Multiple sequence alignment - TraesCS1D01G008100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G008100 chr1D 100.000 3284 0 0 1 3284 4083357 4080074 0.000000e+00 6065
1 TraesCS1D01G008100 chr2A 92.877 2134 127 13 369 2484 11482427 11484553 0.000000e+00 3075
2 TraesCS1D01G008100 chr2A 92.232 2021 117 21 468 2484 740532866 740534850 0.000000e+00 2826
3 TraesCS1D01G008100 chr2A 94.405 1680 85 4 809 2484 749599311 749597637 0.000000e+00 2573
4 TraesCS1D01G008100 chr2A 94.221 796 37 4 2495 3284 549135043 549134251 0.000000e+00 1206
5 TraesCS1D01G008100 chr2A 89.071 366 39 1 447 811 749605514 749605149 1.390000e-123 453
6 TraesCS1D01G008100 chr2A 88.963 299 30 3 76 372 485198742 485199039 1.860000e-97 366
7 TraesCS1D01G008100 chr5A 93.577 2055 121 6 434 2484 33142940 33144987 0.000000e+00 3053
8 TraesCS1D01G008100 chr5A 88.840 457 48 1 418 871 171942947 171942491 2.860000e-155 558
9 TraesCS1D01G008100 chr5A 80.000 260 30 7 1 239 305424729 305424987 4.360000e-39 172
10 TraesCS1D01G008100 chr7A 92.455 2134 136 13 369 2484 71697593 71699719 0.000000e+00 3025
11 TraesCS1D01G008100 chr7A 92.575 2074 127 11 418 2484 118992039 118989986 0.000000e+00 2952
12 TraesCS1D01G008100 chr7A 92.189 2074 130 8 418 2484 655222776 655224824 0.000000e+00 2904
13 TraesCS1D01G008100 chr7A 83.291 395 43 7 1 372 118992561 118992167 3.140000e-90 342
14 TraesCS1D01G008100 chr7A 87.417 302 30 6 76 370 682821720 682821420 1.130000e-89 340
15 TraesCS1D01G008100 chr1A 93.517 1774 106 4 715 2484 37103864 37102096 0.000000e+00 2630
16 TraesCS1D01G008100 chr1A 93.719 796 37 4 2495 3284 379187377 379186589 0.000000e+00 1181
17 TraesCS1D01G008100 chr6D 82.629 1894 167 80 732 2487 471908430 471906561 0.000000e+00 1526
18 TraesCS1D01G008100 chr5B 95.182 768 26 2 2495 3257 311208567 311207806 0.000000e+00 1203
19 TraesCS1D01G008100 chr4B 93.064 793 49 2 2495 3282 635657665 635658456 0.000000e+00 1155
20 TraesCS1D01G008100 chr4B 91.834 796 57 4 2495 3284 153308149 153308942 0.000000e+00 1103
21 TraesCS1D01G008100 chr4B 90.898 835 52 11 1670 2484 635656445 635657275 0.000000e+00 1099
22 TraesCS1D01G008100 chr1B 92.947 794 50 4 2496 3284 126519932 126520724 0.000000e+00 1151
23 TraesCS1D01G008100 chr1B 92.579 795 51 3 2495 3284 182653918 182654709 0.000000e+00 1134
24 TraesCS1D01G008100 chr4D 93.014 773 49 1 2495 3262 258681340 258680568 0.000000e+00 1123
25 TraesCS1D01G008100 chr4D 91.312 564 39 6 1670 2225 195847911 195848472 0.000000e+00 761
26 TraesCS1D01G008100 chr4D 89.824 511 42 7 409 910 271100390 271100899 0.000000e+00 647
27 TraesCS1D01G008100 chr7B 92.405 790 52 3 2496 3280 749143901 749144687 0.000000e+00 1120
28 TraesCS1D01G008100 chr7B 80.682 264 28 8 1 241 597760653 597760916 2.010000e-42 183
29 TraesCS1D01G008100 chr3B 87.374 396 26 6 1 372 777050742 777051137 1.810000e-117 433
30 TraesCS1D01G008100 chr3B 90.667 300 25 3 76 372 639828559 639828260 2.370000e-106 396
31 TraesCS1D01G008100 chr3B 80.075 266 30 9 1 244 740564670 740564406 3.370000e-40 176
32 TraesCS1D01G008100 chr6B 90.635 299 26 2 76 372 557843293 557843591 2.370000e-106 396
33 TraesCS1D01G008100 chr6B 79.323 266 30 11 1 241 77025344 77025609 2.620000e-36 163
34 TraesCS1D01G008100 chr2B 90.635 299 23 5 76 370 219706301 219706598 3.070000e-105 392
35 TraesCS1D01G008100 chr6A 89.899 297 27 3 76 370 426864076 426863781 2.390000e-101 379
36 TraesCS1D01G008100 chr5D 87.333 300 34 4 76 372 471428915 471428617 1.130000e-89 340
37 TraesCS1D01G008100 chr5D 78.545 275 37 8 1 253 397485242 397484968 9.430000e-36 161
38 TraesCS1D01G008100 chr4A 79.771 262 27 9 8 244 698477439 698477179 2.030000e-37 167
39 TraesCS1D01G008100 chr4A 78.652 267 32 8 2 244 698476789 698476524 1.580000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G008100 chr1D 4080074 4083357 3283 True 6065 6065 100.000 1 3284 1 chr1D.!!$R1 3283
1 TraesCS1D01G008100 chr2A 11482427 11484553 2126 False 3075 3075 92.877 369 2484 1 chr2A.!!$F1 2115
2 TraesCS1D01G008100 chr2A 740532866 740534850 1984 False 2826 2826 92.232 468 2484 1 chr2A.!!$F3 2016
3 TraesCS1D01G008100 chr2A 749597637 749599311 1674 True 2573 2573 94.405 809 2484 1 chr2A.!!$R2 1675
4 TraesCS1D01G008100 chr2A 549134251 549135043 792 True 1206 1206 94.221 2495 3284 1 chr2A.!!$R1 789
5 TraesCS1D01G008100 chr5A 33142940 33144987 2047 False 3053 3053 93.577 434 2484 1 chr5A.!!$F1 2050
6 TraesCS1D01G008100 chr7A 71697593 71699719 2126 False 3025 3025 92.455 369 2484 1 chr7A.!!$F1 2115
7 TraesCS1D01G008100 chr7A 655222776 655224824 2048 False 2904 2904 92.189 418 2484 1 chr7A.!!$F2 2066
8 TraesCS1D01G008100 chr7A 118989986 118992561 2575 True 1647 2952 87.933 1 2484 2 chr7A.!!$R2 2483
9 TraesCS1D01G008100 chr1A 37102096 37103864 1768 True 2630 2630 93.517 715 2484 1 chr1A.!!$R1 1769
10 TraesCS1D01G008100 chr1A 379186589 379187377 788 True 1181 1181 93.719 2495 3284 1 chr1A.!!$R2 789
11 TraesCS1D01G008100 chr6D 471906561 471908430 1869 True 1526 1526 82.629 732 2487 1 chr6D.!!$R1 1755
12 TraesCS1D01G008100 chr5B 311207806 311208567 761 True 1203 1203 95.182 2495 3257 1 chr5B.!!$R1 762
13 TraesCS1D01G008100 chr4B 635656445 635658456 2011 False 1127 1155 91.981 1670 3282 2 chr4B.!!$F2 1612
14 TraesCS1D01G008100 chr4B 153308149 153308942 793 False 1103 1103 91.834 2495 3284 1 chr4B.!!$F1 789
15 TraesCS1D01G008100 chr1B 126519932 126520724 792 False 1151 1151 92.947 2496 3284 1 chr1B.!!$F1 788
16 TraesCS1D01G008100 chr1B 182653918 182654709 791 False 1134 1134 92.579 2495 3284 1 chr1B.!!$F2 789
17 TraesCS1D01G008100 chr4D 258680568 258681340 772 True 1123 1123 93.014 2495 3262 1 chr4D.!!$R1 767
18 TraesCS1D01G008100 chr4D 195847911 195848472 561 False 761 761 91.312 1670 2225 1 chr4D.!!$F1 555
19 TraesCS1D01G008100 chr4D 271100390 271100899 509 False 647 647 89.824 409 910 1 chr4D.!!$F2 501
20 TraesCS1D01G008100 chr7B 749143901 749144687 786 False 1120 1120 92.405 2496 3280 1 chr7B.!!$F2 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 684 0.323629 CAAGCACCCGAAACCCTAGA 59.676 55.000 0.0 0.0 0.0 2.43 F
1284 1427 1.490490 TGATGGCTCCTGTTATCCACC 59.510 52.381 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1731 0.893270 ATACAAAGCAGCCACCGCAA 60.893 50.0 0.0 0.0 37.52 4.85 R
2911 3548 0.685097 GCAGGGTACACAGAGACCAA 59.315 55.0 0.0 0.0 37.47 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.239402 TCATGACCAAGCTATGAGGCAA 59.761 45.455 0.00 0.00 34.17 4.52
72 73 2.875933 CAGTTCAAACTTGACCCGCTTA 59.124 45.455 0.00 0.00 37.08 3.09
85 105 3.751518 ACCCGCTTACAGTCTTTTTCAT 58.248 40.909 0.00 0.00 0.00 2.57
94 114 5.296151 ACAGTCTTTTTCATGAGAGGTGA 57.704 39.130 0.00 0.00 0.00 4.02
102 122 8.137437 TCTTTTTCATGAGAGGTGAATCAAAAC 58.863 33.333 0.00 0.00 35.68 2.43
103 123 7.587037 TTTTCATGAGAGGTGAATCAAAACT 57.413 32.000 0.00 0.00 35.68 2.66
107 127 8.690203 TCATGAGAGGTGAATCAAAACTTTTA 57.310 30.769 0.00 0.00 0.00 1.52
111 131 8.912988 TGAGAGGTGAATCAAAACTTTTAACAT 58.087 29.630 0.00 0.00 0.00 2.71
113 133 8.912988 AGAGGTGAATCAAAACTTTTAACATCA 58.087 29.630 0.00 0.00 0.00 3.07
115 135 9.313118 AGGTGAATCAAAACTTTTAACATCAAC 57.687 29.630 0.00 0.00 0.00 3.18
116 136 9.313118 GGTGAATCAAAACTTTTAACATCAACT 57.687 29.630 0.00 0.00 0.00 3.16
245 268 7.864686 AGCACTTGAAAAATGGAAAATAAAGC 58.135 30.769 0.00 0.00 0.00 3.51
264 287 4.803098 AGCTTTAGTCAACTACGACCAT 57.197 40.909 0.00 0.00 36.52 3.55
309 333 3.459232 AGATGGTCATGACATGGTACG 57.541 47.619 26.47 0.00 0.00 3.67
339 363 2.166829 CATTTTGATTGGTCCGTGGGA 58.833 47.619 0.00 0.00 0.00 4.37
347 371 1.338890 TGGTCCGTGGGAGTTTCACA 61.339 55.000 0.00 0.00 35.03 3.58
387 482 1.262950 CGTCGTCTGCACATTTTCCAA 59.737 47.619 0.00 0.00 0.00 3.53
390 485 1.335872 CGTCTGCACATTTTCCAACCC 60.336 52.381 0.00 0.00 0.00 4.11
520 629 1.455959 CACCCTCTCCTCTACCCCG 60.456 68.421 0.00 0.00 0.00 5.73
575 684 0.323629 CAAGCACCCGAAACCCTAGA 59.676 55.000 0.00 0.00 0.00 2.43
730 840 2.665185 GCGCCCGACAAAGTCTGT 60.665 61.111 0.00 0.00 42.61 3.41
933 1053 2.126618 CGGTTACTCGCGCACTCA 60.127 61.111 8.75 0.00 0.00 3.41
1038 1164 2.811317 CGCTGCGTGGAGGAGAAC 60.811 66.667 14.93 0.00 41.23 3.01
1284 1427 1.490490 TGATGGCTCCTGTTATCCACC 59.510 52.381 0.00 0.00 0.00 4.61
1289 1432 2.421529 GGCTCCTGTTATCCACCGATTT 60.422 50.000 0.00 0.00 0.00 2.17
1338 1487 2.703416 CTCTTGTGTGCTCTGCCATTA 58.297 47.619 0.00 0.00 0.00 1.90
1511 1666 3.156293 TCAGGTGATTTGGTGTTGGATG 58.844 45.455 0.00 0.00 0.00 3.51
1576 1731 6.364568 TTGCATGATACTCCTGTATGCTAT 57.635 37.500 0.00 0.00 39.29 2.97
1614 1772 8.786826 TTTGTATAATTACTAGTGCAGTGCTT 57.213 30.769 17.60 7.30 38.24 3.91
1847 2029 6.610741 ATGAAGTCTTGACAGTTTGAAGTC 57.389 37.500 3.49 0.00 35.37 3.01
2034 2232 8.946085 CCATAAAAGCTCAAGTGTTTACTGATA 58.054 33.333 0.00 0.00 37.19 2.15
2460 2709 1.303309 CTGTTGGTAGCTGCCTATGC 58.697 55.000 22.25 9.53 38.26 3.14
2689 3324 6.239217 ACCTATGCATATGACTGTGAAAGA 57.761 37.500 14.99 0.00 0.00 2.52
2757 3392 8.997621 AGATATATACGTGTTGACTGTTTGTT 57.002 30.769 0.00 0.00 0.00 2.83
2911 3548 1.379576 GCCCATGCCTTGCTTCTCT 60.380 57.895 0.00 0.00 0.00 3.10
2931 3568 0.178932 TGGTCTCTGTGTACCCTGCT 60.179 55.000 0.00 0.00 34.69 4.24
2971 3610 9.719355 TTTGTGATTTGTTCTAGCAAGTATCTA 57.281 29.630 0.00 0.00 0.00 1.98
3041 3680 9.066892 ACTTGTTCTAGCATGTTTATTTCAAGA 57.933 29.630 16.63 0.00 33.88 3.02
3123 3762 4.219507 TGCAAACTTCAGTTTTCTCACCAA 59.780 37.500 2.01 0.00 45.07 3.67
3154 3793 4.719026 ATCCTGCTGTTCATGTCCATAT 57.281 40.909 0.00 0.00 0.00 1.78
3184 3823 7.843490 TTGTATTGGTTCTATGTTACAGCTC 57.157 36.000 0.00 0.00 0.00 4.09
3223 3862 1.915489 TGTGGGATGTGGCTCTATGTT 59.085 47.619 0.00 0.00 0.00 2.71
3265 3909 2.591072 CCTCTGCCTCTGGTGTGCT 61.591 63.158 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.336945 TGCCTCATAGCTTGGTCATG 57.663 50.000 0.00 0.00 0.00 3.07
29 30 1.630369 AGTTGCCTCATAGCTTGGTCA 59.370 47.619 0.00 0.00 0.00 4.02
30 31 2.012673 CAGTTGCCTCATAGCTTGGTC 58.987 52.381 0.00 0.00 0.00 4.02
32 33 0.737219 GCAGTTGCCTCATAGCTTGG 59.263 55.000 0.00 0.00 34.31 3.61
36 37 1.399791 GAACTGCAGTTGCCTCATAGC 59.600 52.381 35.67 14.50 38.56 2.97
47 48 2.024414 GGGTCAAGTTTGAACTGCAGT 58.976 47.619 15.25 15.25 44.25 4.40
60 61 2.457366 AAGACTGTAAGCGGGTCAAG 57.543 50.000 0.00 0.00 37.60 3.02
72 73 5.296151 TCACCTCTCATGAAAAAGACTGT 57.704 39.130 0.00 0.00 0.00 3.55
85 105 8.287439 TGTTAAAAGTTTTGATTCACCTCTCA 57.713 30.769 11.18 0.00 0.00 3.27
219 242 8.987890 GCTTTATTTTCCATTTTTCAAGTGCTA 58.012 29.630 0.00 0.00 0.00 3.49
220 243 7.716560 AGCTTTATTTTCCATTTTTCAAGTGCT 59.283 29.630 0.00 0.00 0.00 4.40
234 257 8.715088 TCGTAGTTGACTAAAGCTTTATTTTCC 58.285 33.333 18.93 8.00 0.00 3.13
241 264 4.952460 TGGTCGTAGTTGACTAAAGCTTT 58.048 39.130 17.30 17.30 38.91 3.51
244 267 5.857822 AAATGGTCGTAGTTGACTAAAGC 57.142 39.130 0.00 0.00 38.91 3.51
271 294 9.491675 TGACCATCTAAATTGTTCGTAGTTAAA 57.508 29.630 0.00 0.00 0.00 1.52
278 302 5.937540 TGTCATGACCATCTAAATTGTTCGT 59.062 36.000 22.85 0.00 0.00 3.85
279 303 6.421377 TGTCATGACCATCTAAATTGTTCG 57.579 37.500 22.85 0.00 0.00 3.95
282 306 6.189859 ACCATGTCATGACCATCTAAATTGT 58.810 36.000 22.85 7.11 0.00 2.71
309 333 3.925913 ACCAATCAAAATGCAATACACGC 59.074 39.130 0.00 0.00 0.00 5.34
347 371 0.389391 GTGATCCATCCACGATCCGT 59.611 55.000 0.00 0.00 42.36 4.69
371 466 1.000843 GGGGTTGGAAAATGTGCAGAC 59.999 52.381 0.00 0.00 0.00 3.51
403 498 2.202810 GAGAGAAAGGAGGCGCGG 60.203 66.667 8.83 0.00 0.00 6.46
405 500 0.461163 GAAGGAGAGAAAGGAGGCGC 60.461 60.000 0.00 0.00 0.00 6.53
406 501 0.176910 GGAAGGAGAGAAAGGAGGCG 59.823 60.000 0.00 0.00 0.00 5.52
407 502 1.578897 AGGAAGGAGAGAAAGGAGGC 58.421 55.000 0.00 0.00 0.00 4.70
408 503 3.843619 AGAAAGGAAGGAGAGAAAGGAGG 59.156 47.826 0.00 0.00 0.00 4.30
411 506 3.054728 GGGAGAAAGGAAGGAGAGAAAGG 60.055 52.174 0.00 0.00 0.00 3.11
412 507 3.054728 GGGGAGAAAGGAAGGAGAGAAAG 60.055 52.174 0.00 0.00 0.00 2.62
413 508 2.913617 GGGGAGAAAGGAAGGAGAGAAA 59.086 50.000 0.00 0.00 0.00 2.52
415 510 1.273896 GGGGGAGAAAGGAAGGAGAGA 60.274 57.143 0.00 0.00 0.00 3.10
494 603 1.549322 AGGAGAGGGTGGGGGTCTA 60.549 63.158 0.00 0.00 0.00 2.59
538 647 4.149598 GCTTGGGAAAGAAGGAAAAGGTA 58.850 43.478 0.00 0.00 0.00 3.08
598 707 1.224039 GCAGGCAGATCCAGAGCTT 59.776 57.895 0.00 0.00 37.29 3.74
657 767 3.289834 CTGGTGGTGGTGCTGCAC 61.290 66.667 24.02 24.02 0.00 4.57
846 956 4.148825 GAGGCTGATGCGTCGGGT 62.149 66.667 16.50 0.00 42.87 5.28
858 968 0.325765 GGACTGACCCTAAGGAGGCT 60.326 60.000 0.00 0.00 42.21 4.58
859 969 1.677637 CGGACTGACCCTAAGGAGGC 61.678 65.000 0.00 0.00 42.21 4.70
892 1007 2.189521 CGGAATGGACGGGGGAAG 59.810 66.667 0.00 0.00 0.00 3.46
893 1008 4.104183 GCGGAATGGACGGGGGAA 62.104 66.667 0.00 0.00 0.00 3.97
977 1103 1.790387 GACTCGTTCTGCATGCACC 59.210 57.895 18.46 6.74 0.00 5.01
982 1108 2.284798 ATCGCCGACTCGTTCTGCAT 62.285 55.000 0.00 0.00 34.20 3.96
1194 1320 0.822944 TGGTGTTACTGTCGTCGGGA 60.823 55.000 0.00 0.00 0.00 5.14
1202 1328 0.181824 GGGTGTGGTGGTGTTACTGT 59.818 55.000 0.00 0.00 0.00 3.55
1338 1487 6.489022 ACGCAACTAACTAATTTTCCTTTCCT 59.511 34.615 0.00 0.00 0.00 3.36
1511 1666 2.497675 TGGTGATGGAGCTCTACAGTTC 59.502 50.000 14.64 2.39 0.00 3.01
1576 1731 0.893270 ATACAAAGCAGCCACCGCAA 60.893 50.000 0.00 0.00 37.52 4.85
1614 1772 4.733077 TGGAGGATCAGGTTGGTTAAAA 57.267 40.909 0.00 0.00 36.25 1.52
1687 1853 4.027437 GGTCTTGAGTATCTCCTTGTCCT 58.973 47.826 0.00 0.00 34.92 3.85
1772 1948 2.352388 GGCGATAAGTTGCAGGTACAA 58.648 47.619 0.00 0.00 36.39 2.41
1827 2009 5.983540 AGAGACTTCAAACTGTCAAGACTT 58.016 37.500 1.53 0.00 35.81 3.01
1847 2029 2.069273 ACCTTGAATGACGCGAAAGAG 58.931 47.619 15.93 0.70 0.00 2.85
2034 2232 6.238374 GCTGTGCGTGTACCAGATTAAATTAT 60.238 38.462 0.81 0.00 0.00 1.28
2484 2738 9.899661 ATGCTTGTCTACCAAAGTTAATACATA 57.100 29.630 0.00 0.00 31.20 2.29
2487 2741 7.335924 TCCATGCTTGTCTACCAAAGTTAATAC 59.664 37.037 0.00 0.00 31.20 1.89
2490 2744 5.626142 TCCATGCTTGTCTACCAAAGTTAA 58.374 37.500 0.00 0.00 31.20 2.01
2491 2745 5.235850 TCCATGCTTGTCTACCAAAGTTA 57.764 39.130 0.00 0.00 31.20 2.24
2493 2747 3.788227 TCCATGCTTGTCTACCAAAGT 57.212 42.857 0.00 0.00 31.20 2.66
2665 3299 7.360113 TCTTTCACAGTCATATGCATAGGTA 57.640 36.000 17.26 2.78 0.00 3.08
2689 3324 6.710295 TGCAAAGTTGTACTGATGTAGACATT 59.290 34.615 0.00 0.00 36.57 2.71
2757 3392 7.109501 ACACAATATGCAGTACATAGGAACAA 58.890 34.615 0.00 0.00 44.40 2.83
2834 3471 1.507562 TGTACGCTGTCACCAATGTG 58.492 50.000 0.00 0.00 44.18 3.21
2902 3539 2.435805 ACACAGAGACCAAGAGAAGCAA 59.564 45.455 0.00 0.00 0.00 3.91
2911 3548 0.685097 GCAGGGTACACAGAGACCAA 59.315 55.000 0.00 0.00 37.47 3.67
2931 3568 6.183360 ACAAATCACAAACAGACAGTATGCAA 60.183 34.615 0.00 0.00 42.53 4.08
2971 3610 6.100859 TCCTGGAGAGCTTATTTCTCATGAAT 59.899 38.462 0.00 0.00 42.26 2.57
3041 3680 7.658167 TCATCAAACAGCATGAATCACAAATTT 59.342 29.630 0.00 0.00 39.69 1.82
3123 3762 5.939764 TGAACAGCAGGATAAGTGACTAT 57.060 39.130 0.00 0.00 0.00 2.12
3154 3793 9.674068 TGTAACATAGAACCAATACAAATGCTA 57.326 29.630 0.00 0.00 0.00 3.49
3184 3823 7.102346 TCCCACATTAATAAATTGTTTGCAGG 58.898 34.615 0.00 0.00 0.00 4.85
3223 3862 6.296489 GGGGATTTCTTTAGAAGAGGAACTGA 60.296 42.308 0.00 0.00 41.55 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.