1.620822 CTTAAGCCAAGCCCACACTT 58.379 50.000 0.00 0.00 0.00 3.16
384 385 1.963515 CTTAAGCCAAGCCCACACTTT 59.036 47.619 0.00 0.00 0.00 2.66
385 386 1.327303 TAAGCCAAGCCCACACTTTG 58.673 50.000 0.00 0.00 0.00 2.77
386 387 2.029518 GCCAAGCCCACACTTTGC 59.970 61.111 0.00 0.00 32.03 3.68
387 388 2.736531 CCAAGCCCACACTTTGCC 59.263 61.111 0.00 0.00 0.00 4.52
388 389 2.336088 CAAGCCCACACTTTGCCG 59.664 61.111 0.00 0.00 0.00 5.69
389 390 2.192861 CAAGCCCACACTTTGCCGA 61.193 57.895 0.00 0.00 0.00 5.54
390 391 1.228552 AAGCCCACACTTTGCCGAT 60.229 52.632 0.00 0.00 0.00 4.18
391 392 1.244019 AAGCCCACACTTTGCCGATC 61.244 55.000 0.00 0.00 0.00 3.69
392 393 1.675641 GCCCACACTTTGCCGATCT 60.676 57.895 0.00 0.00 0.00 2.75
393 394 1.244019 GCCCACACTTTGCCGATCTT 61.244 55.000 0.00 0.00 0.00 2.40
394 395 0.804989 CCCACACTTTGCCGATCTTC 59.195 55.000 0.00 0.00 0.00 2.87
395 396 1.522668 CCACACTTTGCCGATCTTCA 58.477 50.000 0.00 0.00 0.00 3.02
396 397 2.086869 CCACACTTTGCCGATCTTCAT 58.913 47.619 0.00 0.00 0.00 2.57
397 398 3.270027 CCACACTTTGCCGATCTTCATA 58.730 45.455 0.00 0.00 0.00 2.15
398 399 3.879295 CCACACTTTGCCGATCTTCATAT 59.121 43.478 0.00 0.00 0.00 1.78
399 400 4.336433 CCACACTTTGCCGATCTTCATATT 59.664 41.667 0.00 0.00 0.00 1.28
400 401 5.163622 CCACACTTTGCCGATCTTCATATTT 60.164 40.000 0.00 0.00 0.00 1.40
401 402 6.324819 CACACTTTGCCGATCTTCATATTTT 58.675 36.000 0.00 0.00 0.00 1.82
402 403 6.470235 CACACTTTGCCGATCTTCATATTTTC 59.530 38.462 0.00 0.00 0.00 2.29
403 404 6.375455 ACACTTTGCCGATCTTCATATTTTCT 59.625 34.615 0.00 0.00 0.00 2.52
404 405 6.909357 CACTTTGCCGATCTTCATATTTTCTC 59.091 38.462 0.00 0.00 0.00 2.87
405 406 6.038714 ACTTTGCCGATCTTCATATTTTCTCC 59.961 38.462 0.00 0.00 0.00 3.71
406 407 4.389374 TGCCGATCTTCATATTTTCTCCC 58.611 43.478 0.00 0.00 0.00 4.30
407 408 3.753797 GCCGATCTTCATATTTTCTCCCC 59.246 47.826 0.00 0.00 0.00 4.81
408 409 4.327680 CCGATCTTCATATTTTCTCCCCC 58.672 47.826 0.00 0.00 0.00 5.40
409 410 4.202461 CCGATCTTCATATTTTCTCCCCCA 60.202 45.833 0.00 0.00 0.00 4.96
410 411 5.515534 CCGATCTTCATATTTTCTCCCCCAT 60.516 44.000 0.00 0.00 0.00 4.00
411 412 6.006449 CGATCTTCATATTTTCTCCCCCATT 58.994 40.000 0.00 0.00 0.00 3.16
412 413 6.072286 CGATCTTCATATTTTCTCCCCCATTG 60.072 42.308 0.00 0.00 0.00 2.82
413 414 5.457686 TCTTCATATTTTCTCCCCCATTGG 58.542 41.667 0.00 0.00 0.00 3.16
414 415 4.898014 TCATATTTTCTCCCCCATTGGT 57.102 40.909 1.20 0.00 0.00 3.67
415 416 4.803452 TCATATTTTCTCCCCCATTGGTC 58.197 43.478 1.20 0.00 0.00 4.02
416 417 4.482025 TCATATTTTCTCCCCCATTGGTCT 59.518 41.667 1.20 0.00 0.00 3.85
417 418 3.852858 ATTTTCTCCCCCATTGGTCTT 57.147 42.857 1.20 0.00 0.00 3.01
418 419 2.899303 TTTCTCCCCCATTGGTCTTC 57.101 50.000 1.20 0.00 0.00 2.87
419 420 1.753903 TTCTCCCCCATTGGTCTTCA 58.246 50.000 1.20 0.00 0.00 3.02
420 421 0.991920 TCTCCCCCATTGGTCTTCAC 59.008 55.000 1.20 0.00 0.00 3.18
421 422 0.698238 CTCCCCCATTGGTCTTCACA 59.302 55.000 1.20 0.00 0.00 3.58
422 423 1.075374 CTCCCCCATTGGTCTTCACAA 59.925 52.381 1.20 0.00 0.00 3.33
423 424 1.075374 TCCCCCATTGGTCTTCACAAG 59.925 52.381 1.20 0.00 0.00 3.16
424 425 0.890683 CCCCATTGGTCTTCACAAGC 59.109 55.000 1.20 0.00 0.00 4.01
425 426 0.523072 CCCATTGGTCTTCACAAGCG 59.477 55.000 1.20 0.00 0.00 4.68
426 427 0.109597 CCATTGGTCTTCACAAGCGC 60.110 55.000 0.00 0.00 0.00 5.92
427 428 0.109597 CATTGGTCTTCACAAGCGCC 60.110 55.000 2.29 0.00 0.00 6.53
428 429 0.537143 ATTGGTCTTCACAAGCGCCA 60.537 50.000 2.29 0.00 33.58 5.69
429 430 0.537143 TTGGTCTTCACAAGCGCCAT 60.537 50.000 2.29 0.00 34.77 4.40
430 431 1.236616 TGGTCTTCACAAGCGCCATG 61.237 55.000 2.29 6.50 31.56 3.66
431 432 0.955428 GGTCTTCACAAGCGCCATGA 60.955 55.000 16.76 9.55 0.00 3.07
432 433 0.874390 GTCTTCACAAGCGCCATGAA 59.126 50.000 16.76 15.98 0.00 2.57
433 434 1.470098 GTCTTCACAAGCGCCATGAAT 59.530 47.619 16.76 0.00 32.16 2.57
434 435 2.677836 GTCTTCACAAGCGCCATGAATA 59.322 45.455 16.76 8.47 32.16 1.75
435 436 3.313526 GTCTTCACAAGCGCCATGAATAT 59.686 43.478 16.76 0.00 32.16 1.28
436 437 3.313249 TCTTCACAAGCGCCATGAATATG 59.687 43.478 16.76 7.35 32.16 1.78
437 438 2.642427 TCACAAGCGCCATGAATATGT 58.358 42.857 16.76 1.50 32.21 2.29
438 439 2.355444 TCACAAGCGCCATGAATATGTG 59.645 45.455 16.76 12.53 38.36 3.21
439 440 1.066002 ACAAGCGCCATGAATATGTGC 59.934 47.619 16.76 0.00 35.31 4.57
440 441 1.335810 CAAGCGCCATGAATATGTGCT 59.664 47.619 2.29 0.00 42.43 4.40
441 442 0.949397 AGCGCCATGAATATGTGCTG 59.051 50.000 2.29 0.00 40.47 4.41
442 443 0.662374 GCGCCATGAATATGTGCTGC 60.662 55.000 0.00 0.00 33.47 5.25
443 444 0.664224 CGCCATGAATATGTGCTGCA 59.336 50.000 0.00 0.00 32.02 4.41
444 445 1.268625 CGCCATGAATATGTGCTGCAT 59.731 47.619 5.27 0.00 41.42 3.96
445 446 2.672714 GCCATGAATATGTGCTGCATG 58.327 47.619 5.27 0.00 38.47 4.06
446 447 2.035449 GCCATGAATATGTGCTGCATGT 59.965 45.455 5.27 0.00 38.47 3.21
447 448 3.638484 CCATGAATATGTGCTGCATGTG 58.362 45.455 5.27 0.00 38.47 3.21
448 449 3.552068 CCATGAATATGTGCTGCATGTGG 60.552 47.826 5.27 2.31 38.47 4.17
449 450 2.725637 TGAATATGTGCTGCATGTGGT 58.274 42.857 5.27 0.00 38.47 4.16
450 451 3.090790 TGAATATGTGCTGCATGTGGTT 58.909 40.909 5.27 0.00 38.47 3.67
451 452 3.129113 TGAATATGTGCTGCATGTGGTTC 59.871 43.478 5.27 8.01 38.47 3.62
452 453 2.495155 TATGTGCTGCATGTGGTTCT 57.505 45.000 5.27 0.00 38.47 3.01
453 454 0.885879 ATGTGCTGCATGTGGTTCTG 59.114 50.000 5.27 0.00 36.26 3.02
454 455 1.080974 GTGCTGCATGTGGTTCTGC 60.081 57.895 5.27 0.00 38.87 4.26
455 456 1.528776 TGCTGCATGTGGTTCTGCA 60.529 52.632 0.00 0.00 45.60 4.41
456 457 1.108132 TGCTGCATGTGGTTCTGCAA 61.108 50.000 0.00 0.00 46.87 4.08
457 458 0.388134 GCTGCATGTGGTTCTGCAAG 60.388 55.000 0.00 0.00 46.87 4.01
458 459 0.956633 CTGCATGTGGTTCTGCAAGT 59.043 50.000 0.00 0.00 46.87 3.16
459 460 0.669619 TGCATGTGGTTCTGCAAGTG 59.330 50.000 0.00 0.00 44.87 3.16
460 461 0.038892 GCATGTGGTTCTGCAAGTGG 60.039 55.000 0.00 0.00 38.28 4.00
461 462 1.321474 CATGTGGTTCTGCAAGTGGT 58.679 50.000 0.00 0.00 33.76 4.16
462 463 1.682854 CATGTGGTTCTGCAAGTGGTT 59.317 47.619 0.00 0.00 33.76 3.67
463 464 1.388547 TGTGGTTCTGCAAGTGGTTC 58.611 50.000 0.00 0.00 33.76 3.62
464 465 0.668535 GTGGTTCTGCAAGTGGTTCC 59.331 55.000 0.00 0.00 33.76 3.62
465 466 0.467290 TGGTTCTGCAAGTGGTTCCC 60.467 55.000 0.00 0.00 33.76 3.97
466 467 1.179174 GGTTCTGCAAGTGGTTCCCC 61.179 60.000 0.00 0.00 33.76 4.81
467 468 1.152830 TTCTGCAAGTGGTTCCCCC 59.847 57.895 0.00 0.00 33.76 5.40
468 469 1.650242 TTCTGCAAGTGGTTCCCCCA 61.650 55.000 0.00 0.00 42.51 4.96
489 490 7.175641 CCCCCATATGTCTTATCAGCTTTTTAG 59.824 40.741 1.24 0.00 0.00 1.85
528 529 2.125832 CGCATGCAAGGCCAAAGG 60.126 61.111 19.57 0.00 43.34 3.11
691 702 2.507407 TATTGGTTGCTTCAGGGTCC 57.493 50.000 0.00 0.00 0.00 4.46
693 704 0.178992 TTGGTTGCTTCAGGGTCCTG 60.179 55.000 10.62 10.62 44.86 3.86
726 737 1.381327 AGGAGTAGCCGCTTGCCTA 60.381 57.895 0.00 0.00 43.43 3.93
817 828 1.001293 CTCTACAACACCAGAGCTGCA 59.999 52.381 1.02 0.00 32.46 4.41
991 1044 4.645136 GTCTTTTTGGGGAGTTTCTTCTGT 59.355 41.667 0.00 0.00 0.00 3.41
1049 1105 0.954452 CCACTGGTTTCCTTGCTGAC 59.046 55.000 0.00 0.00 0.00 3.51
1136 1192 3.058914 AGGATTCTCAAACGCAAACTTCG 60.059 43.478 0.00 0.00 0.00 3.79
1439 1495 1.449070 CAGAGATGCAGCGCCTTCA 60.449 57.895 2.29 0.00 0.00 3.02
1951 2033 6.483687 ACAACAACTCGTGATAAACAAGTTC 58.516 36.000 0.00 0.00 30.16 3.01
1975 2057 8.169977 TCCTGAAATTATGGATGCAAATAGAC 57.830 34.615 0.00 0.00 0.00 2.59
2388 2473 7.108847 AGGAAGAAGATAGTCTTGAAACATGG 58.891 38.462 0.00 0.00 36.73 3.66
2389 2474 7.038017 AGGAAGAAGATAGTCTTGAAACATGGA 60.038 37.037 0.00 0.00 36.73 3.41
2390 2475 7.607991 GGAAGAAGATAGTCTTGAAACATGGAA 59.392 37.037 0.00 0.00 36.73 3.53
2393 2478 9.007901 AGAAGATAGTCTTGAAACATGGAAAAG 57.992 33.333 0.00 0.00 36.73 2.27
2394 2479 8.697507 AAGATAGTCTTGAAACATGGAAAAGT 57.302 30.769 0.00 0.00 34.98 2.66
2395 2480 9.793259 AAGATAGTCTTGAAACATGGAAAAGTA 57.207 29.630 0.00 0.00 34.98 2.24
2399 2484 8.519799 AGTCTTGAAACATGGAAAAGTAAAGA 57.480 30.769 0.00 0.00 0.00 2.52
2401 2486 9.185192 GTCTTGAAACATGGAAAAGTAAAGATG 57.815 33.333 0.00 0.00 0.00 2.90
2402 2487 8.912988 TCTTGAAACATGGAAAAGTAAAGATGT 58.087 29.630 0.00 0.00 0.00 3.06
2403 2488 9.185192 CTTGAAACATGGAAAAGTAAAGATGTC 57.815 33.333 0.00 0.00 0.00 3.06
2404 2489 8.463930 TGAAACATGGAAAAGTAAAGATGTCT 57.536 30.769 0.00 0.00 0.00 3.41
2405 2490 8.567948 TGAAACATGGAAAAGTAAAGATGTCTC 58.432 33.333 0.00 0.00 0.00 3.36
2406 2491 6.727824 ACATGGAAAAGTAAAGATGTCTCG 57.272 37.500 0.00 0.00 0.00 4.04
2407 2492 5.643777 ACATGGAAAAGTAAAGATGTCTCGG 59.356 40.000 0.00 0.00 0.00 4.63
2408 2493 4.575885 TGGAAAAGTAAAGATGTCTCGGG 58.424 43.478 0.00 0.00 0.00 5.14
2409 2494 3.939592 GGAAAAGTAAAGATGTCTCGGGG 59.060 47.826 0.00 0.00 0.00 5.73
2410 2495 4.565028 GGAAAAGTAAAGATGTCTCGGGGT 60.565 45.833 0.00 0.00 0.00 4.95
2411 2496 5.337813 GGAAAAGTAAAGATGTCTCGGGGTA 60.338 44.000 0.00 0.00 0.00 3.69
2412 2497 5.952347 AAAGTAAAGATGTCTCGGGGTAT 57.048 39.130 0.00 0.00 0.00 2.73
2413 2498 5.952347 AAGTAAAGATGTCTCGGGGTATT 57.048 39.130 0.00 0.00 0.00 1.89
2414 2499 7.427989 AAAGTAAAGATGTCTCGGGGTATTA 57.572 36.000 0.00 0.00 0.00 0.98
2418 2503 5.485209 AAGATGTCTCGGGGTATTATTCC 57.515 43.478 0.00 0.00 0.00 3.01
2602 2714 5.209318 ACCAAGTGGCTTCCAGATACTGG 62.209 52.174 11.10 11.10 45.43 4.00
2633 2745 9.353999 CATTTATTTTTGCTAGGTGAAGTAACC 57.646 33.333 0.00 0.00 40.85 2.85
2754 2881 6.695429 CATGCCTTGAAGCTCTGTATAGATA 58.305 40.000 0.00 0.00 31.21 1.98
2756 2883 8.473219 CATGCCTTGAAGCTCTGTATAGATATA 58.527 37.037 0.00 0.00 31.21 0.86
2875 3002 2.960384 TCGACACACTTCCTGAAGGTAA 59.040 45.455 11.34 0.00 42.53 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.359653 AGAGTTAGTTTGAGTAGGTTGTTAGTA 57.640 33.333 0.00 0.00 0.00 1.82
20 21 8.247666 AGAGTTAGTTTGAGTAGGTTGTTAGT 57.752 34.615 0.00 0.00 0.00 2.24
23 24 9.091220 AGATAGAGTTAGTTTGAGTAGGTTGTT 57.909 33.333 0.00 0.00 0.00 2.83
24 25 8.653036 AGATAGAGTTAGTTTGAGTAGGTTGT 57.347 34.615 0.00 0.00 0.00 3.32
25 26 8.740906 TGAGATAGAGTTAGTTTGAGTAGGTTG 58.259 37.037 0.00 0.00 0.00 3.77
26 27 8.880991 TGAGATAGAGTTAGTTTGAGTAGGTT 57.119 34.615 0.00 0.00 0.00 3.50
27 28 8.880991 TTGAGATAGAGTTAGTTTGAGTAGGT 57.119 34.615 0.00 0.00 0.00 3.08
28 29 9.179909 TCTTGAGATAGAGTTAGTTTGAGTAGG 57.820 37.037 0.00 0.00 0.00 3.18
32 33 9.658475 CGTATCTTGAGATAGAGTTAGTTTGAG 57.342 37.037 1.04 0.00 37.67 3.02
33 34 9.175312 ACGTATCTTGAGATAGAGTTAGTTTGA 57.825 33.333 1.04 0.00 37.67 2.69
34 35 9.227490 CACGTATCTTGAGATAGAGTTAGTTTG 57.773 37.037 1.04 0.00 37.67 2.93
35 36 8.958506 ACACGTATCTTGAGATAGAGTTAGTTT 58.041 33.333 1.04 0.00 37.67 2.66
36 37 8.508883 ACACGTATCTTGAGATAGAGTTAGTT 57.491 34.615 1.04 0.00 37.67 2.24
37 38 9.781633 ATACACGTATCTTGAGATAGAGTTAGT 57.218 33.333 1.04 3.98 37.67 2.24
47 48 9.333724 TGTAGACATAATACACGTATCTTGAGA 57.666 33.333 0.00 0.00 0.00 3.27
49 50 9.893305 CATGTAGACATAATACACGTATCTTGA 57.107 33.333 0.00 0.00 36.04 3.02
50 51 9.678941 ACATGTAGACATAATACACGTATCTTG 57.321 33.333 0.00 0.00 36.04 3.02
51 52 9.894783 GACATGTAGACATAATACACGTATCTT 57.105 33.333 0.00 0.00 36.04 2.40
52 53 8.512956 GGACATGTAGACATAATACACGTATCT 58.487 37.037 0.00 0.00 36.04 1.98
53 54 8.512956 AGGACATGTAGACATAATACACGTATC 58.487 37.037 0.00 0.00 36.04 2.24
54 55 8.405418 AGGACATGTAGACATAATACACGTAT 57.595 34.615 0.00 0.00 36.04 3.06
55 56 7.812690 AGGACATGTAGACATAATACACGTA 57.187 36.000 0.00 0.00 36.04 3.57
56 57 6.710597 AGGACATGTAGACATAATACACGT 57.289 37.500 0.00 0.00 36.04 4.49
57 58 6.978659 ACAAGGACATGTAGACATAATACACG 59.021 38.462 0.00 0.00 36.04 4.49
58 59 8.718102 AACAAGGACATGTAGACATAATACAC 57.282 34.615 0.00 0.00 36.04 2.90
59 60 9.811995 GTAACAAGGACATGTAGACATAATACA 57.188 33.333 0.00 0.00 37.53 2.29
60 61 9.811995 TGTAACAAGGACATGTAGACATAATAC 57.188 33.333 0.00 0.00 34.26 1.89
62 63 9.905713 ATTGTAACAAGGACATGTAGACATAAT 57.094 29.630 0.00 0.00 34.26 1.28
65 66 9.905713 ATTATTGTAACAAGGACATGTAGACAT 57.094 29.630 0.00 0.00 36.96 3.06
66 67 9.161629 CATTATTGTAACAAGGACATGTAGACA 57.838 33.333 0.00 0.00 32.02 3.41
67 68 9.162764 ACATTATTGTAACAAGGACATGTAGAC 57.837 33.333 0.00 0.00 33.16 2.59
68 69 9.161629 CACATTATTGTAACAAGGACATGTAGA 57.838 33.333 0.00 0.00 33.76 2.59
69 70 7.910162 GCACATTATTGTAACAAGGACATGTAG 59.090 37.037 0.00 0.00 33.76 2.74
70 71 7.413548 CGCACATTATTGTAACAAGGACATGTA 60.414 37.037 0.00 0.00 33.76 2.29
71 72 6.620678 GCACATTATTGTAACAAGGACATGT 58.379 36.000 0.00 0.00 33.76 3.21
72 73 5.738693 CGCACATTATTGTAACAAGGACATG 59.261 40.000 0.00 0.00 33.76 3.21
73 74 5.676079 GCGCACATTATTGTAACAAGGACAT 60.676 40.000 0.30 0.00 33.76 3.06
74 75 4.378978 GCGCACATTATTGTAACAAGGACA 60.379 41.667 0.30 0.00 33.76 4.02
75 76 4.095610 GCGCACATTATTGTAACAAGGAC 58.904 43.478 0.30 0.00 33.76 3.85
76 77 3.753797 TGCGCACATTATTGTAACAAGGA 59.246 39.130 5.66 0.00 33.76 3.36
77 78 4.090138 TGCGCACATTATTGTAACAAGG 57.910 40.909 5.66 0.00 33.76 3.61
78 79 9.054191 CATATATGCGCACATTATTGTAACAAG 57.946 33.333 14.90 0.00 37.74 3.16
79 80 8.778358 TCATATATGCGCACATTATTGTAACAA 58.222 29.630 14.90 0.00 37.74 2.83
80 81 8.316640 TCATATATGCGCACATTATTGTAACA 57.683 30.769 14.90 0.00 37.74 2.41
81 82 8.443160 ACTCATATATGCGCACATTATTGTAAC 58.557 33.333 14.90 0.00 37.74 2.50
82 83 8.546597 ACTCATATATGCGCACATTATTGTAA 57.453 30.769 14.90 0.00 37.74 2.41
83 84 8.546597 AACTCATATATGCGCACATTATTGTA 57.453 30.769 14.90 0.00 37.74 2.41
84 85 7.439157 AACTCATATATGCGCACATTATTGT 57.561 32.000 14.90 4.74 37.74 2.71
85 86 9.824534 TTAAACTCATATATGCGCACATTATTG 57.175 29.630 14.90 5.89 37.74 1.90
86 87 9.825972 GTTAAACTCATATATGCGCACATTATT 57.174 29.630 14.90 0.00 37.74 1.40
87 88 8.998377 TGTTAAACTCATATATGCGCACATTAT 58.002 29.630 14.90 10.02 37.74 1.28
88 89 8.371770 TGTTAAACTCATATATGCGCACATTA 57.628 30.769 14.90 0.60 37.74 1.90
89 90 7.258022 TGTTAAACTCATATATGCGCACATT 57.742 32.000 14.90 0.00 37.74 2.71
90 91 6.859420 TGTTAAACTCATATATGCGCACAT 57.141 33.333 14.90 10.25 40.49 3.21
91 92 6.670077 TTGTTAAACTCATATATGCGCACA 57.330 33.333 14.90 0.00 0.00 4.57
92 93 8.560576 AAATTGTTAAACTCATATATGCGCAC 57.439 30.769 14.90 0.00 0.00 5.34
93 94 9.579768 AAAAATTGTTAAACTCATATATGCGCA 57.420 25.926 14.96 14.96 0.00 6.09
94 95 9.833894 CAAAAATTGTTAAACTCATATATGCGC 57.166 29.630 7.92 0.00 0.00 6.09
95 96 9.833894 GCAAAAATTGTTAAACTCATATATGCG 57.166 29.630 7.92 4.42 0.00 4.73
103 104 8.538856 CGAAATGAGCAAAAATTGTTAAACTCA 58.461 29.630 9.25 9.25 37.33 3.41
104 105 8.751335 TCGAAATGAGCAAAAATTGTTAAACTC 58.249 29.630 0.00 0.00 0.00 3.01
105 106 8.641499 TCGAAATGAGCAAAAATTGTTAAACT 57.359 26.923 0.00 0.00 0.00 2.66
106 107 9.305110 CATCGAAATGAGCAAAAATTGTTAAAC 57.695 29.630 0.00 0.00 34.61 2.01
107 108 8.494347 CCATCGAAATGAGCAAAAATTGTTAAA 58.506 29.630 0.00 0.00 34.61 1.52
108 109 7.655328 ACCATCGAAATGAGCAAAAATTGTTAA 59.345 29.630 0.00 0.00 34.61 2.01
109 110 7.151308 ACCATCGAAATGAGCAAAAATTGTTA 58.849 30.769 0.00 0.00 34.61 2.41
110 111 5.990996 ACCATCGAAATGAGCAAAAATTGTT 59.009 32.000 0.00 0.00 34.61 2.83
111 112 5.540911 ACCATCGAAATGAGCAAAAATTGT 58.459 33.333 0.00 0.00 34.61 2.71
112 113 7.579589 TTACCATCGAAATGAGCAAAAATTG 57.420 32.000 0.00 0.00 34.61 2.32
113 114 8.253113 AGATTACCATCGAAATGAGCAAAAATT 58.747 29.630 0.00 0.00 34.61 1.82
114 115 7.775120 AGATTACCATCGAAATGAGCAAAAAT 58.225 30.769 0.00 0.00 34.61 1.82
115 116 7.156876 AGATTACCATCGAAATGAGCAAAAA 57.843 32.000 0.00 0.00 34.61 1.94
116 117 6.456853 CGAGATTACCATCGAAATGAGCAAAA 60.457 38.462 0.00 0.00 41.40 2.44
117 118 5.006649 CGAGATTACCATCGAAATGAGCAAA 59.993 40.000 0.00 0.00 41.40 3.68
118 119 4.507756 CGAGATTACCATCGAAATGAGCAA 59.492 41.667 0.00 0.00 41.40 3.91
119 120 4.051237 CGAGATTACCATCGAAATGAGCA 58.949 43.478 0.00 0.00 41.40 4.26
120 121 4.299155 TCGAGATTACCATCGAAATGAGC 58.701 43.478 0.00 0.00 44.36 4.26
128 129 5.523916 ACCTCAAAAATCGAGATTACCATCG 59.476 40.000 0.00 0.00 40.26 3.84
129 130 6.538742 TGACCTCAAAAATCGAGATTACCATC 59.461 38.462 0.00 0.00 31.84 3.51
130 131 6.316390 GTGACCTCAAAAATCGAGATTACCAT 59.684 38.462 0.00 0.00 31.84 3.55
131 132 5.642063 GTGACCTCAAAAATCGAGATTACCA 59.358 40.000 0.00 0.00 31.84 3.25
132 133 5.642063 TGTGACCTCAAAAATCGAGATTACC 59.358 40.000 0.00 0.00 31.84 2.85
133 134 6.721571 TGTGACCTCAAAAATCGAGATTAC 57.278 37.500 0.00 0.00 31.84 1.89
134 135 7.921786 AATGTGACCTCAAAAATCGAGATTA 57.078 32.000 0.00 0.00 31.84 1.75
135 136 6.824305 AATGTGACCTCAAAAATCGAGATT 57.176 33.333 0.00 0.00 31.84 2.40
136 137 6.824305 AAATGTGACCTCAAAAATCGAGAT 57.176 33.333 0.00 0.00 31.84 2.75
137 138 6.262049 TGAAAATGTGACCTCAAAAATCGAGA 59.738 34.615 0.00 0.00 31.84 4.04
138 139 6.437928 TGAAAATGTGACCTCAAAAATCGAG 58.562 36.000 0.00 0.00 0.00 4.04
139 140 6.384258 TGAAAATGTGACCTCAAAAATCGA 57.616 33.333 0.00 0.00 0.00 3.59
140 141 8.023128 ACTATGAAAATGTGACCTCAAAAATCG 58.977 33.333 0.00 0.00 0.00 3.34
141 142 9.132521 CACTATGAAAATGTGACCTCAAAAATC 57.867 33.333 0.00 0.00 33.95 2.17
142 143 8.090214 CCACTATGAAAATGTGACCTCAAAAAT 58.910 33.333 0.00 0.00 33.95 1.82
143 144 7.069331 ACCACTATGAAAATGTGACCTCAAAAA 59.931 33.333 0.00 0.00 33.95 1.94
144 145 6.549364 ACCACTATGAAAATGTGACCTCAAAA 59.451 34.615 0.00 0.00 33.95 2.44
145 146 6.016360 CACCACTATGAAAATGTGACCTCAAA 60.016 38.462 0.00 0.00 33.95 2.69
146 147 5.473162 CACCACTATGAAAATGTGACCTCAA 59.527 40.000 0.00 0.00 33.95 3.02
147 148 5.003160 CACCACTATGAAAATGTGACCTCA 58.997 41.667 0.00 0.00 33.95 3.86
148 149 4.396166 CCACCACTATGAAAATGTGACCTC 59.604 45.833 0.00 0.00 33.95 3.85
149 150 4.042809 TCCACCACTATGAAAATGTGACCT 59.957 41.667 0.00 0.00 33.95 3.85
150 151 4.331968 TCCACCACTATGAAAATGTGACC 58.668 43.478 0.00 0.00 33.95 4.02
151 152 5.957842 TTCCACCACTATGAAAATGTGAC 57.042 39.130 0.00 0.00 33.95 3.67
152 153 7.336679 CAGTATTCCACCACTATGAAAATGTGA 59.663 37.037 0.00 0.00 33.95 3.58
153 154 7.415541 CCAGTATTCCACCACTATGAAAATGTG 60.416 40.741 0.00 0.00 0.00 3.21
154 155 6.603201 CCAGTATTCCACCACTATGAAAATGT 59.397 38.462 0.00 0.00 0.00 2.71
155 156 6.828273 TCCAGTATTCCACCACTATGAAAATG 59.172 38.462 0.00 0.00 0.00 2.32
156 157 6.969043 TCCAGTATTCCACCACTATGAAAAT 58.031 36.000 0.00 0.00 0.00 1.82
157 158 6.381498 TCCAGTATTCCACCACTATGAAAA 57.619 37.500 0.00 0.00 0.00 2.29
158 159 6.381498 TTCCAGTATTCCACCACTATGAAA 57.619 37.500 0.00 0.00 0.00 2.69
159 160 6.575244 ATTCCAGTATTCCACCACTATGAA 57.425 37.500 0.00 0.00 0.00 2.57
160 161 7.073208 TCTATTCCAGTATTCCACCACTATGA 58.927 38.462 0.00 0.00 0.00 2.15
161 162 7.303182 TCTATTCCAGTATTCCACCACTATG 57.697 40.000 0.00 0.00 0.00 2.23
162 163 9.615660 TTATCTATTCCAGTATTCCACCACTAT 57.384 33.333 0.00 0.00 0.00 2.12
163 164 9.442062 TTTATCTATTCCAGTATTCCACCACTA 57.558 33.333 0.00 0.00 0.00 2.74
164 165 7.931015 TTATCTATTCCAGTATTCCACCACT 57.069 36.000 0.00 0.00 0.00 4.00
165 166 8.974060 TTTTATCTATTCCAGTATTCCACCAC 57.026 34.615 0.00 0.00 0.00 4.16
166 167 9.627123 CTTTTTATCTATTCCAGTATTCCACCA 57.373 33.333 0.00 0.00 0.00 4.17
167 168 9.628500 ACTTTTTATCTATTCCAGTATTCCACC 57.372 33.333 0.00 0.00 0.00 4.61
174 175 9.174166 GCCTGAAACTTTTTATCTATTCCAGTA 57.826 33.333 0.00 0.00 0.00 2.74
175 176 7.148239 CGCCTGAAACTTTTTATCTATTCCAGT 60.148 37.037 0.00 0.00 0.00 4.00
176 177 7.189512 CGCCTGAAACTTTTTATCTATTCCAG 58.810 38.462 0.00 0.00 0.00 3.86
177 178 6.404293 GCGCCTGAAACTTTTTATCTATTCCA 60.404 38.462 0.00 0.00 0.00 3.53
178 179 5.971792 GCGCCTGAAACTTTTTATCTATTCC 59.028 40.000 0.00 0.00 0.00 3.01
179 180 6.551736 TGCGCCTGAAACTTTTTATCTATTC 58.448 36.000 4.18 0.00 0.00 1.75
180 181 6.509418 TGCGCCTGAAACTTTTTATCTATT 57.491 33.333 4.18 0.00 0.00 1.73
181 182 6.072175 TGTTGCGCCTGAAACTTTTTATCTAT 60.072 34.615 4.18 0.00 34.44 1.98
182 183 5.239744 TGTTGCGCCTGAAACTTTTTATCTA 59.760 36.000 4.18 0.00 34.44 1.98
183 184 4.037446 TGTTGCGCCTGAAACTTTTTATCT 59.963 37.500 4.18 0.00 34.44 1.98
184 185 4.295051 TGTTGCGCCTGAAACTTTTTATC 58.705 39.130 4.18 0.00 34.44 1.75
185 186 4.314740 TGTTGCGCCTGAAACTTTTTAT 57.685 36.364 4.18 0.00 34.44 1.40
186 187 3.784701 TGTTGCGCCTGAAACTTTTTA 57.215 38.095 4.18 0.00 34.44 1.52
187 188 2.663826 TGTTGCGCCTGAAACTTTTT 57.336 40.000 4.18 0.00 34.44 1.94
188 189 2.663826 TTGTTGCGCCTGAAACTTTT 57.336 40.000 4.18 0.00 34.44 2.27
189 190 2.663826 TTTGTTGCGCCTGAAACTTT 57.336 40.000 4.18 0.00 34.44 2.66
190 191 2.663826 TTTTGTTGCGCCTGAAACTT 57.336 40.000 4.18 0.00 34.44 2.66
191 192 2.663826 TTTTTGTTGCGCCTGAAACT 57.336 40.000 4.18 0.00 34.44 2.66
192 193 4.506288 ACTTATTTTTGTTGCGCCTGAAAC 59.494 37.500 4.18 2.64 33.87 2.78
193 194 4.688021 ACTTATTTTTGTTGCGCCTGAAA 58.312 34.783 4.18 0.00 0.00 2.69
194 195 4.314740 ACTTATTTTTGTTGCGCCTGAA 57.685 36.364 4.18 0.00 0.00 3.02
195 196 5.637006 ATACTTATTTTTGTTGCGCCTGA 57.363 34.783 4.18 0.00 0.00 3.86
196 197 6.551736 AGTATACTTATTTTTGTTGCGCCTG 58.448 36.000 4.18 0.00 0.00 4.85
197 198 6.373216 TGAGTATACTTATTTTTGTTGCGCCT 59.627 34.615 6.88 0.00 0.00 5.52
198 199 6.468000 GTGAGTATACTTATTTTTGTTGCGCC 59.532 38.462 6.88 0.00 0.00 6.53
199 200 7.241376 AGTGAGTATACTTATTTTTGTTGCGC 58.759 34.615 6.88 0.00 0.00 6.09
200 201 7.903431 GGAGTGAGTATACTTATTTTTGTTGCG 59.097 37.037 6.88 0.00 0.00 4.85
201 202 8.182227 GGGAGTGAGTATACTTATTTTTGTTGC 58.818 37.037 6.88 0.00 0.00 4.17
202 203 9.449719 AGGGAGTGAGTATACTTATTTTTGTTG 57.550 33.333 6.88 0.00 0.00 3.33
229 230 3.269178 CAAAAGCCTGACCTTGCAAAAA 58.731 40.909 0.00 0.00 0.00 1.94
230 231 2.903798 CAAAAGCCTGACCTTGCAAAA 58.096 42.857 0.00 0.00 0.00 2.44
231 232 1.473080 GCAAAAGCCTGACCTTGCAAA 60.473 47.619 0.00 0.00 42.91 3.68
232 233 0.104671 GCAAAAGCCTGACCTTGCAA 59.895 50.000 0.00 0.00 42.91 4.08
233 234 1.741525 GCAAAAGCCTGACCTTGCA 59.258 52.632 0.98 0.00 42.91 4.08
234 235 0.104671 TTGCAAAAGCCTGACCTTGC 59.895 50.000 0.00 0.00 43.52 4.01
235 236 1.870993 GCTTGCAAAAGCCTGACCTTG 60.871 52.381 0.00 0.00 39.81 3.61
236 237 0.390492 GCTTGCAAAAGCCTGACCTT 59.610 50.000 0.00 0.00 39.81 3.50
237 238 2.044452 GCTTGCAAAAGCCTGACCT 58.956 52.632 0.00 0.00 39.81 3.85
238 239 4.661461 GCTTGCAAAAGCCTGACC 57.339 55.556 0.00 0.00 39.81 4.02
245 246 4.377708 GGGCCGGGCTTGCAAAAG 62.378 66.667 28.80 0.00 0.00 2.27
250 251 4.680237 GTTTTGGGCCGGGCTTGC 62.680 66.667 28.80 12.13 0.00 4.01
251 252 4.002506 GGTTTTGGGCCGGGCTTG 62.003 66.667 28.80 0.00 0.00 4.01
261 262 4.994756 AGCCAGGCCGGGTTTTGG 62.995 66.667 23.81 12.97 45.83 3.28
262 263 3.683937 CAGCCAGGCCGGGTTTTG 61.684 66.667 23.81 15.06 45.83 2.44
263 264 3.897122 TCAGCCAGGCCGGGTTTT 61.897 61.111 23.81 6.84 45.83 2.43
264 265 4.660938 GTCAGCCAGGCCGGGTTT 62.661 66.667 23.81 9.49 45.83 3.27
267 268 2.746375 ATTAGTCAGCCAGGCCGGG 61.746 63.158 18.94 18.94 34.06 5.73
268 269 1.524621 CATTAGTCAGCCAGGCCGG 60.525 63.158 8.22 9.03 38.11 6.13
269 270 0.107456 ATCATTAGTCAGCCAGGCCG 59.893 55.000 8.22 0.00 0.00 6.13
270 271 1.141657 TGATCATTAGTCAGCCAGGCC 59.858 52.381 8.22 0.00 0.00 5.19
271 272 2.492012 CTGATCATTAGTCAGCCAGGC 58.508 52.381 1.84 1.84 36.95 4.85
272 273 2.437281 ACCTGATCATTAGTCAGCCAGG 59.563 50.000 0.00 0.00 41.33 4.45
273 274 3.834489 ACCTGATCATTAGTCAGCCAG 57.166 47.619 0.00 0.00 41.33 4.85
274 275 4.574674 AAACCTGATCATTAGTCAGCCA 57.425 40.909 0.00 0.00 41.33 4.75
275 276 4.508124 CGTAAACCTGATCATTAGTCAGCC 59.492 45.833 0.00 0.00 41.33 4.85
276 277 5.109903 ACGTAAACCTGATCATTAGTCAGC 58.890 41.667 0.00 0.00 41.33 4.26
277 278 6.253727 GTGACGTAAACCTGATCATTAGTCAG 59.746 42.308 13.89 0.00 42.11 3.51
278 279 6.097356 GTGACGTAAACCTGATCATTAGTCA 58.903 40.000 0.00 5.96 33.28 3.41
279 280 5.229469 CGTGACGTAAACCTGATCATTAGTC 59.771 44.000 0.00 3.71 0.00 2.59
280 281 5.100259 CGTGACGTAAACCTGATCATTAGT 58.900 41.667 0.00 0.00 0.00 2.24
281 282 5.337554 TCGTGACGTAAACCTGATCATTAG 58.662 41.667 4.40 0.00 0.00 1.73
282 283 5.313520 TCGTGACGTAAACCTGATCATTA 57.686 39.130 4.40 0.00 0.00 1.90
283 284 4.174009 CTCGTGACGTAAACCTGATCATT 58.826 43.478 4.40 0.00 0.00 2.57
284 285 3.770666 CTCGTGACGTAAACCTGATCAT 58.229 45.455 4.40 0.00 0.00 2.45
285 286 2.670229 GCTCGTGACGTAAACCTGATCA 60.670 50.000 4.40 0.00 0.00 2.92
286 287 1.918609 GCTCGTGACGTAAACCTGATC 59.081 52.381 4.40 0.00 0.00 2.92
287 288 1.271379 TGCTCGTGACGTAAACCTGAT 59.729 47.619 4.40 0.00 0.00 2.90
288 289 0.669619 TGCTCGTGACGTAAACCTGA 59.330 50.000 4.40 0.00 0.00 3.86
289 290 0.782384 GTGCTCGTGACGTAAACCTG 59.218 55.000 4.40 0.00 0.00 4.00
290 291 0.319297 GGTGCTCGTGACGTAAACCT 60.319 55.000 4.40 0.00 0.00 3.50
291 292 0.319297 AGGTGCTCGTGACGTAAACC 60.319 55.000 4.40 10.88 0.00 3.27
292 293 2.336554 TAGGTGCTCGTGACGTAAAC 57.663 50.000 4.40 1.53 0.00 2.01
293 294 3.581024 ATTAGGTGCTCGTGACGTAAA 57.419 42.857 4.40 0.00 30.01 2.01
294 295 3.581024 AATTAGGTGCTCGTGACGTAA 57.419 42.857 4.40 0.00 0.00 3.18
295 296 4.700268 TTAATTAGGTGCTCGTGACGTA 57.300 40.909 4.40 0.00 0.00 3.57
296 297 3.581024 TTAATTAGGTGCTCGTGACGT 57.419 42.857 4.40 0.00 0.00 4.34
297 298 4.914312 TTTTAATTAGGTGCTCGTGACG 57.086 40.909 0.00 0.00 0.00 4.35
298 299 6.027749 CCAATTTTAATTAGGTGCTCGTGAC 58.972 40.000 0.00 0.00 0.00 3.67
299 300 5.124776 CCCAATTTTAATTAGGTGCTCGTGA 59.875 40.000 0.00 0.00 0.00 4.35
300 301 5.339990 CCCAATTTTAATTAGGTGCTCGTG 58.660 41.667 0.00 0.00 0.00 4.35
301 302 4.142249 GCCCAATTTTAATTAGGTGCTCGT 60.142 41.667 2.44 0.00 30.98 4.18
302 303 4.097892 AGCCCAATTTTAATTAGGTGCTCG 59.902 41.667 2.44 0.00 30.98 5.03
303 304 5.360999 AGAGCCCAATTTTAATTAGGTGCTC 59.639 40.000 20.65 20.65 38.30 4.26
304 305 5.272402 AGAGCCCAATTTTAATTAGGTGCT 58.728 37.500 2.44 9.00 30.98 4.40
305 306 5.598416 AGAGCCCAATTTTAATTAGGTGC 57.402 39.130 2.44 5.77 30.98 5.01
306 307 8.697507 AGATAGAGCCCAATTTTAATTAGGTG 57.302 34.615 2.44 0.00 30.98 4.00
307 308 9.715119 AAAGATAGAGCCCAATTTTAATTAGGT 57.285 29.630 2.44 0.00 30.98 3.08
312 313 9.479549 TCTCAAAAGATAGAGCCCAATTTTAAT 57.520 29.630 0.00 0.00 0.00 1.40
313 314 8.739972 GTCTCAAAAGATAGAGCCCAATTTTAA 58.260 33.333 0.00 0.00 33.08 1.52
314 315 7.339466 GGTCTCAAAAGATAGAGCCCAATTTTA 59.661 37.037 0.00 0.00 34.83 1.52
315 316 6.153510 GGTCTCAAAAGATAGAGCCCAATTTT 59.846 38.462 0.00 0.00 34.83 1.82
316 317 5.654209 GGTCTCAAAAGATAGAGCCCAATTT 59.346 40.000 0.00 0.00 34.83 1.82
317 318 5.196695 GGTCTCAAAAGATAGAGCCCAATT 58.803 41.667 0.00 0.00 34.83 2.32
318 319 4.786425 GGTCTCAAAAGATAGAGCCCAAT 58.214 43.478 0.00 0.00 34.83 3.16
319 320 4.222124 GGTCTCAAAAGATAGAGCCCAA 57.778 45.455 0.00 0.00 34.83 4.12
320 321 3.914426 GGTCTCAAAAGATAGAGCCCA 57.086 47.619 0.00 0.00 34.83 5.36
323 324 2.205911 GCGGGTCTCAAAAGATAGAGC 58.794 52.381 0.00 0.00 39.07 4.09
324 325 3.190874 GTGCGGGTCTCAAAAGATAGAG 58.809 50.000 0.00 0.00 33.08 2.43
325 326 2.093658 GGTGCGGGTCTCAAAAGATAGA 60.094 50.000 0.00 0.00 33.08 1.98
326 327 2.280628 GGTGCGGGTCTCAAAAGATAG 58.719 52.381 0.00 0.00 33.08 2.08
327 328 1.626321 TGGTGCGGGTCTCAAAAGATA 59.374 47.619 0.00 0.00 33.08 1.98
328 329 0.400213 TGGTGCGGGTCTCAAAAGAT 59.600 50.000 0.00 0.00 33.08 2.40
329 330 0.400213 ATGGTGCGGGTCTCAAAAGA 59.600 50.000 0.00 0.00 0.00 2.52
330 331 2.107950 TATGGTGCGGGTCTCAAAAG 57.892 50.000 0.00 0.00 0.00 2.27
331 332 2.799126 ATATGGTGCGGGTCTCAAAA 57.201 45.000 0.00 0.00 0.00 2.44
332 333 2.752354 CAAATATGGTGCGGGTCTCAAA 59.248 45.455 0.00 0.00 0.00 2.69
333 334 2.026729 TCAAATATGGTGCGGGTCTCAA 60.027 45.455 0.00 0.00 0.00 3.02
334 335 1.557371 TCAAATATGGTGCGGGTCTCA 59.443 47.619 0.00 0.00 0.00 3.27
335 336 2.158957 TCTCAAATATGGTGCGGGTCTC 60.159 50.000 0.00 0.00 0.00 3.36
336 337 1.837439 TCTCAAATATGGTGCGGGTCT 59.163 47.619 0.00 0.00 0.00 3.85
337 338 2.158957 TCTCTCAAATATGGTGCGGGTC 60.159 50.000 0.00 0.00 0.00 4.46
338 339 1.837439 TCTCTCAAATATGGTGCGGGT 59.163 47.619 0.00 0.00 0.00 5.28
339 340 2.213499 GTCTCTCAAATATGGTGCGGG 58.787 52.381 0.00 0.00 0.00 6.13
340 341 2.213499 GGTCTCTCAAATATGGTGCGG 58.787 52.381 0.00 0.00 0.00 5.69
341 342 2.905075 TGGTCTCTCAAATATGGTGCG 58.095 47.619 0.00 0.00 0.00 5.34
342 343 3.378427 GGTTGGTCTCTCAAATATGGTGC 59.622 47.826 0.00 0.00 0.00 5.01
343 344 4.848357 AGGTTGGTCTCTCAAATATGGTG 58.152 43.478 0.00 0.00 0.00 4.17
344 345 5.520748 AAGGTTGGTCTCTCAAATATGGT 57.479 39.130 0.00 0.00 0.00 3.55
345 346 6.038714 GCTTAAGGTTGGTCTCTCAAATATGG 59.961 42.308 4.29 0.00 0.00 2.74
346 347 6.038714 GGCTTAAGGTTGGTCTCTCAAATATG 59.961 42.308 4.29 0.00 0.00 1.78
347 348 6.122964 GGCTTAAGGTTGGTCTCTCAAATAT 58.877 40.000 4.29 0.00 0.00 1.28
348 349 5.013704 TGGCTTAAGGTTGGTCTCTCAAATA 59.986 40.000 4.29 0.00 0.00 1.40
349 350 4.202567 TGGCTTAAGGTTGGTCTCTCAAAT 60.203 41.667 4.29 0.00 0.00 2.32
350 351 3.137544 TGGCTTAAGGTTGGTCTCTCAAA 59.862 43.478 4.29 0.00 0.00 2.69
351 352 2.708861 TGGCTTAAGGTTGGTCTCTCAA 59.291 45.455 4.29 0.00 0.00 3.02
352 353 2.334977 TGGCTTAAGGTTGGTCTCTCA 58.665 47.619 4.29 0.00 0.00 3.27
353 354 3.339141 CTTGGCTTAAGGTTGGTCTCTC 58.661 50.000 4.29 0.00 32.56 3.20
354 355 2.553247 GCTTGGCTTAAGGTTGGTCTCT 60.553 50.000 4.29 0.00 36.87 3.10
355 356 1.813178 GCTTGGCTTAAGGTTGGTCTC 59.187 52.381 4.29 0.00 36.87 3.36
356 357 1.547901 GGCTTGGCTTAAGGTTGGTCT 60.548 52.381 4.29 0.00 36.87 3.85
357 358 0.888619 GGCTTGGCTTAAGGTTGGTC 59.111 55.000 4.29 0.00 36.87 4.02
358 359 0.541998 GGGCTTGGCTTAAGGTTGGT 60.542 55.000 4.29 0.00 36.87 3.67
359 360 0.541764 TGGGCTTGGCTTAAGGTTGG 60.542 55.000 4.29 0.00 36.87 3.77
360 361 0.603065 GTGGGCTTGGCTTAAGGTTG 59.397 55.000 4.29 0.00 36.87 3.77
361 362 0.187361 TGTGGGCTTGGCTTAAGGTT 59.813 50.000 4.29 0.00 36.87 3.50
362 363 0.539669 GTGTGGGCTTGGCTTAAGGT 60.540 55.000 4.29 0.00 36.87 3.50
363 364 0.251341 AGTGTGGGCTTGGCTTAAGG 60.251 55.000 4.29 0.00 36.87 2.69
364 365 1.620822 AAGTGTGGGCTTGGCTTAAG 58.379 50.000 0.00 0.00 39.49 1.85
365 366 1.686052 CAAAGTGTGGGCTTGGCTTAA 59.314 47.619 0.00 0.00 0.00 1.85
366 367 1.327303 CAAAGTGTGGGCTTGGCTTA 58.673 50.000 0.00 0.00 0.00 3.09
367 368 2.031674 GCAAAGTGTGGGCTTGGCTT 62.032 55.000 0.00 0.00 41.09 4.35
368 369 2.501602 GCAAAGTGTGGGCTTGGCT 61.502 57.895 0.00 0.00 41.09 4.75
369 370 2.029518 GCAAAGTGTGGGCTTGGC 59.970 61.111 0.00 0.00 38.12 4.52
370 371 2.736531 GGCAAAGTGTGGGCTTGG 59.263 61.111 0.00 0.00 0.00 3.61
371 372 1.526575 ATCGGCAAAGTGTGGGCTTG 61.527 55.000 0.00 0.00 0.00 4.01
372 373 1.228552 ATCGGCAAAGTGTGGGCTT 60.229 52.632 0.00 0.00 0.00 4.35
373 374 1.675641 GATCGGCAAAGTGTGGGCT 60.676 57.895 0.00 0.00 0.00 5.19
374 375 1.244019 AAGATCGGCAAAGTGTGGGC 61.244 55.000 0.00 0.00 0.00 5.36
375 376 0.804989 GAAGATCGGCAAAGTGTGGG 59.195 55.000 0.00 0.00 0.00 4.61
376 377 1.522668 TGAAGATCGGCAAAGTGTGG 58.477 50.000 0.00 0.00 0.00 4.17
377 378 5.490139 AATATGAAGATCGGCAAAGTGTG 57.510 39.130 0.00 0.00 0.00 3.82
378 379 6.375455 AGAAAATATGAAGATCGGCAAAGTGT 59.625 34.615 0.00 0.00 0.00 3.55
379 380 6.789262 AGAAAATATGAAGATCGGCAAAGTG 58.211 36.000 0.00 0.00 0.00 3.16
380 381 6.038714 GGAGAAAATATGAAGATCGGCAAAGT 59.961 38.462 0.00 0.00 0.00 2.66
381 382 6.433766 GGAGAAAATATGAAGATCGGCAAAG 58.566 40.000 0.00 0.00 0.00 2.77
382 383 5.299279 GGGAGAAAATATGAAGATCGGCAAA 59.701 40.000 0.00 0.00 0.00 3.68
383 384 4.821805 GGGAGAAAATATGAAGATCGGCAA 59.178 41.667 0.00 0.00 0.00 4.52
384 385 4.389374 GGGAGAAAATATGAAGATCGGCA 58.611 43.478 0.00 0.00 0.00 5.69
385 386 3.753797 GGGGAGAAAATATGAAGATCGGC 59.246 47.826 0.00 0.00 0.00 5.54
386 387 4.202461 TGGGGGAGAAAATATGAAGATCGG 60.202 45.833 0.00 0.00 0.00 4.18
387 388 4.973168 TGGGGGAGAAAATATGAAGATCG 58.027 43.478 0.00 0.00 0.00 3.69
388 389 6.210185 CCAATGGGGGAGAAAATATGAAGATC 59.790 42.308 0.00 0.00 0.00 2.75
389 390 6.080009 CCAATGGGGGAGAAAATATGAAGAT 58.920 40.000 0.00 0.00 0.00 2.40
390 391 5.043432 ACCAATGGGGGAGAAAATATGAAGA 60.043 40.000 3.55 0.00 42.91 2.87
391 392 5.211201 ACCAATGGGGGAGAAAATATGAAG 58.789 41.667 3.55 0.00 42.91 3.02
392 393 5.043432 AGACCAATGGGGGAGAAAATATGAA 60.043 40.000 3.55 0.00 42.91 2.57
393 394 4.482025 AGACCAATGGGGGAGAAAATATGA 59.518 41.667 3.55 0.00 42.91 2.15
394 395 4.808042 AGACCAATGGGGGAGAAAATATG 58.192 43.478 3.55 0.00 42.91 1.78
395 396 5.043432 TGAAGACCAATGGGGGAGAAAATAT 60.043 40.000 3.55 0.00 42.91 1.28
396 397 4.293634 TGAAGACCAATGGGGGAGAAAATA 59.706 41.667 3.55 0.00 42.91 1.40
397 398 3.077391 TGAAGACCAATGGGGGAGAAAAT 59.923 43.478 3.55 0.00 42.91 1.82
398 399 2.448961 TGAAGACCAATGGGGGAGAAAA 59.551 45.455 3.55 0.00 42.91 2.29
399 400 2.069775 TGAAGACCAATGGGGGAGAAA 58.930 47.619 3.55 0.00 42.91 2.52
400 401 1.354368 GTGAAGACCAATGGGGGAGAA 59.646 52.381 3.55 0.00 42.91 2.87
401 402 0.991920 GTGAAGACCAATGGGGGAGA 59.008 55.000 3.55 0.00 42.91 3.71
402 403 0.698238 TGTGAAGACCAATGGGGGAG 59.302 55.000 3.55 0.00 42.91 4.30
403 404 1.075374 CTTGTGAAGACCAATGGGGGA 59.925 52.381 3.55 0.00 42.91 4.81
404 405 1.549203 CTTGTGAAGACCAATGGGGG 58.451 55.000 3.55 0.00 42.91 5.40
405 406 0.890683 GCTTGTGAAGACCAATGGGG 59.109 55.000 3.55 0.00 44.81 4.96
406 407 0.523072 CGCTTGTGAAGACCAATGGG 59.477 55.000 3.55 0.00 41.29 4.00
407 408 0.109597 GCGCTTGTGAAGACCAATGG 60.110 55.000 0.00 0.00 0.00 3.16
408 409 0.109597 GGCGCTTGTGAAGACCAATG 60.110 55.000 7.64 0.00 0.00 2.82
409 410 0.537143 TGGCGCTTGTGAAGACCAAT 60.537 50.000 7.64 0.00 34.53 3.16
410 411 0.537143 ATGGCGCTTGTGAAGACCAA 60.537 50.000 7.64 0.00 38.99 3.67
411 412 1.073025 ATGGCGCTTGTGAAGACCA 59.927 52.632 7.64 0.00 39.57 4.02
412 413 0.955428 TCATGGCGCTTGTGAAGACC 60.955 55.000 7.64 0.00 0.00 3.85
413 414 0.874390 TTCATGGCGCTTGTGAAGAC 59.126 50.000 7.64 0.00 0.00 3.01
414 415 1.825090 ATTCATGGCGCTTGTGAAGA 58.175 45.000 20.73 6.48 35.56 2.87
415 416 3.065786 ACATATTCATGGCGCTTGTGAAG 59.934 43.478 20.73 13.39 35.56 3.02
416 417 3.016031 ACATATTCATGGCGCTTGTGAA 58.984 40.909 19.28 19.28 36.39 3.18
417 418 2.355444 CACATATTCATGGCGCTTGTGA 59.645 45.455 7.64 6.59 36.06 3.58
418 419 2.723209 CACATATTCATGGCGCTTGTG 58.277 47.619 7.64 3.97 36.39 3.33
419 420 1.066002 GCACATATTCATGGCGCTTGT 59.934 47.619 7.64 0.00 36.39 3.16
420 421 1.335810 AGCACATATTCATGGCGCTTG 59.664 47.619 7.64 5.90 40.27 4.01
421 422 1.335810 CAGCACATATTCATGGCGCTT 59.664 47.619 7.64 0.00 40.86 4.68
422 423 0.949397 CAGCACATATTCATGGCGCT 59.051 50.000 7.64 0.00 42.51 5.92
423 424 0.662374 GCAGCACATATTCATGGCGC 60.662 55.000 0.00 0.00 36.39 6.53
424 425 0.664224 TGCAGCACATATTCATGGCG 59.336 50.000 0.00 0.00 36.39 5.69
425 426 2.035449 ACATGCAGCACATATTCATGGC 59.965 45.455 0.00 0.00 38.92 4.40
426 427 3.552068 CCACATGCAGCACATATTCATGG 60.552 47.826 0.00 0.00 38.92 3.66
427 428 3.067601 ACCACATGCAGCACATATTCATG 59.932 43.478 0.00 0.00 36.64 3.07
428 429 3.293337 ACCACATGCAGCACATATTCAT 58.707 40.909 0.00 0.00 36.64 2.57
429 430 2.725637 ACCACATGCAGCACATATTCA 58.274 42.857 0.00 0.00 36.64 2.57
430 431 3.379372 AGAACCACATGCAGCACATATTC 59.621 43.478 0.00 0.00 36.64 1.75
431 432 3.129813 CAGAACCACATGCAGCACATATT 59.870 43.478 0.00 0.00 36.64 1.28
432 433 2.686405 CAGAACCACATGCAGCACATAT 59.314 45.455 0.00 0.00 36.64 1.78
433 434 2.086094 CAGAACCACATGCAGCACATA 58.914 47.619 0.00 0.00 36.64 2.29
434 435 0.885879 CAGAACCACATGCAGCACAT 59.114 50.000 0.00 0.00 40.66 3.21
435 436 1.798234 GCAGAACCACATGCAGCACA 61.798 55.000 0.00 0.00 42.11 4.57
436 437 1.080974 GCAGAACCACATGCAGCAC 60.081 57.895 0.00 0.00 42.11 4.40
437 438 1.528776 TGCAGAACCACATGCAGCA 60.529 52.632 0.00 0.00 46.97 4.41
438 439 3.357919 TGCAGAACCACATGCAGC 58.642 55.556 0.00 0.00 46.97 5.25
441 442 0.038892 CCACTTGCAGAACCACATGC 60.039 55.000 0.00 0.00 42.86 4.06
442 443 1.321474 ACCACTTGCAGAACCACATG 58.679 50.000 0.00 0.00 0.00 3.21
443 444 1.956477 GAACCACTTGCAGAACCACAT 59.044 47.619 0.00 0.00 0.00 3.21
444 445 1.388547 GAACCACTTGCAGAACCACA 58.611 50.000 0.00 0.00 0.00 4.17
445 446 0.668535 GGAACCACTTGCAGAACCAC 59.331 55.000 0.00 0.00 0.00 4.16
446 447 3.109847 GGAACCACTTGCAGAACCA 57.890 52.632 0.00 0.00 0.00 3.67
460 461 4.042187 AGCTGATAAGACATATGGGGGAAC 59.958 45.833 7.80 0.00 0.00 3.62
461 462 4.242811 AGCTGATAAGACATATGGGGGAA 58.757 43.478 7.80 0.00 0.00 3.97
462 463 3.874316 AGCTGATAAGACATATGGGGGA 58.126 45.455 7.80 0.00 0.00 4.81
463 464 4.647564 AAGCTGATAAGACATATGGGGG 57.352 45.455 7.80 0.00 0.00 5.40
464 465 6.966534 AAAAAGCTGATAAGACATATGGGG 57.033 37.500 7.80 0.00 0.00 4.96
465 466 7.229306 TGCTAAAAAGCTGATAAGACATATGGG 59.771 37.037 7.80 0.00 35.49 4.00
466 467 8.072567 GTGCTAAAAAGCTGATAAGACATATGG 58.927 37.037 7.80 0.00 35.49 2.74
467 468 8.615211 TGTGCTAAAAAGCTGATAAGACATATG 58.385 33.333 0.00 0.00 35.49 1.78
468 469 8.737168 TGTGCTAAAAAGCTGATAAGACATAT 57.263 30.769 0.00 0.00 35.49 1.78
469 470 8.560355 TTGTGCTAAAAAGCTGATAAGACATA 57.440 30.769 0.00 0.00 35.49 2.29
470 471 7.175641 ACTTGTGCTAAAAAGCTGATAAGACAT 59.824 33.333 0.00 0.00 35.49 3.06
471 472 6.486657 ACTTGTGCTAAAAAGCTGATAAGACA 59.513 34.615 0.00 0.00 35.49 3.41
472 473 6.798959 CACTTGTGCTAAAAAGCTGATAAGAC 59.201 38.462 0.00 0.00 35.49 3.01
473 474 6.072508 CCACTTGTGCTAAAAAGCTGATAAGA 60.073 38.462 0.00 0.00 35.49 2.10
474 475 6.088824 CCACTTGTGCTAAAAAGCTGATAAG 58.911 40.000 0.00 0.00 35.49 1.73
475 476 5.534654 ACCACTTGTGCTAAAAAGCTGATAA 59.465 36.000 0.00 0.00 35.49 1.75
489 490 0.740737 ACTTGCAGAACCACTTGTGC 59.259 50.000 0.00 0.00 45.01 4.57
528 529 2.338785 GCCCTTGGCTCAGTCAAGC 61.339 63.158 14.02 0.00 46.69 4.01
691 702 0.815734 CCTCTGGGAAATGCTTGCAG 59.184 55.000 0.87 0.00 33.58 4.41
693 704 1.101331 CTCCTCTGGGAAATGCTTGC 58.899 55.000 0.00 0.00 41.69 4.01
726 737 0.532862 CGAAGTTGTGGCAGGACTGT 60.533 55.000 3.70 0.00 0.00 3.55
796 807 1.001406 GCAGCTCTGGTGTTGTAGAGT 59.999 52.381 0.00 0.00 41.88 3.24
991 1044 2.918345 GCGCCTCCATTGCAACACA 61.918 57.895 0.00 0.00 0.00 3.72
1049 1105 0.237498 GGAGTTGGACGCCTTTTTCG 59.763 55.000 0.00 0.00 35.03 3.46
1136 1192 2.701163 GATGACGTCGAGGATGGCCC 62.701 65.000 12.85 0.00 33.31 5.80
1439 1495 3.412386 GGCTGTGGTTGATAGTTGAACT 58.588 45.455 2.37 2.37 0.00 3.01
1812 1891 1.507300 AGATATCTCTGCCCCCTGACT 59.493 52.381 0.00 0.00 0.00 3.41
1951 2033 7.373493 GGTCTATTTGCATCCATAATTTCAGG 58.627 38.462 0.00 0.00 0.00 3.86
1975 2057 2.420129 CCAAAGGACCGAGATTGTAGGG 60.420 54.545 0.00 0.00 0.00 3.53
2070 2155 5.425196 TCACAATCTGATCAACCATCTCA 57.575 39.130 0.00 0.00 31.92 3.27
2388 2473 4.576879 ACCCCGAGACATCTTTACTTTTC 58.423 43.478 0.00 0.00 0.00 2.29
2389 2474 4.635699 ACCCCGAGACATCTTTACTTTT 57.364 40.909 0.00 0.00 0.00 2.27
2390 2475 5.952347 ATACCCCGAGACATCTTTACTTT 57.048 39.130 0.00 0.00 0.00 2.66
2393 2478 6.872547 GGAATAATACCCCGAGACATCTTTAC 59.127 42.308 0.00 0.00 0.00 2.01
2394 2479 6.555738 TGGAATAATACCCCGAGACATCTTTA 59.444 38.462 0.00 0.00 0.00 1.85
2395 2480 5.368523 TGGAATAATACCCCGAGACATCTTT 59.631 40.000 0.00 0.00 0.00 2.52
2397 2482 4.489737 TGGAATAATACCCCGAGACATCT 58.510 43.478 0.00 0.00 0.00 2.90
2398 2483 4.884668 TGGAATAATACCCCGAGACATC 57.115 45.455 0.00 0.00 0.00 3.06
2399 2484 4.844085 TCATGGAATAATACCCCGAGACAT 59.156 41.667 0.00 0.00 0.00 3.06
2401 2486 4.822026 CTCATGGAATAATACCCCGAGAC 58.178 47.826 0.00 0.00 30.96 3.36
2402 2487 3.260884 GCTCATGGAATAATACCCCGAGA 59.739 47.826 0.00 0.00 30.96 4.04
2403 2488 3.261897 AGCTCATGGAATAATACCCCGAG 59.738 47.826 0.00 0.00 0.00 4.63
2404 2489 3.248024 AGCTCATGGAATAATACCCCGA 58.752 45.455 0.00 0.00 0.00 5.14
2405 2490 3.703001 AGCTCATGGAATAATACCCCG 57.297 47.619 0.00 0.00 0.00 5.73
2406 2491 3.507622 GCAAGCTCATGGAATAATACCCC 59.492 47.826 0.00 0.00 0.00 4.95
2407 2492 3.507622 GGCAAGCTCATGGAATAATACCC 59.492 47.826 0.00 0.00 0.00 3.69
2408 2493 4.401925 AGGCAAGCTCATGGAATAATACC 58.598 43.478 0.00 0.00 0.00 2.73
2409 2494 4.153117 CGAGGCAAGCTCATGGAATAATAC 59.847 45.833 0.00 0.00 0.00 1.89
2410 2495 4.040339 TCGAGGCAAGCTCATGGAATAATA 59.960 41.667 0.00 0.00 0.00 0.98
2411 2496 3.144506 CGAGGCAAGCTCATGGAATAAT 58.855 45.455 0.00 0.00 0.00 1.28
2412 2497 2.170397 TCGAGGCAAGCTCATGGAATAA 59.830 45.455 0.00 0.00 0.00 1.40
2413 2498 1.762370 TCGAGGCAAGCTCATGGAATA 59.238 47.619 0.00 0.00 0.00 1.75
2414 2499 0.543277 TCGAGGCAAGCTCATGGAAT 59.457 50.000 0.00 0.00 0.00 3.01
2418 2503 0.809241 GACCTCGAGGCAAGCTCATG 60.809 60.000 31.56 3.82 39.32 3.07
2602 2714 3.123050 CCTAGCAAAAATAAATGCCGCC 58.877 45.455 0.00 0.00 43.57 6.13
2603 2715 3.551485 CACCTAGCAAAAATAAATGCCGC 59.449 43.478 0.00 0.00 43.57 6.53
2669 2781 5.396884 GGATAGAAGTGTTTGGATAGCAGGT 60.397 44.000 0.00 0.00 0.00 4.00
2768 2895 5.705441 TGATGTTGTCTCTAATGGTTTCACC 59.295 40.000 0.00 0.00 39.22 4.02
2875 3002 9.609346 ACGTTTGCAGGTTATATAGAATACTTT 57.391 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.