Multiple sequence alignment - TraesCS1D01G008800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G008800 chr1D 100.000 3198 0 0 1 3198 4606927 4603730 0.000000e+00 5906.0
1 TraesCS1D01G008800 chr1D 92.669 2428 127 24 1 2410 3515806 3518200 0.000000e+00 3450.0
2 TraesCS1D01G008800 chr1D 80.903 288 41 6 2922 3197 450032873 450032588 6.950000e-52 215.0
3 TraesCS1D01G008800 chr1D 87.912 91 10 1 3107 3197 190702361 190702450 4.360000e-19 106.0
4 TraesCS1D01G008800 chrUn 91.262 2552 180 18 5 2540 76524505 76521981 0.000000e+00 3437.0
5 TraesCS1D01G008800 chr1B 91.953 2448 164 16 5 2436 7611677 7609247 0.000000e+00 3398.0
6 TraesCS1D01G008800 chr1B 94.603 315 16 1 2594 2907 453521964 453522278 1.330000e-133 486.0
7 TraesCS1D01G008800 chr2D 94.225 329 15 3 2580 2907 645666379 645666054 1.710000e-137 499.0
8 TraesCS1D01G008800 chr2D 81.679 262 42 6 2923 3181 283295275 283295533 2.500000e-51 213.0
9 TraesCS1D01G008800 chr2D 79.008 262 47 6 2923 3181 199889320 199889064 4.240000e-39 172.0
10 TraesCS1D01G008800 chr2A 94.704 321 14 3 2594 2911 138922379 138922699 2.220000e-136 496.0
11 TraesCS1D01G008800 chr3B 94.410 322 17 1 2587 2907 92330452 92330131 7.970000e-136 494.0
12 TraesCS1D01G008800 chr3B 94.620 316 15 2 2594 2907 27513582 27513897 3.710000e-134 488.0
13 TraesCS1D01G008800 chr3B 94.322 317 14 4 2593 2907 12765068 12765382 1.730000e-132 483.0
14 TraesCS1D01G008800 chr3B 75.097 257 51 12 2947 3197 650374394 650374643 1.210000e-19 108.0
15 TraesCS1D01G008800 chr5B 94.921 315 15 1 2594 2907 638783200 638783514 2.870000e-135 492.0
16 TraesCS1D01G008800 chr5B 86.207 116 15 1 73 187 89027704 89027589 1.200000e-24 124.0
17 TraesCS1D01G008800 chr7D 94.603 315 16 1 2594 2907 162984683 162984997 1.330000e-133 486.0
18 TraesCS1D01G008800 chr7D 88.172 93 10 1 3106 3197 204887564 204887656 3.370000e-20 110.0
19 TraesCS1D01G008800 chr7D 87.692 65 8 0 574 638 14940374 14940310 3.420000e-10 76.8
20 TraesCS1D01G008800 chr4A 94.603 315 16 1 2594 2907 69306109 69305795 1.330000e-133 486.0
21 TraesCS1D01G008800 chr3A 81.724 290 38 10 2922 3198 45185070 45184783 8.920000e-56 228.0
22 TraesCS1D01G008800 chr3A 83.206 131 18 3 3049 3175 13447536 13447666 2.020000e-22 117.0
23 TraesCS1D01G008800 chr4B 81.071 280 50 2 2922 3198 388337530 388337251 1.490000e-53 220.0
24 TraesCS1D01G008800 chr2B 80.303 264 44 8 2922 3181 555931392 555931133 3.260000e-45 193.0
25 TraesCS1D01G008800 chr5A 80.357 168 26 6 23 186 76740140 76739976 1.560000e-23 121.0
26 TraesCS1D01G008800 chr4D 88.043 92 11 0 3106 3197 469411311 469411402 3.370000e-20 110.0
27 TraesCS1D01G008800 chr6D 86.813 91 12 0 3107 3197 256645128 256645038 5.640000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G008800 chr1D 4603730 4606927 3197 True 5906 5906 100.000 1 3198 1 chr1D.!!$R1 3197
1 TraesCS1D01G008800 chr1D 3515806 3518200 2394 False 3450 3450 92.669 1 2410 1 chr1D.!!$F1 2409
2 TraesCS1D01G008800 chrUn 76521981 76524505 2524 True 3437 3437 91.262 5 2540 1 chrUn.!!$R1 2535
3 TraesCS1D01G008800 chr1B 7609247 7611677 2430 True 3398 3398 91.953 5 2436 1 chr1B.!!$R1 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 803 1.222298 GGTCCTAGATAGGTTGGGGGA 59.778 57.143 5.82 0.0 44.02 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2797 2827 0.033109 GTCCTTTGGGGCCTTAGCAT 60.033 55.0 0.84 0.0 42.56 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.680874 TTGCAAAAAGAAAATCTGCAACAT 57.319 29.167 0.00 0.00 45.38 2.71
228 229 7.224557 ACATGCCACAAAACTAAACATTTCTTC 59.775 33.333 0.00 0.00 0.00 2.87
231 232 6.640907 GCCACAAAACTAAACATTTCTTCGAT 59.359 34.615 0.00 0.00 0.00 3.59
255 256 9.965902 GATGGAAGGTTATATCTTTACATGGAT 57.034 33.333 7.84 0.00 0.00 3.41
330 331 1.741706 CATGTGTCATGCTCCAGGTTC 59.258 52.381 0.00 0.00 0.00 3.62
361 362 6.243148 TGAATTACTGGTCCCTAGTTTTTCC 58.757 40.000 0.00 0.00 0.00 3.13
378 379 6.879458 AGTTTTTCCGCTGACTAGATAATTGT 59.121 34.615 0.00 0.00 0.00 2.71
381 382 3.958147 TCCGCTGACTAGATAATTGTCCA 59.042 43.478 0.00 0.00 33.28 4.02
385 386 5.059161 GCTGACTAGATAATTGTCCATGCA 58.941 41.667 0.00 0.00 33.28 3.96
393 394 3.404224 AATTGTCCATGCATTGCAACA 57.596 38.095 16.46 12.73 43.62 3.33
669 672 4.512944 CGCTACATATTGTTGGATGAAGCT 59.487 41.667 0.00 0.00 0.00 3.74
681 684 1.538687 ATGAAGCTTTGTGCCTGGCC 61.539 55.000 17.53 8.23 44.23 5.36
753 758 3.335356 ATGGAGGTGGCCGAGCTTG 62.335 63.158 0.00 0.00 30.42 4.01
798 803 1.222298 GGTCCTAGATAGGTTGGGGGA 59.778 57.143 5.82 0.00 44.02 4.81
810 815 3.031013 GGTTGGGGGAAAATAGGTCATG 58.969 50.000 0.00 0.00 0.00 3.07
814 819 4.058731 TGGGGGAAAATAGGTCATGGTAT 58.941 43.478 0.00 0.00 0.00 2.73
816 821 4.832823 GGGGGAAAATAGGTCATGGTATTG 59.167 45.833 0.00 0.00 0.00 1.90
817 822 5.454966 GGGGAAAATAGGTCATGGTATTGT 58.545 41.667 0.00 0.00 0.00 2.71
818 823 5.897250 GGGGAAAATAGGTCATGGTATTGTT 59.103 40.000 0.00 0.00 0.00 2.83
861 868 8.492415 TCTTGGTTATGTATTCTAGCCATAGT 57.508 34.615 0.00 0.00 30.74 2.12
889 896 9.797642 TTGTATGCATATCTTACTTTCCATGAT 57.202 29.630 10.16 0.00 0.00 2.45
990 997 9.477484 GACGTCTTAACATATGAATGATAGGTT 57.523 33.333 10.38 0.00 42.68 3.50
1021 1028 1.272592 TGGCCAAGATCAATGAGGCAA 60.273 47.619 0.61 0.00 46.96 4.52
1120 1127 3.951680 AGGCAAGTTCTTCCGAAAAGAAA 59.048 39.130 12.62 0.00 37.93 2.52
1122 1129 4.202020 GGCAAGTTCTTCCGAAAAGAAAGT 60.202 41.667 12.62 3.65 37.93 2.66
1134 1141 5.176223 CCGAAAAGAAAGTCGTAACAAGCTA 59.824 40.000 0.00 0.00 35.48 3.32
1325 1344 2.030213 GTGCGATGTCTGATCAGAAAGC 59.970 50.000 26.70 22.84 39.48 3.51
1435 1454 0.664761 CCATGCTTCCGGCTGTAATG 59.335 55.000 0.00 0.00 42.39 1.90
1491 1510 2.826428 TCATTTCATAGCGGAGACAGC 58.174 47.619 0.00 0.00 0.00 4.40
1533 1552 8.103948 AGGTTGATCTAACAGATTTCTTGTTG 57.896 34.615 9.31 0.00 41.18 3.33
1582 1601 4.793678 GCAACAAGCACATCATCTCAAACA 60.794 41.667 0.00 0.00 44.79 2.83
1633 1652 1.098050 GGCCACACATGATGAGGAAC 58.902 55.000 0.00 0.00 41.39 3.62
1729 1748 6.435277 ACATGATTTACCTGAAAGCAGTCATT 59.565 34.615 0.00 0.00 46.06 2.57
1932 1951 3.425713 CGACGGCAATGCAGCACT 61.426 61.111 7.79 0.00 35.83 4.40
1934 1953 1.286880 GACGGCAATGCAGCACTTT 59.713 52.632 7.79 0.00 35.83 2.66
2224 2243 7.542025 AGCACCATCATCTTTTCTTAAATGTC 58.458 34.615 0.00 0.00 0.00 3.06
2360 2390 2.793278 AAAAGTTGTTGTCATCCGGC 57.207 45.000 0.00 0.00 0.00 6.13
2361 2391 1.686355 AAAGTTGTTGTCATCCGGCA 58.314 45.000 0.00 0.00 0.00 5.69
2362 2392 1.238439 AAGTTGTTGTCATCCGGCAG 58.762 50.000 0.00 0.00 0.00 4.85
2363 2393 0.606401 AGTTGTTGTCATCCGGCAGG 60.606 55.000 0.00 0.00 39.46 4.85
2364 2394 1.971167 TTGTTGTCATCCGGCAGGC 60.971 57.895 0.00 0.00 37.47 4.85
2365 2395 2.045926 GTTGTCATCCGGCAGGCT 60.046 61.111 0.00 0.00 37.47 4.58
2366 2396 2.109126 GTTGTCATCCGGCAGGCTC 61.109 63.158 0.00 0.00 37.47 4.70
2367 2397 3.329542 TTGTCATCCGGCAGGCTCC 62.330 63.158 0.00 0.00 37.47 4.70
2368 2398 3.785859 GTCATCCGGCAGGCTCCA 61.786 66.667 0.00 0.00 37.47 3.86
2369 2399 3.473647 TCATCCGGCAGGCTCCAG 61.474 66.667 0.00 0.00 37.47 3.86
2439 2469 0.687354 AGTCGGCCAACTTCTGTGAT 59.313 50.000 2.24 0.00 0.00 3.06
2450 2480 4.630644 ACTTCTGTGATCTTGGTGATGT 57.369 40.909 0.00 0.00 35.14 3.06
2454 2484 4.507710 TCTGTGATCTTGGTGATGTAAGC 58.492 43.478 0.00 0.00 35.14 3.09
2472 2502 0.804933 GCGTGTATTGTCCGGAGTCC 60.805 60.000 3.06 0.00 0.00 3.85
2474 2504 2.019249 CGTGTATTGTCCGGAGTCCTA 58.981 52.381 3.06 0.00 0.00 2.94
2489 2519 4.936411 GGAGTCCTAGGTTCTTTGCTAAAC 59.064 45.833 9.08 0.00 0.00 2.01
2495 2525 6.434028 TCCTAGGTTCTTTGCTAAACGTAGTA 59.566 38.462 9.08 0.00 45.00 1.82
2507 2537 7.474190 TGCTAAACGTAGTAATTTTAATGGCC 58.526 34.615 0.00 0.00 45.00 5.36
2511 2541 4.885325 ACGTAGTAATTTTAATGGCCCCTG 59.115 41.667 0.00 0.00 41.94 4.45
2515 2545 4.721274 AGTAATTTTAATGGCCCCTGCATT 59.279 37.500 0.00 0.00 40.13 3.56
2516 2546 5.902431 AGTAATTTTAATGGCCCCTGCATTA 59.098 36.000 0.00 0.00 40.13 1.90
2536 2566 7.973388 TGCATTATTTAATGTTTAGCACCAGAC 59.027 33.333 10.99 0.00 43.72 3.51
2544 2574 9.906660 TTAATGTTTAGCACCAGACTAATTTTG 57.093 29.630 0.00 0.00 30.07 2.44
2545 2575 6.952773 TGTTTAGCACCAGACTAATTTTGT 57.047 33.333 0.00 0.00 30.07 2.83
2546 2576 6.966021 TGTTTAGCACCAGACTAATTTTGTC 58.034 36.000 3.19 3.19 34.88 3.18
2547 2577 6.016610 TGTTTAGCACCAGACTAATTTTGTCC 60.017 38.462 7.27 0.00 35.21 4.02
2548 2578 3.421844 AGCACCAGACTAATTTTGTCCC 58.578 45.455 7.27 0.00 35.21 4.46
2549 2579 3.074538 AGCACCAGACTAATTTTGTCCCT 59.925 43.478 7.27 0.00 35.21 4.20
2550 2580 4.288626 AGCACCAGACTAATTTTGTCCCTA 59.711 41.667 7.27 0.00 35.21 3.53
2551 2581 4.636206 GCACCAGACTAATTTTGTCCCTAG 59.364 45.833 7.27 0.00 35.21 3.02
2552 2582 4.636206 CACCAGACTAATTTTGTCCCTAGC 59.364 45.833 7.27 0.00 35.21 3.42
2553 2583 3.871594 CCAGACTAATTTTGTCCCTAGCG 59.128 47.826 7.27 0.00 35.21 4.26
2554 2584 3.309954 CAGACTAATTTTGTCCCTAGCGC 59.690 47.826 0.00 0.00 35.21 5.92
2555 2585 3.055385 AGACTAATTTTGTCCCTAGCGCA 60.055 43.478 11.47 0.00 35.21 6.09
2556 2586 3.877508 GACTAATTTTGTCCCTAGCGCAT 59.122 43.478 11.47 0.00 0.00 4.73
2557 2587 3.877508 ACTAATTTTGTCCCTAGCGCATC 59.122 43.478 11.47 0.00 0.00 3.91
2558 2588 2.418368 ATTTTGTCCCTAGCGCATCA 57.582 45.000 11.47 0.00 0.00 3.07
2559 2589 1.448985 TTTTGTCCCTAGCGCATCAC 58.551 50.000 11.47 0.00 0.00 3.06
2561 2591 1.884075 TTGTCCCTAGCGCATCACGT 61.884 55.000 11.47 0.00 46.11 4.49
2562 2592 1.033202 TGTCCCTAGCGCATCACGTA 61.033 55.000 11.47 0.00 46.11 3.57
2563 2593 0.314302 GTCCCTAGCGCATCACGTAT 59.686 55.000 11.47 0.00 46.11 3.06
2564 2594 1.538512 GTCCCTAGCGCATCACGTATA 59.461 52.381 11.47 0.00 46.11 1.47
2565 2595 1.538512 TCCCTAGCGCATCACGTATAC 59.461 52.381 11.47 0.00 46.11 1.47
2566 2596 1.540267 CCCTAGCGCATCACGTATACT 59.460 52.381 11.47 0.00 46.11 2.12
2567 2597 2.745821 CCCTAGCGCATCACGTATACTA 59.254 50.000 11.47 0.00 46.11 1.82
2568 2598 3.181509 CCCTAGCGCATCACGTATACTAG 60.182 52.174 11.47 0.00 46.11 2.57
2569 2599 3.683340 CCTAGCGCATCACGTATACTAGA 59.317 47.826 11.47 0.00 46.11 2.43
2570 2600 3.815337 AGCGCATCACGTATACTAGAG 57.185 47.619 11.47 0.00 46.11 2.43
2571 2601 3.139850 AGCGCATCACGTATACTAGAGT 58.860 45.455 11.47 0.00 46.11 3.24
2572 2602 3.564644 AGCGCATCACGTATACTAGAGTT 59.435 43.478 11.47 0.00 46.11 3.01
2573 2603 3.664486 GCGCATCACGTATACTAGAGTTG 59.336 47.826 0.30 0.00 46.11 3.16
2574 2604 3.664486 CGCATCACGTATACTAGAGTTGC 59.336 47.826 0.00 5.81 36.87 4.17
2575 2605 3.982058 GCATCACGTATACTAGAGTTGCC 59.018 47.826 0.00 0.00 0.00 4.52
2576 2606 4.261656 GCATCACGTATACTAGAGTTGCCT 60.262 45.833 0.00 0.00 0.00 4.75
2577 2607 5.736492 GCATCACGTATACTAGAGTTGCCTT 60.736 44.000 0.00 0.00 0.00 4.35
2578 2608 5.244785 TCACGTATACTAGAGTTGCCTTG 57.755 43.478 0.00 0.00 0.00 3.61
2579 2609 4.945543 TCACGTATACTAGAGTTGCCTTGA 59.054 41.667 0.00 0.00 0.00 3.02
2580 2610 5.593095 TCACGTATACTAGAGTTGCCTTGAT 59.407 40.000 0.00 0.00 0.00 2.57
2581 2611 5.687730 CACGTATACTAGAGTTGCCTTGATG 59.312 44.000 0.00 0.00 0.00 3.07
2582 2612 5.360144 ACGTATACTAGAGTTGCCTTGATGT 59.640 40.000 0.00 0.00 0.00 3.06
2583 2613 5.687730 CGTATACTAGAGTTGCCTTGATGTG 59.312 44.000 0.00 0.00 0.00 3.21
2584 2614 2.704572 ACTAGAGTTGCCTTGATGTGC 58.295 47.619 0.00 0.00 0.00 4.57
2585 2615 1.662629 CTAGAGTTGCCTTGATGTGCG 59.337 52.381 0.00 0.00 0.00 5.34
2586 2616 0.035317 AGAGTTGCCTTGATGTGCGA 59.965 50.000 0.00 0.00 0.00 5.10
2587 2617 0.874390 GAGTTGCCTTGATGTGCGAA 59.126 50.000 0.00 0.00 0.00 4.70
2588 2618 0.877071 AGTTGCCTTGATGTGCGAAG 59.123 50.000 0.00 0.00 0.00 3.79
2589 2619 0.874390 GTTGCCTTGATGTGCGAAGA 59.126 50.000 0.00 0.00 0.00 2.87
2590 2620 0.874390 TTGCCTTGATGTGCGAAGAC 59.126 50.000 0.00 0.00 0.00 3.01
2591 2621 0.035317 TGCCTTGATGTGCGAAGACT 59.965 50.000 0.00 0.00 0.00 3.24
2592 2622 0.445436 GCCTTGATGTGCGAAGACTG 59.555 55.000 0.00 0.00 0.00 3.51
2593 2623 1.800805 CCTTGATGTGCGAAGACTGT 58.199 50.000 0.00 0.00 0.00 3.55
2594 2624 2.146342 CCTTGATGTGCGAAGACTGTT 58.854 47.619 0.00 0.00 0.00 3.16
2595 2625 2.549754 CCTTGATGTGCGAAGACTGTTT 59.450 45.455 0.00 0.00 0.00 2.83
2596 2626 3.003689 CCTTGATGTGCGAAGACTGTTTT 59.996 43.478 0.00 0.00 0.00 2.43
2597 2627 4.498009 CCTTGATGTGCGAAGACTGTTTTT 60.498 41.667 0.00 0.00 0.00 1.94
2636 2666 9.787435 ATTTCCAATTTATTCATCAATCATGGG 57.213 29.630 0.00 0.00 32.64 4.00
2637 2667 8.550280 TTCCAATTTATTCATCAATCATGGGA 57.450 30.769 0.00 0.00 32.64 4.37
2638 2668 8.185506 TCCAATTTATTCATCAATCATGGGAG 57.814 34.615 0.00 0.00 32.64 4.30
2639 2669 7.785985 TCCAATTTATTCATCAATCATGGGAGT 59.214 33.333 0.00 0.00 32.64 3.85
2640 2670 9.081204 CCAATTTATTCATCAATCATGGGAGTA 57.919 33.333 0.00 0.00 32.64 2.59
2648 2678 8.908786 TCATCAATCATGGGAGTATAGAAAAC 57.091 34.615 0.00 0.00 32.64 2.43
2649 2679 8.493607 TCATCAATCATGGGAGTATAGAAAACA 58.506 33.333 0.00 0.00 32.64 2.83
2650 2680 8.562892 CATCAATCATGGGAGTATAGAAAACAC 58.437 37.037 0.00 0.00 0.00 3.32
2651 2681 7.629157 TCAATCATGGGAGTATAGAAAACACA 58.371 34.615 0.00 0.00 0.00 3.72
2652 2682 8.106462 TCAATCATGGGAGTATAGAAAACACAA 58.894 33.333 0.00 0.00 0.00 3.33
2653 2683 8.400947 CAATCATGGGAGTATAGAAAACACAAG 58.599 37.037 0.00 0.00 0.00 3.16
2654 2684 7.252612 TCATGGGAGTATAGAAAACACAAGA 57.747 36.000 0.00 0.00 0.00 3.02
2655 2685 7.331026 TCATGGGAGTATAGAAAACACAAGAG 58.669 38.462 0.00 0.00 0.00 2.85
2656 2686 6.049955 TGGGAGTATAGAAAACACAAGAGG 57.950 41.667 0.00 0.00 0.00 3.69
2657 2687 5.546499 TGGGAGTATAGAAAACACAAGAGGT 59.454 40.000 0.00 0.00 0.00 3.85
2658 2688 6.727231 TGGGAGTATAGAAAACACAAGAGGTA 59.273 38.462 0.00 0.00 0.00 3.08
2659 2689 7.236019 TGGGAGTATAGAAAACACAAGAGGTAA 59.764 37.037 0.00 0.00 0.00 2.85
2660 2690 8.265764 GGGAGTATAGAAAACACAAGAGGTAAT 58.734 37.037 0.00 0.00 0.00 1.89
2694 2724 1.688772 GTCTATGGACCACCTAGCGA 58.311 55.000 0.00 0.00 36.53 4.93
2695 2725 1.337387 GTCTATGGACCACCTAGCGAC 59.663 57.143 0.00 0.00 36.53 5.19
2696 2726 0.311165 CTATGGACCACCTAGCGACG 59.689 60.000 0.00 0.00 37.04 5.12
2697 2727 0.107066 TATGGACCACCTAGCGACGA 60.107 55.000 0.00 0.00 37.04 4.20
2698 2728 1.664321 ATGGACCACCTAGCGACGAC 61.664 60.000 0.00 0.00 37.04 4.34
2699 2729 2.045131 GGACCACCTAGCGACGACT 61.045 63.158 0.00 0.00 0.00 4.18
2700 2730 0.745845 GGACCACCTAGCGACGACTA 60.746 60.000 0.00 0.00 0.00 2.59
2701 2731 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
2702 2732 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
2703 2733 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
2704 2734 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
2705 2735 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
2706 2736 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
2707 2737 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
2708 2738 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
2709 2739 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
2710 2740 1.344942 GCGACGACTACAAGCACTGG 61.345 60.000 0.00 0.00 0.00 4.00
2711 2741 0.240145 CGACGACTACAAGCACTGGA 59.760 55.000 0.00 0.00 0.00 3.86
2712 2742 1.729472 CGACGACTACAAGCACTGGAG 60.729 57.143 0.00 0.00 42.47 3.86
2713 2743 0.038159 ACGACTACAAGCACTGGAGC 60.038 55.000 0.00 0.00 40.05 4.70
2714 2744 1.073216 CGACTACAAGCACTGGAGCG 61.073 60.000 0.00 0.53 40.05 5.03
2715 2745 0.243907 GACTACAAGCACTGGAGCGA 59.756 55.000 0.00 0.00 40.05 4.93
2716 2746 0.244994 ACTACAAGCACTGGAGCGAG 59.755 55.000 0.00 0.00 40.05 5.03
2717 2747 1.079819 TACAAGCACTGGAGCGAGC 60.080 57.895 0.00 0.00 40.15 5.03
2718 2748 2.507110 TACAAGCACTGGAGCGAGCC 62.507 60.000 0.00 0.00 40.15 4.70
2719 2749 4.749310 AAGCACTGGAGCGAGCCG 62.749 66.667 0.00 0.00 40.15 5.52
2721 2751 4.742201 GCACTGGAGCGAGCCGAA 62.742 66.667 0.00 0.00 0.00 4.30
2722 2752 2.507992 CACTGGAGCGAGCCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
2745 2775 4.530857 CCGCCGTCATCACCCCTC 62.531 72.222 0.00 0.00 0.00 4.30
2746 2776 4.530857 CGCCGTCATCACCCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
2747 2777 3.399181 GCCGTCATCACCCCTCCA 61.399 66.667 0.00 0.00 0.00 3.86
2748 2778 2.746375 GCCGTCATCACCCCTCCAT 61.746 63.158 0.00 0.00 0.00 3.41
2749 2779 1.447643 CCGTCATCACCCCTCCATC 59.552 63.158 0.00 0.00 0.00 3.51
2750 2780 1.337384 CCGTCATCACCCCTCCATCA 61.337 60.000 0.00 0.00 0.00 3.07
2751 2781 0.179073 CGTCATCACCCCTCCATCAC 60.179 60.000 0.00 0.00 0.00 3.06
2752 2782 0.181350 GTCATCACCCCTCCATCACC 59.819 60.000 0.00 0.00 0.00 4.02
2753 2783 1.146930 CATCACCCCTCCATCACCG 59.853 63.158 0.00 0.00 0.00 4.94
2754 2784 2.072487 ATCACCCCTCCATCACCGG 61.072 63.158 0.00 0.00 0.00 5.28
2755 2785 2.545550 ATCACCCCTCCATCACCGGA 62.546 60.000 9.46 0.00 0.00 5.14
2760 2790 4.941609 CTCCATCACCGGAGTTGG 57.058 61.111 19.68 19.68 46.48 3.77
2761 2791 1.221840 CTCCATCACCGGAGTTGGG 59.778 63.158 23.66 13.55 46.48 4.12
2762 2792 2.438434 CCATCACCGGAGTTGGGC 60.438 66.667 18.39 0.00 0.00 5.36
2763 2793 2.350895 CATCACCGGAGTTGGGCA 59.649 61.111 9.46 0.00 0.00 5.36
2764 2794 1.303236 CATCACCGGAGTTGGGCAA 60.303 57.895 9.46 0.00 0.00 4.52
2765 2795 0.893270 CATCACCGGAGTTGGGCAAA 60.893 55.000 9.46 0.00 0.00 3.68
2766 2796 0.893727 ATCACCGGAGTTGGGCAAAC 60.894 55.000 9.46 0.00 39.24 2.93
2767 2797 2.203437 ACCGGAGTTGGGCAAACC 60.203 61.111 9.46 0.00 39.85 3.27
2768 2798 2.115266 CCGGAGTTGGGCAAACCT 59.885 61.111 0.00 0.00 39.85 3.50
2769 2799 1.530655 CCGGAGTTGGGCAAACCTT 60.531 57.895 0.00 0.00 39.85 3.50
2770 2800 1.659794 CGGAGTTGGGCAAACCTTG 59.340 57.895 0.00 0.00 39.85 3.61
2771 2801 1.106944 CGGAGTTGGGCAAACCTTGT 61.107 55.000 0.00 0.00 39.85 3.16
2772 2802 1.119684 GGAGTTGGGCAAACCTTGTT 58.880 50.000 0.00 0.00 39.85 2.83
2773 2803 2.312390 GGAGTTGGGCAAACCTTGTTA 58.688 47.619 0.00 0.00 39.85 2.41
2774 2804 2.897326 GGAGTTGGGCAAACCTTGTTAT 59.103 45.455 0.00 0.00 39.85 1.89
2775 2805 4.083565 GGAGTTGGGCAAACCTTGTTATA 58.916 43.478 0.00 0.00 39.85 0.98
2776 2806 4.157840 GGAGTTGGGCAAACCTTGTTATAG 59.842 45.833 0.00 0.00 39.85 1.31
2777 2807 4.736473 AGTTGGGCAAACCTTGTTATAGT 58.264 39.130 0.00 0.00 39.85 2.12
2778 2808 5.883180 AGTTGGGCAAACCTTGTTATAGTA 58.117 37.500 0.00 0.00 39.85 1.82
2779 2809 5.944007 AGTTGGGCAAACCTTGTTATAGTAG 59.056 40.000 0.00 0.00 39.85 2.57
2780 2810 5.765576 TGGGCAAACCTTGTTATAGTAGA 57.234 39.130 0.00 0.00 41.11 2.59
2781 2811 5.493809 TGGGCAAACCTTGTTATAGTAGAC 58.506 41.667 0.00 0.00 41.11 2.59
2782 2812 5.013287 TGGGCAAACCTTGTTATAGTAGACA 59.987 40.000 0.00 0.00 41.11 3.41
2783 2813 5.585047 GGGCAAACCTTGTTATAGTAGACAG 59.415 44.000 0.00 0.00 35.85 3.51
2784 2814 6.171213 GGCAAACCTTGTTATAGTAGACAGT 58.829 40.000 0.00 0.00 0.00 3.55
2785 2815 6.313164 GGCAAACCTTGTTATAGTAGACAGTC 59.687 42.308 0.00 0.00 0.00 3.51
2786 2816 6.034683 GCAAACCTTGTTATAGTAGACAGTCG 59.965 42.308 0.00 0.00 0.00 4.18
2787 2817 5.831702 ACCTTGTTATAGTAGACAGTCGG 57.168 43.478 0.00 0.00 0.00 4.79
2788 2818 4.643784 ACCTTGTTATAGTAGACAGTCGGG 59.356 45.833 0.00 0.00 0.00 5.14
2789 2819 4.885907 CCTTGTTATAGTAGACAGTCGGGA 59.114 45.833 0.00 0.00 0.00 5.14
2790 2820 5.359009 CCTTGTTATAGTAGACAGTCGGGAA 59.641 44.000 0.00 0.00 0.00 3.97
2791 2821 6.446781 TTGTTATAGTAGACAGTCGGGAAG 57.553 41.667 0.00 0.00 0.00 3.46
2792 2822 5.503927 TGTTATAGTAGACAGTCGGGAAGT 58.496 41.667 0.00 0.00 0.00 3.01
2793 2823 5.587844 TGTTATAGTAGACAGTCGGGAAGTC 59.412 44.000 0.00 0.00 0.00 3.01
2794 2824 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
2795 2825 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
2796 2826 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
2797 2827 0.536687 AGACAGTCGGGAAGTCGTCA 60.537 55.000 0.00 0.00 37.36 4.35
2798 2828 0.526662 GACAGTCGGGAAGTCGTCAT 59.473 55.000 0.00 0.00 0.00 3.06
2799 2829 0.243907 ACAGTCGGGAAGTCGTCATG 59.756 55.000 0.00 0.00 0.00 3.07
2800 2830 1.078759 CAGTCGGGAAGTCGTCATGC 61.079 60.000 0.00 0.00 0.00 4.06
2801 2831 1.215647 GTCGGGAAGTCGTCATGCT 59.784 57.895 0.00 0.00 0.00 3.79
2802 2832 0.454600 GTCGGGAAGTCGTCATGCTA 59.545 55.000 0.00 0.00 0.00 3.49
2803 2833 1.135199 GTCGGGAAGTCGTCATGCTAA 60.135 52.381 0.00 0.00 0.00 3.09
2804 2834 1.134367 TCGGGAAGTCGTCATGCTAAG 59.866 52.381 0.00 0.00 0.00 2.18
2805 2835 1.802880 CGGGAAGTCGTCATGCTAAGG 60.803 57.143 0.00 0.00 0.00 2.69
2806 2836 1.291132 GGAAGTCGTCATGCTAAGGC 58.709 55.000 0.00 0.00 39.26 4.35
2807 2837 1.291132 GAAGTCGTCATGCTAAGGCC 58.709 55.000 0.00 0.00 37.74 5.19
2808 2838 0.107654 AAGTCGTCATGCTAAGGCCC 60.108 55.000 0.00 0.00 37.74 5.80
2809 2839 1.523938 GTCGTCATGCTAAGGCCCC 60.524 63.158 0.00 0.00 37.74 5.80
2810 2840 1.992834 TCGTCATGCTAAGGCCCCA 60.993 57.895 0.00 0.00 37.74 4.96
2811 2841 1.077787 CGTCATGCTAAGGCCCCAA 60.078 57.895 0.00 0.00 37.74 4.12
2812 2842 0.679640 CGTCATGCTAAGGCCCCAAA 60.680 55.000 0.00 0.00 37.74 3.28
2813 2843 1.106285 GTCATGCTAAGGCCCCAAAG 58.894 55.000 0.00 0.00 37.74 2.77
2814 2844 0.033208 TCATGCTAAGGCCCCAAAGG 60.033 55.000 0.00 0.00 37.74 3.11
2815 2845 0.033208 CATGCTAAGGCCCCAAAGGA 60.033 55.000 0.00 0.00 38.24 3.36
2821 2851 3.984732 GGCCCCAAAGGACCAGCT 61.985 66.667 0.00 0.00 37.96 4.24
2822 2852 2.361737 GCCCCAAAGGACCAGCTC 60.362 66.667 0.00 0.00 38.24 4.09
2823 2853 3.170362 CCCCAAAGGACCAGCTCA 58.830 61.111 0.00 0.00 38.24 4.26
2824 2854 1.303643 CCCCAAAGGACCAGCTCAC 60.304 63.158 0.00 0.00 38.24 3.51
2825 2855 1.303643 CCCAAAGGACCAGCTCACC 60.304 63.158 0.00 0.00 33.47 4.02
2826 2856 1.455849 CCAAAGGACCAGCTCACCA 59.544 57.895 0.00 0.00 0.00 4.17
2827 2857 0.607489 CCAAAGGACCAGCTCACCAG 60.607 60.000 0.00 0.00 0.00 4.00
2828 2858 0.397941 CAAAGGACCAGCTCACCAGA 59.602 55.000 0.00 0.00 0.00 3.86
2829 2859 0.689623 AAAGGACCAGCTCACCAGAG 59.310 55.000 0.00 0.00 44.96 3.35
2837 2867 3.978272 CTCACCAGAGCAGCAACC 58.022 61.111 0.00 0.00 34.61 3.77
2838 2868 1.071987 CTCACCAGAGCAGCAACCA 59.928 57.895 0.00 0.00 34.61 3.67
2839 2869 0.322277 CTCACCAGAGCAGCAACCAT 60.322 55.000 0.00 0.00 34.61 3.55
2840 2870 0.321919 TCACCAGAGCAGCAACCATC 60.322 55.000 0.00 0.00 0.00 3.51
2841 2871 1.376424 ACCAGAGCAGCAACCATCG 60.376 57.895 0.00 0.00 0.00 3.84
2842 2872 2.758089 CCAGAGCAGCAACCATCGC 61.758 63.158 0.00 0.00 0.00 4.58
2843 2873 1.744368 CAGAGCAGCAACCATCGCT 60.744 57.895 0.00 0.00 41.47 4.93
2849 2879 3.556817 AGCAACCATCGCTGATGAA 57.443 47.368 16.69 0.00 42.09 2.57
2850 2880 1.376543 AGCAACCATCGCTGATGAAG 58.623 50.000 16.69 9.07 42.09 3.02
2851 2881 1.065926 AGCAACCATCGCTGATGAAGA 60.066 47.619 16.69 0.00 42.09 2.87
2852 2882 1.329906 GCAACCATCGCTGATGAAGAG 59.670 52.381 16.69 5.84 42.09 2.85
2853 2883 2.897436 CAACCATCGCTGATGAAGAGA 58.103 47.619 16.69 0.00 42.09 3.10
2854 2884 2.864946 CAACCATCGCTGATGAAGAGAG 59.135 50.000 16.69 5.02 42.09 3.20
2855 2885 2.106566 ACCATCGCTGATGAAGAGAGT 58.893 47.619 16.69 5.51 42.09 3.24
2856 2886 2.499289 ACCATCGCTGATGAAGAGAGTT 59.501 45.455 16.69 0.00 42.09 3.01
2857 2887 2.864946 CCATCGCTGATGAAGAGAGTTG 59.135 50.000 16.69 0.00 42.09 3.16
2858 2888 3.519579 CATCGCTGATGAAGAGAGTTGT 58.480 45.455 11.55 0.00 42.09 3.32
2859 2889 4.440663 CCATCGCTGATGAAGAGAGTTGTA 60.441 45.833 16.69 0.00 42.09 2.41
2860 2890 4.362932 TCGCTGATGAAGAGAGTTGTAG 57.637 45.455 0.00 0.00 30.37 2.74
2861 2891 4.010349 TCGCTGATGAAGAGAGTTGTAGA 58.990 43.478 0.00 0.00 30.37 2.59
2862 2892 4.642437 TCGCTGATGAAGAGAGTTGTAGAT 59.358 41.667 0.00 0.00 30.37 1.98
2863 2893 5.126222 TCGCTGATGAAGAGAGTTGTAGATT 59.874 40.000 0.00 0.00 30.37 2.40
2864 2894 5.231779 CGCTGATGAAGAGAGTTGTAGATTG 59.768 44.000 0.00 0.00 0.00 2.67
2865 2895 5.523188 GCTGATGAAGAGAGTTGTAGATTGG 59.477 44.000 0.00 0.00 0.00 3.16
2866 2896 6.629068 GCTGATGAAGAGAGTTGTAGATTGGA 60.629 42.308 0.00 0.00 0.00 3.53
2867 2897 7.244886 TGATGAAGAGAGTTGTAGATTGGAA 57.755 36.000 0.00 0.00 0.00 3.53
2868 2898 7.679783 TGATGAAGAGAGTTGTAGATTGGAAA 58.320 34.615 0.00 0.00 0.00 3.13
2869 2899 7.821359 TGATGAAGAGAGTTGTAGATTGGAAAG 59.179 37.037 0.00 0.00 0.00 2.62
2870 2900 7.303182 TGAAGAGAGTTGTAGATTGGAAAGA 57.697 36.000 0.00 0.00 0.00 2.52
2871 2901 7.911651 TGAAGAGAGTTGTAGATTGGAAAGAT 58.088 34.615 0.00 0.00 0.00 2.40
2872 2902 8.037758 TGAAGAGAGTTGTAGATTGGAAAGATC 58.962 37.037 0.00 0.00 0.00 2.75
2873 2903 7.487822 AGAGAGTTGTAGATTGGAAAGATCA 57.512 36.000 0.00 0.00 0.00 2.92
2874 2904 7.911651 AGAGAGTTGTAGATTGGAAAGATCAA 58.088 34.615 0.00 0.00 0.00 2.57
2875 2905 8.378565 AGAGAGTTGTAGATTGGAAAGATCAAA 58.621 33.333 0.00 0.00 0.00 2.69
2876 2906 8.329203 AGAGTTGTAGATTGGAAAGATCAAAC 57.671 34.615 0.00 0.00 0.00 2.93
2877 2907 7.391833 AGAGTTGTAGATTGGAAAGATCAAACC 59.608 37.037 0.00 0.00 0.00 3.27
2878 2908 7.234355 AGTTGTAGATTGGAAAGATCAAACCT 58.766 34.615 0.00 0.00 0.00 3.50
2879 2909 7.175641 AGTTGTAGATTGGAAAGATCAAACCTG 59.824 37.037 0.00 0.00 0.00 4.00
2880 2910 6.778821 TGTAGATTGGAAAGATCAAACCTGA 58.221 36.000 0.00 0.00 35.56 3.86
2881 2911 7.230747 TGTAGATTGGAAAGATCAAACCTGAA 58.769 34.615 0.00 0.00 34.49 3.02
2882 2912 7.723616 TGTAGATTGGAAAGATCAAACCTGAAA 59.276 33.333 0.00 0.00 34.49 2.69
2883 2913 6.986250 AGATTGGAAAGATCAAACCTGAAAC 58.014 36.000 0.00 0.00 34.49 2.78
2884 2914 5.529581 TTGGAAAGATCAAACCTGAAACC 57.470 39.130 0.00 0.00 34.49 3.27
2885 2915 4.541705 TGGAAAGATCAAACCTGAAACCA 58.458 39.130 0.00 0.00 34.49 3.67
2886 2916 4.340950 TGGAAAGATCAAACCTGAAACCAC 59.659 41.667 0.00 0.00 34.49 4.16
2887 2917 4.340950 GGAAAGATCAAACCTGAAACCACA 59.659 41.667 0.00 0.00 34.49 4.17
2888 2918 4.918810 AAGATCAAACCTGAAACCACAC 57.081 40.909 0.00 0.00 34.49 3.82
2889 2919 2.878406 AGATCAAACCTGAAACCACACG 59.122 45.455 0.00 0.00 34.49 4.49
2890 2920 2.404923 TCAAACCTGAAACCACACGA 57.595 45.000 0.00 0.00 0.00 4.35
2891 2921 2.712709 TCAAACCTGAAACCACACGAA 58.287 42.857 0.00 0.00 0.00 3.85
2892 2922 2.420722 TCAAACCTGAAACCACACGAAC 59.579 45.455 0.00 0.00 0.00 3.95
2893 2923 1.011333 AACCTGAAACCACACGAACG 58.989 50.000 0.00 0.00 0.00 3.95
2894 2924 0.176219 ACCTGAAACCACACGAACGA 59.824 50.000 0.14 0.00 0.00 3.85
2895 2925 1.292061 CCTGAAACCACACGAACGAA 58.708 50.000 0.14 0.00 0.00 3.85
2896 2926 1.260561 CCTGAAACCACACGAACGAAG 59.739 52.381 0.14 0.00 0.00 3.79
2897 2927 2.198406 CTGAAACCACACGAACGAAGA 58.802 47.619 0.14 0.00 0.00 2.87
2898 2928 1.928503 TGAAACCACACGAACGAAGAC 59.071 47.619 0.14 0.00 0.00 3.01
2899 2929 0.925466 AAACCACACGAACGAAGACG 59.075 50.000 0.14 0.00 45.75 4.18
2900 2930 0.101040 AACCACACGAACGAAGACGA 59.899 50.000 0.14 0.00 42.66 4.20
2901 2931 0.101040 ACCACACGAACGAAGACGAA 59.899 50.000 0.14 0.00 42.66 3.85
2902 2932 0.501435 CCACACGAACGAAGACGAAC 59.499 55.000 0.14 0.00 42.66 3.95
2903 2933 1.193644 CACACGAACGAAGACGAACA 58.806 50.000 0.14 0.00 42.66 3.18
2904 2934 1.584761 CACACGAACGAAGACGAACAA 59.415 47.619 0.14 0.00 42.66 2.83
2905 2935 2.028284 CACACGAACGAAGACGAACAAA 59.972 45.455 0.14 0.00 42.66 2.83
2906 2936 2.667481 ACACGAACGAAGACGAACAAAA 59.333 40.909 0.14 0.00 42.66 2.44
2907 2937 3.017576 CACGAACGAAGACGAACAAAAC 58.982 45.455 0.14 0.00 42.66 2.43
2908 2938 2.925563 ACGAACGAAGACGAACAAAACT 59.074 40.909 0.14 0.00 42.66 2.66
2909 2939 4.027458 CACGAACGAAGACGAACAAAACTA 60.027 41.667 0.14 0.00 42.66 2.24
2910 2940 4.205792 ACGAACGAAGACGAACAAAACTAG 59.794 41.667 0.14 0.00 42.66 2.57
2911 2941 4.374707 CGAACGAAGACGAACAAAACTAGG 60.375 45.833 0.00 0.00 42.66 3.02
2912 2942 3.387397 ACGAAGACGAACAAAACTAGGG 58.613 45.455 0.00 0.00 42.66 3.53
2913 2943 2.157085 CGAAGACGAACAAAACTAGGGC 59.843 50.000 0.00 0.00 42.66 5.19
2914 2944 3.400255 GAAGACGAACAAAACTAGGGCT 58.600 45.455 0.00 0.00 0.00 5.19
2915 2945 3.487120 AGACGAACAAAACTAGGGCTT 57.513 42.857 0.00 0.00 0.00 4.35
2916 2946 3.400255 AGACGAACAAAACTAGGGCTTC 58.600 45.455 0.00 0.00 0.00 3.86
2917 2947 3.135994 GACGAACAAAACTAGGGCTTCA 58.864 45.455 0.00 0.00 0.00 3.02
2918 2948 2.876550 ACGAACAAAACTAGGGCTTCAC 59.123 45.455 0.00 0.00 0.00 3.18
2919 2949 2.875933 CGAACAAAACTAGGGCTTCACA 59.124 45.455 0.00 0.00 0.00 3.58
2920 2950 3.314080 CGAACAAAACTAGGGCTTCACAA 59.686 43.478 0.00 0.00 0.00 3.33
2921 2951 4.554723 CGAACAAAACTAGGGCTTCACAAG 60.555 45.833 0.00 0.00 0.00 3.16
2922 2952 3.898482 ACAAAACTAGGGCTTCACAAGT 58.102 40.909 0.00 0.00 0.00 3.16
2923 2953 3.883489 ACAAAACTAGGGCTTCACAAGTC 59.117 43.478 0.00 0.00 0.00 3.01
2924 2954 2.457366 AACTAGGGCTTCACAAGTCG 57.543 50.000 0.00 0.00 32.70 4.18
2925 2955 1.629043 ACTAGGGCTTCACAAGTCGA 58.371 50.000 0.00 0.00 32.70 4.20
2926 2956 2.180276 ACTAGGGCTTCACAAGTCGAT 58.820 47.619 0.00 0.00 32.70 3.59
2927 2957 2.567615 ACTAGGGCTTCACAAGTCGATT 59.432 45.455 0.00 0.00 32.70 3.34
2928 2958 2.568623 AGGGCTTCACAAGTCGATTT 57.431 45.000 0.00 0.00 32.70 2.17
2929 2959 2.427506 AGGGCTTCACAAGTCGATTTC 58.572 47.619 0.00 0.00 32.70 2.17
2930 2960 1.468914 GGGCTTCACAAGTCGATTTCC 59.531 52.381 0.00 0.00 32.70 3.13
2931 2961 1.468914 GGCTTCACAAGTCGATTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
2932 2962 2.427506 GCTTCACAAGTCGATTTCCCT 58.572 47.619 0.00 0.00 0.00 4.20
2933 2963 3.596214 GCTTCACAAGTCGATTTCCCTA 58.404 45.455 0.00 0.00 0.00 3.53
2934 2964 3.619038 GCTTCACAAGTCGATTTCCCTAG 59.381 47.826 0.00 0.00 0.00 3.02
2935 2965 3.887621 TCACAAGTCGATTTCCCTAGG 57.112 47.619 0.06 0.06 0.00 3.02
2936 2966 2.500098 TCACAAGTCGATTTCCCTAGGG 59.500 50.000 23.22 23.22 0.00 3.53
2937 2967 2.236395 CACAAGTCGATTTCCCTAGGGT 59.764 50.000 27.58 8.62 36.47 4.34
2938 2968 2.910977 ACAAGTCGATTTCCCTAGGGTT 59.089 45.455 27.58 13.62 36.47 4.11
2939 2969 3.329814 ACAAGTCGATTTCCCTAGGGTTT 59.670 43.478 27.58 13.26 36.47 3.27
2940 2970 3.908643 AGTCGATTTCCCTAGGGTTTC 57.091 47.619 27.58 19.54 36.47 2.78
2941 2971 3.451890 AGTCGATTTCCCTAGGGTTTCT 58.548 45.455 27.58 10.88 36.47 2.52
2942 2972 3.197983 AGTCGATTTCCCTAGGGTTTCTG 59.802 47.826 27.58 15.43 36.47 3.02
2943 2973 2.504175 TCGATTTCCCTAGGGTTTCTGG 59.496 50.000 27.58 13.39 36.47 3.86
2944 2974 2.421529 CGATTTCCCTAGGGTTTCTGGG 60.422 54.545 27.58 8.46 43.09 4.45
2945 2975 2.444033 TTTCCCTAGGGTTTCTGGGA 57.556 50.000 27.58 2.48 45.98 4.37
2946 2976 2.680439 TTCCCTAGGGTTTCTGGGAT 57.320 50.000 27.58 0.00 45.98 3.85
2947 2977 2.680439 TCCCTAGGGTTTCTGGGATT 57.320 50.000 27.58 0.00 45.98 3.01
2948 2978 2.205342 TCCCTAGGGTTTCTGGGATTG 58.795 52.381 27.58 0.00 45.98 2.67
2949 2979 1.923148 CCCTAGGGTTTCTGGGATTGT 59.077 52.381 20.88 0.00 45.98 2.71
2950 2980 3.120108 CCCTAGGGTTTCTGGGATTGTA 58.880 50.000 20.88 0.00 45.98 2.41
2951 2981 3.526019 CCCTAGGGTTTCTGGGATTGTAA 59.474 47.826 20.88 0.00 45.98 2.41
2952 2982 4.017867 CCCTAGGGTTTCTGGGATTGTAAA 60.018 45.833 20.88 0.00 45.98 2.01
2953 2983 5.193679 CCTAGGGTTTCTGGGATTGTAAAG 58.806 45.833 0.00 0.00 45.98 1.85
2954 2984 4.741928 AGGGTTTCTGGGATTGTAAAGT 57.258 40.909 0.00 0.00 0.00 2.66
2955 2985 5.853572 AGGGTTTCTGGGATTGTAAAGTA 57.146 39.130 0.00 0.00 0.00 2.24
2956 2986 6.402981 AGGGTTTCTGGGATTGTAAAGTAT 57.597 37.500 0.00 0.00 0.00 2.12
2957 2987 6.800890 AGGGTTTCTGGGATTGTAAAGTATT 58.199 36.000 0.00 0.00 0.00 1.89
2958 2988 7.246027 AGGGTTTCTGGGATTGTAAAGTATTT 58.754 34.615 0.00 0.00 43.42 1.40
2959 2989 8.395605 AGGGTTTCTGGGATTGTAAAGTATTTA 58.604 33.333 0.00 0.00 40.09 1.40
2960 2990 9.197306 GGGTTTCTGGGATTGTAAAGTATTTAT 57.803 33.333 0.00 0.00 43.30 1.40
2968 2998 9.503399 GGGATTGTAAAGTATTTATAGAGGTGG 57.497 37.037 0.00 0.00 43.30 4.61
2976 3006 9.503369 AAAGTATTTATAGAGGTGGAAGTAGGT 57.497 33.333 0.00 0.00 35.86 3.08
2977 3007 8.709272 AGTATTTATAGAGGTGGAAGTAGGTC 57.291 38.462 0.00 0.00 0.00 3.85
2978 3008 8.287350 AGTATTTATAGAGGTGGAAGTAGGTCA 58.713 37.037 0.00 0.00 0.00 4.02
2979 3009 7.989947 ATTTATAGAGGTGGAAGTAGGTCAA 57.010 36.000 0.00 0.00 0.00 3.18
2980 3010 7.419711 TTTATAGAGGTGGAAGTAGGTCAAG 57.580 40.000 0.00 0.00 0.00 3.02
2981 3011 2.541466 AGAGGTGGAAGTAGGTCAAGG 58.459 52.381 0.00 0.00 0.00 3.61
2982 3012 1.555533 GAGGTGGAAGTAGGTCAAGGG 59.444 57.143 0.00 0.00 0.00 3.95
2983 3013 0.618981 GGTGGAAGTAGGTCAAGGGG 59.381 60.000 0.00 0.00 0.00 4.79
2984 3014 0.618981 GTGGAAGTAGGTCAAGGGGG 59.381 60.000 0.00 0.00 0.00 5.40
3010 3040 4.174305 GGTTCCACAACCCACCAG 57.826 61.111 0.00 0.00 46.01 4.00
3011 3041 1.530655 GGTTCCACAACCCACCAGG 60.531 63.158 0.00 0.00 46.01 4.45
3022 3052 4.742201 CACCAGGTGTCGCCGGAG 62.742 72.222 11.99 0.00 43.70 4.63
3034 3064 4.135153 CCGGAGGCCTCTGACACG 62.135 72.222 38.46 27.80 46.14 4.49
3035 3065 4.803426 CGGAGGCCTCTGACACGC 62.803 72.222 34.60 13.99 38.21 5.34
3036 3066 4.459089 GGAGGCCTCTGACACGCC 62.459 72.222 31.36 10.04 43.35 5.68
3037 3067 4.459089 GAGGCCTCTGACACGCCC 62.459 72.222 26.25 0.00 44.13 6.13
3039 3069 4.021925 GGCCTCTGACACGCCCTT 62.022 66.667 0.00 0.00 36.63 3.95
3040 3070 2.743928 GCCTCTGACACGCCCTTG 60.744 66.667 0.00 0.00 0.00 3.61
3041 3071 2.743718 CCTCTGACACGCCCTTGT 59.256 61.111 0.00 0.00 0.00 3.16
3042 3072 1.669115 CCTCTGACACGCCCTTGTG 60.669 63.158 0.00 0.00 45.41 3.33
3043 3073 2.280797 TCTGACACGCCCTTGTGC 60.281 61.111 0.00 0.00 43.74 4.57
3044 3074 3.357079 CTGACACGCCCTTGTGCC 61.357 66.667 0.00 0.00 43.74 5.01
3045 3075 3.832237 CTGACACGCCCTTGTGCCT 62.832 63.158 0.00 0.00 43.74 4.75
3046 3076 2.345991 GACACGCCCTTGTGCCTA 59.654 61.111 0.00 0.00 43.74 3.93
3047 3077 1.741770 GACACGCCCTTGTGCCTAG 60.742 63.158 0.00 0.00 43.74 3.02
3048 3078 2.347490 CACGCCCTTGTGCCTAGT 59.653 61.111 0.00 0.00 32.31 2.57
3049 3079 2.034879 CACGCCCTTGTGCCTAGTG 61.035 63.158 0.00 0.00 32.31 2.74
3050 3080 2.436646 CGCCCTTGTGCCTAGTGG 60.437 66.667 0.00 0.00 0.00 4.00
3051 3081 2.044946 GCCCTTGTGCCTAGTGGG 60.045 66.667 0.00 0.00 40.74 4.61
3069 3099 4.227134 CCCACGGGCCTCATCTCG 62.227 72.222 0.84 0.00 0.00 4.04
3070 3100 3.461773 CCACGGGCCTCATCTCGT 61.462 66.667 0.84 0.00 36.19 4.18
3071 3101 2.202797 CACGGGCCTCATCTCGTG 60.203 66.667 14.15 14.15 44.98 4.35
3072 3102 2.680352 ACGGGCCTCATCTCGTGT 60.680 61.111 0.84 0.00 34.40 4.49
3073 3103 2.202797 CGGGCCTCATCTCGTGTG 60.203 66.667 0.84 0.00 0.00 3.82
3074 3104 2.512515 GGGCCTCATCTCGTGTGC 60.513 66.667 0.84 0.00 0.00 4.57
3075 3105 2.581354 GGCCTCATCTCGTGTGCT 59.419 61.111 0.00 0.00 0.00 4.40
3076 3106 1.520342 GGCCTCATCTCGTGTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
3077 3107 1.520342 GCCTCATCTCGTGTGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
3078 3108 1.893062 CCTCATCTCGTGTGCTCCA 59.107 57.895 0.00 0.00 0.00 3.86
3079 3109 0.179116 CCTCATCTCGTGTGCTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
3080 3110 0.813821 CTCATCTCGTGTGCTCCAGA 59.186 55.000 0.00 0.00 0.00 3.86
3081 3111 1.203287 CTCATCTCGTGTGCTCCAGAA 59.797 52.381 0.00 0.00 0.00 3.02
3082 3112 1.203287 TCATCTCGTGTGCTCCAGAAG 59.797 52.381 0.00 0.00 0.00 2.85
3093 3123 2.035530 CTCCAGAAGCTTCCATGGTC 57.964 55.000 25.85 0.83 34.32 4.02
3094 3124 0.620556 TCCAGAAGCTTCCATGGTCC 59.379 55.000 25.85 1.17 34.32 4.46
3095 3125 0.329261 CCAGAAGCTTCCATGGTCCA 59.671 55.000 22.81 0.00 0.00 4.02
3096 3126 1.064166 CCAGAAGCTTCCATGGTCCAT 60.064 52.381 22.81 0.00 0.00 3.41
3097 3127 2.622452 CCAGAAGCTTCCATGGTCCATT 60.622 50.000 22.81 3.18 0.00 3.16
3098 3128 3.371917 CCAGAAGCTTCCATGGTCCATTA 60.372 47.826 22.81 0.00 0.00 1.90
3099 3129 4.467769 CAGAAGCTTCCATGGTCCATTAT 58.532 43.478 22.81 0.00 0.00 1.28
3100 3130 4.518211 CAGAAGCTTCCATGGTCCATTATC 59.482 45.833 22.81 3.39 0.00 1.75
3101 3131 4.166725 AGAAGCTTCCATGGTCCATTATCA 59.833 41.667 22.81 0.00 0.00 2.15
3102 3132 3.825328 AGCTTCCATGGTCCATTATCAC 58.175 45.455 12.58 0.00 0.00 3.06
3103 3133 2.887152 GCTTCCATGGTCCATTATCACC 59.113 50.000 12.58 0.00 0.00 4.02
3104 3134 3.688126 GCTTCCATGGTCCATTATCACCA 60.688 47.826 12.58 0.00 46.84 4.17
3105 3135 3.576078 TCCATGGTCCATTATCACCAC 57.424 47.619 12.58 0.00 45.61 4.16
3106 3136 2.849318 TCCATGGTCCATTATCACCACA 59.151 45.455 12.58 0.00 45.61 4.17
3107 3137 3.268072 TCCATGGTCCATTATCACCACAA 59.732 43.478 12.58 0.00 45.61 3.33
3108 3138 4.022603 CCATGGTCCATTATCACCACAAA 58.977 43.478 2.57 0.00 45.61 2.83
3109 3139 4.465660 CCATGGTCCATTATCACCACAAAA 59.534 41.667 2.57 0.00 45.61 2.44
3110 3140 5.046735 CCATGGTCCATTATCACCACAAAAA 60.047 40.000 2.57 0.00 45.61 1.94
3132 3162 6.435430 AAAATCTCCAAAAAGTTTTGTGGC 57.565 33.333 17.69 0.00 43.81 5.01
3133 3163 4.751767 ATCTCCAAAAAGTTTTGTGGCA 57.248 36.364 17.69 11.03 43.81 4.92
3134 3164 4.543590 TCTCCAAAAAGTTTTGTGGCAA 57.456 36.364 17.69 9.90 43.81 4.52
3135 3165 5.096443 TCTCCAAAAAGTTTTGTGGCAAT 57.904 34.783 17.69 0.00 43.81 3.56
3136 3166 5.495640 TCTCCAAAAAGTTTTGTGGCAATT 58.504 33.333 17.69 0.00 43.81 2.32
3137 3167 5.353678 TCTCCAAAAAGTTTTGTGGCAATTG 59.646 36.000 17.69 0.00 43.81 2.32
3138 3168 5.248640 TCCAAAAAGTTTTGTGGCAATTGA 58.751 33.333 10.34 1.25 43.81 2.57
3139 3169 5.707298 TCCAAAAAGTTTTGTGGCAATTGAA 59.293 32.000 10.34 0.00 43.81 2.69
3140 3170 5.799435 CCAAAAAGTTTTGTGGCAATTGAAC 59.201 36.000 10.34 7.19 44.52 3.18
3141 3171 6.349197 CCAAAAAGTTTTGTGGCAATTGAACT 60.349 34.615 10.34 5.89 44.52 3.01
3142 3172 6.816134 AAAAGTTTTGTGGCAATTGAACTT 57.184 29.167 10.34 11.69 38.54 2.66
3143 3173 6.816134 AAAGTTTTGTGGCAATTGAACTTT 57.184 29.167 19.71 19.71 40.48 2.66
3144 3174 5.799681 AGTTTTGTGGCAATTGAACTTTG 57.200 34.783 10.34 0.00 0.00 2.77
3145 3175 5.244755 AGTTTTGTGGCAATTGAACTTTGT 58.755 33.333 10.34 0.00 0.00 2.83
3146 3176 5.704978 AGTTTTGTGGCAATTGAACTTTGTT 59.295 32.000 10.34 0.00 0.00 2.83
3147 3177 6.206438 AGTTTTGTGGCAATTGAACTTTGTTT 59.794 30.769 10.34 0.00 0.00 2.83
3148 3178 5.542616 TTGTGGCAATTGAACTTTGTTTG 57.457 34.783 10.34 0.00 0.00 2.93
3149 3179 4.825422 TGTGGCAATTGAACTTTGTTTGA 58.175 34.783 10.34 0.00 0.00 2.69
3150 3180 5.426504 TGTGGCAATTGAACTTTGTTTGAT 58.573 33.333 10.34 0.00 0.00 2.57
3151 3181 5.523188 TGTGGCAATTGAACTTTGTTTGATC 59.477 36.000 10.34 0.00 0.00 2.92
3152 3182 5.754890 GTGGCAATTGAACTTTGTTTGATCT 59.245 36.000 10.34 0.00 0.00 2.75
3153 3183 6.258507 GTGGCAATTGAACTTTGTTTGATCTT 59.741 34.615 10.34 0.00 0.00 2.40
3154 3184 6.258287 TGGCAATTGAACTTTGTTTGATCTTG 59.742 34.615 10.34 0.00 0.00 3.02
3155 3185 6.479660 GGCAATTGAACTTTGTTTGATCTTGA 59.520 34.615 10.34 0.00 0.00 3.02
3156 3186 7.172019 GGCAATTGAACTTTGTTTGATCTTGAT 59.828 33.333 10.34 0.00 0.00 2.57
3157 3187 9.195411 GCAATTGAACTTTGTTTGATCTTGATA 57.805 29.630 10.34 0.00 0.00 2.15
3163 3193 9.565213 GAACTTTGTTTGATCTTGATATTCTGG 57.435 33.333 0.00 0.00 0.00 3.86
3164 3194 8.868522 ACTTTGTTTGATCTTGATATTCTGGA 57.131 30.769 0.00 0.00 0.00 3.86
3165 3195 9.300681 ACTTTGTTTGATCTTGATATTCTGGAA 57.699 29.630 0.00 0.00 0.00 3.53
3168 3198 9.912634 TTGTTTGATCTTGATATTCTGGAAAAC 57.087 29.630 0.00 0.00 0.00 2.43
3169 3199 9.076781 TGTTTGATCTTGATATTCTGGAAAACA 57.923 29.630 0.00 0.00 32.11 2.83
3170 3200 9.912634 GTTTGATCTTGATATTCTGGAAAACAA 57.087 29.630 0.00 0.00 0.00 2.83
3194 3224 3.982241 GCAACTGGCACTGGGCAC 61.982 66.667 3.46 0.00 45.76 5.01
3195 3225 2.203394 CAACTGGCACTGGGCACT 60.203 61.111 3.46 0.00 45.76 4.40
3196 3226 1.073025 CAACTGGCACTGGGCACTA 59.927 57.895 3.46 0.00 45.76 2.74
3197 3227 0.957395 CAACTGGCACTGGGCACTAG 60.957 60.000 3.46 1.09 45.76 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 1.301479 GTGGGATCCGGCGTAATCC 60.301 63.158 23.13 23.13 40.69 3.01
178 179 8.573035 TGTGTATAAAGAAAGGGATGTGAAAAC 58.427 33.333 0.00 0.00 0.00 2.43
228 229 8.094548 TCCATGTAAAGATATAACCTTCCATCG 58.905 37.037 0.00 0.00 0.00 3.84
313 314 0.036732 TGGAACCTGGAGCATGACAC 59.963 55.000 0.00 0.00 0.00 3.67
330 331 4.407365 AGGGACCAGTAATTCAAAGTTGG 58.593 43.478 0.00 0.00 0.00 3.77
361 362 4.151335 GCATGGACAATTATCTAGTCAGCG 59.849 45.833 0.00 0.00 34.04 5.18
378 379 0.542467 ACCCTGTTGCAATGCATGGA 60.542 50.000 9.39 0.00 38.76 3.41
381 382 5.874897 ATATTTACCCTGTTGCAATGCAT 57.125 34.783 9.39 0.00 38.76 3.96
615 617 4.760204 TCCCTCTCTCCGTTTTGATTTTTC 59.240 41.667 0.00 0.00 0.00 2.29
656 659 1.340889 GGCACAAAGCTTCATCCAACA 59.659 47.619 0.00 0.00 44.79 3.33
669 672 2.123683 TTTCCGGCCAGGCACAAA 60.124 55.556 15.19 5.67 40.77 2.83
681 684 2.758009 TGACGTAAAGTTCCCTTTCCG 58.242 47.619 0.00 0.00 43.29 4.30
833 840 6.769512 TGGCTAGAATACATAACCAAGATCC 58.230 40.000 0.00 0.00 0.00 3.36
990 997 3.138098 TGATCTTGGCCATGGTAATGCTA 59.862 43.478 17.95 0.00 31.93 3.49
997 1004 2.662866 CTCATTGATCTTGGCCATGGT 58.337 47.619 17.95 11.69 0.00 3.55
1021 1028 0.534203 ACCGTTGAACCTGTTGCGAT 60.534 50.000 0.00 0.00 0.00 4.58
1120 1127 3.767673 TCCTGGAATAGCTTGTTACGACT 59.232 43.478 0.00 0.00 0.00 4.18
1122 1129 3.118884 GGTCCTGGAATAGCTTGTTACGA 60.119 47.826 0.00 0.00 0.00 3.43
1134 1141 5.514484 GCTATCATTGATCAGGTCCTGGAAT 60.514 44.000 19.11 11.50 31.51 3.01
1325 1344 2.872245 ACATCGATAAAATCAGCACCCG 59.128 45.455 0.00 0.00 0.00 5.28
1491 1510 2.726821 ACCTAGCCAAATCCACATGTG 58.273 47.619 19.31 19.31 0.00 3.21
1582 1601 3.644966 TCAACAAGGGTGAACTCAAGT 57.355 42.857 0.00 0.00 0.00 3.16
1633 1652 2.820787 ACTCCTGACCTCGTCTTGTAAG 59.179 50.000 0.00 0.00 33.15 2.34
1729 1748 1.752498 TGTAGCCGGAGCGATTCTTTA 59.248 47.619 5.05 0.00 46.67 1.85
1963 1982 1.347062 GTCCTGCCCCAAATGGAAAA 58.653 50.000 0.00 0.00 37.39 2.29
1966 1985 1.784301 TTCGTCCTGCCCCAAATGGA 61.784 55.000 0.00 0.00 37.39 3.41
2100 2119 2.162338 TAGCCCAAACACCTCCGTCG 62.162 60.000 0.00 0.00 0.00 5.12
2224 2243 8.415192 TGGTCGCACTTTATTACACTTAATAG 57.585 34.615 0.00 0.00 32.77 1.73
2326 2346 6.493189 ACAACTTTTATTGTGGGGATGTTT 57.507 33.333 0.00 0.00 41.29 2.83
2335 2356 5.629020 CCGGATGACAACAACTTTTATTGTG 59.371 40.000 0.00 0.00 42.01 3.33
2360 2390 2.046507 GGCAGACACTGGAGCCTG 60.047 66.667 0.00 0.00 43.70 4.85
2361 2391 3.699894 CGGCAGACACTGGAGCCT 61.700 66.667 0.00 0.00 44.85 4.58
2362 2392 3.023949 ATCGGCAGACACTGGAGCC 62.024 63.158 0.00 0.00 43.61 4.70
2363 2393 1.812922 CATCGGCAGACACTGGAGC 60.813 63.158 0.00 0.00 31.21 4.70
2364 2394 0.459237 GACATCGGCAGACACTGGAG 60.459 60.000 0.00 0.00 31.21 3.86
2365 2395 1.591703 GACATCGGCAGACACTGGA 59.408 57.895 0.00 0.00 31.21 3.86
2366 2396 1.448540 GGACATCGGCAGACACTGG 60.449 63.158 0.00 0.00 31.21 4.00
2367 2397 1.448540 GGGACATCGGCAGACACTG 60.449 63.158 0.00 0.00 34.12 3.66
2368 2398 1.913262 TGGGACATCGGCAGACACT 60.913 57.895 0.00 0.00 0.00 3.55
2369 2399 1.741770 GTGGGACATCGGCAGACAC 60.742 63.158 0.00 0.00 44.52 3.67
2439 2469 2.831685 ACACGCTTACATCACCAAGA 57.168 45.000 0.00 0.00 0.00 3.02
2450 2480 1.820519 ACTCCGGACAATACACGCTTA 59.179 47.619 0.00 0.00 0.00 3.09
2454 2484 0.815734 AGGACTCCGGACAATACACG 59.184 55.000 0.00 0.00 0.00 4.49
2472 2502 8.699283 ATTACTACGTTTAGCAAAGAACCTAG 57.301 34.615 0.00 0.00 0.00 3.02
2474 2504 7.974482 AATTACTACGTTTAGCAAAGAACCT 57.026 32.000 0.00 0.00 0.00 3.50
2489 2519 4.261447 GCAGGGGCCATTAAAATTACTACG 60.261 45.833 4.39 0.00 0.00 3.51
2495 2525 5.910355 ATAATGCAGGGGCCATTAAAATT 57.090 34.783 4.39 0.00 40.13 1.82
2507 2537 6.701400 GGTGCTAAACATTAAATAATGCAGGG 59.299 38.462 12.01 3.77 45.24 4.45
2511 2541 8.190784 AGTCTGGTGCTAAACATTAAATAATGC 58.809 33.333 12.01 0.54 45.24 3.56
2536 2566 3.876914 TGATGCGCTAGGGACAAAATTAG 59.123 43.478 11.61 0.00 0.00 1.73
2540 2570 1.448985 GTGATGCGCTAGGGACAAAA 58.551 50.000 11.61 0.00 0.00 2.44
2541 2571 0.739462 CGTGATGCGCTAGGGACAAA 60.739 55.000 11.61 0.00 0.00 2.83
2542 2572 1.153647 CGTGATGCGCTAGGGACAA 60.154 57.895 11.61 0.00 0.00 3.18
2543 2573 1.033202 TACGTGATGCGCTAGGGACA 61.033 55.000 11.61 8.56 46.11 4.02
2544 2574 0.314302 ATACGTGATGCGCTAGGGAC 59.686 55.000 11.61 2.70 46.11 4.46
2545 2575 1.538512 GTATACGTGATGCGCTAGGGA 59.461 52.381 11.61 0.00 46.11 4.20
2546 2576 1.540267 AGTATACGTGATGCGCTAGGG 59.460 52.381 9.73 1.65 46.11 3.53
2547 2577 2.991434 AGTATACGTGATGCGCTAGG 57.009 50.000 9.73 3.45 46.11 3.02
2548 2578 4.389382 ACTCTAGTATACGTGATGCGCTAG 59.611 45.833 9.73 0.00 46.11 3.42
2549 2579 4.313282 ACTCTAGTATACGTGATGCGCTA 58.687 43.478 9.73 0.00 46.11 4.26
2550 2580 3.139850 ACTCTAGTATACGTGATGCGCT 58.860 45.455 9.73 0.00 46.11 5.92
2551 2581 3.539431 ACTCTAGTATACGTGATGCGC 57.461 47.619 0.00 0.00 46.11 6.09
2553 2583 3.982058 GGCAACTCTAGTATACGTGATGC 59.018 47.826 0.00 13.46 0.00 3.91
2570 2600 0.874390 TCTTCGCACATCAAGGCAAC 59.126 50.000 0.00 0.00 0.00 4.17
2571 2601 0.874390 GTCTTCGCACATCAAGGCAA 59.126 50.000 0.00 0.00 0.00 4.52
2572 2602 0.035317 AGTCTTCGCACATCAAGGCA 59.965 50.000 0.00 0.00 0.00 4.75
2573 2603 0.445436 CAGTCTTCGCACATCAAGGC 59.555 55.000 0.00 0.00 0.00 4.35
2574 2604 1.800805 ACAGTCTTCGCACATCAAGG 58.199 50.000 0.00 0.00 0.00 3.61
2575 2605 3.885484 AAACAGTCTTCGCACATCAAG 57.115 42.857 0.00 0.00 0.00 3.02
2576 2606 4.630894 AAAAACAGTCTTCGCACATCAA 57.369 36.364 0.00 0.00 0.00 2.57
2610 2640 9.787435 CCCATGATTGATGAATAAATTGGAAAT 57.213 29.630 0.00 0.00 33.31 2.17
2611 2641 8.990203 TCCCATGATTGATGAATAAATTGGAAA 58.010 29.630 0.00 0.00 33.31 3.13
2612 2642 8.550280 TCCCATGATTGATGAATAAATTGGAA 57.450 30.769 0.00 0.00 33.31 3.53
2613 2643 7.785985 ACTCCCATGATTGATGAATAAATTGGA 59.214 33.333 0.00 0.00 33.31 3.53
2614 2644 7.959175 ACTCCCATGATTGATGAATAAATTGG 58.041 34.615 0.00 0.00 33.31 3.16
2622 2652 9.342308 GTTTTCTATACTCCCATGATTGATGAA 57.658 33.333 0.00 0.00 33.31 2.57
2623 2653 8.493607 TGTTTTCTATACTCCCATGATTGATGA 58.506 33.333 0.00 0.00 33.31 2.92
2624 2654 8.562892 GTGTTTTCTATACTCCCATGATTGATG 58.437 37.037 0.00 0.00 0.00 3.07
2625 2655 8.274322 TGTGTTTTCTATACTCCCATGATTGAT 58.726 33.333 0.00 0.00 0.00 2.57
2626 2656 7.629157 TGTGTTTTCTATACTCCCATGATTGA 58.371 34.615 0.00 0.00 0.00 2.57
2627 2657 7.864108 TGTGTTTTCTATACTCCCATGATTG 57.136 36.000 0.00 0.00 0.00 2.67
2628 2658 8.328758 TCTTGTGTTTTCTATACTCCCATGATT 58.671 33.333 0.00 0.00 0.00 2.57
2629 2659 7.861629 TCTTGTGTTTTCTATACTCCCATGAT 58.138 34.615 0.00 0.00 0.00 2.45
2630 2660 7.252612 TCTTGTGTTTTCTATACTCCCATGA 57.747 36.000 0.00 0.00 0.00 3.07
2631 2661 6.540189 CCTCTTGTGTTTTCTATACTCCCATG 59.460 42.308 0.00 0.00 0.00 3.66
2632 2662 6.215636 ACCTCTTGTGTTTTCTATACTCCCAT 59.784 38.462 0.00 0.00 0.00 4.00
2633 2663 5.546499 ACCTCTTGTGTTTTCTATACTCCCA 59.454 40.000 0.00 0.00 0.00 4.37
2634 2664 6.051179 ACCTCTTGTGTTTTCTATACTCCC 57.949 41.667 0.00 0.00 0.00 4.30
2675 2705 1.337387 GTCGCTAGGTGGTCCATAGAC 59.663 57.143 0.00 0.00 42.73 2.59
2676 2706 1.688772 GTCGCTAGGTGGTCCATAGA 58.311 55.000 0.00 0.00 35.89 1.98
2677 2707 0.311165 CGTCGCTAGGTGGTCCATAG 59.689 60.000 0.00 0.00 35.89 2.23
2678 2708 0.107066 TCGTCGCTAGGTGGTCCATA 60.107 55.000 0.00 0.00 35.89 2.74
2679 2709 1.379443 TCGTCGCTAGGTGGTCCAT 60.379 57.895 0.00 0.00 35.89 3.41
2680 2710 2.034532 TCGTCGCTAGGTGGTCCA 59.965 61.111 0.00 0.00 35.89 4.02
2681 2711 0.745845 TAGTCGTCGCTAGGTGGTCC 60.746 60.000 0.00 0.00 0.00 4.46
2682 2712 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
2683 2713 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
2684 2714 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
2685 2715 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
2686 2716 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
2687 2717 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
2688 2718 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
2689 2719 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
2690 2720 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
2691 2721 1.344942 CCAGTGCTTGTAGTCGTCGC 61.345 60.000 0.00 0.00 0.00 5.19
2692 2722 0.240145 TCCAGTGCTTGTAGTCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
2693 2723 1.983972 CTCCAGTGCTTGTAGTCGTC 58.016 55.000 0.00 0.00 0.00 4.20
2694 2724 0.038159 GCTCCAGTGCTTGTAGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
2695 2725 1.073216 CGCTCCAGTGCTTGTAGTCG 61.073 60.000 0.00 0.00 0.00 4.18
2696 2726 0.243907 TCGCTCCAGTGCTTGTAGTC 59.756 55.000 0.00 0.00 0.00 2.59
2697 2727 0.244994 CTCGCTCCAGTGCTTGTAGT 59.755 55.000 0.00 0.00 0.00 2.73
2698 2728 1.080995 GCTCGCTCCAGTGCTTGTAG 61.081 60.000 0.00 0.00 0.00 2.74
2699 2729 1.079819 GCTCGCTCCAGTGCTTGTA 60.080 57.895 0.00 0.00 0.00 2.41
2700 2730 2.358003 GCTCGCTCCAGTGCTTGT 60.358 61.111 0.00 0.00 0.00 3.16
2701 2731 3.123620 GGCTCGCTCCAGTGCTTG 61.124 66.667 0.00 0.00 0.00 4.01
2702 2732 4.749310 CGGCTCGCTCCAGTGCTT 62.749 66.667 0.00 0.00 0.00 3.91
2704 2734 4.742201 TTCGGCTCGCTCCAGTGC 62.742 66.667 0.00 0.00 0.00 4.40
2705 2735 2.507992 CTTCGGCTCGCTCCAGTG 60.508 66.667 0.00 0.00 0.00 3.66
2706 2736 3.764466 CCTTCGGCTCGCTCCAGT 61.764 66.667 0.00 0.00 0.00 4.00
2728 2758 4.530857 GAGGGGTGATGACGGCGG 62.531 72.222 13.24 0.00 0.00 6.13
2729 2759 4.530857 GGAGGGGTGATGACGGCG 62.531 72.222 4.80 4.80 0.00 6.46
2730 2760 2.666596 GATGGAGGGGTGATGACGGC 62.667 65.000 0.00 0.00 0.00 5.68
2731 2761 1.337384 TGATGGAGGGGTGATGACGG 61.337 60.000 0.00 0.00 0.00 4.79
2732 2762 0.179073 GTGATGGAGGGGTGATGACG 60.179 60.000 0.00 0.00 0.00 4.35
2733 2763 0.181350 GGTGATGGAGGGGTGATGAC 59.819 60.000 0.00 0.00 0.00 3.06
2734 2764 1.337384 CGGTGATGGAGGGGTGATGA 61.337 60.000 0.00 0.00 0.00 2.92
2735 2765 1.146930 CGGTGATGGAGGGGTGATG 59.853 63.158 0.00 0.00 0.00 3.07
2736 2766 2.072487 CCGGTGATGGAGGGGTGAT 61.072 63.158 0.00 0.00 0.00 3.06
2737 2767 2.687200 CCGGTGATGGAGGGGTGA 60.687 66.667 0.00 0.00 0.00 4.02
2738 2768 2.687200 TCCGGTGATGGAGGGGTG 60.687 66.667 0.00 0.00 33.05 4.61
2744 2774 2.966732 GCCCAACTCCGGTGATGGA 61.967 63.158 28.54 0.00 34.82 3.41
2745 2775 2.438434 GCCCAACTCCGGTGATGG 60.438 66.667 22.20 22.20 0.00 3.51
2746 2776 0.893270 TTTGCCCAACTCCGGTGATG 60.893 55.000 11.17 8.75 0.00 3.07
2747 2777 0.893727 GTTTGCCCAACTCCGGTGAT 60.894 55.000 11.17 0.00 31.92 3.06
2748 2778 1.527380 GTTTGCCCAACTCCGGTGA 60.527 57.895 11.17 0.00 31.92 4.02
2749 2779 2.561037 GGTTTGCCCAACTCCGGTG 61.561 63.158 0.00 0.00 35.46 4.94
2750 2780 2.203437 GGTTTGCCCAACTCCGGT 60.203 61.111 0.00 0.00 35.46 5.28
2751 2781 1.530655 AAGGTTTGCCCAACTCCGG 60.531 57.895 0.00 0.00 35.46 5.14
2752 2782 1.106944 ACAAGGTTTGCCCAACTCCG 61.107 55.000 0.00 0.00 35.46 4.63
2753 2783 1.119684 AACAAGGTTTGCCCAACTCC 58.880 50.000 0.00 0.00 35.46 3.85
2754 2784 4.765339 ACTATAACAAGGTTTGCCCAACTC 59.235 41.667 0.00 0.00 35.46 3.01
2755 2785 4.736473 ACTATAACAAGGTTTGCCCAACT 58.264 39.130 0.00 0.00 35.46 3.16
2756 2786 5.941647 TCTACTATAACAAGGTTTGCCCAAC 59.058 40.000 0.00 0.00 34.66 3.77
2757 2787 5.941647 GTCTACTATAACAAGGTTTGCCCAA 59.058 40.000 0.00 0.00 34.66 4.12
2758 2788 5.013287 TGTCTACTATAACAAGGTTTGCCCA 59.987 40.000 0.00 0.00 34.66 5.36
2759 2789 5.493809 TGTCTACTATAACAAGGTTTGCCC 58.506 41.667 0.00 0.00 34.57 5.36
2760 2790 6.171213 ACTGTCTACTATAACAAGGTTTGCC 58.829 40.000 0.00 0.00 0.00 4.52
2761 2791 6.034683 CGACTGTCTACTATAACAAGGTTTGC 59.965 42.308 6.21 0.00 0.00 3.68
2762 2792 6.530534 CCGACTGTCTACTATAACAAGGTTTG 59.469 42.308 6.21 0.00 0.00 2.93
2763 2793 6.350780 CCCGACTGTCTACTATAACAAGGTTT 60.351 42.308 6.21 0.00 0.00 3.27
2764 2794 5.126707 CCCGACTGTCTACTATAACAAGGTT 59.873 44.000 6.21 0.00 0.00 3.50
2765 2795 4.643784 CCCGACTGTCTACTATAACAAGGT 59.356 45.833 6.21 0.00 0.00 3.50
2766 2796 4.885907 TCCCGACTGTCTACTATAACAAGG 59.114 45.833 6.21 0.00 0.00 3.61
2767 2797 6.095160 ACTTCCCGACTGTCTACTATAACAAG 59.905 42.308 6.21 0.00 0.00 3.16
2768 2798 5.948162 ACTTCCCGACTGTCTACTATAACAA 59.052 40.000 6.21 0.00 0.00 2.83
2769 2799 5.503927 ACTTCCCGACTGTCTACTATAACA 58.496 41.667 6.21 0.00 0.00 2.41
2770 2800 5.277250 CGACTTCCCGACTGTCTACTATAAC 60.277 48.000 6.21 0.00 0.00 1.89
2771 2801 4.813161 CGACTTCCCGACTGTCTACTATAA 59.187 45.833 6.21 0.00 0.00 0.98
2772 2802 4.141846 ACGACTTCCCGACTGTCTACTATA 60.142 45.833 6.21 0.00 0.00 1.31
2773 2803 3.204526 CGACTTCCCGACTGTCTACTAT 58.795 50.000 6.21 0.00 0.00 2.12
2774 2804 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
2775 2805 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
2776 2806 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
2777 2807 1.271001 TGACGACTTCCCGACTGTCTA 60.271 52.381 6.21 0.00 0.00 2.59
2778 2808 0.536687 TGACGACTTCCCGACTGTCT 60.537 55.000 6.21 0.00 0.00 3.41
2779 2809 0.526662 ATGACGACTTCCCGACTGTC 59.473 55.000 0.00 0.00 0.00 3.51
2780 2810 0.243907 CATGACGACTTCCCGACTGT 59.756 55.000 0.00 0.00 0.00 3.55
2781 2811 1.078759 GCATGACGACTTCCCGACTG 61.079 60.000 0.00 0.00 0.00 3.51
2782 2812 1.215647 GCATGACGACTTCCCGACT 59.784 57.895 0.00 0.00 0.00 4.18
2783 2813 0.454600 TAGCATGACGACTTCCCGAC 59.545 55.000 0.00 0.00 0.00 4.79
2784 2814 1.134367 CTTAGCATGACGACTTCCCGA 59.866 52.381 0.00 0.00 0.00 5.14
2785 2815 1.560923 CTTAGCATGACGACTTCCCG 58.439 55.000 0.00 0.00 0.00 5.14
2786 2816 1.941325 CCTTAGCATGACGACTTCCC 58.059 55.000 0.00 0.00 0.00 3.97
2787 2817 1.291132 GCCTTAGCATGACGACTTCC 58.709 55.000 0.00 0.00 39.53 3.46
2788 2818 1.291132 GGCCTTAGCATGACGACTTC 58.709 55.000 0.00 0.00 42.56 3.01
2789 2819 0.107654 GGGCCTTAGCATGACGACTT 60.108 55.000 0.84 0.00 42.56 3.01
2790 2820 1.522569 GGGCCTTAGCATGACGACT 59.477 57.895 0.84 0.00 42.56 4.18
2791 2821 1.523938 GGGGCCTTAGCATGACGAC 60.524 63.158 0.84 0.00 42.56 4.34
2792 2822 1.558167 TTGGGGCCTTAGCATGACGA 61.558 55.000 0.84 0.00 42.56 4.20
2793 2823 0.679640 TTTGGGGCCTTAGCATGACG 60.680 55.000 0.84 0.00 42.56 4.35
2794 2824 1.106285 CTTTGGGGCCTTAGCATGAC 58.894 55.000 0.84 0.00 42.56 3.06
2795 2825 0.033208 CCTTTGGGGCCTTAGCATGA 60.033 55.000 0.84 0.00 42.56 3.07
2796 2826 0.033208 TCCTTTGGGGCCTTAGCATG 60.033 55.000 0.84 0.00 42.56 4.06
2797 2827 0.033109 GTCCTTTGGGGCCTTAGCAT 60.033 55.000 0.84 0.00 42.56 3.79
2798 2828 1.382629 GTCCTTTGGGGCCTTAGCA 59.617 57.895 0.84 0.00 42.56 3.49
2799 2829 4.338815 GTCCTTTGGGGCCTTAGC 57.661 61.111 0.84 0.00 38.76 3.09
2805 2835 2.361737 GAGCTGGTCCTTTGGGGC 60.362 66.667 0.00 0.00 36.26 5.80
2806 2836 1.303643 GTGAGCTGGTCCTTTGGGG 60.304 63.158 4.17 0.00 0.00 4.96
2807 2837 1.303643 GGTGAGCTGGTCCTTTGGG 60.304 63.158 4.17 0.00 0.00 4.12
2808 2838 0.607489 CTGGTGAGCTGGTCCTTTGG 60.607 60.000 4.17 0.00 0.00 3.28
2809 2839 0.397941 TCTGGTGAGCTGGTCCTTTG 59.602 55.000 4.17 0.00 0.00 2.77
2810 2840 0.689623 CTCTGGTGAGCTGGTCCTTT 59.310 55.000 4.17 0.00 33.12 3.11
2811 2841 2.370718 CTCTGGTGAGCTGGTCCTT 58.629 57.895 4.17 0.00 33.12 3.36
2812 2842 4.126908 CTCTGGTGAGCTGGTCCT 57.873 61.111 4.17 0.00 33.12 3.85
2820 2850 0.322277 ATGGTTGCTGCTCTGGTGAG 60.322 55.000 0.00 0.00 42.96 3.51
2821 2851 0.321919 GATGGTTGCTGCTCTGGTGA 60.322 55.000 0.00 0.00 0.00 4.02
2822 2852 1.642037 CGATGGTTGCTGCTCTGGTG 61.642 60.000 0.00 0.00 0.00 4.17
2823 2853 1.376424 CGATGGTTGCTGCTCTGGT 60.376 57.895 0.00 0.00 0.00 4.00
2824 2854 2.758089 GCGATGGTTGCTGCTCTGG 61.758 63.158 0.00 0.00 0.00 3.86
2825 2855 1.744368 AGCGATGGTTGCTGCTCTG 60.744 57.895 0.00 0.00 42.14 3.35
2826 2856 2.667418 AGCGATGGTTGCTGCTCT 59.333 55.556 0.00 0.00 42.14 4.09
2831 2861 1.065926 TCTTCATCAGCGATGGTTGCT 60.066 47.619 15.33 0.00 45.31 3.91
2832 2862 1.329906 CTCTTCATCAGCGATGGTTGC 59.670 52.381 15.33 0.00 40.15 4.17
2833 2863 2.864946 CTCTCTTCATCAGCGATGGTTG 59.135 50.000 15.33 0.00 40.15 3.77
2834 2864 2.499289 ACTCTCTTCATCAGCGATGGTT 59.501 45.455 15.33 0.00 40.15 3.67
2835 2865 2.106566 ACTCTCTTCATCAGCGATGGT 58.893 47.619 15.33 0.00 40.15 3.55
2836 2866 2.864946 CAACTCTCTTCATCAGCGATGG 59.135 50.000 15.33 4.42 40.15 3.51
2837 2867 3.519579 ACAACTCTCTTCATCAGCGATG 58.480 45.455 10.94 10.94 41.00 3.84
2838 2868 3.883830 ACAACTCTCTTCATCAGCGAT 57.116 42.857 0.00 0.00 0.00 4.58
2839 2869 4.010349 TCTACAACTCTCTTCATCAGCGA 58.990 43.478 0.00 0.00 0.00 4.93
2840 2870 4.362932 TCTACAACTCTCTTCATCAGCG 57.637 45.455 0.00 0.00 0.00 5.18
2841 2871 5.523188 CCAATCTACAACTCTCTTCATCAGC 59.477 44.000 0.00 0.00 0.00 4.26
2842 2872 6.871844 TCCAATCTACAACTCTCTTCATCAG 58.128 40.000 0.00 0.00 0.00 2.90
2843 2873 6.857437 TCCAATCTACAACTCTCTTCATCA 57.143 37.500 0.00 0.00 0.00 3.07
2844 2874 8.037758 TCTTTCCAATCTACAACTCTCTTCATC 58.962 37.037 0.00 0.00 0.00 2.92
2845 2875 7.911651 TCTTTCCAATCTACAACTCTCTTCAT 58.088 34.615 0.00 0.00 0.00 2.57
2846 2876 7.303182 TCTTTCCAATCTACAACTCTCTTCA 57.697 36.000 0.00 0.00 0.00 3.02
2847 2877 8.037758 TGATCTTTCCAATCTACAACTCTCTTC 58.962 37.037 0.00 0.00 0.00 2.87
2848 2878 7.911651 TGATCTTTCCAATCTACAACTCTCTT 58.088 34.615 0.00 0.00 0.00 2.85
2849 2879 7.487822 TGATCTTTCCAATCTACAACTCTCT 57.512 36.000 0.00 0.00 0.00 3.10
2850 2880 8.447053 GTTTGATCTTTCCAATCTACAACTCTC 58.553 37.037 0.00 0.00 0.00 3.20
2851 2881 7.391833 GGTTTGATCTTTCCAATCTACAACTCT 59.608 37.037 0.00 0.00 0.00 3.24
2852 2882 7.391833 AGGTTTGATCTTTCCAATCTACAACTC 59.608 37.037 0.00 0.00 0.00 3.01
2853 2883 7.175641 CAGGTTTGATCTTTCCAATCTACAACT 59.824 37.037 0.00 0.00 0.00 3.16
2854 2884 7.174946 TCAGGTTTGATCTTTCCAATCTACAAC 59.825 37.037 0.00 0.00 0.00 3.32
2855 2885 7.230747 TCAGGTTTGATCTTTCCAATCTACAA 58.769 34.615 0.00 0.00 0.00 2.41
2856 2886 6.778821 TCAGGTTTGATCTTTCCAATCTACA 58.221 36.000 0.00 0.00 0.00 2.74
2857 2887 7.687941 TTCAGGTTTGATCTTTCCAATCTAC 57.312 36.000 0.00 0.00 32.27 2.59
2858 2888 7.176690 GGTTTCAGGTTTGATCTTTCCAATCTA 59.823 37.037 0.00 0.00 32.27 1.98
2859 2889 6.015095 GGTTTCAGGTTTGATCTTTCCAATCT 60.015 38.462 0.00 0.00 32.27 2.40
2860 2890 6.159293 GGTTTCAGGTTTGATCTTTCCAATC 58.841 40.000 0.00 0.00 32.27 2.67
2861 2891 5.602145 TGGTTTCAGGTTTGATCTTTCCAAT 59.398 36.000 0.00 0.00 32.27 3.16
2862 2892 4.959210 TGGTTTCAGGTTTGATCTTTCCAA 59.041 37.500 0.00 0.00 32.27 3.53
2863 2893 4.340950 GTGGTTTCAGGTTTGATCTTTCCA 59.659 41.667 0.00 0.00 32.27 3.53
2864 2894 4.340950 TGTGGTTTCAGGTTTGATCTTTCC 59.659 41.667 0.00 0.00 32.27 3.13
2865 2895 5.281727 GTGTGGTTTCAGGTTTGATCTTTC 58.718 41.667 0.00 0.00 32.27 2.62
2866 2896 4.202010 CGTGTGGTTTCAGGTTTGATCTTT 60.202 41.667 0.00 0.00 32.27 2.52
2867 2897 3.315191 CGTGTGGTTTCAGGTTTGATCTT 59.685 43.478 0.00 0.00 32.27 2.40
2868 2898 2.878406 CGTGTGGTTTCAGGTTTGATCT 59.122 45.455 0.00 0.00 32.27 2.75
2869 2899 2.875933 TCGTGTGGTTTCAGGTTTGATC 59.124 45.455 0.00 0.00 32.27 2.92
2870 2900 2.925724 TCGTGTGGTTTCAGGTTTGAT 58.074 42.857 0.00 0.00 32.27 2.57
2871 2901 2.404923 TCGTGTGGTTTCAGGTTTGA 57.595 45.000 0.00 0.00 0.00 2.69
2872 2902 2.789779 CGTTCGTGTGGTTTCAGGTTTG 60.790 50.000 0.00 0.00 0.00 2.93
2873 2903 1.399089 CGTTCGTGTGGTTTCAGGTTT 59.601 47.619 0.00 0.00 0.00 3.27
2874 2904 1.011333 CGTTCGTGTGGTTTCAGGTT 58.989 50.000 0.00 0.00 0.00 3.50
2875 2905 0.176219 TCGTTCGTGTGGTTTCAGGT 59.824 50.000 0.00 0.00 0.00 4.00
2876 2906 1.260561 CTTCGTTCGTGTGGTTTCAGG 59.739 52.381 0.00 0.00 0.00 3.86
2877 2907 2.034001 GTCTTCGTTCGTGTGGTTTCAG 60.034 50.000 0.00 0.00 0.00 3.02
2878 2908 1.928503 GTCTTCGTTCGTGTGGTTTCA 59.071 47.619 0.00 0.00 0.00 2.69
2879 2909 1.071698 CGTCTTCGTTCGTGTGGTTTC 60.072 52.381 0.00 0.00 0.00 2.78
2880 2910 0.925466 CGTCTTCGTTCGTGTGGTTT 59.075 50.000 0.00 0.00 0.00 3.27
2881 2911 0.101040 TCGTCTTCGTTCGTGTGGTT 59.899 50.000 0.00 0.00 38.33 3.67
2882 2912 0.101040 TTCGTCTTCGTTCGTGTGGT 59.899 50.000 0.00 0.00 38.33 4.16
2883 2913 0.501435 GTTCGTCTTCGTTCGTGTGG 59.499 55.000 0.00 0.00 38.33 4.17
2884 2914 1.193644 TGTTCGTCTTCGTTCGTGTG 58.806 50.000 0.00 0.00 38.33 3.82
2885 2915 1.912001 TTGTTCGTCTTCGTTCGTGT 58.088 45.000 0.00 0.00 38.33 4.49
2886 2916 2.982919 TTTGTTCGTCTTCGTTCGTG 57.017 45.000 0.00 0.00 38.33 4.35
2887 2917 2.925563 AGTTTTGTTCGTCTTCGTTCGT 59.074 40.909 0.00 0.00 38.33 3.85
2888 2918 3.564408 AGTTTTGTTCGTCTTCGTTCG 57.436 42.857 0.00 0.00 38.33 3.95
2889 2919 4.084693 CCCTAGTTTTGTTCGTCTTCGTTC 60.085 45.833 0.00 0.00 38.33 3.95
2890 2920 3.805971 CCCTAGTTTTGTTCGTCTTCGTT 59.194 43.478 0.00 0.00 38.33 3.85
2891 2921 3.387397 CCCTAGTTTTGTTCGTCTTCGT 58.613 45.455 0.00 0.00 38.33 3.85
2892 2922 2.157085 GCCCTAGTTTTGTTCGTCTTCG 59.843 50.000 0.00 0.00 38.55 3.79
2893 2923 3.400255 AGCCCTAGTTTTGTTCGTCTTC 58.600 45.455 0.00 0.00 0.00 2.87
2894 2924 3.487120 AGCCCTAGTTTTGTTCGTCTT 57.513 42.857 0.00 0.00 0.00 3.01
2895 2925 3.181458 TGAAGCCCTAGTTTTGTTCGTCT 60.181 43.478 0.00 0.00 0.00 4.18
2896 2926 3.059120 GTGAAGCCCTAGTTTTGTTCGTC 60.059 47.826 0.00 0.00 0.00 4.20
2897 2927 2.876550 GTGAAGCCCTAGTTTTGTTCGT 59.123 45.455 0.00 0.00 0.00 3.85
2898 2928 2.875933 TGTGAAGCCCTAGTTTTGTTCG 59.124 45.455 0.00 0.00 0.00 3.95
2899 2929 4.338400 ACTTGTGAAGCCCTAGTTTTGTTC 59.662 41.667 0.00 0.00 0.00 3.18
2900 2930 4.278310 ACTTGTGAAGCCCTAGTTTTGTT 58.722 39.130 0.00 0.00 0.00 2.83
2901 2931 3.883489 GACTTGTGAAGCCCTAGTTTTGT 59.117 43.478 0.00 0.00 0.00 2.83
2902 2932 3.058914 CGACTTGTGAAGCCCTAGTTTTG 60.059 47.826 0.00 0.00 0.00 2.44
2903 2933 3.139077 CGACTTGTGAAGCCCTAGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
2904 2934 2.367567 TCGACTTGTGAAGCCCTAGTTT 59.632 45.455 0.00 0.00 0.00 2.66
2905 2935 1.968493 TCGACTTGTGAAGCCCTAGTT 59.032 47.619 0.00 0.00 0.00 2.24
2906 2936 1.629043 TCGACTTGTGAAGCCCTAGT 58.371 50.000 0.00 0.00 0.00 2.57
2907 2937 2.969628 ATCGACTTGTGAAGCCCTAG 57.030 50.000 0.00 0.00 0.00 3.02
2908 2938 3.596214 GAAATCGACTTGTGAAGCCCTA 58.404 45.455 0.00 0.00 0.00 3.53
2909 2939 2.427506 GAAATCGACTTGTGAAGCCCT 58.572 47.619 0.00 0.00 0.00 5.19
2910 2940 1.468914 GGAAATCGACTTGTGAAGCCC 59.531 52.381 0.00 0.00 0.00 5.19
2911 2941 1.468914 GGGAAATCGACTTGTGAAGCC 59.531 52.381 0.00 0.00 0.00 4.35
2912 2942 2.427506 AGGGAAATCGACTTGTGAAGC 58.572 47.619 0.00 0.00 0.00 3.86
2913 2943 4.184629 CCTAGGGAAATCGACTTGTGAAG 58.815 47.826 0.00 0.00 0.00 3.02
2914 2944 3.055385 CCCTAGGGAAATCGACTTGTGAA 60.055 47.826 24.99 0.00 37.50 3.18
2915 2945 2.500098 CCCTAGGGAAATCGACTTGTGA 59.500 50.000 24.99 0.00 37.50 3.58
2916 2946 2.236395 ACCCTAGGGAAATCGACTTGTG 59.764 50.000 35.38 2.34 38.96 3.33
2917 2947 2.547990 ACCCTAGGGAAATCGACTTGT 58.452 47.619 35.38 3.78 38.96 3.16
2918 2948 3.629142 AACCCTAGGGAAATCGACTTG 57.371 47.619 35.38 3.05 38.96 3.16
2919 2949 3.844804 AGAAACCCTAGGGAAATCGACTT 59.155 43.478 35.38 12.60 38.96 3.01
2920 2950 3.197983 CAGAAACCCTAGGGAAATCGACT 59.802 47.826 35.38 18.06 38.96 4.18
2921 2951 3.532542 CAGAAACCCTAGGGAAATCGAC 58.467 50.000 35.38 16.27 38.96 4.20
2922 2952 2.504175 CCAGAAACCCTAGGGAAATCGA 59.496 50.000 35.38 0.00 38.96 3.59
2923 2953 2.421529 CCCAGAAACCCTAGGGAAATCG 60.422 54.545 35.38 18.03 44.30 3.34
2924 2954 2.850568 TCCCAGAAACCCTAGGGAAATC 59.149 50.000 35.38 25.35 46.94 2.17
2925 2955 2.942905 TCCCAGAAACCCTAGGGAAAT 58.057 47.619 35.38 18.91 46.94 2.17
2926 2956 2.444033 TCCCAGAAACCCTAGGGAAA 57.556 50.000 35.38 6.93 46.94 3.13
2929 2959 1.923148 ACAATCCCAGAAACCCTAGGG 59.077 52.381 27.36 27.36 42.86 3.53
2930 2960 4.855298 TTACAATCCCAGAAACCCTAGG 57.145 45.455 0.06 0.06 0.00 3.02
2931 2961 5.816682 ACTTTACAATCCCAGAAACCCTAG 58.183 41.667 0.00 0.00 0.00 3.02
2932 2962 5.853572 ACTTTACAATCCCAGAAACCCTA 57.146 39.130 0.00 0.00 0.00 3.53
2933 2963 4.741928 ACTTTACAATCCCAGAAACCCT 57.258 40.909 0.00 0.00 0.00 4.34
2934 2964 7.476540 AAATACTTTACAATCCCAGAAACCC 57.523 36.000 0.00 0.00 0.00 4.11
2942 2972 9.503399 CCACCTCTATAAATACTTTACAATCCC 57.497 37.037 0.00 0.00 0.00 3.85
2950 2980 9.503369 ACCTACTTCCACCTCTATAAATACTTT 57.497 33.333 0.00 0.00 0.00 2.66
2951 2981 9.145442 GACCTACTTCCACCTCTATAAATACTT 57.855 37.037 0.00 0.00 0.00 2.24
2952 2982 8.287350 TGACCTACTTCCACCTCTATAAATACT 58.713 37.037 0.00 0.00 0.00 2.12
2953 2983 8.474710 TGACCTACTTCCACCTCTATAAATAC 57.525 38.462 0.00 0.00 0.00 1.89
2954 2984 9.144298 CTTGACCTACTTCCACCTCTATAAATA 57.856 37.037 0.00 0.00 0.00 1.40
2955 2985 7.071321 CCTTGACCTACTTCCACCTCTATAAAT 59.929 40.741 0.00 0.00 0.00 1.40
2956 2986 6.383147 CCTTGACCTACTTCCACCTCTATAAA 59.617 42.308 0.00 0.00 0.00 1.40
2957 2987 5.897824 CCTTGACCTACTTCCACCTCTATAA 59.102 44.000 0.00 0.00 0.00 0.98
2958 2988 5.455872 CCTTGACCTACTTCCACCTCTATA 58.544 45.833 0.00 0.00 0.00 1.31
2959 2989 4.290942 CCTTGACCTACTTCCACCTCTAT 58.709 47.826 0.00 0.00 0.00 1.98
2960 2990 3.565890 CCCTTGACCTACTTCCACCTCTA 60.566 52.174 0.00 0.00 0.00 2.43
2961 2991 2.541466 CCTTGACCTACTTCCACCTCT 58.459 52.381 0.00 0.00 0.00 3.69
2962 2992 1.555533 CCCTTGACCTACTTCCACCTC 59.444 57.143 0.00 0.00 0.00 3.85
2963 2993 1.657804 CCCTTGACCTACTTCCACCT 58.342 55.000 0.00 0.00 0.00 4.00
2964 2994 0.618981 CCCCTTGACCTACTTCCACC 59.381 60.000 0.00 0.00 0.00 4.61
2965 2995 0.618981 CCCCCTTGACCTACTTCCAC 59.381 60.000 0.00 0.00 0.00 4.02
2966 2996 3.098445 CCCCCTTGACCTACTTCCA 57.902 57.895 0.00 0.00 0.00 3.53
2983 3013 4.340246 GTGGAACCCACGGGACCC 62.340 72.222 9.72 9.65 44.95 4.46
2994 3024 4.174305 CCTGGTGGGTTGTGGAAC 57.826 61.111 0.00 0.00 37.35 3.62
3005 3035 4.742201 CTCCGGCGACACCTGGTG 62.742 72.222 24.80 24.80 39.75 4.17
3017 3047 4.135153 CGTGTCAGAGGCCTCCGG 62.135 72.222 29.54 21.36 0.00 5.14
3018 3048 4.803426 GCGTGTCAGAGGCCTCCG 62.803 72.222 29.54 24.21 0.00 4.63
3023 3053 2.743928 CAAGGGCGTGTCAGAGGC 60.744 66.667 0.00 0.00 34.52 4.70
3024 3054 1.669115 CACAAGGGCGTGTCAGAGG 60.669 63.158 0.00 0.00 32.00 3.69
3025 3055 2.320587 GCACAAGGGCGTGTCAGAG 61.321 63.158 0.00 0.00 39.19 3.35
3026 3056 2.280797 GCACAAGGGCGTGTCAGA 60.281 61.111 0.00 0.00 39.19 3.27
3027 3057 2.449031 TAGGCACAAGGGCGTGTCAG 62.449 60.000 0.00 0.00 44.10 3.51
3028 3058 2.449031 CTAGGCACAAGGGCGTGTCA 62.449 60.000 0.00 0.00 44.10 3.58
3034 3064 2.044946 CCCACTAGGCACAAGGGC 60.045 66.667 0.00 0.00 43.80 5.19
3052 3082 4.227134 CGAGATGAGGCCCGTGGG 62.227 72.222 0.00 0.00 38.57 4.61
3053 3083 3.461773 ACGAGATGAGGCCCGTGG 61.462 66.667 0.00 0.00 33.69 4.94
3054 3084 2.202797 CACGAGATGAGGCCCGTG 60.203 66.667 14.15 14.15 44.66 4.94
3055 3085 2.680352 ACACGAGATGAGGCCCGT 60.680 61.111 0.00 0.00 35.46 5.28
3056 3086 2.202797 CACACGAGATGAGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
3057 3087 2.512515 GCACACGAGATGAGGCCC 60.513 66.667 0.00 0.00 0.00 5.80
3058 3088 1.520342 GAGCACACGAGATGAGGCC 60.520 63.158 0.00 0.00 34.16 5.19
3059 3089 1.520342 GGAGCACACGAGATGAGGC 60.520 63.158 0.00 0.00 33.95 4.70
3060 3090 0.179116 CTGGAGCACACGAGATGAGG 60.179 60.000 0.00 0.00 0.00 3.86
3061 3091 0.813821 TCTGGAGCACACGAGATGAG 59.186 55.000 0.00 0.00 0.00 2.90
3062 3092 1.203287 CTTCTGGAGCACACGAGATGA 59.797 52.381 0.00 0.00 0.00 2.92
3063 3093 1.638133 CTTCTGGAGCACACGAGATG 58.362 55.000 0.00 0.00 0.00 2.90
3074 3104 1.407989 GGACCATGGAAGCTTCTGGAG 60.408 57.143 31.16 18.88 32.92 3.86
3075 3105 0.620556 GGACCATGGAAGCTTCTGGA 59.379 55.000 31.16 16.00 32.92 3.86
3076 3106 0.329261 TGGACCATGGAAGCTTCTGG 59.671 55.000 25.62 25.62 34.84 3.86
3077 3107 2.431954 ATGGACCATGGAAGCTTCTG 57.568 50.000 25.05 16.31 0.00 3.02
3078 3108 4.166725 TGATAATGGACCATGGAAGCTTCT 59.833 41.667 25.05 5.60 0.00 2.85
3079 3109 4.276926 GTGATAATGGACCATGGAAGCTTC 59.723 45.833 21.47 18.54 0.00 3.86
3080 3110 4.210331 GTGATAATGGACCATGGAAGCTT 58.790 43.478 21.47 0.00 0.00 3.74
3081 3111 3.435601 GGTGATAATGGACCATGGAAGCT 60.436 47.826 21.47 0.00 31.97 3.74
3082 3112 2.887152 GGTGATAATGGACCATGGAAGC 59.113 50.000 21.47 7.12 31.97 3.86
3083 3113 3.885297 GTGGTGATAATGGACCATGGAAG 59.115 47.826 21.47 0.00 44.08 3.46
3084 3114 3.268072 TGTGGTGATAATGGACCATGGAA 59.732 43.478 21.47 3.61 44.08 3.53
3085 3115 2.849318 TGTGGTGATAATGGACCATGGA 59.151 45.455 21.47 0.00 44.08 3.41
3086 3116 3.295585 TGTGGTGATAATGGACCATGG 57.704 47.619 11.19 11.19 44.08 3.66
3087 3117 5.657826 TTTTGTGGTGATAATGGACCATG 57.342 39.130 8.02 0.00 44.08 3.66
3118 3148 6.816134 AGTTCAATTGCCACAAAACTTTTT 57.184 29.167 0.00 0.00 0.00 1.94
3119 3149 6.816134 AAGTTCAATTGCCACAAAACTTTT 57.184 29.167 12.47 0.00 34.28 2.27
3120 3150 6.206438 ACAAAGTTCAATTGCCACAAAACTTT 59.794 30.769 19.71 19.71 43.77 2.66
3121 3151 5.704978 ACAAAGTTCAATTGCCACAAAACTT 59.295 32.000 12.47 12.47 38.27 2.66
3122 3152 5.244755 ACAAAGTTCAATTGCCACAAAACT 58.755 33.333 0.00 1.32 0.00 2.66
3123 3153 5.544136 ACAAAGTTCAATTGCCACAAAAC 57.456 34.783 0.00 0.00 0.00 2.43
3124 3154 6.205464 TCAAACAAAGTTCAATTGCCACAAAA 59.795 30.769 0.00 0.00 0.00 2.44
3125 3155 5.702670 TCAAACAAAGTTCAATTGCCACAAA 59.297 32.000 0.00 0.00 0.00 2.83
3126 3156 5.240891 TCAAACAAAGTTCAATTGCCACAA 58.759 33.333 0.00 0.00 0.00 3.33
3127 3157 4.825422 TCAAACAAAGTTCAATTGCCACA 58.175 34.783 0.00 0.00 0.00 4.17
3128 3158 5.754890 AGATCAAACAAAGTTCAATTGCCAC 59.245 36.000 0.00 0.00 0.00 5.01
3129 3159 5.916318 AGATCAAACAAAGTTCAATTGCCA 58.084 33.333 0.00 0.00 0.00 4.92
3130 3160 6.479660 TCAAGATCAAACAAAGTTCAATTGCC 59.520 34.615 0.00 0.00 0.00 4.52
3131 3161 7.467557 TCAAGATCAAACAAAGTTCAATTGC 57.532 32.000 0.00 0.00 0.00 3.56
3137 3167 9.565213 CCAGAATATCAAGATCAAACAAAGTTC 57.435 33.333 0.00 0.00 0.00 3.01
3138 3168 9.300681 TCCAGAATATCAAGATCAAACAAAGTT 57.699 29.630 0.00 0.00 0.00 2.66
3139 3169 8.868522 TCCAGAATATCAAGATCAAACAAAGT 57.131 30.769 0.00 0.00 0.00 2.66
3142 3172 9.912634 GTTTTCCAGAATATCAAGATCAAACAA 57.087 29.630 0.00 0.00 0.00 2.83
3143 3173 9.076781 TGTTTTCCAGAATATCAAGATCAAACA 57.923 29.630 0.00 0.00 0.00 2.83
3144 3174 9.912634 TTGTTTTCCAGAATATCAAGATCAAAC 57.087 29.630 0.00 0.00 0.00 2.93
3170 3200 1.134729 CCAGTGCCAGTTGCTGTTTTT 60.135 47.619 0.00 0.00 42.00 1.94
3171 3201 0.461135 CCAGTGCCAGTTGCTGTTTT 59.539 50.000 0.00 0.00 42.00 2.43
3172 3202 1.394266 CCCAGTGCCAGTTGCTGTTT 61.394 55.000 0.00 0.00 42.00 2.83
3173 3203 1.829533 CCCAGTGCCAGTTGCTGTT 60.830 57.895 0.00 0.00 42.00 3.16
3174 3204 2.203394 CCCAGTGCCAGTTGCTGT 60.203 61.111 0.00 0.00 42.00 4.40
3175 3205 3.677648 GCCCAGTGCCAGTTGCTG 61.678 66.667 0.00 0.00 42.00 4.41
3176 3206 4.208403 TGCCCAGTGCCAGTTGCT 62.208 61.111 0.00 0.00 42.00 3.91
3177 3207 3.982241 GTGCCCAGTGCCAGTTGC 61.982 66.667 0.00 0.00 40.16 4.17
3178 3208 0.957395 CTAGTGCCCAGTGCCAGTTG 60.957 60.000 0.00 0.00 40.16 3.16
3179 3209 1.376466 CTAGTGCCCAGTGCCAGTT 59.624 57.895 0.00 0.00 40.16 3.16
3180 3210 3.072476 CTAGTGCCCAGTGCCAGT 58.928 61.111 0.00 0.00 40.16 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.