Multiple sequence alignment - TraesCS1D01G008900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G008900 chr1D 100.000 3877 0 0 1 3877 4634334 4638210 0.000000e+00 7160.0
1 TraesCS1D01G008900 chr1D 92.605 1190 78 4 870 2055 3473668 3472485 0.000000e+00 1701.0
2 TraesCS1D01G008900 chr1D 98.473 524 7 1 2 525 10341992 10342514 0.000000e+00 922.0
3 TraesCS1D01G008900 chr1D 95.000 540 24 1 2482 3021 3471859 3471323 0.000000e+00 845.0
4 TraesCS1D01G008900 chr1D 93.750 272 17 0 2046 2317 491899364 491899093 3.610000e-110 409.0
5 TraesCS1D01G008900 chr1D 96.988 166 4 1 2316 2481 3472481 3472317 1.060000e-70 278.0
6 TraesCS1D01G008900 chr1D 100.000 31 0 0 2330 2360 3472339 3472309 1.500000e-04 58.4
7 TraesCS1D01G008900 chr6D 92.674 860 58 2 3019 3877 351964585 351965440 0.000000e+00 1234.0
8 TraesCS1D01G008900 chr6D 93.950 281 16 1 2043 2322 151317485 151317205 1.290000e-114 424.0
9 TraesCS1D01G008900 chr4A 90.338 859 72 9 3024 3877 737378527 737379379 0.000000e+00 1116.0
10 TraesCS1D01G008900 chr4A 88.208 848 88 6 3019 3858 684031762 684032605 0.000000e+00 1002.0
11 TraesCS1D01G008900 chr4A 88.208 848 88 6 3019 3858 684058218 684059061 0.000000e+00 1002.0
12 TraesCS1D01G008900 chr1B 89.872 859 77 8 3024 3877 461897106 461896253 0.000000e+00 1096.0
13 TraesCS1D01G008900 chr1B 90.118 425 36 3 97 519 658471163 658470743 7.320000e-152 547.0
14 TraesCS1D01G008900 chr1B 85.333 450 58 5 2479 2925 6747940 6748384 3.530000e-125 459.0
15 TraesCS1D01G008900 chr7D 91.881 776 59 1 3102 3877 526801988 526801217 0.000000e+00 1081.0
16 TraesCS1D01G008900 chr7D 95.420 262 12 0 2053 2314 209183928 209183667 5.990000e-113 418.0
17 TraesCS1D01G008900 chr1A 88.915 848 77 8 3025 3858 15357287 15356443 0.000000e+00 1029.0
18 TraesCS1D01G008900 chr5A 88.325 848 85 7 3019 3858 105425010 105425851 0.000000e+00 1005.0
19 TraesCS1D01G008900 chr5A 90.255 431 29 6 97 518 660248442 660248868 5.660000e-153 551.0
20 TraesCS1D01G008900 chr5A 94.096 271 15 1 2048 2318 614360148 614360417 1.000000e-110 411.0
21 TraesCS1D01G008900 chr3A 88.090 848 87 8 3019 3858 199135240 199134399 0.000000e+00 994.0
22 TraesCS1D01G008900 chrUn 91.201 716 58 2 658 1369 76613756 76614470 0.000000e+00 968.0
23 TraesCS1D01G008900 chrUn 93.293 656 37 1 1400 2055 76614590 76615238 0.000000e+00 961.0
24 TraesCS1D01G008900 chrUn 94.955 337 16 1 2683 3019 76615846 76616181 9.540000e-146 527.0
25 TraesCS1D01G008900 chrUn 95.082 183 6 1 519 698 76613584 76613766 6.340000e-73 285.0
26 TraesCS1D01G008900 chrUn 95.322 171 8 0 2311 2481 76615235 76615405 4.940000e-69 272.0
27 TraesCS1D01G008900 chr3D 98.462 520 7 1 1 520 98563046 98563564 0.000000e+00 915.0
28 TraesCS1D01G008900 chr6A 90.588 425 34 3 97 519 506484541 506484121 3.380000e-155 558.0
29 TraesCS1D01G008900 chr5B 90.238 420 35 3 97 514 490772276 490772691 9.470000e-151 544.0
30 TraesCS1D01G008900 chr5B 87.293 362 23 6 157 518 539326299 539326637 3.630000e-105 392.0
31 TraesCS1D01G008900 chr5B 94.845 97 5 0 1 97 539326088 539326184 6.710000e-33 152.0
32 TraesCS1D01G008900 chr7A 87.615 436 35 10 97 518 515742648 515742218 4.500000e-134 488.0
33 TraesCS1D01G008900 chr3B 95.556 270 12 0 2051 2320 168523814 168523545 2.140000e-117 433.0
34 TraesCS1D01G008900 chr2D 93.594 281 16 2 2043 2322 481281923 481282202 5.990000e-113 418.0
35 TraesCS1D01G008900 chr2D 93.455 275 16 2 2042 2314 6206061 6206335 1.300000e-109 407.0
36 TraesCS1D01G008900 chr6B 95.038 262 13 0 2054 2315 583189233 583188972 2.790000e-111 412.0
37 TraesCS1D01G008900 chr7B 94.717 265 13 1 2050 2314 464539689 464539952 1.000000e-110 411.0
38 TraesCS1D01G008900 chr2A 85.981 214 24 3 300 513 413330221 413330014 1.400000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G008900 chr1D 4634334 4638210 3876 False 7160.0 7160 100.00000 1 3877 1 chr1D.!!$F1 3876
1 TraesCS1D01G008900 chr1D 10341992 10342514 522 False 922.0 922 98.47300 2 525 1 chr1D.!!$F2 523
2 TraesCS1D01G008900 chr1D 3471323 3473668 2345 True 720.6 1701 96.14825 870 3021 4 chr1D.!!$R2 2151
3 TraesCS1D01G008900 chr6D 351964585 351965440 855 False 1234.0 1234 92.67400 3019 3877 1 chr6D.!!$F1 858
4 TraesCS1D01G008900 chr4A 737378527 737379379 852 False 1116.0 1116 90.33800 3024 3877 1 chr4A.!!$F3 853
5 TraesCS1D01G008900 chr4A 684031762 684032605 843 False 1002.0 1002 88.20800 3019 3858 1 chr4A.!!$F1 839
6 TraesCS1D01G008900 chr4A 684058218 684059061 843 False 1002.0 1002 88.20800 3019 3858 1 chr4A.!!$F2 839
7 TraesCS1D01G008900 chr1B 461896253 461897106 853 True 1096.0 1096 89.87200 3024 3877 1 chr1B.!!$R1 853
8 TraesCS1D01G008900 chr7D 526801217 526801988 771 True 1081.0 1081 91.88100 3102 3877 1 chr7D.!!$R2 775
9 TraesCS1D01G008900 chr1A 15356443 15357287 844 True 1029.0 1029 88.91500 3025 3858 1 chr1A.!!$R1 833
10 TraesCS1D01G008900 chr5A 105425010 105425851 841 False 1005.0 1005 88.32500 3019 3858 1 chr5A.!!$F1 839
11 TraesCS1D01G008900 chr3A 199134399 199135240 841 True 994.0 994 88.09000 3019 3858 1 chr3A.!!$R1 839
12 TraesCS1D01G008900 chrUn 76613584 76616181 2597 False 602.6 968 93.97060 519 3019 5 chrUn.!!$F1 2500
13 TraesCS1D01G008900 chr3D 98563046 98563564 518 False 915.0 915 98.46200 1 520 1 chr3D.!!$F1 519
14 TraesCS1D01G008900 chr5B 539326088 539326637 549 False 272.0 392 91.06900 1 518 2 chr5B.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 934 0.246360 TGATCAGTGTGCACCGGTAG 59.754 55.0 15.69 2.73 0.00 3.18 F
1656 1870 0.107508 CCGATGTGCTCATCCTTGGT 60.108 55.0 20.10 0.00 45.32 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1879 0.320421 CAATGGACGGACCGACAAGT 60.320 55.0 23.38 3.9 42.61 3.16 R
3010 3682 0.449388 CATCAGCGGGCAAGAAAGAC 59.551 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 276 4.329545 GGCACGGCTGGAGGTTCA 62.330 66.667 0.00 0.00 0.00 3.18
533 608 3.402628 AGCTCTATGTTTGAACACGGT 57.597 42.857 0.00 0.00 42.51 4.83
540 615 1.065345 TGTTTGAACACGGTTCCCTCA 60.065 47.619 12.35 7.23 33.17 3.86
552 627 2.050144 GTTCCCTCAGGGCATCATCTA 58.950 52.381 4.08 0.00 43.94 1.98
712 820 4.847633 ACGAGCGTATACGTAATTAAGCA 58.152 39.130 25.04 0.00 40.92 3.91
718 826 5.914635 GCGTATACGTAATTAAGCACCTGTA 59.085 40.000 25.04 0.00 42.22 2.74
740 848 9.490379 CTGTACTTGTAAGGTGTTTCTAGAAAT 57.510 33.333 20.41 7.28 32.36 2.17
780 888 3.003275 TCAGAAACGTGATTTTGCTGGAC 59.997 43.478 0.00 0.00 0.00 4.02
790 898 6.456315 CGTGATTTTGCTGGACATATTACGAA 60.456 38.462 0.00 0.00 36.04 3.85
816 924 2.825223 TGGATGACTCCTGATCAGTGT 58.175 47.619 21.11 18.07 42.59 3.55
818 926 2.548875 GATGACTCCTGATCAGTGTGC 58.451 52.381 21.11 12.75 0.00 4.57
826 934 0.246360 TGATCAGTGTGCACCGGTAG 59.754 55.000 15.69 2.73 0.00 3.18
828 936 1.826340 ATCAGTGTGCACCGGTAGCA 61.826 55.000 22.47 22.47 40.19 3.49
836 944 0.596082 GCACCGGTAGCACACATTTT 59.404 50.000 19.85 0.00 0.00 1.82
838 946 1.876799 CACCGGTAGCACACATTTTGA 59.123 47.619 6.87 0.00 0.00 2.69
877 985 7.839680 GGACATCAACATCCCCTATAAAATT 57.160 36.000 0.00 0.00 0.00 1.82
887 995 8.440771 ACATCCCCTATAAAATTAGTGGAGAAG 58.559 37.037 0.00 0.00 30.60 2.85
889 997 6.388689 TCCCCTATAAAATTAGTGGAGAAGCA 59.611 38.462 0.00 0.00 0.00 3.91
938 1050 2.800629 GCTAATAAGCGCGAAGGGTACA 60.801 50.000 12.10 0.00 44.71 2.90
950 1062 3.257624 CGAAGGGTACACAGGAAGTTAGT 59.742 47.826 0.00 0.00 0.00 2.24
954 1066 4.040095 AGGGTACACAGGAAGTTAGTGAAC 59.960 45.833 0.00 0.00 37.05 3.18
955 1067 4.313282 GGTACACAGGAAGTTAGTGAACC 58.687 47.826 8.94 0.00 36.08 3.62
969 1081 4.073293 AGTGAACCGTGAAAGAAGTGAT 57.927 40.909 0.00 0.00 0.00 3.06
983 1095 8.420222 TGAAAGAAGTGATTTGAAGCCAAAATA 58.580 29.630 0.00 0.00 44.49 1.40
990 1102 4.398549 TTTGAAGCCAAAATACGTCTCG 57.601 40.909 0.00 0.00 39.15 4.04
1021 1133 0.108756 GCTTCCTTACTCGACGGCTT 60.109 55.000 0.00 0.00 0.00 4.35
1110 1222 0.960286 GGATGCCGGACTACTACCTC 59.040 60.000 5.05 0.00 0.00 3.85
1138 1250 1.383109 ATCGTCCCCATGCTCCTCA 60.383 57.895 0.00 0.00 0.00 3.86
1154 1266 1.135373 CCTCATCGTCTACACGCTGTT 60.135 52.381 0.00 0.00 46.28 3.16
1203 1315 1.595109 CGCGCCATCCATTGCTCTA 60.595 57.895 0.00 0.00 0.00 2.43
1284 1396 1.246056 ACACCATGCGCATCTTGCTT 61.246 50.000 22.51 2.52 42.25 3.91
1335 1448 1.488705 ATCCTGCCGTCAAGGTCCAA 61.489 55.000 0.00 0.00 43.70 3.53
1340 1453 2.355756 CTGCCGTCAAGGTCCAAATATG 59.644 50.000 0.00 0.00 43.70 1.78
1350 1463 6.947733 TCAAGGTCCAAATATGAAGACACATT 59.052 34.615 0.00 0.00 0.00 2.71
1369 1482 8.340618 ACACATTCAAAGACTACATATGCTTT 57.659 30.769 1.58 1.54 0.00 3.51
1425 1639 2.241160 TGATCCATTTGCTGTGTGCTT 58.759 42.857 0.00 0.00 43.37 3.91
1485 1699 1.239296 CGTCCGTGGGTGAGACAGTA 61.239 60.000 0.00 0.00 0.00 2.74
1515 1729 1.873591 GTGGTGTACTTGCTTGTGGAG 59.126 52.381 0.00 0.00 0.00 3.86
1546 1760 1.475403 CTACTGGATCCACCGTCTGT 58.525 55.000 11.44 8.87 42.61 3.41
1608 1822 0.462375 ATGAGTACACGGCGCCAATA 59.538 50.000 28.98 12.40 0.00 1.90
1611 1825 1.520787 GTACACGGCGCCAATAGCT 60.521 57.895 28.98 4.18 40.39 3.32
1623 1837 4.530857 ATAGCTTTCGCCGCGCCT 62.531 61.111 8.21 4.26 36.60 5.52
1656 1870 0.107508 CCGATGTGCTCATCCTTGGT 60.108 55.000 20.10 0.00 45.32 3.67
1659 1873 1.028330 ATGTGCTCATCCTTGGTGCG 61.028 55.000 0.00 0.00 0.00 5.34
1665 1879 3.329889 ATCCTTGGTGCGCCCTCA 61.330 61.111 15.15 0.00 0.00 3.86
1674 1888 4.681978 GCGCCCTCACTTGTCGGT 62.682 66.667 0.00 0.00 0.00 4.69
1795 2009 3.128938 TCAGCTCTTAGTCTTACCTTCGC 59.871 47.826 0.00 0.00 0.00 4.70
1834 2048 5.462068 CGATGCAACAATCTTCTTACGGATA 59.538 40.000 0.00 0.00 0.00 2.59
1860 2074 5.749109 AGAATCACCTCGTAAACATCGATTC 59.251 40.000 0.00 0.00 38.38 2.52
1872 2086 4.527509 ACATCGATTCTGTCTGAACTGT 57.472 40.909 0.00 0.00 37.52 3.55
1919 2133 3.068590 TCCGACAAACTATATCCCGTTCC 59.931 47.826 0.00 0.00 0.00 3.62
2042 2256 6.281405 ACGGATAAAGTAGGTGTCATGAATC 58.719 40.000 0.00 0.00 0.00 2.52
2059 2273 9.699703 GTCATGAATCTCTTAATTAGTACTCCC 57.300 37.037 0.00 0.00 0.00 4.30
2060 2274 9.661954 TCATGAATCTCTTAATTAGTACTCCCT 57.338 33.333 0.00 0.00 0.00 4.20
2061 2275 9.921637 CATGAATCTCTTAATTAGTACTCCCTC 57.078 37.037 0.00 0.00 0.00 4.30
2062 2276 8.480133 TGAATCTCTTAATTAGTACTCCCTCC 57.520 38.462 0.00 0.00 0.00 4.30
2063 2277 8.065627 TGAATCTCTTAATTAGTACTCCCTCCA 58.934 37.037 0.00 0.00 0.00 3.86
2064 2278 9.095700 GAATCTCTTAATTAGTACTCCCTCCAT 57.904 37.037 0.00 0.00 0.00 3.41
2065 2279 9.453830 AATCTCTTAATTAGTACTCCCTCCATT 57.546 33.333 0.00 0.00 0.00 3.16
2066 2280 8.855804 TCTCTTAATTAGTACTCCCTCCATTT 57.144 34.615 0.00 0.00 0.00 2.32
2067 2281 8.925338 TCTCTTAATTAGTACTCCCTCCATTTC 58.075 37.037 0.00 0.00 0.00 2.17
2068 2282 8.618240 TCTTAATTAGTACTCCCTCCATTTCA 57.382 34.615 0.00 0.00 0.00 2.69
2069 2283 8.483758 TCTTAATTAGTACTCCCTCCATTTCAC 58.516 37.037 0.00 0.00 0.00 3.18
2070 2284 6.636454 AATTAGTACTCCCTCCATTTCACA 57.364 37.500 0.00 0.00 0.00 3.58
2071 2285 6.636454 ATTAGTACTCCCTCCATTTCACAA 57.364 37.500 0.00 0.00 0.00 3.33
2072 2286 6.636454 TTAGTACTCCCTCCATTTCACAAT 57.364 37.500 0.00 0.00 0.00 2.71
2073 2287 4.848357 AGTACTCCCTCCATTTCACAATG 58.152 43.478 0.00 0.00 39.79 2.82
2074 2288 3.814504 ACTCCCTCCATTTCACAATGT 57.185 42.857 0.00 0.00 38.58 2.71
2075 2289 3.424703 ACTCCCTCCATTTCACAATGTG 58.575 45.455 7.12 7.12 38.58 3.21
2076 2290 2.756760 CTCCCTCCATTTCACAATGTGG 59.243 50.000 13.95 0.00 38.58 4.17
2077 2291 2.109834 TCCCTCCATTTCACAATGTGGT 59.890 45.455 13.95 0.00 38.58 4.16
2078 2292 2.231964 CCCTCCATTTCACAATGTGGTG 59.768 50.000 13.95 9.89 38.58 4.17
2079 2293 2.353011 CCTCCATTTCACAATGTGGTGC 60.353 50.000 13.95 0.00 38.58 5.01
2080 2294 1.617850 TCCATTTCACAATGTGGTGCC 59.382 47.619 13.95 0.00 38.58 5.01
2081 2295 1.619827 CCATTTCACAATGTGGTGCCT 59.380 47.619 13.95 0.00 38.58 4.75
2082 2296 2.824936 CCATTTCACAATGTGGTGCCTA 59.175 45.455 13.95 0.00 38.58 3.93
2083 2297 3.448301 CCATTTCACAATGTGGTGCCTAT 59.552 43.478 13.95 0.00 38.58 2.57
2084 2298 4.644234 CCATTTCACAATGTGGTGCCTATA 59.356 41.667 13.95 0.00 38.58 1.31
2085 2299 5.221106 CCATTTCACAATGTGGTGCCTATAG 60.221 44.000 13.95 0.00 38.58 1.31
2086 2300 4.835284 TTCACAATGTGGTGCCTATAGA 57.165 40.909 13.95 0.00 38.66 1.98
2087 2301 5.372343 TTCACAATGTGGTGCCTATAGAT 57.628 39.130 13.95 0.00 38.66 1.98
2088 2302 5.372343 TCACAATGTGGTGCCTATAGATT 57.628 39.130 13.95 0.00 38.66 2.40
2089 2303 5.754782 TCACAATGTGGTGCCTATAGATTT 58.245 37.500 13.95 0.00 38.66 2.17
2090 2304 6.186957 TCACAATGTGGTGCCTATAGATTTT 58.813 36.000 13.95 0.00 38.66 1.82
2091 2305 6.663093 TCACAATGTGGTGCCTATAGATTTTT 59.337 34.615 13.95 0.00 38.66 1.94
2092 2306 6.753279 CACAATGTGGTGCCTATAGATTTTTG 59.247 38.462 5.29 0.00 31.10 2.44
2093 2307 6.437162 ACAATGTGGTGCCTATAGATTTTTGT 59.563 34.615 0.00 0.00 0.00 2.83
2094 2308 5.895636 TGTGGTGCCTATAGATTTTTGTG 57.104 39.130 0.00 0.00 0.00 3.33
2095 2309 4.704540 TGTGGTGCCTATAGATTTTTGTGG 59.295 41.667 0.00 0.00 0.00 4.17
2096 2310 4.947388 GTGGTGCCTATAGATTTTTGTGGA 59.053 41.667 0.00 0.00 0.00 4.02
2097 2311 5.417580 GTGGTGCCTATAGATTTTTGTGGAA 59.582 40.000 0.00 0.00 0.00 3.53
2098 2312 5.652014 TGGTGCCTATAGATTTTTGTGGAAG 59.348 40.000 0.00 0.00 0.00 3.46
2099 2313 5.652452 GGTGCCTATAGATTTTTGTGGAAGT 59.348 40.000 0.00 0.00 0.00 3.01
2100 2314 6.183360 GGTGCCTATAGATTTTTGTGGAAGTC 60.183 42.308 0.00 0.00 0.00 3.01
2101 2315 6.374333 GTGCCTATAGATTTTTGTGGAAGTCA 59.626 38.462 0.00 0.00 0.00 3.41
2102 2316 6.945435 TGCCTATAGATTTTTGTGGAAGTCAA 59.055 34.615 0.00 0.00 0.00 3.18
2103 2317 7.450014 TGCCTATAGATTTTTGTGGAAGTCAAA 59.550 33.333 0.00 0.00 33.76 2.69
2104 2318 7.755373 GCCTATAGATTTTTGTGGAAGTCAAAC 59.245 37.037 0.00 0.00 35.05 2.93
2105 2319 9.014297 CCTATAGATTTTTGTGGAAGTCAAACT 57.986 33.333 0.00 0.00 35.05 2.66
2108 2322 7.832503 AGATTTTTGTGGAAGTCAAACTTTG 57.167 32.000 0.00 0.00 38.80 2.77
2109 2323 5.854431 TTTTTGTGGAAGTCAAACTTTGC 57.146 34.783 0.00 0.00 38.80 3.68
2110 2324 3.518634 TTGTGGAAGTCAAACTTTGCC 57.481 42.857 0.00 0.00 38.80 4.52
2111 2325 2.451490 TGTGGAAGTCAAACTTTGCCA 58.549 42.857 0.00 0.00 38.80 4.92
2112 2326 2.828520 TGTGGAAGTCAAACTTTGCCAA 59.171 40.909 2.79 0.00 38.80 4.52
2113 2327 3.186909 GTGGAAGTCAAACTTTGCCAAC 58.813 45.455 2.79 0.00 38.80 3.77
2114 2328 3.096092 TGGAAGTCAAACTTTGCCAACT 58.904 40.909 0.00 0.00 38.80 3.16
2115 2329 3.513515 TGGAAGTCAAACTTTGCCAACTT 59.486 39.130 6.74 6.74 38.80 2.66
2116 2330 4.020662 TGGAAGTCAAACTTTGCCAACTTT 60.021 37.500 7.95 0.00 38.80 2.66
2117 2331 4.329801 GGAAGTCAAACTTTGCCAACTTTG 59.670 41.667 7.95 1.84 38.80 2.77
2118 2332 4.799564 AGTCAAACTTTGCCAACTTTGA 57.200 36.364 5.68 5.68 31.68 2.69
2119 2333 4.494484 AGTCAAACTTTGCCAACTTTGAC 58.506 39.130 21.64 21.64 46.84 3.18
2120 2334 3.616821 GTCAAACTTTGCCAACTTTGACC 59.383 43.478 19.93 9.30 43.35 4.02
2121 2335 3.259374 TCAAACTTTGCCAACTTTGACCA 59.741 39.130 5.68 0.00 29.66 4.02
2122 2336 3.971245 AACTTTGCCAACTTTGACCAA 57.029 38.095 0.00 0.00 0.00 3.67
2123 2337 3.525268 ACTTTGCCAACTTTGACCAAG 57.475 42.857 0.00 0.00 38.64 3.61
2125 2339 2.957491 TTGCCAACTTTGACCAAGTG 57.043 45.000 0.00 0.00 45.77 3.16
2126 2340 1.846007 TGCCAACTTTGACCAAGTGT 58.154 45.000 0.00 0.00 45.77 3.55
2127 2341 3.006112 TGCCAACTTTGACCAAGTGTA 57.994 42.857 0.00 0.00 45.77 2.90
2128 2342 3.561143 TGCCAACTTTGACCAAGTGTAT 58.439 40.909 0.00 0.00 45.77 2.29
2129 2343 4.720046 TGCCAACTTTGACCAAGTGTATA 58.280 39.130 0.00 0.00 45.77 1.47
2130 2344 5.321102 TGCCAACTTTGACCAAGTGTATAT 58.679 37.500 0.00 0.00 45.77 0.86
2131 2345 6.477253 TGCCAACTTTGACCAAGTGTATATA 58.523 36.000 0.00 0.00 45.77 0.86
2132 2346 6.597672 TGCCAACTTTGACCAAGTGTATATAG 59.402 38.462 0.00 0.00 45.77 1.31
2133 2347 6.821665 GCCAACTTTGACCAAGTGTATATAGA 59.178 38.462 0.00 0.00 45.77 1.98
2134 2348 7.335924 GCCAACTTTGACCAAGTGTATATAGAA 59.664 37.037 0.00 0.00 45.77 2.10
2135 2349 9.226606 CCAACTTTGACCAAGTGTATATAGAAA 57.773 33.333 0.00 0.00 45.77 2.52
2140 2354 9.787435 TTTGACCAAGTGTATATAGAAAACTGT 57.213 29.630 0.00 0.00 0.00 3.55
2141 2355 8.997621 TGACCAAGTGTATATAGAAAACTGTC 57.002 34.615 0.00 0.00 0.00 3.51
2142 2356 8.812972 TGACCAAGTGTATATAGAAAACTGTCT 58.187 33.333 0.00 0.00 0.00 3.41
2157 2371 8.812972 AGAAAACTGTCTACATCTACAATACCA 58.187 33.333 0.00 0.00 0.00 3.25
2158 2372 9.431887 GAAAACTGTCTACATCTACAATACCAA 57.568 33.333 0.00 0.00 0.00 3.67
2159 2373 9.787435 AAAACTGTCTACATCTACAATACCAAA 57.213 29.630 0.00 0.00 0.00 3.28
2160 2374 8.773404 AACTGTCTACATCTACAATACCAAAC 57.227 34.615 0.00 0.00 0.00 2.93
2161 2375 7.903145 ACTGTCTACATCTACAATACCAAACA 58.097 34.615 0.00 0.00 0.00 2.83
2162 2376 8.540388 ACTGTCTACATCTACAATACCAAACAT 58.460 33.333 0.00 0.00 0.00 2.71
2163 2377 8.716646 TGTCTACATCTACAATACCAAACATG 57.283 34.615 0.00 0.00 0.00 3.21
2164 2378 8.318412 TGTCTACATCTACAATACCAAACATGT 58.682 33.333 0.00 0.00 0.00 3.21
2165 2379 9.811995 GTCTACATCTACAATACCAAACATGTA 57.188 33.333 0.00 0.00 0.00 2.29
2166 2380 9.811995 TCTACATCTACAATACCAAACATGTAC 57.188 33.333 0.00 0.00 0.00 2.90
2167 2381 9.594478 CTACATCTACAATACCAAACATGTACA 57.406 33.333 0.00 0.00 0.00 2.90
2169 2383 9.461312 ACATCTACAATACCAAACATGTACATT 57.539 29.630 5.37 0.00 0.00 2.71
2170 2384 9.935682 CATCTACAATACCAAACATGTACATTC 57.064 33.333 5.37 0.00 0.00 2.67
2171 2385 9.905713 ATCTACAATACCAAACATGTACATTCT 57.094 29.630 5.37 0.00 0.00 2.40
2172 2386 9.161629 TCTACAATACCAAACATGTACATTCTG 57.838 33.333 5.37 0.00 0.00 3.02
2173 2387 7.994425 ACAATACCAAACATGTACATTCTGA 57.006 32.000 5.37 0.00 0.00 3.27
2174 2388 8.402798 ACAATACCAAACATGTACATTCTGAA 57.597 30.769 5.37 0.00 0.00 3.02
2175 2389 8.855110 ACAATACCAAACATGTACATTCTGAAA 58.145 29.630 5.37 0.00 0.00 2.69
2176 2390 9.128107 CAATACCAAACATGTACATTCTGAAAC 57.872 33.333 5.37 0.00 0.00 2.78
2177 2391 6.959639 ACCAAACATGTACATTCTGAAACT 57.040 33.333 5.37 0.00 0.00 2.66
2178 2392 9.733556 ATACCAAACATGTACATTCTGAAACTA 57.266 29.630 5.37 0.00 0.00 2.24
2179 2393 8.635765 ACCAAACATGTACATTCTGAAACTAT 57.364 30.769 5.37 0.00 0.00 2.12
2180 2394 9.733556 ACCAAACATGTACATTCTGAAACTATA 57.266 29.630 5.37 0.00 0.00 1.31
2187 2401 8.683550 TGTACATTCTGAAACTATAACTCACG 57.316 34.615 0.00 0.00 0.00 4.35
2188 2402 8.517056 TGTACATTCTGAAACTATAACTCACGA 58.483 33.333 0.00 0.00 0.00 4.35
2189 2403 7.813852 ACATTCTGAAACTATAACTCACGAC 57.186 36.000 0.00 0.00 0.00 4.34
2190 2404 6.527023 ACATTCTGAAACTATAACTCACGACG 59.473 38.462 0.00 0.00 0.00 5.12
2191 2405 5.618056 TCTGAAACTATAACTCACGACGT 57.382 39.130 0.00 0.00 0.00 4.34
2192 2406 6.726258 TCTGAAACTATAACTCACGACGTA 57.274 37.500 0.00 0.00 0.00 3.57
2193 2407 7.312657 TCTGAAACTATAACTCACGACGTAT 57.687 36.000 0.00 0.00 0.00 3.06
2194 2408 7.404985 TCTGAAACTATAACTCACGACGTATC 58.595 38.462 0.00 0.00 0.00 2.24
2195 2409 6.489675 TGAAACTATAACTCACGACGTATCC 58.510 40.000 0.00 0.00 0.00 2.59
2196 2410 6.093909 TGAAACTATAACTCACGACGTATCCA 59.906 38.462 0.00 0.00 0.00 3.41
2197 2411 6.441093 AACTATAACTCACGACGTATCCAA 57.559 37.500 0.00 0.00 0.00 3.53
2198 2412 6.630444 ACTATAACTCACGACGTATCCAAT 57.370 37.500 0.00 0.00 0.00 3.16
2199 2413 6.436261 ACTATAACTCACGACGTATCCAATG 58.564 40.000 0.00 0.00 0.00 2.82
2200 2414 3.861276 AACTCACGACGTATCCAATGA 57.139 42.857 0.00 0.00 0.00 2.57
2201 2415 4.386867 AACTCACGACGTATCCAATGAT 57.613 40.909 0.00 0.00 34.87 2.45
2202 2416 3.706698 ACTCACGACGTATCCAATGATG 58.293 45.455 0.00 0.00 32.18 3.07
2203 2417 3.130516 ACTCACGACGTATCCAATGATGT 59.869 43.478 0.00 0.00 32.18 3.06
2204 2418 3.443976 TCACGACGTATCCAATGATGTG 58.556 45.455 0.00 0.00 32.18 3.21
2205 2419 2.033747 CACGACGTATCCAATGATGTGC 60.034 50.000 0.00 0.00 32.18 4.57
2206 2420 2.200899 CGACGTATCCAATGATGTGCA 58.799 47.619 0.00 0.00 32.18 4.57
2207 2421 2.802247 CGACGTATCCAATGATGTGCAT 59.198 45.455 0.00 0.00 39.43 3.96
2209 2423 4.260743 CGACGTATCCAATGATGTGCATTT 60.261 41.667 0.00 0.00 44.68 2.32
2210 2424 4.923893 ACGTATCCAATGATGTGCATTTG 58.076 39.130 0.00 0.00 44.68 2.32
2211 2425 4.202040 ACGTATCCAATGATGTGCATTTGG 60.202 41.667 8.57 8.57 44.68 3.28
2212 2426 4.202040 CGTATCCAATGATGTGCATTTGGT 60.202 41.667 12.63 6.06 44.68 3.67
2213 2427 5.008514 CGTATCCAATGATGTGCATTTGGTA 59.991 40.000 12.63 5.40 44.68 3.25
2214 2428 6.294120 CGTATCCAATGATGTGCATTTGGTAT 60.294 38.462 12.63 9.03 44.68 2.73
2215 2429 5.936187 TCCAATGATGTGCATTTGGTATT 57.064 34.783 12.63 0.00 44.68 1.89
2216 2430 5.904941 TCCAATGATGTGCATTTGGTATTC 58.095 37.500 12.63 0.00 44.68 1.75
2217 2431 5.657745 TCCAATGATGTGCATTTGGTATTCT 59.342 36.000 12.63 0.00 44.68 2.40
2218 2432 6.832900 TCCAATGATGTGCATTTGGTATTCTA 59.167 34.615 12.63 0.00 44.68 2.10
2219 2433 7.013559 TCCAATGATGTGCATTTGGTATTCTAG 59.986 37.037 12.63 0.00 44.68 2.43
2220 2434 7.013559 CCAATGATGTGCATTTGGTATTCTAGA 59.986 37.037 0.00 0.00 44.68 2.43
2221 2435 8.573885 CAATGATGTGCATTTGGTATTCTAGAT 58.426 33.333 0.00 0.00 44.68 1.98
2222 2436 7.500720 TGATGTGCATTTGGTATTCTAGATG 57.499 36.000 0.00 0.00 0.00 2.90
2223 2437 7.056006 TGATGTGCATTTGGTATTCTAGATGT 58.944 34.615 0.00 0.00 0.00 3.06
2224 2438 8.210265 TGATGTGCATTTGGTATTCTAGATGTA 58.790 33.333 0.00 0.00 0.00 2.29
2225 2439 7.786178 TGTGCATTTGGTATTCTAGATGTAC 57.214 36.000 0.00 0.27 32.91 2.90
2226 2440 6.765989 TGTGCATTTGGTATTCTAGATGTACC 59.234 38.462 20.29 20.29 38.65 3.34
2227 2441 6.204882 GTGCATTTGGTATTCTAGATGTACCC 59.795 42.308 22.53 12.80 37.63 3.69
2228 2442 6.126623 TGCATTTGGTATTCTAGATGTACCCA 60.127 38.462 22.53 14.41 37.63 4.51
2229 2443 6.942576 GCATTTGGTATTCTAGATGTACCCAT 59.057 38.462 22.53 15.54 37.63 4.00
2230 2444 7.448469 GCATTTGGTATTCTAGATGTACCCATT 59.552 37.037 22.53 11.78 37.63 3.16
2231 2445 9.354673 CATTTGGTATTCTAGATGTACCCATTT 57.645 33.333 22.53 9.68 37.63 2.32
2232 2446 9.936329 ATTTGGTATTCTAGATGTACCCATTTT 57.064 29.630 22.53 8.51 37.63 1.82
2233 2447 9.762381 TTTGGTATTCTAGATGTACCCATTTTT 57.238 29.630 22.53 0.00 37.63 1.94
2234 2448 8.974060 TGGTATTCTAGATGTACCCATTTTTC 57.026 34.615 22.53 5.53 37.63 2.29
2235 2449 8.778059 TGGTATTCTAGATGTACCCATTTTTCT 58.222 33.333 22.53 0.00 37.63 2.52
2236 2450 9.274206 GGTATTCTAGATGTACCCATTTTTCTC 57.726 37.037 17.91 0.00 33.36 2.87
2267 2481 9.829507 AATATGGTCAAAGTTTGAAATGTTTGA 57.170 25.926 19.63 11.90 42.15 2.69
2274 2488 8.014517 TCAAAGTTTGAAATGTTTGACTTTTGC 58.985 29.630 15.92 0.00 35.75 3.68
2275 2489 7.432350 AAGTTTGAAATGTTTGACTTTTGCA 57.568 28.000 0.00 0.00 0.00 4.08
2276 2490 7.432350 AGTTTGAAATGTTTGACTTTTGCAA 57.568 28.000 0.00 0.00 0.00 4.08
2277 2491 7.869800 AGTTTGAAATGTTTGACTTTTGCAAA 58.130 26.923 8.05 8.05 33.22 3.68
2278 2492 8.348507 AGTTTGAAATGTTTGACTTTTGCAAAA 58.651 25.926 22.61 22.61 37.03 2.44
2279 2493 8.962111 GTTTGAAATGTTTGACTTTTGCAAAAA 58.038 25.926 23.92 8.29 37.03 1.94
2280 2494 9.688592 TTTGAAATGTTTGACTTTTGCAAAAAT 57.311 22.222 23.92 15.90 37.03 1.82
2281 2495 8.892887 TGAAATGTTTGACTTTTGCAAAAATC 57.107 26.923 22.90 22.90 37.03 2.17
2282 2496 8.728833 TGAAATGTTTGACTTTTGCAAAAATCT 58.271 25.926 27.69 13.68 37.03 2.40
2287 2501 9.474920 TGTTTGACTTTTGCAAAAATCTATAGG 57.525 29.630 27.69 15.71 37.03 2.57
2288 2502 8.435430 GTTTGACTTTTGCAAAAATCTATAGGC 58.565 33.333 27.69 16.81 37.03 3.93
2289 2503 7.225784 TGACTTTTGCAAAAATCTATAGGCA 57.774 32.000 27.69 18.92 0.00 4.75
2290 2504 7.090173 TGACTTTTGCAAAAATCTATAGGCAC 58.910 34.615 27.69 12.10 0.00 5.01
2291 2505 7.039784 TGACTTTTGCAAAAATCTATAGGCACT 60.040 33.333 27.69 1.15 46.37 4.40
2305 2519 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
2306 2520 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
2307 2521 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
2308 2522 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
2309 2523 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
2310 2524 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
2311 2525 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
2314 2528 3.641906 ACATTATGGAACGGAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
2459 2673 1.540267 AGCTGCTTTGCTCAACATCAG 59.460 47.619 0.00 0.00 39.34 2.90
2473 2687 1.336887 ACATCAGGTTTCGACCTCACG 60.337 52.381 0.00 0.00 38.22 4.35
2502 3174 9.260002 CCTTATGTTTGCTCAAGTTTTGTAAAT 57.740 29.630 0.00 0.00 0.00 1.40
2547 3219 9.654663 ACTTCGTCTTTGCTTTATCTATTAAGT 57.345 29.630 0.00 0.00 0.00 2.24
2548 3220 9.907576 CTTCGTCTTTGCTTTATCTATTAAGTG 57.092 33.333 0.00 0.00 0.00 3.16
2566 3238 4.228912 AGTGAAATGAAAGCCTGTTTCG 57.771 40.909 0.00 0.00 34.23 3.46
2613 3285 4.963628 ACCCTTAGAAGAGGAGGTTGTATC 59.036 45.833 4.41 0.00 39.25 2.24
2636 3308 6.604171 TCATGTTGGAGATAAAGCCATGTAT 58.396 36.000 0.00 0.00 33.46 2.29
2637 3309 7.062322 TCATGTTGGAGATAAAGCCATGTATT 58.938 34.615 0.00 0.00 33.46 1.89
2638 3310 6.942532 TGTTGGAGATAAAGCCATGTATTC 57.057 37.500 0.00 0.00 33.46 1.75
2651 3323 7.484035 AGCCATGTATTCGTCTATTCTTTTC 57.516 36.000 0.00 0.00 0.00 2.29
2996 3668 6.494893 TGTATGCCTTGTGACAAGAATAAC 57.505 37.500 25.75 17.22 0.00 1.89
3010 3682 9.743057 TGACAAGAATAACCAAACTTTGTAATG 57.257 29.630 0.88 0.00 0.00 1.90
3047 3719 1.368579 GCTGCCCAAACTGTGCAAT 59.631 52.632 0.00 0.00 34.06 3.56
3135 3808 4.441087 GTGAATTTCTCGGCAGACAAAAAC 59.559 41.667 0.00 0.00 0.00 2.43
3149 3822 3.530535 ACAAAAACGGCTTTGCAGATTT 58.469 36.364 10.40 0.00 39.46 2.17
3161 3834 7.201609 CGGCTTTGCAGATTTAGTATAGTTGAA 60.202 37.037 0.00 0.00 0.00 2.69
3198 3871 1.777272 ACCTGCTTTCCTCAAGAACCT 59.223 47.619 0.00 0.00 33.80 3.50
3210 3883 3.206150 TCAAGAACCTGTGTCTGAAAGC 58.794 45.455 0.00 0.00 0.00 3.51
3397 4071 6.094603 GGGCACAATATCTATTTATGCTCAGG 59.905 42.308 12.36 0.00 36.44 3.86
3429 4103 2.306255 AAATATCCGGCCACGAGCGT 62.306 55.000 2.24 0.00 45.17 5.07
3479 4160 0.102120 GTGACAGCGAGAGAGGATGG 59.898 60.000 0.00 0.00 0.00 3.51
3577 4263 3.842923 CACGCTCCTCCTGCCGAT 61.843 66.667 0.00 0.00 0.00 4.18
3684 4370 3.058160 GCATCACGCACAAGCCCT 61.058 61.111 0.00 0.00 41.79 5.19
3695 4381 2.060980 CAAGCCCTAGCCTCCTCGT 61.061 63.158 0.00 0.00 41.25 4.18
3696 4382 1.306226 AAGCCCTAGCCTCCTCGTT 60.306 57.895 0.00 0.00 41.25 3.85
3791 4477 2.284995 GGCAGTGACCCTCTCCCT 60.285 66.667 0.00 0.00 0.00 4.20
3795 4481 1.577736 CAGTGACCCTCTCCCTTCAT 58.422 55.000 0.00 0.00 0.00 2.57
3837 4528 4.757692 TCTTTCCTCTCTCTTTCTCCCTT 58.242 43.478 0.00 0.00 0.00 3.95
3856 4547 3.954258 CCTTCTCTCCTTCCTTCTCTCTC 59.046 52.174 0.00 0.00 0.00 3.20
3857 4548 4.325344 CCTTCTCTCCTTCCTTCTCTCTCT 60.325 50.000 0.00 0.00 0.00 3.10
3858 4549 4.503714 TCTCTCCTTCCTTCTCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
3859 4550 3.202151 TCTCTCCTTCCTTCTCTCTCTCC 59.798 52.174 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 276 2.559668 TCGACCTAACCATCGTGTTCTT 59.440 45.455 0.00 0.00 39.38 2.52
540 615 3.387962 TGGAAGAACTAGATGATGCCCT 58.612 45.455 0.00 0.00 0.00 5.19
552 627 0.673644 CGCGTCCCAATGGAAGAACT 60.674 55.000 0.00 0.00 44.07 3.01
590 665 4.330944 TGACGAAGAAACCACACATACT 57.669 40.909 0.00 0.00 0.00 2.12
594 669 2.875933 GGATTGACGAAGAAACCACACA 59.124 45.455 0.00 0.00 0.00 3.72
712 820 5.625568 AGAAACACCTTACAAGTACAGGT 57.374 39.130 0.00 0.00 41.97 4.00
740 848 9.952188 CGTTTCTGATATACTTCATCACTTCTA 57.048 33.333 0.00 0.00 0.00 2.10
746 854 9.599866 AAATCACGTTTCTGATATACTTCATCA 57.400 29.630 0.00 0.00 30.27 3.07
780 888 7.009631 GGAGTCATCCATCGAATTCGTAATATG 59.990 40.741 25.93 20.52 45.87 1.78
816 924 0.536233 AAATGTGTGCTACCGGTGCA 60.536 50.000 19.93 21.51 38.19 4.57
818 926 1.876799 TCAAAATGTGTGCTACCGGTG 59.123 47.619 19.93 8.61 0.00 4.94
826 934 1.080569 CGGGCCTCAAAATGTGTGC 60.081 57.895 0.84 0.00 0.00 4.57
828 936 1.112315 TTGCGGGCCTCAAAATGTGT 61.112 50.000 6.45 0.00 0.00 3.72
836 944 4.020617 CCTGACTTGCGGGCCTCA 62.021 66.667 0.84 0.00 35.91 3.86
887 995 0.031994 GCAGGTAGCTAGCTCTCTGC 59.968 60.000 35.33 35.33 41.31 4.26
889 997 0.260230 TGGCAGGTAGCTAGCTCTCT 59.740 55.000 23.26 16.71 44.79 3.10
938 1050 2.696707 TCACGGTTCACTAACTTCCTGT 59.303 45.455 0.00 0.00 35.81 4.00
950 1062 4.878971 TCAAATCACTTCTTTCACGGTTCA 59.121 37.500 0.00 0.00 0.00 3.18
954 1066 4.222114 GCTTCAAATCACTTCTTTCACGG 58.778 43.478 0.00 0.00 0.00 4.94
955 1067 4.222114 GGCTTCAAATCACTTCTTTCACG 58.778 43.478 0.00 0.00 0.00 4.35
969 1081 3.187637 CCGAGACGTATTTTGGCTTCAAA 59.812 43.478 0.00 0.00 38.47 2.69
990 1102 0.765510 AAGGAAGCATATCGACCCCC 59.234 55.000 0.00 0.00 0.00 5.40
1068 1180 1.372004 CGAGTACCGAAACCACGCA 60.372 57.895 0.00 0.00 41.76 5.24
1110 1222 1.144057 GGGGACGATGTGGCAGTAG 59.856 63.158 0.00 0.00 0.00 2.57
1191 1303 4.039730 AGCTTGTATCGTAGAGCAATGGAT 59.960 41.667 0.00 0.00 43.63 3.41
1197 1309 1.476488 TGCAGCTTGTATCGTAGAGCA 59.524 47.619 0.00 0.00 43.63 4.26
1203 1315 1.450312 GGGCTGCAGCTTGTATCGT 60.450 57.895 35.82 0.00 41.70 3.73
1248 1360 0.613572 TGTCCATGTAGCACCGGAGA 60.614 55.000 9.46 0.00 0.00 3.71
1273 1385 0.806868 ATGGTGACAAGCAAGATGCG 59.193 50.000 0.00 0.00 46.58 4.73
1335 1448 9.725019 TGTAGTCTTTGAATGTGTCTTCATATT 57.275 29.630 0.00 0.00 37.92 1.28
1340 1453 8.119226 GCATATGTAGTCTTTGAATGTGTCTTC 58.881 37.037 4.29 0.00 0.00 2.87
1392 1606 8.715998 CAGCAAATGGATCAATACTACTCATAC 58.284 37.037 0.00 0.00 0.00 2.39
1393 1607 8.432013 ACAGCAAATGGATCAATACTACTCATA 58.568 33.333 0.00 0.00 0.00 2.15
1394 1608 7.228108 CACAGCAAATGGATCAATACTACTCAT 59.772 37.037 0.00 0.00 0.00 2.90
1395 1609 6.539826 CACAGCAAATGGATCAATACTACTCA 59.460 38.462 0.00 0.00 0.00 3.41
1443 1657 3.965660 GGAAGCCCCGTCCTGATA 58.034 61.111 0.00 0.00 31.94 2.15
1476 1690 1.213799 CAGCTGCGCTACTGTCTCA 59.786 57.895 18.44 0.00 36.40 3.27
1485 1699 3.625897 TACACCACCAGCTGCGCT 61.626 61.111 8.66 0.00 40.77 5.92
1515 1729 2.273538 TCCAGTAGCCGAGATAGTCC 57.726 55.000 0.00 0.00 0.00 3.85
1546 1760 0.774276 TATCCCCACTTGGTGTGCAA 59.226 50.000 0.00 0.00 44.92 4.08
1623 1837 1.985662 ATCGGACCAGTGCCCGTAA 60.986 57.895 17.82 4.64 45.48 3.18
1656 1870 4.680237 CCGACAAGTGAGGGCGCA 62.680 66.667 10.83 0.00 0.00 6.09
1659 1873 2.047179 GGACCGACAAGTGAGGGC 60.047 66.667 0.00 0.14 0.00 5.19
1665 1879 0.320421 CAATGGACGGACCGACAAGT 60.320 55.000 23.38 3.90 42.61 3.16
1740 1954 2.818841 CCACTGTGGGTGTCGACA 59.181 61.111 19.23 15.76 43.94 4.35
1795 2009 2.100631 ATCGTCAAAGCCGCTTCCG 61.101 57.895 5.98 9.44 0.00 4.30
1807 2021 4.091365 CGTAAGAAGATTGTTGCATCGTCA 59.909 41.667 4.23 0.00 43.02 4.35
1834 2048 6.387041 TCGATGTTTACGAGGTGATTCTAT 57.613 37.500 0.00 0.00 34.85 1.98
1860 2074 3.325293 ACCTGCATACAGTTCAGACAG 57.675 47.619 0.00 0.00 42.81 3.51
1872 2086 3.706600 ACGGGAACTTAAACCTGCATA 57.293 42.857 0.00 0.00 36.12 3.14
1919 2133 2.804572 CGTGGTATTCTGCTCCTCCATG 60.805 54.545 0.00 0.00 0.00 3.66
2042 2256 8.705594 TGAAATGGAGGGAGTACTAATTAAGAG 58.294 37.037 0.00 0.00 0.00 2.85
2055 2269 2.756760 CCACATTGTGAAATGGAGGGAG 59.243 50.000 18.33 0.00 35.23 4.30
2056 2270 2.109834 ACCACATTGTGAAATGGAGGGA 59.890 45.455 18.33 0.00 35.23 4.20
2057 2271 2.231964 CACCACATTGTGAAATGGAGGG 59.768 50.000 18.33 0.56 38.55 4.30
2058 2272 2.353011 GCACCACATTGTGAAATGGAGG 60.353 50.000 18.33 1.29 38.55 4.30
2059 2273 2.353011 GGCACCACATTGTGAAATGGAG 60.353 50.000 18.33 2.15 38.55 3.86
2060 2274 1.617850 GGCACCACATTGTGAAATGGA 59.382 47.619 18.33 0.00 38.55 3.41
2061 2275 1.619827 AGGCACCACATTGTGAAATGG 59.380 47.619 18.33 3.57 38.55 3.16
2062 2276 4.724074 ATAGGCACCACATTGTGAAATG 57.276 40.909 18.33 13.32 38.55 2.32
2063 2277 5.754782 TCTATAGGCACCACATTGTGAAAT 58.245 37.500 18.33 0.59 38.55 2.17
2064 2278 5.172687 TCTATAGGCACCACATTGTGAAA 57.827 39.130 18.33 0.00 38.55 2.69
2065 2279 4.835284 TCTATAGGCACCACATTGTGAA 57.165 40.909 18.33 0.00 38.55 3.18
2066 2280 5.372343 AATCTATAGGCACCACATTGTGA 57.628 39.130 18.33 0.00 38.55 3.58
2067 2281 6.455360 AAAATCTATAGGCACCACATTGTG 57.545 37.500 9.92 9.92 39.29 3.33
2068 2282 6.437162 ACAAAAATCTATAGGCACCACATTGT 59.563 34.615 0.00 0.00 0.00 2.71
2069 2283 6.753279 CACAAAAATCTATAGGCACCACATTG 59.247 38.462 0.00 0.00 0.00 2.82
2070 2284 6.127366 CCACAAAAATCTATAGGCACCACATT 60.127 38.462 0.00 0.00 0.00 2.71
2071 2285 5.360714 CCACAAAAATCTATAGGCACCACAT 59.639 40.000 0.00 0.00 0.00 3.21
2072 2286 4.704540 CCACAAAAATCTATAGGCACCACA 59.295 41.667 0.00 0.00 0.00 4.17
2073 2287 4.947388 TCCACAAAAATCTATAGGCACCAC 59.053 41.667 0.00 0.00 0.00 4.16
2074 2288 5.186256 TCCACAAAAATCTATAGGCACCA 57.814 39.130 0.00 0.00 0.00 4.17
2075 2289 5.652452 ACTTCCACAAAAATCTATAGGCACC 59.348 40.000 0.00 0.00 0.00 5.01
2076 2290 6.374333 TGACTTCCACAAAAATCTATAGGCAC 59.626 38.462 0.00 0.00 0.00 5.01
2077 2291 6.480763 TGACTTCCACAAAAATCTATAGGCA 58.519 36.000 0.00 0.00 0.00 4.75
2078 2292 7.391148 TTGACTTCCACAAAAATCTATAGGC 57.609 36.000 0.00 0.00 0.00 3.93
2079 2293 9.014297 AGTTTGACTTCCACAAAAATCTATAGG 57.986 33.333 0.00 0.00 38.63 2.57
2082 2296 9.533253 CAAAGTTTGACTTCCACAAAAATCTAT 57.467 29.630 10.19 0.00 37.47 1.98
2083 2297 7.491048 GCAAAGTTTGACTTCCACAAAAATCTA 59.509 33.333 19.82 0.00 37.47 1.98
2084 2298 6.313658 GCAAAGTTTGACTTCCACAAAAATCT 59.686 34.615 19.82 0.00 37.47 2.40
2085 2299 6.456853 GGCAAAGTTTGACTTCCACAAAAATC 60.457 38.462 19.82 0.00 37.47 2.17
2086 2300 5.353956 GGCAAAGTTTGACTTCCACAAAAAT 59.646 36.000 19.82 0.00 37.47 1.82
2087 2301 4.693095 GGCAAAGTTTGACTTCCACAAAAA 59.307 37.500 19.82 0.00 37.47 1.94
2088 2302 4.249661 GGCAAAGTTTGACTTCCACAAAA 58.750 39.130 19.82 0.00 37.47 2.44
2089 2303 3.259374 TGGCAAAGTTTGACTTCCACAAA 59.741 39.130 21.83 0.00 37.47 2.83
2090 2304 2.828520 TGGCAAAGTTTGACTTCCACAA 59.171 40.909 21.83 0.00 37.47 3.33
2091 2305 2.451490 TGGCAAAGTTTGACTTCCACA 58.549 42.857 21.83 0.00 37.47 4.17
2092 2306 3.119137 AGTTGGCAAAGTTTGACTTCCAC 60.119 43.478 21.83 12.78 37.47 4.02
2093 2307 3.096092 AGTTGGCAAAGTTTGACTTCCA 58.904 40.909 21.83 14.49 37.47 3.53
2094 2308 3.801114 AGTTGGCAAAGTTTGACTTCC 57.199 42.857 21.83 12.17 37.47 3.46
2101 2315 3.971245 TGGTCAAAGTTGGCAAAGTTT 57.029 38.095 0.00 0.42 39.10 2.66
2102 2316 3.860641 CTTGGTCAAAGTTGGCAAAGTT 58.139 40.909 0.00 0.00 38.66 2.66
2103 2317 3.525268 CTTGGTCAAAGTTGGCAAAGT 57.475 42.857 0.00 0.00 38.66 2.66
2114 2328 9.787435 ACAGTTTTCTATATACACTTGGTCAAA 57.213 29.630 0.00 0.00 0.00 2.69
2115 2329 9.431887 GACAGTTTTCTATATACACTTGGTCAA 57.568 33.333 0.00 0.00 0.00 3.18
2116 2330 8.812972 AGACAGTTTTCTATATACACTTGGTCA 58.187 33.333 0.00 0.00 0.00 4.02
2131 2345 8.812972 TGGTATTGTAGATGTAGACAGTTTTCT 58.187 33.333 0.00 0.00 0.00 2.52
2132 2346 8.997621 TGGTATTGTAGATGTAGACAGTTTTC 57.002 34.615 0.00 0.00 0.00 2.29
2133 2347 9.787435 TTTGGTATTGTAGATGTAGACAGTTTT 57.213 29.630 0.00 0.00 0.00 2.43
2134 2348 9.216117 GTTTGGTATTGTAGATGTAGACAGTTT 57.784 33.333 0.00 0.00 0.00 2.66
2135 2349 8.372459 TGTTTGGTATTGTAGATGTAGACAGTT 58.628 33.333 0.00 0.00 0.00 3.16
2136 2350 7.903145 TGTTTGGTATTGTAGATGTAGACAGT 58.097 34.615 0.00 0.00 0.00 3.55
2137 2351 8.820933 CATGTTTGGTATTGTAGATGTAGACAG 58.179 37.037 0.00 0.00 0.00 3.51
2138 2352 8.318412 ACATGTTTGGTATTGTAGATGTAGACA 58.682 33.333 0.00 0.00 0.00 3.41
2139 2353 8.718102 ACATGTTTGGTATTGTAGATGTAGAC 57.282 34.615 0.00 0.00 0.00 2.59
2140 2354 9.811995 GTACATGTTTGGTATTGTAGATGTAGA 57.188 33.333 2.30 0.00 0.00 2.59
2141 2355 9.594478 TGTACATGTTTGGTATTGTAGATGTAG 57.406 33.333 2.30 0.00 0.00 2.74
2143 2357 9.461312 AATGTACATGTTTGGTATTGTAGATGT 57.539 29.630 9.63 0.00 31.34 3.06
2144 2358 9.935682 GAATGTACATGTTTGGTATTGTAGATG 57.064 33.333 9.63 0.00 31.34 2.90
2145 2359 9.905713 AGAATGTACATGTTTGGTATTGTAGAT 57.094 29.630 9.63 0.00 31.99 1.98
2146 2360 9.161629 CAGAATGTACATGTTTGGTATTGTAGA 57.838 33.333 9.63 0.00 0.00 2.59
2147 2361 9.161629 TCAGAATGTACATGTTTGGTATTGTAG 57.838 33.333 9.63 0.00 37.40 2.74
2148 2362 9.508642 TTCAGAATGTACATGTTTGGTATTGTA 57.491 29.630 9.63 0.00 37.40 2.41
2149 2363 7.994425 TCAGAATGTACATGTTTGGTATTGT 57.006 32.000 9.63 0.00 37.40 2.71
2150 2364 9.128107 GTTTCAGAATGTACATGTTTGGTATTG 57.872 33.333 9.63 0.00 37.40 1.90
2151 2365 9.077885 AGTTTCAGAATGTACATGTTTGGTATT 57.922 29.630 9.63 0.00 37.40 1.89
2152 2366 8.635765 AGTTTCAGAATGTACATGTTTGGTAT 57.364 30.769 9.63 0.00 37.40 2.73
2153 2367 9.733556 ATAGTTTCAGAATGTACATGTTTGGTA 57.266 29.630 9.63 0.00 37.40 3.25
2154 2368 6.959639 AGTTTCAGAATGTACATGTTTGGT 57.040 33.333 9.63 0.00 37.40 3.67
2161 2375 9.302345 CGTGAGTTATAGTTTCAGAATGTACAT 57.698 33.333 1.41 1.41 37.40 2.29
2162 2376 8.517056 TCGTGAGTTATAGTTTCAGAATGTACA 58.483 33.333 0.00 0.00 37.40 2.90
2163 2377 8.796278 GTCGTGAGTTATAGTTTCAGAATGTAC 58.204 37.037 0.00 0.00 37.40 2.90
2164 2378 7.695201 CGTCGTGAGTTATAGTTTCAGAATGTA 59.305 37.037 0.00 0.00 37.40 2.29
2165 2379 6.527023 CGTCGTGAGTTATAGTTTCAGAATGT 59.473 38.462 0.00 0.00 37.40 2.71
2166 2380 6.527023 ACGTCGTGAGTTATAGTTTCAGAATG 59.473 38.462 0.00 0.00 37.54 2.67
2167 2381 6.618811 ACGTCGTGAGTTATAGTTTCAGAAT 58.381 36.000 0.00 0.00 0.00 2.40
2168 2382 6.005583 ACGTCGTGAGTTATAGTTTCAGAA 57.994 37.500 0.00 0.00 0.00 3.02
2169 2383 5.618056 ACGTCGTGAGTTATAGTTTCAGA 57.382 39.130 0.00 0.00 0.00 3.27
2170 2384 6.632035 GGATACGTCGTGAGTTATAGTTTCAG 59.368 42.308 8.47 0.00 0.00 3.02
2171 2385 6.093909 TGGATACGTCGTGAGTTATAGTTTCA 59.906 38.462 8.47 0.00 42.51 2.69
2172 2386 6.489675 TGGATACGTCGTGAGTTATAGTTTC 58.510 40.000 8.47 0.00 42.51 2.78
2173 2387 6.441093 TGGATACGTCGTGAGTTATAGTTT 57.559 37.500 8.47 0.00 42.51 2.66
2174 2388 6.441093 TTGGATACGTCGTGAGTTATAGTT 57.559 37.500 8.47 0.00 42.51 2.24
2175 2389 6.261603 TCATTGGATACGTCGTGAGTTATAGT 59.738 38.462 8.47 0.00 42.51 2.12
2176 2390 6.665465 TCATTGGATACGTCGTGAGTTATAG 58.335 40.000 8.47 0.00 42.51 1.31
2177 2391 6.622833 TCATTGGATACGTCGTGAGTTATA 57.377 37.500 8.47 0.00 42.51 0.98
2178 2392 5.509716 TCATTGGATACGTCGTGAGTTAT 57.490 39.130 8.47 0.00 42.51 1.89
2179 2393 4.968812 TCATTGGATACGTCGTGAGTTA 57.031 40.909 8.47 0.00 42.51 2.24
2180 2394 3.861276 TCATTGGATACGTCGTGAGTT 57.139 42.857 8.47 0.00 42.51 3.01
2181 2395 3.130516 ACATCATTGGATACGTCGTGAGT 59.869 43.478 8.47 0.00 42.51 3.41
2182 2396 3.487207 CACATCATTGGATACGTCGTGAG 59.513 47.826 8.47 0.00 42.51 3.51
2183 2397 3.443976 CACATCATTGGATACGTCGTGA 58.556 45.455 8.47 0.00 42.51 4.35
2184 2398 2.033747 GCACATCATTGGATACGTCGTG 60.034 50.000 8.47 0.00 42.51 4.35
2185 2399 2.201732 GCACATCATTGGATACGTCGT 58.798 47.619 2.21 2.21 42.51 4.34
2186 2400 2.200899 TGCACATCATTGGATACGTCG 58.799 47.619 0.00 0.00 42.51 5.12
2187 2401 4.818534 AATGCACATCATTGGATACGTC 57.181 40.909 0.00 0.00 43.40 4.34
2188 2402 4.202040 CCAAATGCACATCATTGGATACGT 60.202 41.667 7.93 0.00 44.23 3.57
2189 2403 4.202040 ACCAAATGCACATCATTGGATACG 60.202 41.667 17.12 0.00 44.23 3.06
2190 2404 5.266733 ACCAAATGCACATCATTGGATAC 57.733 39.130 17.12 0.00 44.23 2.24
2191 2405 7.506599 AGAATACCAAATGCACATCATTGGATA 59.493 33.333 17.12 8.79 44.23 2.59
2192 2406 6.325545 AGAATACCAAATGCACATCATTGGAT 59.674 34.615 17.12 6.97 44.23 3.41
2193 2407 5.657745 AGAATACCAAATGCACATCATTGGA 59.342 36.000 17.12 5.42 44.23 3.53
2194 2408 5.909477 AGAATACCAAATGCACATCATTGG 58.091 37.500 11.02 11.02 44.23 3.16
2195 2409 7.933396 TCTAGAATACCAAATGCACATCATTG 58.067 34.615 0.00 0.00 44.23 2.82
2196 2410 8.573885 CATCTAGAATACCAAATGCACATCATT 58.426 33.333 0.00 0.00 46.82 2.57
2197 2411 7.722728 ACATCTAGAATACCAAATGCACATCAT 59.277 33.333 0.00 0.00 36.87 2.45
2198 2412 7.056006 ACATCTAGAATACCAAATGCACATCA 58.944 34.615 0.00 0.00 0.00 3.07
2199 2413 7.502120 ACATCTAGAATACCAAATGCACATC 57.498 36.000 0.00 0.00 0.00 3.06
2200 2414 7.445402 GGTACATCTAGAATACCAAATGCACAT 59.555 37.037 22.87 0.00 38.61 3.21
2201 2415 6.765989 GGTACATCTAGAATACCAAATGCACA 59.234 38.462 22.87 0.00 38.61 4.57
2202 2416 6.204882 GGGTACATCTAGAATACCAAATGCAC 59.795 42.308 26.35 8.88 40.23 4.57
2203 2417 6.126623 TGGGTACATCTAGAATACCAAATGCA 60.127 38.462 26.35 17.01 40.23 3.96
2204 2418 6.296026 TGGGTACATCTAGAATACCAAATGC 58.704 40.000 26.35 15.37 40.23 3.56
2205 2419 8.924511 AATGGGTACATCTAGAATACCAAATG 57.075 34.615 26.35 10.36 40.23 2.32
2206 2420 9.936329 AAAATGGGTACATCTAGAATACCAAAT 57.064 29.630 26.35 19.54 40.23 2.32
2207 2421 9.762381 AAAAATGGGTACATCTAGAATACCAAA 57.238 29.630 26.35 18.61 40.23 3.28
2208 2422 9.403583 GAAAAATGGGTACATCTAGAATACCAA 57.596 33.333 26.35 20.51 40.23 3.67
2209 2423 8.778059 AGAAAAATGGGTACATCTAGAATACCA 58.222 33.333 26.35 17.74 40.23 3.25
2210 2424 9.274206 GAGAAAAATGGGTACATCTAGAATACC 57.726 37.037 20.93 20.93 35.94 2.73
2241 2455 9.829507 TCAAACATTTCAAACTTTGACCATATT 57.170 25.926 3.56 0.00 39.87 1.28
2242 2456 9.260002 GTCAAACATTTCAAACTTTGACCATAT 57.740 29.630 17.45 0.00 43.35 1.78
2243 2457 8.641499 GTCAAACATTTCAAACTTTGACCATA 57.359 30.769 17.45 0.00 43.35 2.74
2244 2458 7.538303 GTCAAACATTTCAAACTTTGACCAT 57.462 32.000 17.45 0.00 43.35 3.55
2245 2459 6.959671 GTCAAACATTTCAAACTTTGACCA 57.040 33.333 17.45 0.00 43.35 4.02
2247 2461 9.316859 CAAAAGTCAAACATTTCAAACTTTGAC 57.683 29.630 19.24 19.24 46.84 3.18
2248 2462 8.014517 GCAAAAGTCAAACATTTCAAACTTTGA 58.985 29.630 0.00 0.00 37.12 2.69
2249 2463 7.802251 TGCAAAAGTCAAACATTTCAAACTTTG 59.198 29.630 0.00 0.00 37.12 2.77
2250 2464 7.869800 TGCAAAAGTCAAACATTTCAAACTTT 58.130 26.923 0.00 0.00 38.27 2.66
2251 2465 7.432350 TGCAAAAGTCAAACATTTCAAACTT 57.568 28.000 0.00 0.00 0.00 2.66
2252 2466 7.432350 TTGCAAAAGTCAAACATTTCAAACT 57.568 28.000 0.00 0.00 0.00 2.66
2253 2467 8.499514 TTTTGCAAAAGTCAAACATTTCAAAC 57.500 26.923 20.46 0.00 33.66 2.93
2254 2468 9.688592 ATTTTTGCAAAAGTCAAACATTTCAAA 57.311 22.222 22.78 4.68 33.66 2.69
2255 2469 9.339492 GATTTTTGCAAAAGTCAAACATTTCAA 57.661 25.926 31.15 12.48 35.47 2.69
2256 2470 8.728833 AGATTTTTGCAAAAGTCAAACATTTCA 58.271 25.926 34.74 15.56 37.17 2.69
2261 2475 9.474920 CCTATAGATTTTTGCAAAAGTCAAACA 57.525 29.630 34.74 22.58 37.17 2.83
2262 2476 8.435430 GCCTATAGATTTTTGCAAAAGTCAAAC 58.565 33.333 34.74 20.44 37.17 2.93
2263 2477 8.147058 TGCCTATAGATTTTTGCAAAAGTCAAA 58.853 29.630 34.74 26.42 37.17 2.69
2264 2478 7.598493 GTGCCTATAGATTTTTGCAAAAGTCAA 59.402 33.333 34.74 23.52 37.17 3.18
2265 2479 7.039784 AGTGCCTATAGATTTTTGCAAAAGTCA 60.040 33.333 34.74 25.12 37.17 3.41
2266 2480 7.315890 AGTGCCTATAGATTTTTGCAAAAGTC 58.684 34.615 29.81 29.81 35.58 3.01
2267 2481 7.232118 AGTGCCTATAGATTTTTGCAAAAGT 57.768 32.000 22.78 20.72 0.00 2.66
2268 2482 8.243426 TGTAGTGCCTATAGATTTTTGCAAAAG 58.757 33.333 22.78 10.71 0.00 2.27
2269 2483 8.116651 TGTAGTGCCTATAGATTTTTGCAAAA 57.883 30.769 20.46 20.46 0.00 2.44
2270 2484 7.695480 TGTAGTGCCTATAGATTTTTGCAAA 57.305 32.000 8.05 8.05 0.00 3.68
2271 2485 7.880160 ATGTAGTGCCTATAGATTTTTGCAA 57.120 32.000 0.00 0.00 0.00 4.08
2272 2486 7.880160 AATGTAGTGCCTATAGATTTTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
2273 2487 9.831737 CATAATGTAGTGCCTATAGATTTTTGC 57.168 33.333 0.00 0.00 0.00 3.68
2277 2491 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
2278 2492 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
2279 2493 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
2280 2494 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
2281 2495 6.071560 TCCGTTCCATAATGTAGTGCCTATAG 60.072 42.308 0.00 0.00 0.00 1.31
2282 2496 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
2283 2497 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
2284 2498 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
2285 2499 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
2286 2500 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
2287 2501 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
2288 2502 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
2289 2503 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
2290 2504 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
2291 2505 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2292 2506 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2293 2507 3.641906 ACTACTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
2294 2508 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2295 2509 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2296 2510 3.393426 AACTACTCCCTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
2297 2511 2.249309 AACTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
2298 2512 2.905415 TAACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2299 2513 4.750021 AATTAACTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
2300 2514 5.752472 GCTTAATTAACTACTCCCTCCGTTC 59.248 44.000 0.00 0.00 0.00 3.95
2301 2515 5.396101 GGCTTAATTAACTACTCCCTCCGTT 60.396 44.000 0.00 0.00 0.00 4.44
2302 2516 4.100653 GGCTTAATTAACTACTCCCTCCGT 59.899 45.833 0.00 0.00 0.00 4.69
2303 2517 4.100498 TGGCTTAATTAACTACTCCCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
2304 2518 5.365895 TCTGGCTTAATTAACTACTCCCTCC 59.634 44.000 0.00 0.00 0.00 4.30
2305 2519 6.481434 TCTGGCTTAATTAACTACTCCCTC 57.519 41.667 0.00 0.00 0.00 4.30
2306 2520 6.886178 TTCTGGCTTAATTAACTACTCCCT 57.114 37.500 0.00 0.00 0.00 4.20
2307 2521 7.054751 ACATTCTGGCTTAATTAACTACTCCC 58.945 38.462 0.00 0.00 0.00 4.30
2308 2522 8.507524 AACATTCTGGCTTAATTAACTACTCC 57.492 34.615 0.00 0.00 0.00 3.85
2309 2523 9.989869 GAAACATTCTGGCTTAATTAACTACTC 57.010 33.333 0.00 0.00 0.00 2.59
2310 2524 8.665685 CGAAACATTCTGGCTTAATTAACTACT 58.334 33.333 0.00 0.00 0.00 2.57
2311 2525 8.662141 TCGAAACATTCTGGCTTAATTAACTAC 58.338 33.333 0.00 0.00 0.00 2.73
2314 2528 6.745907 GGTCGAAACATTCTGGCTTAATTAAC 59.254 38.462 0.00 0.00 0.00 2.01
2473 2687 6.756542 ACAAAACTTGAGCAAACATAAGGAAC 59.243 34.615 0.00 0.00 0.00 3.62
2547 3219 4.133820 TCTCGAAACAGGCTTTCATTTCA 58.866 39.130 9.61 0.25 31.81 2.69
2548 3220 4.452455 TCTCTCGAAACAGGCTTTCATTTC 59.548 41.667 0.33 1.21 0.00 2.17
2552 3224 3.131396 GTTCTCTCGAAACAGGCTTTCA 58.869 45.455 0.33 0.00 0.00 2.69
2566 3238 4.817517 TCCTTGGTCGTTTATGTTCTCTC 58.182 43.478 0.00 0.00 0.00 3.20
2613 3285 6.889301 ATACATGGCTTTATCTCCAACATG 57.111 37.500 0.00 0.00 39.88 3.21
2636 3308 8.888579 AGTTTTGAGAGAAAAGAATAGACGAA 57.111 30.769 0.00 0.00 0.00 3.85
2637 3309 9.627395 CTAGTTTTGAGAGAAAAGAATAGACGA 57.373 33.333 0.00 0.00 0.00 4.20
2638 3310 9.413048 ACTAGTTTTGAGAGAAAAGAATAGACG 57.587 33.333 0.00 0.00 0.00 4.18
2996 3668 6.200854 GGCAAGAAAGACATTACAAAGTTTGG 59.799 38.462 19.45 4.48 34.12 3.28
3010 3682 0.449388 CATCAGCGGGCAAGAAAGAC 59.551 55.000 0.00 0.00 0.00 3.01
3047 3719 4.380843 TGCAGGGAAACTATGGAGAAAA 57.619 40.909 0.00 0.00 0.00 2.29
3135 3808 6.257849 TCAACTATACTAAATCTGCAAAGCCG 59.742 38.462 0.00 0.00 0.00 5.52
3198 3871 1.762370 TCTCCACAGCTTTCAGACACA 59.238 47.619 0.00 0.00 0.00 3.72
3210 3883 3.374220 TTTGCAATTTGCTCTCCACAG 57.626 42.857 21.19 0.00 45.31 3.66
3241 3915 9.877178 AATTTCTGTGATACCTAAGAAGTACTG 57.123 33.333 0.00 0.00 30.77 2.74
3397 4071 6.183360 TGGCCGGATATTTGGTAATTTCTTTC 60.183 38.462 5.05 0.00 0.00 2.62
3429 4103 1.179174 CCTCCGTCCTCTCACACACA 61.179 60.000 0.00 0.00 0.00 3.72
3577 4263 3.307108 TGGTCCACGTCGCCATCA 61.307 61.111 0.00 0.00 0.00 3.07
3636 4322 3.882326 CCCCGCCTCCATCTGCAT 61.882 66.667 0.00 0.00 0.00 3.96
3639 4325 4.864334 GCACCCCGCCTCCATCTG 62.864 72.222 0.00 0.00 32.94 2.90
3678 4364 1.306226 AACGAGGAGGCTAGGGCTT 60.306 57.895 0.00 0.00 38.98 4.35
3684 4370 2.058595 GGGAGCAACGAGGAGGCTA 61.059 63.158 0.00 0.00 38.15 3.93
3695 4381 1.602237 GTTCCTGGATCGGGAGCAA 59.398 57.895 12.79 0.00 40.34 3.91
3696 4382 2.721167 CGTTCCTGGATCGGGAGCA 61.721 63.158 17.33 0.00 39.61 4.26
3775 4461 1.194781 TGAAGGGAGAGGGTCACTGC 61.195 60.000 0.00 0.00 38.32 4.40
3791 4477 1.003839 GTGAGGTGTGGCGGATGAA 60.004 57.895 0.00 0.00 0.00 2.57
3795 4481 2.203640 AGAGTGAGGTGTGGCGGA 60.204 61.111 0.00 0.00 0.00 5.54
3837 4528 3.202151 GGAGAGAGAGAAGGAAGGAGAGA 59.798 52.174 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.