Multiple sequence alignment - TraesCS1D01G008000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G008000 chr1D 100.000 6512 0 0 1 6512 3976125 3969614 0.000000e+00 12026
1 TraesCS1D01G008000 chr1D 89.591 2373 215 16 3178 5524 75675 73309 0.000000e+00 2985
2 TraesCS1D01G008000 chr1D 91.996 2124 162 8 3178 5297 5133126 5131007 0.000000e+00 2974
3 TraesCS1D01G008000 chr1D 93.634 1775 107 4 1410 3178 77380 75606 0.000000e+00 2647
4 TraesCS1D01G008000 chr1D 83.522 2203 314 27 995 3186 5135216 5133052 0.000000e+00 2012
5 TraesCS1D01G008000 chr1D 89.817 383 30 5 5816 6193 5130701 5130323 3.530000e-132 483
6 TraesCS1D01G008000 chr1B 88.699 4743 472 33 583 5297 5985518 5990224 0.000000e+00 5731
7 TraesCS1D01G008000 chr1B 90.252 2616 214 22 586 3186 6280742 6283331 0.000000e+00 3380
8 TraesCS1D01G008000 chr1B 88.668 2612 251 23 586 3186 5694526 5697103 0.000000e+00 3142
9 TraesCS1D01G008000 chr1B 90.100 2303 200 13 890 3186 22154543 22152263 0.000000e+00 2964
10 TraesCS1D01G008000 chr1B 86.895 2686 289 31 3178 5811 5697029 5699703 0.000000e+00 2952
11 TraesCS1D01G008000 chr1B 91.057 2147 171 10 992 3132 6060463 6062594 0.000000e+00 2881
12 TraesCS1D01G008000 chr1B 89.629 2208 208 7 991 3186 629652713 629654911 0.000000e+00 2789
13 TraesCS1D01G008000 chr1B 84.452 2830 350 33 3225 5973 6062609 6065429 0.000000e+00 2706
14 TraesCS1D01G008000 chr1B 85.313 2601 323 30 606 3186 6488134 6485573 0.000000e+00 2632
15 TraesCS1D01G008000 chr1B 86.767 2388 267 25 3178 5522 6485647 6483266 0.000000e+00 2614
16 TraesCS1D01G008000 chr1B 88.741 1954 211 9 3179 5128 22681231 22679283 0.000000e+00 2381
17 TraesCS1D01G008000 chr1B 87.339 2093 237 19 3178 5257 629654837 629656914 0.000000e+00 2372
18 TraesCS1D01G008000 chr1B 84.378 2394 314 32 3178 5524 7254880 7252500 0.000000e+00 2294
19 TraesCS1D01G008000 chr1B 87.145 1727 196 10 934 2657 7337116 7338819 0.000000e+00 1936
20 TraesCS1D01G008000 chr1B 83.754 2062 295 28 3189 5236 5953602 5955637 0.000000e+00 1916
21 TraesCS1D01G008000 chr1B 82.554 1026 120 25 4840 5811 6284914 6285934 0.000000e+00 848
22 TraesCS1D01G008000 chr1B 84.808 757 51 39 5662 6402 5758750 5759458 0.000000e+00 702
23 TraesCS1D01G008000 chr1B 84.358 748 61 34 5665 6402 6483134 6482433 0.000000e+00 682
24 TraesCS1D01G008000 chr1B 77.342 790 94 31 5254 5973 629661883 629662657 7.920000e-104 388
25 TraesCS1D01G008000 chr1B 80.926 540 59 32 5468 5973 7698228 7697699 2.850000e-103 387
26 TraesCS1D01G008000 chr1B 91.195 159 13 1 5816 5973 22666160 22666002 1.420000e-51 215
27 TraesCS1D01G008000 chr1B 88.679 159 17 1 5816 5973 6285968 6286126 6.660000e-45 193
28 TraesCS1D01G008000 chr1A 86.935 2633 289 25 574 3186 6341683 6339086 0.000000e+00 2905
29 TraesCS1D01G008000 chr1A 86.593 2633 292 28 569 3186 5506406 5503820 0.000000e+00 2850
30 TraesCS1D01G008000 chr1A 86.571 2636 291 34 586 3201 4497353 4499945 0.000000e+00 2848
31 TraesCS1D01G008000 chr1A 88.769 2137 218 15 3178 5297 6339160 6337029 0.000000e+00 2597
32 TraesCS1D01G008000 chr1A 84.691 2038 264 28 569 2592 6012948 6010945 0.000000e+00 1991
33 TraesCS1D01G008000 chr1A 83.058 1694 254 14 982 2661 5527087 5525413 0.000000e+00 1507
34 TraesCS1D01G008000 chr1A 86.460 709 52 19 5816 6512 6336727 6336051 0.000000e+00 737
35 TraesCS1D01G008000 chr1A 92.857 154 11 0 5820 5973 6293794 6293641 2.360000e-54 224
36 TraesCS1D01G008000 chr1A 98.214 56 1 0 6141 6196 4502424 4502479 1.490000e-16 99
37 TraesCS1D01G008000 chr1A 98.214 56 1 0 6141 6196 5500153 5500098 1.490000e-16 99
38 TraesCS1D01G008000 chr1A 98.214 56 1 0 6141 6196 5501631 5501576 1.490000e-16 99
39 TraesCS1D01G008000 chr5D 81.696 224 17 4 5818 6031 52326322 52326531 1.450000e-36 165
40 TraesCS1D01G008000 chr5B 86.813 91 10 2 6116 6205 55503587 55503676 4.150000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G008000 chr1D 3969614 3976125 6511 True 12026.000000 12026 100.000000 1 6512 1 chr1D.!!$R1 6511
1 TraesCS1D01G008000 chr1D 73309 77380 4071 True 2816.000000 2985 91.612500 1410 5524 2 chr1D.!!$R2 4114
2 TraesCS1D01G008000 chr1D 5130323 5135216 4893 True 1823.000000 2974 88.445000 995 6193 3 chr1D.!!$R3 5198
3 TraesCS1D01G008000 chr1B 5985518 5990224 4706 False 5731.000000 5731 88.699000 583 5297 1 chr1B.!!$F3 4714
4 TraesCS1D01G008000 chr1B 5694526 5699703 5177 False 3047.000000 3142 87.781500 586 5811 2 chr1B.!!$F6 5225
5 TraesCS1D01G008000 chr1B 22152263 22154543 2280 True 2964.000000 2964 90.100000 890 3186 1 chr1B.!!$R3 2296
6 TraesCS1D01G008000 chr1B 6060463 6065429 4966 False 2793.500000 2881 87.754500 992 5973 2 chr1B.!!$F7 4981
7 TraesCS1D01G008000 chr1B 629652713 629656914 4201 False 2580.500000 2789 88.484000 991 5257 2 chr1B.!!$F9 4266
8 TraesCS1D01G008000 chr1B 22679283 22681231 1948 True 2381.000000 2381 88.741000 3179 5128 1 chr1B.!!$R5 1949
9 TraesCS1D01G008000 chr1B 7252500 7254880 2380 True 2294.000000 2294 84.378000 3178 5524 1 chr1B.!!$R1 2346
10 TraesCS1D01G008000 chr1B 6482433 6488134 5701 True 1976.000000 2632 85.479333 606 6402 3 chr1B.!!$R6 5796
11 TraesCS1D01G008000 chr1B 7337116 7338819 1703 False 1936.000000 1936 87.145000 934 2657 1 chr1B.!!$F4 1723
12 TraesCS1D01G008000 chr1B 5953602 5955637 2035 False 1916.000000 1916 83.754000 3189 5236 1 chr1B.!!$F2 2047
13 TraesCS1D01G008000 chr1B 6280742 6286126 5384 False 1473.666667 3380 87.161667 586 5973 3 chr1B.!!$F8 5387
14 TraesCS1D01G008000 chr1B 5758750 5759458 708 False 702.000000 702 84.808000 5662 6402 1 chr1B.!!$F1 740
15 TraesCS1D01G008000 chr1B 629661883 629662657 774 False 388.000000 388 77.342000 5254 5973 1 chr1B.!!$F5 719
16 TraesCS1D01G008000 chr1B 7697699 7698228 529 True 387.000000 387 80.926000 5468 5973 1 chr1B.!!$R2 505
17 TraesCS1D01G008000 chr1A 6336051 6341683 5632 True 2079.666667 2905 87.388000 574 6512 3 chr1A.!!$R5 5938
18 TraesCS1D01G008000 chr1A 6010945 6012948 2003 True 1991.000000 1991 84.691000 569 2592 1 chr1A.!!$R2 2023
19 TraesCS1D01G008000 chr1A 5525413 5527087 1674 True 1507.000000 1507 83.058000 982 2661 1 chr1A.!!$R1 1679
20 TraesCS1D01G008000 chr1A 4497353 4502479 5126 False 1473.500000 2848 92.392500 586 6196 2 chr1A.!!$F1 5610
21 TraesCS1D01G008000 chr1A 5500098 5506406 6308 True 1016.000000 2850 94.340333 569 6196 3 chr1A.!!$R4 5627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.037734 TGGGTCGTCTCAGTAGAGCA 59.962 55.000 4.32 0.0 41.81 4.26 F
670 674 0.109723 TAGCCACCACAACTTCACCC 59.890 55.000 0.00 0.0 0.00 4.61 F
675 679 0.544697 ACCACAACTTCACCCGAGTT 59.455 50.000 0.00 0.0 37.82 3.01 F
679 683 0.588252 CAACTTCACCCGAGTTGCTG 59.412 55.000 4.31 0.0 45.02 4.41 F
2592 2658 1.132453 GTCGTTGCAATTAAGGAGCCC 59.868 52.381 0.59 0.0 0.00 5.19 F
3620 3812 0.928229 GTAGCATTACCCGAAGCACG 59.072 55.000 0.00 0.0 42.18 5.34 F
3741 3933 1.833630 AGATGGGATGCAGTCGAAGAA 59.166 47.619 0.00 0.0 39.69 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1659 2.025155 TGGGAACTACTGCGAGATCTC 58.975 52.381 13.05 13.05 0.00 2.75 R
2592 2658 1.885887 TCCGAAAGCCACTCAATTTGG 59.114 47.619 0.00 0.00 37.17 3.28 R
2908 2992 7.923800 GTTCAAGAGAACGGCAGTTGGAAAC 62.924 48.000 7.05 0.00 45.21 2.78 R
3125 3212 4.141135 TCTCTACCTGGCATAGTTCTAGCT 60.141 45.833 0.00 0.00 0.00 3.32 R
4575 4843 0.253044 GGACTAACTCTGCCATGCCA 59.747 55.000 0.00 0.00 0.00 4.92 R
5302 5596 1.026182 CACACATGCTGGCGTGGTAT 61.026 55.000 17.43 1.74 37.45 2.73 R
5929 6420 1.152440 AGATGGTCTCGCCCTAGGG 60.152 63.158 24.89 24.89 36.04 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.434713 CCAGCACCACTAAATTTGTACC 57.565 45.455 0.00 0.00 0.00 3.34
22 23 3.823873 CCAGCACCACTAAATTTGTACCA 59.176 43.478 0.00 0.00 0.00 3.25
23 24 4.320935 CCAGCACCACTAAATTTGTACCAC 60.321 45.833 0.00 0.00 0.00 4.16
24 25 4.277174 CAGCACCACTAAATTTGTACCACA 59.723 41.667 0.00 0.00 0.00 4.17
25 26 5.048083 CAGCACCACTAAATTTGTACCACAT 60.048 40.000 0.00 0.00 0.00 3.21
26 27 5.048083 AGCACCACTAAATTTGTACCACATG 60.048 40.000 0.00 0.00 0.00 3.21
27 28 5.160641 CACCACTAAATTTGTACCACATGC 58.839 41.667 0.00 0.00 0.00 4.06
28 29 4.830046 ACCACTAAATTTGTACCACATGCA 59.170 37.500 0.00 0.00 0.00 3.96
29 30 5.480073 ACCACTAAATTTGTACCACATGCAT 59.520 36.000 0.00 0.00 0.00 3.96
30 31 6.014669 ACCACTAAATTTGTACCACATGCATT 60.015 34.615 0.00 0.00 0.00 3.56
31 32 7.177568 ACCACTAAATTTGTACCACATGCATTA 59.822 33.333 0.00 0.00 0.00 1.90
32 33 7.487829 CCACTAAATTTGTACCACATGCATTAC 59.512 37.037 0.00 0.00 0.00 1.89
33 34 8.243426 CACTAAATTTGTACCACATGCATTACT 58.757 33.333 0.00 0.00 0.00 2.24
34 35 8.243426 ACTAAATTTGTACCACATGCATTACTG 58.757 33.333 0.00 0.00 0.00 2.74
50 51 5.522456 CATTACTGCACTTCAAGCTTTTCA 58.478 37.500 0.00 0.00 0.00 2.69
51 52 5.574891 TTACTGCACTTCAAGCTTTTCAA 57.425 34.783 0.00 0.00 0.00 2.69
52 53 3.774066 ACTGCACTTCAAGCTTTTCAAC 58.226 40.909 0.00 0.00 0.00 3.18
53 54 3.193267 ACTGCACTTCAAGCTTTTCAACA 59.807 39.130 0.00 0.00 0.00 3.33
54 55 3.772932 TGCACTTCAAGCTTTTCAACAG 58.227 40.909 0.00 0.00 0.00 3.16
55 56 3.193267 TGCACTTCAAGCTTTTCAACAGT 59.807 39.130 0.00 0.00 0.00 3.55
56 57 4.176271 GCACTTCAAGCTTTTCAACAGTT 58.824 39.130 0.00 0.00 0.00 3.16
57 58 4.266265 GCACTTCAAGCTTTTCAACAGTTC 59.734 41.667 0.00 0.00 0.00 3.01
58 59 4.800471 CACTTCAAGCTTTTCAACAGTTCC 59.200 41.667 0.00 0.00 0.00 3.62
59 60 4.706962 ACTTCAAGCTTTTCAACAGTTCCT 59.293 37.500 0.00 0.00 0.00 3.36
60 61 5.185828 ACTTCAAGCTTTTCAACAGTTCCTT 59.814 36.000 0.00 0.00 0.00 3.36
61 62 6.377146 ACTTCAAGCTTTTCAACAGTTCCTTA 59.623 34.615 0.00 0.00 0.00 2.69
62 63 6.767524 TCAAGCTTTTCAACAGTTCCTTAA 57.232 33.333 0.00 0.00 0.00 1.85
63 64 7.164230 TCAAGCTTTTCAACAGTTCCTTAAA 57.836 32.000 0.00 0.00 0.00 1.52
64 65 7.781056 TCAAGCTTTTCAACAGTTCCTTAAAT 58.219 30.769 0.00 0.00 0.00 1.40
65 66 7.920682 TCAAGCTTTTCAACAGTTCCTTAAATC 59.079 33.333 0.00 0.00 0.00 2.17
66 67 7.588497 AGCTTTTCAACAGTTCCTTAAATCT 57.412 32.000 0.00 0.00 0.00 2.40
67 68 8.691661 AGCTTTTCAACAGTTCCTTAAATCTA 57.308 30.769 0.00 0.00 0.00 1.98
68 69 9.131791 AGCTTTTCAACAGTTCCTTAAATCTAA 57.868 29.630 0.00 0.00 0.00 2.10
69 70 9.914131 GCTTTTCAACAGTTCCTTAAATCTAAT 57.086 29.630 0.00 0.00 0.00 1.73
71 72 9.691362 TTTTCAACAGTTCCTTAAATCTAATGC 57.309 29.630 0.00 0.00 0.00 3.56
72 73 7.072177 TCAACAGTTCCTTAAATCTAATGCG 57.928 36.000 0.00 0.00 0.00 4.73
73 74 5.485662 ACAGTTCCTTAAATCTAATGCGC 57.514 39.130 0.00 0.00 0.00 6.09
74 75 4.335594 ACAGTTCCTTAAATCTAATGCGCC 59.664 41.667 4.18 0.00 0.00 6.53
75 76 4.576463 CAGTTCCTTAAATCTAATGCGCCT 59.424 41.667 4.18 0.00 0.00 5.52
76 77 5.066505 CAGTTCCTTAAATCTAATGCGCCTT 59.933 40.000 4.18 3.40 0.00 4.35
77 78 5.066505 AGTTCCTTAAATCTAATGCGCCTTG 59.933 40.000 4.18 0.00 0.00 3.61
78 79 3.315191 TCCTTAAATCTAATGCGCCTTGC 59.685 43.478 4.18 0.00 46.70 4.01
89 90 2.849880 GCGCCTTGCATTTAAGATGA 57.150 45.000 0.00 0.00 45.45 2.92
90 91 2.454055 GCGCCTTGCATTTAAGATGAC 58.546 47.619 0.00 0.00 45.45 3.06
91 92 2.098117 GCGCCTTGCATTTAAGATGACT 59.902 45.455 0.00 0.00 45.45 3.41
92 93 3.312421 GCGCCTTGCATTTAAGATGACTA 59.688 43.478 0.00 0.00 45.45 2.59
93 94 4.201910 GCGCCTTGCATTTAAGATGACTAA 60.202 41.667 0.00 0.00 45.45 2.24
94 95 5.506317 GCGCCTTGCATTTAAGATGACTAAT 60.506 40.000 0.00 0.00 45.45 1.73
95 96 5.911280 CGCCTTGCATTTAAGATGACTAATG 59.089 40.000 0.00 0.00 0.00 1.90
96 97 6.211515 GCCTTGCATTTAAGATGACTAATGG 58.788 40.000 0.00 0.00 0.00 3.16
97 98 6.736794 GCCTTGCATTTAAGATGACTAATGGG 60.737 42.308 0.00 0.00 0.00 4.00
98 99 6.547141 CCTTGCATTTAAGATGACTAATGGGA 59.453 38.462 0.00 0.00 0.00 4.37
99 100 7.255381 CCTTGCATTTAAGATGACTAATGGGAG 60.255 40.741 0.00 0.00 0.00 4.30
100 101 6.899089 TGCATTTAAGATGACTAATGGGAGA 58.101 36.000 0.00 0.00 0.00 3.71
101 102 6.994496 TGCATTTAAGATGACTAATGGGAGAG 59.006 38.462 0.00 0.00 0.00 3.20
102 103 6.072783 GCATTTAAGATGACTAATGGGAGAGC 60.073 42.308 0.00 0.00 0.00 4.09
103 104 6.560003 TTTAAGATGACTAATGGGAGAGCA 57.440 37.500 0.00 0.00 0.00 4.26
104 105 6.753913 TTAAGATGACTAATGGGAGAGCAT 57.246 37.500 0.00 0.00 0.00 3.79
105 106 4.888326 AGATGACTAATGGGAGAGCATC 57.112 45.455 0.00 0.00 34.72 3.91
193 194 7.984422 ATGAAAACCATTTGGAATTTCTTCC 57.016 32.000 21.60 0.00 41.09 3.46
194 195 7.997803 AATGAAAACCATTTGGAATTTCTTCCA 59.002 29.630 21.60 2.98 46.00 3.53
207 208 7.178712 GAATTTCTTCCAGTCCGTATGTATG 57.821 40.000 0.00 0.00 0.00 2.39
208 209 5.670792 TTTCTTCCAGTCCGTATGTATGT 57.329 39.130 0.00 0.00 0.00 2.29
209 210 6.778834 TTTCTTCCAGTCCGTATGTATGTA 57.221 37.500 0.00 0.00 0.00 2.29
210 211 6.971726 TTCTTCCAGTCCGTATGTATGTAT 57.028 37.500 0.00 0.00 0.00 2.29
211 212 6.327279 TCTTCCAGTCCGTATGTATGTATG 57.673 41.667 0.00 0.00 0.00 2.39
212 213 5.831525 TCTTCCAGTCCGTATGTATGTATGT 59.168 40.000 0.00 0.00 0.00 2.29
213 214 6.999871 TCTTCCAGTCCGTATGTATGTATGTA 59.000 38.462 0.00 0.00 0.00 2.29
214 215 7.668469 TCTTCCAGTCCGTATGTATGTATGTAT 59.332 37.037 0.00 0.00 0.00 2.29
215 216 7.387119 TCCAGTCCGTATGTATGTATGTATC 57.613 40.000 0.00 0.00 0.00 2.24
216 217 6.093082 TCCAGTCCGTATGTATGTATGTATCG 59.907 42.308 0.00 0.00 0.00 2.92
217 218 5.737757 CAGTCCGTATGTATGTATGTATCGC 59.262 44.000 0.00 0.00 0.00 4.58
218 219 5.032863 GTCCGTATGTATGTATGTATCGCC 58.967 45.833 0.00 0.00 0.00 5.54
219 220 4.701171 TCCGTATGTATGTATGTATCGCCA 59.299 41.667 0.00 0.00 0.00 5.69
220 221 4.796830 CCGTATGTATGTATGTATCGCCAC 59.203 45.833 0.00 0.00 0.00 5.01
221 222 5.395642 CGTATGTATGTATGTATCGCCACA 58.604 41.667 0.00 0.00 0.00 4.17
222 223 5.285370 CGTATGTATGTATGTATCGCCACAC 59.715 44.000 0.00 0.00 0.00 3.82
223 224 3.634283 TGTATGTATGTATCGCCACACG 58.366 45.455 0.00 0.00 45.62 4.49
224 225 2.882927 ATGTATGTATCGCCACACGT 57.117 45.000 0.00 0.00 44.19 4.49
225 226 3.994204 ATGTATGTATCGCCACACGTA 57.006 42.857 0.00 0.00 44.19 3.57
226 227 3.069074 TGTATGTATCGCCACACGTAC 57.931 47.619 0.00 0.00 44.19 3.67
227 228 2.684374 TGTATGTATCGCCACACGTACT 59.316 45.455 0.00 0.00 44.19 2.73
228 229 2.203800 ATGTATCGCCACACGTACTG 57.796 50.000 0.00 0.00 44.19 2.74
229 230 0.171679 TGTATCGCCACACGTACTGG 59.828 55.000 7.02 7.02 44.19 4.00
236 237 1.992170 CCACACGTACTGGCTCTTAC 58.008 55.000 0.00 0.00 0.00 2.34
237 238 1.271379 CCACACGTACTGGCTCTTACA 59.729 52.381 0.00 0.00 0.00 2.41
238 239 2.094182 CCACACGTACTGGCTCTTACAT 60.094 50.000 0.00 0.00 0.00 2.29
239 240 3.129813 CCACACGTACTGGCTCTTACATA 59.870 47.826 0.00 0.00 0.00 2.29
240 241 4.202121 CCACACGTACTGGCTCTTACATAT 60.202 45.833 0.00 0.00 0.00 1.78
241 242 5.348986 CACACGTACTGGCTCTTACATATT 58.651 41.667 0.00 0.00 0.00 1.28
242 243 6.460537 CCACACGTACTGGCTCTTACATATTA 60.461 42.308 0.00 0.00 0.00 0.98
243 244 7.145985 CACACGTACTGGCTCTTACATATTAT 58.854 38.462 0.00 0.00 0.00 1.28
244 245 7.652105 CACACGTACTGGCTCTTACATATTATT 59.348 37.037 0.00 0.00 0.00 1.40
245 246 8.202137 ACACGTACTGGCTCTTACATATTATTT 58.798 33.333 0.00 0.00 0.00 1.40
246 247 9.042008 CACGTACTGGCTCTTACATATTATTTT 57.958 33.333 0.00 0.00 0.00 1.82
247 248 9.609346 ACGTACTGGCTCTTACATATTATTTTT 57.391 29.630 0.00 0.00 0.00 1.94
274 275 9.823647 TTGATCCAGTCATATTTTTAGAGACTC 57.176 33.333 0.00 0.00 37.45 3.36
275 276 8.424918 TGATCCAGTCATATTTTTAGAGACTCC 58.575 37.037 0.00 0.00 37.45 3.85
276 277 7.979786 TCCAGTCATATTTTTAGAGACTCCT 57.020 36.000 0.00 0.00 37.45 3.69
277 278 8.012957 TCCAGTCATATTTTTAGAGACTCCTC 57.987 38.462 0.00 0.00 37.45 3.71
303 304 5.893897 TTTTGTTTTGAAAATTGCCTGCT 57.106 30.435 0.00 0.00 0.00 4.24
304 305 6.992063 TTTTGTTTTGAAAATTGCCTGCTA 57.008 29.167 0.00 0.00 0.00 3.49
305 306 7.565323 TTTTGTTTTGAAAATTGCCTGCTAT 57.435 28.000 0.00 0.00 0.00 2.97
306 307 7.565323 TTTGTTTTGAAAATTGCCTGCTATT 57.435 28.000 0.00 0.00 0.00 1.73
307 308 6.542574 TGTTTTGAAAATTGCCTGCTATTG 57.457 33.333 0.00 0.00 0.00 1.90
308 309 6.054295 TGTTTTGAAAATTGCCTGCTATTGT 58.946 32.000 0.00 0.00 0.00 2.71
309 310 6.018098 TGTTTTGAAAATTGCCTGCTATTGTG 60.018 34.615 0.00 0.00 0.00 3.33
310 311 4.191033 TGAAAATTGCCTGCTATTGTGG 57.809 40.909 0.00 0.00 0.00 4.17
311 312 3.055963 TGAAAATTGCCTGCTATTGTGGG 60.056 43.478 0.00 0.00 0.00 4.61
312 313 2.236489 AATTGCCTGCTATTGTGGGT 57.764 45.000 0.00 0.00 0.00 4.51
313 314 1.767759 ATTGCCTGCTATTGTGGGTC 58.232 50.000 0.00 0.00 0.00 4.46
314 315 0.676466 TTGCCTGCTATTGTGGGTCG 60.676 55.000 0.00 0.00 0.00 4.79
315 316 1.078426 GCCTGCTATTGTGGGTCGT 60.078 57.895 0.00 0.00 0.00 4.34
316 317 1.090052 GCCTGCTATTGTGGGTCGTC 61.090 60.000 0.00 0.00 0.00 4.20
317 318 0.537188 CCTGCTATTGTGGGTCGTCT 59.463 55.000 0.00 0.00 0.00 4.18
318 319 1.471676 CCTGCTATTGTGGGTCGTCTC 60.472 57.143 0.00 0.00 0.00 3.36
319 320 1.204704 CTGCTATTGTGGGTCGTCTCA 59.795 52.381 0.00 0.00 0.00 3.27
320 321 1.204704 TGCTATTGTGGGTCGTCTCAG 59.795 52.381 0.00 0.00 0.00 3.35
321 322 1.204941 GCTATTGTGGGTCGTCTCAGT 59.795 52.381 0.00 0.00 0.00 3.41
322 323 2.426024 GCTATTGTGGGTCGTCTCAGTA 59.574 50.000 0.00 0.00 0.00 2.74
323 324 3.489398 GCTATTGTGGGTCGTCTCAGTAG 60.489 52.174 0.00 0.00 0.00 2.57
324 325 2.281539 TTGTGGGTCGTCTCAGTAGA 57.718 50.000 0.00 0.00 0.00 2.59
325 326 1.822506 TGTGGGTCGTCTCAGTAGAG 58.177 55.000 0.00 0.00 43.48 2.43
326 327 0.452585 GTGGGTCGTCTCAGTAGAGC 59.547 60.000 0.00 0.00 41.81 4.09
327 328 0.037734 TGGGTCGTCTCAGTAGAGCA 59.962 55.000 4.32 0.00 41.81 4.26
328 329 0.736053 GGGTCGTCTCAGTAGAGCAG 59.264 60.000 4.32 0.00 41.81 4.24
329 330 1.455248 GGTCGTCTCAGTAGAGCAGT 58.545 55.000 0.00 0.00 41.81 4.40
330 331 1.131504 GGTCGTCTCAGTAGAGCAGTG 59.868 57.143 0.00 0.00 41.81 3.66
331 332 1.807742 GTCGTCTCAGTAGAGCAGTGT 59.192 52.381 0.00 0.00 41.81 3.55
332 333 2.226912 GTCGTCTCAGTAGAGCAGTGTT 59.773 50.000 0.00 0.00 41.81 3.32
333 334 2.885266 TCGTCTCAGTAGAGCAGTGTTT 59.115 45.455 0.00 0.00 41.81 2.83
334 335 2.983136 CGTCTCAGTAGAGCAGTGTTTG 59.017 50.000 0.00 0.00 41.81 2.93
335 336 3.321497 GTCTCAGTAGAGCAGTGTTTGG 58.679 50.000 0.00 0.00 41.81 3.28
336 337 2.072298 CTCAGTAGAGCAGTGTTTGGC 58.928 52.381 0.00 0.00 34.61 4.52
337 338 1.416030 TCAGTAGAGCAGTGTTTGGCA 59.584 47.619 0.00 0.00 0.00 4.92
338 339 4.653981 CTCAGTAGAGCAGTGTTTGGCAC 61.654 52.174 0.00 0.00 40.64 5.01
347 348 2.939460 GTGTTTGGCACCCATGATAC 57.061 50.000 0.00 0.00 42.10 2.24
348 349 2.166829 GTGTTTGGCACCCATGATACA 58.833 47.619 0.00 0.00 42.10 2.29
349 350 2.094752 GTGTTTGGCACCCATGATACAC 60.095 50.000 0.00 0.00 42.10 2.90
350 351 2.166829 GTTTGGCACCCATGATACACA 58.833 47.619 0.00 0.00 31.53 3.72
351 352 2.760092 GTTTGGCACCCATGATACACAT 59.240 45.455 0.00 0.00 40.17 3.21
352 353 7.843973 GTGTTTGGCACCCATGATACACATG 62.844 48.000 0.00 0.00 44.99 3.21
372 373 3.025619 GCAGTGTGCGTCAGCTTT 58.974 55.556 0.00 0.00 45.42 3.51
373 374 1.369689 GCAGTGTGCGTCAGCTTTG 60.370 57.895 0.00 0.00 45.42 2.77
374 375 1.369689 CAGTGTGCGTCAGCTTTGC 60.370 57.895 0.00 0.00 45.42 3.68
375 376 1.819208 AGTGTGCGTCAGCTTTGCA 60.819 52.632 0.36 0.36 45.42 4.08
376 377 1.369689 GTGTGCGTCAGCTTTGCAG 60.370 57.895 4.62 0.00 45.42 4.41
385 386 4.331356 GCTTTGCAGCACAAGTGG 57.669 55.556 14.80 0.00 46.49 4.00
386 387 1.438814 GCTTTGCAGCACAAGTGGT 59.561 52.632 14.80 0.00 46.49 4.16
398 399 4.906065 CACAAGTGGTGCTGCATATAAT 57.094 40.909 5.27 0.00 41.36 1.28
399 400 4.852138 CACAAGTGGTGCTGCATATAATC 58.148 43.478 5.27 0.00 41.36 1.75
400 401 3.885297 ACAAGTGGTGCTGCATATAATCC 59.115 43.478 5.27 1.15 0.00 3.01
401 402 3.862877 AGTGGTGCTGCATATAATCCA 57.137 42.857 5.27 4.26 0.00 3.41
402 403 4.377762 AGTGGTGCTGCATATAATCCAT 57.622 40.909 5.27 0.00 0.00 3.41
403 404 4.077108 AGTGGTGCTGCATATAATCCATG 58.923 43.478 5.27 0.00 0.00 3.66
404 405 3.192001 GTGGTGCTGCATATAATCCATGG 59.808 47.826 4.97 4.97 0.00 3.66
405 406 2.165030 GGTGCTGCATATAATCCATGGC 59.835 50.000 6.96 0.00 0.00 4.40
406 407 2.165030 GTGCTGCATATAATCCATGGCC 59.835 50.000 6.96 0.00 0.00 5.36
407 408 2.042026 TGCTGCATATAATCCATGGCCT 59.958 45.455 6.96 0.00 0.00 5.19
408 409 2.686915 GCTGCATATAATCCATGGCCTC 59.313 50.000 6.96 0.00 0.00 4.70
409 410 3.624205 GCTGCATATAATCCATGGCCTCT 60.624 47.826 6.96 0.00 0.00 3.69
410 411 4.597004 CTGCATATAATCCATGGCCTCTT 58.403 43.478 6.96 0.41 0.00 2.85
411 412 4.338012 TGCATATAATCCATGGCCTCTTG 58.662 43.478 6.96 1.53 0.00 3.02
412 413 3.129988 GCATATAATCCATGGCCTCTTGC 59.870 47.826 6.96 8.16 40.16 4.01
413 414 4.597004 CATATAATCCATGGCCTCTTGCT 58.403 43.478 6.96 0.00 40.92 3.91
414 415 5.748402 CATATAATCCATGGCCTCTTGCTA 58.252 41.667 6.96 0.00 40.92 3.49
415 416 4.729552 ATAATCCATGGCCTCTTGCTAA 57.270 40.909 6.96 0.00 40.92 3.09
416 417 2.355010 ATCCATGGCCTCTTGCTAAC 57.645 50.000 6.96 0.00 40.92 2.34
417 418 0.991146 TCCATGGCCTCTTGCTAACA 59.009 50.000 6.96 0.00 40.92 2.41
418 419 1.565759 TCCATGGCCTCTTGCTAACAT 59.434 47.619 6.96 0.00 40.92 2.71
419 420 1.679680 CCATGGCCTCTTGCTAACATG 59.320 52.381 3.32 0.00 40.92 3.21
420 421 2.372264 CATGGCCTCTTGCTAACATGT 58.628 47.619 3.32 0.00 40.92 3.21
421 422 3.544684 CATGGCCTCTTGCTAACATGTA 58.455 45.455 3.32 0.00 40.92 2.29
422 423 3.712016 TGGCCTCTTGCTAACATGTAA 57.288 42.857 3.32 0.00 40.92 2.41
423 424 4.027674 TGGCCTCTTGCTAACATGTAAA 57.972 40.909 3.32 0.00 40.92 2.01
424 425 4.009675 TGGCCTCTTGCTAACATGTAAAG 58.990 43.478 3.32 0.76 40.92 1.85
425 426 4.010349 GGCCTCTTGCTAACATGTAAAGT 58.990 43.478 0.00 0.00 40.92 2.66
426 427 4.459337 GGCCTCTTGCTAACATGTAAAGTT 59.541 41.667 0.00 0.00 40.92 2.66
427 428 5.393962 GCCTCTTGCTAACATGTAAAGTTG 58.606 41.667 0.00 0.00 36.87 3.16
428 429 5.619981 GCCTCTTGCTAACATGTAAAGTTGG 60.620 44.000 0.00 9.06 36.87 3.77
429 430 5.106157 CCTCTTGCTAACATGTAAAGTTGGG 60.106 44.000 0.00 3.14 0.00 4.12
430 431 4.217550 TCTTGCTAACATGTAAAGTTGGGC 59.782 41.667 0.00 0.00 33.18 5.36
431 432 3.761897 TGCTAACATGTAAAGTTGGGCT 58.238 40.909 0.00 0.00 33.48 5.19
432 433 3.505680 TGCTAACATGTAAAGTTGGGCTG 59.494 43.478 0.00 0.00 33.48 4.85
433 434 3.119495 GCTAACATGTAAAGTTGGGCTGG 60.119 47.826 0.00 0.00 0.00 4.85
434 435 2.969821 ACATGTAAAGTTGGGCTGGA 57.030 45.000 0.00 0.00 0.00 3.86
435 436 2.795329 ACATGTAAAGTTGGGCTGGAG 58.205 47.619 0.00 0.00 0.00 3.86
436 437 2.094675 CATGTAAAGTTGGGCTGGAGG 58.905 52.381 0.00 0.00 0.00 4.30
437 438 0.404040 TGTAAAGTTGGGCTGGAGGG 59.596 55.000 0.00 0.00 0.00 4.30
438 439 0.696501 GTAAAGTTGGGCTGGAGGGA 59.303 55.000 0.00 0.00 0.00 4.20
439 440 1.074889 GTAAAGTTGGGCTGGAGGGAA 59.925 52.381 0.00 0.00 0.00 3.97
440 441 0.560688 AAAGTTGGGCTGGAGGGAAA 59.439 50.000 0.00 0.00 0.00 3.13
441 442 0.786435 AAGTTGGGCTGGAGGGAAAT 59.214 50.000 0.00 0.00 0.00 2.17
442 443 1.681229 AGTTGGGCTGGAGGGAAATA 58.319 50.000 0.00 0.00 0.00 1.40
443 444 2.000048 AGTTGGGCTGGAGGGAAATAA 59.000 47.619 0.00 0.00 0.00 1.40
444 445 2.381961 AGTTGGGCTGGAGGGAAATAAA 59.618 45.455 0.00 0.00 0.00 1.40
445 446 2.760650 GTTGGGCTGGAGGGAAATAAAG 59.239 50.000 0.00 0.00 0.00 1.85
446 447 2.000048 TGGGCTGGAGGGAAATAAAGT 59.000 47.619 0.00 0.00 0.00 2.66
447 448 3.194620 TGGGCTGGAGGGAAATAAAGTA 58.805 45.455 0.00 0.00 0.00 2.24
448 449 3.594232 TGGGCTGGAGGGAAATAAAGTAA 59.406 43.478 0.00 0.00 0.00 2.24
449 450 4.044825 TGGGCTGGAGGGAAATAAAGTAAA 59.955 41.667 0.00 0.00 0.00 2.01
450 451 4.645136 GGGCTGGAGGGAAATAAAGTAAAG 59.355 45.833 0.00 0.00 0.00 1.85
451 452 5.262009 GGCTGGAGGGAAATAAAGTAAAGT 58.738 41.667 0.00 0.00 0.00 2.66
452 453 5.125578 GGCTGGAGGGAAATAAAGTAAAGTG 59.874 44.000 0.00 0.00 0.00 3.16
453 454 5.393135 GCTGGAGGGAAATAAAGTAAAGTGC 60.393 44.000 0.00 0.00 0.00 4.40
454 455 5.887754 TGGAGGGAAATAAAGTAAAGTGCT 58.112 37.500 0.00 0.00 0.00 4.40
455 456 7.023171 TGGAGGGAAATAAAGTAAAGTGCTA 57.977 36.000 0.00 0.00 0.00 3.49
456 457 6.882678 TGGAGGGAAATAAAGTAAAGTGCTAC 59.117 38.462 0.00 0.00 0.00 3.58
457 458 6.882678 GGAGGGAAATAAAGTAAAGTGCTACA 59.117 38.462 0.00 0.00 0.00 2.74
458 459 7.392393 GGAGGGAAATAAAGTAAAGTGCTACAA 59.608 37.037 0.00 0.00 0.00 2.41
459 460 8.879427 AGGGAAATAAAGTAAAGTGCTACAAT 57.121 30.769 0.00 0.00 0.00 2.71
460 461 8.957466 AGGGAAATAAAGTAAAGTGCTACAATC 58.043 33.333 0.00 0.00 0.00 2.67
461 462 8.188799 GGGAAATAAAGTAAAGTGCTACAATCC 58.811 37.037 0.00 0.00 0.00 3.01
462 463 8.188799 GGAAATAAAGTAAAGTGCTACAATCCC 58.811 37.037 0.00 0.00 0.00 3.85
463 464 8.644374 AAATAAAGTAAAGTGCTACAATCCCA 57.356 30.769 0.00 0.00 0.00 4.37
464 465 8.823220 AATAAAGTAAAGTGCTACAATCCCAT 57.177 30.769 0.00 0.00 0.00 4.00
465 466 6.515272 AAAGTAAAGTGCTACAATCCCATG 57.485 37.500 0.00 0.00 0.00 3.66
466 467 5.435686 AGTAAAGTGCTACAATCCCATGA 57.564 39.130 0.00 0.00 0.00 3.07
467 468 5.186198 AGTAAAGTGCTACAATCCCATGAC 58.814 41.667 0.00 0.00 0.00 3.06
468 469 2.717639 AGTGCTACAATCCCATGACC 57.282 50.000 0.00 0.00 0.00 4.02
469 470 1.212935 AGTGCTACAATCCCATGACCC 59.787 52.381 0.00 0.00 0.00 4.46
470 471 0.550914 TGCTACAATCCCATGACCCC 59.449 55.000 0.00 0.00 0.00 4.95
471 472 0.550914 GCTACAATCCCATGACCCCA 59.449 55.000 0.00 0.00 0.00 4.96
472 473 1.145738 GCTACAATCCCATGACCCCAT 59.854 52.381 0.00 0.00 0.00 4.00
473 474 2.375174 GCTACAATCCCATGACCCCATA 59.625 50.000 0.00 0.00 0.00 2.74
474 475 3.010584 GCTACAATCCCATGACCCCATAT 59.989 47.826 0.00 0.00 0.00 1.78
475 476 3.814504 ACAATCCCATGACCCCATATC 57.185 47.619 0.00 0.00 0.00 1.63
476 477 2.379907 ACAATCCCATGACCCCATATCC 59.620 50.000 0.00 0.00 0.00 2.59
477 478 2.379567 CAATCCCATGACCCCATATCCA 59.620 50.000 0.00 0.00 0.00 3.41
478 479 2.456496 TCCCATGACCCCATATCCAT 57.544 50.000 0.00 0.00 0.00 3.41
479 480 2.278245 TCCCATGACCCCATATCCATC 58.722 52.381 0.00 0.00 0.00 3.51
480 481 2.157801 TCCCATGACCCCATATCCATCT 60.158 50.000 0.00 0.00 0.00 2.90
481 482 3.080463 TCCCATGACCCCATATCCATCTA 59.920 47.826 0.00 0.00 0.00 1.98
482 483 4.050037 CCCATGACCCCATATCCATCTAT 58.950 47.826 0.00 0.00 0.00 1.98
483 484 4.103785 CCCATGACCCCATATCCATCTATC 59.896 50.000 0.00 0.00 0.00 2.08
484 485 4.723285 CCATGACCCCATATCCATCTATCA 59.277 45.833 0.00 0.00 0.00 2.15
485 486 5.163227 CCATGACCCCATATCCATCTATCAG 60.163 48.000 0.00 0.00 0.00 2.90
486 487 3.776969 TGACCCCATATCCATCTATCAGC 59.223 47.826 0.00 0.00 0.00 4.26
487 488 3.776969 GACCCCATATCCATCTATCAGCA 59.223 47.826 0.00 0.00 0.00 4.41
488 489 4.378047 ACCCCATATCCATCTATCAGCAT 58.622 43.478 0.00 0.00 0.00 3.79
489 490 4.411540 ACCCCATATCCATCTATCAGCATC 59.588 45.833 0.00 0.00 0.00 3.91
490 491 4.202440 CCCCATATCCATCTATCAGCATCC 60.202 50.000 0.00 0.00 0.00 3.51
491 492 4.659368 CCCATATCCATCTATCAGCATCCT 59.341 45.833 0.00 0.00 0.00 3.24
492 493 5.132312 CCCATATCCATCTATCAGCATCCTT 59.868 44.000 0.00 0.00 0.00 3.36
493 494 6.353689 CCCATATCCATCTATCAGCATCCTTT 60.354 42.308 0.00 0.00 0.00 3.11
494 495 7.117397 CCATATCCATCTATCAGCATCCTTTT 58.883 38.462 0.00 0.00 0.00 2.27
495 496 7.614583 CCATATCCATCTATCAGCATCCTTTTT 59.385 37.037 0.00 0.00 0.00 1.94
518 519 6.567602 TTTCCCAAAGAAAAATTCCTTCCA 57.432 33.333 0.00 0.00 41.56 3.53
519 520 5.806654 TCCCAAAGAAAAATTCCTTCCAG 57.193 39.130 0.00 0.00 0.00 3.86
520 521 5.463154 TCCCAAAGAAAAATTCCTTCCAGA 58.537 37.500 0.00 0.00 0.00 3.86
521 522 6.084060 TCCCAAAGAAAAATTCCTTCCAGAT 58.916 36.000 0.00 0.00 0.00 2.90
522 523 6.211384 TCCCAAAGAAAAATTCCTTCCAGATC 59.789 38.462 0.00 0.00 0.00 2.75
523 524 6.212187 CCCAAAGAAAAATTCCTTCCAGATCT 59.788 38.462 0.00 0.00 0.00 2.75
524 525 7.318893 CCAAAGAAAAATTCCTTCCAGATCTC 58.681 38.462 0.00 0.00 0.00 2.75
525 526 7.318893 CAAAGAAAAATTCCTTCCAGATCTCC 58.681 38.462 0.00 0.00 0.00 3.71
526 527 6.400096 AGAAAAATTCCTTCCAGATCTCCT 57.600 37.500 0.00 0.00 0.00 3.69
527 528 6.422333 AGAAAAATTCCTTCCAGATCTCCTC 58.578 40.000 0.00 0.00 0.00 3.71
528 529 4.787135 AAATTCCTTCCAGATCTCCTCC 57.213 45.455 0.00 0.00 0.00 4.30
529 530 2.948889 TTCCTTCCAGATCTCCTCCA 57.051 50.000 0.00 0.00 0.00 3.86
530 531 2.948889 TCCTTCCAGATCTCCTCCAA 57.051 50.000 0.00 0.00 0.00 3.53
531 532 3.205519 TCCTTCCAGATCTCCTCCAAA 57.794 47.619 0.00 0.00 0.00 3.28
532 533 3.110705 TCCTTCCAGATCTCCTCCAAAG 58.889 50.000 0.00 0.00 0.00 2.77
533 534 2.843113 CCTTCCAGATCTCCTCCAAAGT 59.157 50.000 0.00 0.00 0.00 2.66
534 535 3.265479 CCTTCCAGATCTCCTCCAAAGTT 59.735 47.826 0.00 0.00 0.00 2.66
535 536 4.512484 CTTCCAGATCTCCTCCAAAGTTC 58.488 47.826 0.00 0.00 0.00 3.01
536 537 2.840651 TCCAGATCTCCTCCAAAGTTCC 59.159 50.000 0.00 0.00 0.00 3.62
537 538 2.092699 CCAGATCTCCTCCAAAGTTCCC 60.093 54.545 0.00 0.00 0.00 3.97
538 539 2.092699 CAGATCTCCTCCAAAGTTCCCC 60.093 54.545 0.00 0.00 0.00 4.81
539 540 1.916181 GATCTCCTCCAAAGTTCCCCA 59.084 52.381 0.00 0.00 0.00 4.96
540 541 2.059756 TCTCCTCCAAAGTTCCCCAT 57.940 50.000 0.00 0.00 0.00 4.00
541 542 2.358258 TCTCCTCCAAAGTTCCCCATT 58.642 47.619 0.00 0.00 0.00 3.16
542 543 3.537337 TCTCCTCCAAAGTTCCCCATTA 58.463 45.455 0.00 0.00 0.00 1.90
543 544 3.523564 TCTCCTCCAAAGTTCCCCATTAG 59.476 47.826 0.00 0.00 0.00 1.73
544 545 2.580783 TCCTCCAAAGTTCCCCATTAGG 59.419 50.000 0.00 0.00 0.00 2.69
545 546 2.580783 CCTCCAAAGTTCCCCATTAGGA 59.419 50.000 0.00 0.00 38.24 2.94
546 547 3.621558 CTCCAAAGTTCCCCATTAGGAC 58.378 50.000 0.00 0.00 38.24 3.85
547 548 3.265489 TCCAAAGTTCCCCATTAGGACT 58.735 45.455 0.00 0.00 38.24 3.85
548 549 3.265995 TCCAAAGTTCCCCATTAGGACTC 59.734 47.826 0.00 0.00 38.24 3.36
549 550 3.621558 CAAAGTTCCCCATTAGGACTCC 58.378 50.000 0.00 0.00 38.24 3.85
550 551 1.894699 AGTTCCCCATTAGGACTCCC 58.105 55.000 0.00 0.00 38.24 4.30
551 552 0.468648 GTTCCCCATTAGGACTCCCG 59.531 60.000 0.00 0.00 38.24 5.14
552 553 0.340558 TTCCCCATTAGGACTCCCGA 59.659 55.000 0.00 0.00 38.24 5.14
553 554 0.340558 TCCCCATTAGGACTCCCGAA 59.659 55.000 0.00 0.00 38.24 4.30
554 555 1.061657 TCCCCATTAGGACTCCCGAAT 60.062 52.381 0.00 0.00 38.14 3.34
555 556 1.348036 CCCCATTAGGACTCCCGAATC 59.652 57.143 0.00 0.00 35.90 2.52
556 557 1.348036 CCCATTAGGACTCCCGAATCC 59.652 57.143 0.00 0.00 35.90 3.01
557 558 1.348036 CCATTAGGACTCCCGAATCCC 59.652 57.143 0.00 0.00 35.90 3.85
558 559 2.330216 CATTAGGACTCCCGAATCCCT 58.670 52.381 0.00 0.00 35.90 4.20
559 560 3.507411 CATTAGGACTCCCGAATCCCTA 58.493 50.000 0.00 0.00 35.90 3.53
560 561 3.917324 TTAGGACTCCCGAATCCCTAT 57.083 47.619 0.00 0.00 35.38 2.57
561 562 2.797285 AGGACTCCCGAATCCCTATT 57.203 50.000 0.00 0.00 35.38 1.73
562 563 2.610873 AGGACTCCCGAATCCCTATTC 58.389 52.381 0.00 0.00 38.53 1.75
563 564 1.624312 GGACTCCCGAATCCCTATTCC 59.376 57.143 0.00 0.00 38.66 3.01
564 565 1.624312 GACTCCCGAATCCCTATTCCC 59.376 57.143 0.00 0.00 38.66 3.97
565 566 1.061657 ACTCCCGAATCCCTATTCCCA 60.062 52.381 0.00 0.00 38.66 4.37
566 567 1.348036 CTCCCGAATCCCTATTCCCAC 59.652 57.143 0.00 0.00 38.66 4.61
567 568 1.061657 TCCCGAATCCCTATTCCCACT 60.062 52.381 0.00 0.00 38.66 4.00
571 572 3.073062 CCGAATCCCTATTCCCACTCATT 59.927 47.826 0.00 0.00 38.66 2.57
584 585 3.057736 CCCACTCATTCACAAGCTTCAAG 60.058 47.826 0.00 0.00 0.00 3.02
600 601 2.191400 TCAAGATCTCCCAACTCCCAG 58.809 52.381 0.00 0.00 0.00 4.45
635 639 3.420482 GCCTACAGCCCCACCCAT 61.420 66.667 0.00 0.00 34.35 4.00
670 674 0.109723 TAGCCACCACAACTTCACCC 59.890 55.000 0.00 0.00 0.00 4.61
675 679 0.544697 ACCACAACTTCACCCGAGTT 59.455 50.000 0.00 0.00 37.82 3.01
678 682 3.006672 CAACTTCACCCGAGTTGCT 57.993 52.632 4.31 0.00 45.02 3.91
679 683 0.588252 CAACTTCACCCGAGTTGCTG 59.412 55.000 4.31 0.00 45.02 4.41
689 693 1.601759 GAGTTGCTGCCTGCTTCCA 60.602 57.895 0.00 0.00 43.37 3.53
692 696 3.474486 TTGCTGCCTGCTTCCACGA 62.474 57.895 0.00 0.00 43.37 4.35
737 747 1.305930 TGAATCTGCTGCTGCTGCTG 61.306 55.000 27.67 26.32 40.48 4.41
757 771 1.365699 CTACCGCCGTTACAATGCTT 58.634 50.000 0.00 0.00 0.00 3.91
1026 1072 1.200760 AGCTAGTGGTCACCATGGCA 61.201 55.000 13.04 0.00 35.28 4.92
1041 1087 4.643387 GCACTCCGGCCACTGGTT 62.643 66.667 2.24 0.00 0.00 3.67
1121 1167 1.908340 ATGGAGGAGCAGCACAGGAC 61.908 60.000 0.00 0.00 0.00 3.85
1476 1522 5.630121 ACATTCTTGGTGTCCAATCAGTTA 58.370 37.500 1.58 0.00 43.07 2.24
1485 1534 2.237392 GTCCAATCAGTTAGGGCAGACT 59.763 50.000 0.00 0.00 0.00 3.24
1548 1597 2.238521 GACCCACAAGAAATTGCCAGA 58.761 47.619 0.00 0.00 0.00 3.86
1610 1659 2.440409 ACTTGGTCAAGCTAGCAATGG 58.560 47.619 18.83 2.99 41.99 3.16
2010 2068 4.372656 GCGCAGATAGAACCTACAATCTT 58.627 43.478 0.30 0.00 0.00 2.40
2137 2195 2.107953 GATGCCGTGGCTCTCCTC 59.892 66.667 12.84 0.00 42.51 3.71
2200 2264 1.826385 CGTGGAAGAATGGAAGGCTT 58.174 50.000 0.00 0.00 0.00 4.35
2379 2443 6.237901 ACTATGGATCGCAAATGCCTTTATA 58.762 36.000 0.00 0.00 37.91 0.98
2442 2506 5.464722 ACATATTTTCAGTGAGCTAGCATCG 59.535 40.000 18.83 0.22 0.00 3.84
2485 2549 4.860022 AGAGGAATTTAAGGGTGACATGG 58.140 43.478 0.00 0.00 0.00 3.66
2592 2658 1.132453 GTCGTTGCAATTAAGGAGCCC 59.868 52.381 0.59 0.00 0.00 5.19
2908 2992 1.588674 TAACCTGCAAGTGTTGGACG 58.411 50.000 6.27 0.00 31.41 4.79
3125 3212 3.866703 TGGTCTAAACATTGGTGGTCA 57.133 42.857 0.00 0.00 0.00 4.02
3132 3219 3.788227 AACATTGGTGGTCAGCTAGAA 57.212 42.857 0.00 0.00 0.00 2.10
3165 3252 6.944862 AGGTAGAGAATGTTGAAAAAGCAGAT 59.055 34.615 0.00 0.00 0.00 2.90
3169 3256 5.603596 AGAATGTTGAAAAAGCAGATGCAA 58.396 33.333 7.68 0.00 45.16 4.08
3351 3543 1.207488 ATGGTGGGCTGCAGGTTCTA 61.207 55.000 17.12 0.00 0.00 2.10
3579 3771 4.415881 TCCTGTGCTTGAGAAGTTGTTA 57.584 40.909 0.00 0.00 0.00 2.41
3620 3812 0.928229 GTAGCATTACCCGAAGCACG 59.072 55.000 0.00 0.00 42.18 5.34
3693 3885 3.344515 GTTTCCTGCCCTAAAGGTACTG 58.655 50.000 0.00 0.00 40.86 2.74
3741 3933 1.833630 AGATGGGATGCAGTCGAAGAA 59.166 47.619 0.00 0.00 39.69 2.52
3864 4056 5.057149 CCATGTAGTGAAGGTGGTTATAGC 58.943 45.833 0.00 0.00 0.00 2.97
4409 4677 3.036819 TGACTGGATATGCAGAAGCTCT 58.963 45.455 28.65 6.85 42.74 4.09
4689 4957 6.769822 ACTTTTGTCCATGCCTAGAATATCTG 59.230 38.462 0.00 0.00 0.00 2.90
4691 4959 5.474578 TGTCCATGCCTAGAATATCTGAC 57.525 43.478 0.00 0.00 0.00 3.51
5302 5596 5.951204 TGCAGTCATCCATCCCATTAAATA 58.049 37.500 0.00 0.00 0.00 1.40
5319 5619 1.882912 ATATACCACGCCAGCATGTG 58.117 50.000 0.00 0.00 35.87 3.21
5327 5627 1.066502 ACGCCAGCATGTGTGTACATA 60.067 47.619 0.00 0.00 45.53 2.29
5328 5628 1.327460 CGCCAGCATGTGTGTACATAC 59.673 52.381 15.23 15.23 45.53 2.39
5347 5670 6.725246 ACATACTTGCAGCGGTATAAATTTC 58.275 36.000 9.58 0.00 0.00 2.17
5370 5699 6.682746 TCCATGTTACATTATTTTGTGCGTT 58.317 32.000 0.00 0.00 0.00 4.84
5372 5701 7.327275 TCCATGTTACATTATTTTGTGCGTTTC 59.673 33.333 0.00 0.00 0.00 2.78
5377 5706 6.747659 ACATTATTTTGTGCGTTTCTGTTC 57.252 33.333 0.00 0.00 0.00 3.18
5379 5708 6.417635 ACATTATTTTGTGCGTTTCTGTTCTG 59.582 34.615 0.00 0.00 0.00 3.02
5380 5709 4.630894 ATTTTGTGCGTTTCTGTTCTGA 57.369 36.364 0.00 0.00 0.00 3.27
5409 5739 6.429385 TGTCATTTGTGATATGTGCAGTAACA 59.571 34.615 0.00 0.00 0.00 2.41
5432 5771 4.396166 AGCATTTAAACCGAAGACATGGAG 59.604 41.667 0.00 0.00 0.00 3.86
5433 5772 4.156008 GCATTTAAACCGAAGACATGGAGT 59.844 41.667 0.00 0.00 0.00 3.85
5485 5827 1.293498 GCCACTCGAGAAGCCAAGA 59.707 57.895 21.68 0.00 0.00 3.02
5582 6000 6.398095 AGATTATGTCGTGACTGTGATCAAA 58.602 36.000 0.00 0.00 0.00 2.69
5608 6044 7.345914 AGCCTCTACCTAGTTGAGATATTTGTT 59.654 37.037 7.61 0.00 37.54 2.83
5644 6080 4.329392 GAATTTCCCCGGTTCAGTAGAAA 58.671 43.478 0.00 0.00 35.08 2.52
5710 6148 7.530010 TGTATCTATCTGTTTTTGCTTTGCTC 58.470 34.615 0.00 0.00 0.00 4.26
5739 6177 4.074970 CTGACAAGACACTGGCCTTTAAT 58.925 43.478 3.32 0.00 0.00 1.40
5740 6178 3.820467 TGACAAGACACTGGCCTTTAATG 59.180 43.478 3.32 0.00 0.00 1.90
5789 6235 5.394553 GGCTTTATCTGTGGATTTTCTTGGG 60.395 44.000 0.00 0.00 33.71 4.12
5811 6257 3.073650 GTGATAGGCCTGATCCCTGATTT 59.926 47.826 17.99 0.00 33.88 2.17
5813 6259 2.744352 AGGCCTGATCCCTGATTTTC 57.256 50.000 3.11 0.00 0.00 2.29
5814 6260 2.212420 AGGCCTGATCCCTGATTTTCT 58.788 47.619 3.11 0.00 0.00 2.52
5815 6261 2.584498 AGGCCTGATCCCTGATTTTCTT 59.416 45.455 3.11 0.00 0.00 2.52
5816 6262 2.692041 GGCCTGATCCCTGATTTTCTTG 59.308 50.000 0.00 0.00 0.00 3.02
5817 6263 3.359950 GCCTGATCCCTGATTTTCTTGT 58.640 45.455 0.00 0.00 0.00 3.16
5929 6420 3.305629 GTCGAGCATCTCTGAATCAACAC 59.694 47.826 0.00 0.00 0.00 3.32
5936 6427 3.107601 TCTCTGAATCAACACCCTAGGG 58.892 50.000 27.36 27.36 42.03 3.53
5996 6488 0.468400 GGCCCTTTGGGTGTGTACAA 60.468 55.000 0.00 0.00 46.51 2.41
6015 6507 3.009473 ACAACATTCCTGTCATGTAGCCT 59.991 43.478 0.00 0.00 33.54 4.58
6024 6516 4.159693 CCTGTCATGTAGCCTAGTGTTGTA 59.840 45.833 0.00 0.00 0.00 2.41
6041 6541 8.067751 AGTGTTGTAGTATCTGAATAGCTTGA 57.932 34.615 0.00 0.00 0.00 3.02
6044 6544 8.311109 TGTTGTAGTATCTGAATAGCTTGAACA 58.689 33.333 0.00 0.00 0.00 3.18
6075 6579 0.923358 TGTCCACCAAAAGACTGGGT 59.077 50.000 0.00 0.00 41.16 4.51
6169 6699 4.326826 TCAACCACTCAGACATGGATTTC 58.673 43.478 0.00 0.00 39.46 2.17
6198 6728 2.261671 GCAAAGCAGCAGCAGCAT 59.738 55.556 12.92 0.00 45.49 3.79
6202 6732 1.595993 AAAGCAGCAGCAGCATCAGG 61.596 55.000 12.92 0.00 45.49 3.86
6203 6733 2.750637 GCAGCAGCAGCATCAGGT 60.751 61.111 4.63 0.00 45.49 4.00
6205 6735 1.376812 CAGCAGCAGCATCAGGTGA 60.377 57.895 3.17 0.00 45.95 4.02
6206 6736 0.748367 CAGCAGCAGCATCAGGTGAT 60.748 55.000 3.17 0.00 45.95 3.06
6207 6737 0.034380 AGCAGCAGCATCAGGTGATT 60.034 50.000 3.17 0.00 45.95 2.57
6208 6738 0.815734 GCAGCAGCATCAGGTGATTT 59.184 50.000 0.00 0.00 45.95 2.17
6209 6739 1.203994 GCAGCAGCATCAGGTGATTTT 59.796 47.619 0.00 0.00 45.95 1.82
6295 6836 4.489682 CGATTCATGTTTCATTTTGCAGCG 60.490 41.667 0.00 0.00 0.00 5.18
6340 6885 8.070171 CGGAAGAATCAACATACAATGGTTATC 58.930 37.037 0.00 0.00 33.60 1.75
6359 6905 6.389906 GTTATCCAAACTCATCCCAAACAAG 58.610 40.000 0.00 0.00 0.00 3.16
6362 6908 2.270352 AACTCATCCCAAACAAGCGA 57.730 45.000 0.00 0.00 0.00 4.93
6391 6937 2.632512 TCCAAGGAACCCTGCAAATTTC 59.367 45.455 0.00 0.00 32.13 2.17
6392 6938 2.368221 CCAAGGAACCCTGCAAATTTCA 59.632 45.455 0.00 0.00 32.13 2.69
6403 6949 3.794717 TGCAAATTTCACAGCACAATGT 58.205 36.364 0.00 0.00 31.05 2.71
6407 6953 5.669357 GCAAATTTCACAGCACAATGTATGC 60.669 40.000 0.00 0.00 43.74 3.14
6412 6958 3.934579 TCACAGCACAATGTATGCAGTAG 59.065 43.478 0.00 0.00 45.92 2.57
6433 6979 6.719370 AGTAGACATTAATTTTGAACCCTGCA 59.281 34.615 0.00 0.00 0.00 4.41
6436 6982 7.452562 AGACATTAATTTTGAACCCTGCAAAT 58.547 30.769 0.00 0.00 35.41 2.32
6444 6990 4.255833 TGAACCCTGCAAATTTCATGTC 57.744 40.909 0.00 0.00 0.00 3.06
6455 7001 8.883954 TGCAAATTTCATGTCTCATTTTGTAA 57.116 26.923 0.00 0.00 0.00 2.41
6483 7029 1.661341 CAAGTAGCATGGAGCCACTC 58.339 55.000 0.00 0.00 44.66 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.823873 TGGTACAAATTTAGTGGTGCTGG 59.176 43.478 0.00 0.00 31.92 4.85
1 2 4.277174 TGTGGTACAAATTTAGTGGTGCTG 59.723 41.667 0.00 0.00 44.16 4.41
3 4 4.839668 TGTGGTACAAATTTAGTGGTGC 57.160 40.909 0.00 0.00 44.16 5.01
4 5 5.160641 GCATGTGGTACAAATTTAGTGGTG 58.839 41.667 0.00 0.00 44.16 4.17
5 6 4.830046 TGCATGTGGTACAAATTTAGTGGT 59.170 37.500 0.00 0.00 44.16 4.16
6 7 5.384063 TGCATGTGGTACAAATTTAGTGG 57.616 39.130 0.00 0.00 44.16 4.00
7 8 8.243426 AGTAATGCATGTGGTACAAATTTAGTG 58.757 33.333 0.00 0.00 44.16 2.74
8 9 8.243426 CAGTAATGCATGTGGTACAAATTTAGT 58.757 33.333 0.00 0.00 44.16 2.24
9 10 7.220683 GCAGTAATGCATGTGGTACAAATTTAG 59.779 37.037 10.86 0.00 31.16 1.85
10 11 7.032580 GCAGTAATGCATGTGGTACAAATTTA 58.967 34.615 10.86 0.00 31.16 1.40
11 12 5.868801 GCAGTAATGCATGTGGTACAAATTT 59.131 36.000 10.86 0.00 31.16 1.82
12 13 5.047448 TGCAGTAATGCATGTGGTACAAATT 60.047 36.000 14.87 0.00 39.43 1.82
13 14 4.462132 TGCAGTAATGCATGTGGTACAAAT 59.538 37.500 14.87 0.00 39.43 2.32
14 15 3.823304 TGCAGTAATGCATGTGGTACAAA 59.177 39.130 14.87 0.00 39.43 2.83
15 16 3.416156 TGCAGTAATGCATGTGGTACAA 58.584 40.909 14.87 0.00 39.43 2.41
16 17 3.064900 TGCAGTAATGCATGTGGTACA 57.935 42.857 14.87 0.00 40.23 2.90
25 26 2.507484 AGCTTGAAGTGCAGTAATGCA 58.493 42.857 14.87 14.87 43.22 3.96
26 27 3.565905 AAGCTTGAAGTGCAGTAATGC 57.434 42.857 8.51 8.51 0.00 3.56
27 28 5.522456 TGAAAAGCTTGAAGTGCAGTAATG 58.478 37.500 0.00 0.00 0.00 1.90
28 29 5.772825 TGAAAAGCTTGAAGTGCAGTAAT 57.227 34.783 0.00 0.00 0.00 1.89
29 30 5.105957 TGTTGAAAAGCTTGAAGTGCAGTAA 60.106 36.000 0.00 0.00 0.00 2.24
30 31 4.397730 TGTTGAAAAGCTTGAAGTGCAGTA 59.602 37.500 0.00 0.00 0.00 2.74
31 32 3.193267 TGTTGAAAAGCTTGAAGTGCAGT 59.807 39.130 0.00 0.00 0.00 4.40
32 33 3.772932 TGTTGAAAAGCTTGAAGTGCAG 58.227 40.909 0.00 0.00 0.00 4.41
33 34 3.193267 ACTGTTGAAAAGCTTGAAGTGCA 59.807 39.130 0.00 0.00 0.00 4.57
34 35 3.774066 ACTGTTGAAAAGCTTGAAGTGC 58.226 40.909 0.00 0.00 0.00 4.40
35 36 4.800471 GGAACTGTTGAAAAGCTTGAAGTG 59.200 41.667 0.00 0.00 0.00 3.16
36 37 4.706962 AGGAACTGTTGAAAAGCTTGAAGT 59.293 37.500 0.00 0.00 37.18 3.01
37 38 5.254339 AGGAACTGTTGAAAAGCTTGAAG 57.746 39.130 0.00 0.00 37.18 3.02
38 39 5.659440 AAGGAACTGTTGAAAAGCTTGAA 57.341 34.783 0.00 0.00 40.86 2.69
39 40 6.767524 TTAAGGAACTGTTGAAAAGCTTGA 57.232 33.333 0.00 0.00 40.86 3.02
40 41 7.922811 AGATTTAAGGAACTGTTGAAAAGCTTG 59.077 33.333 0.00 0.00 40.86 4.01
41 42 8.011844 AGATTTAAGGAACTGTTGAAAAGCTT 57.988 30.769 0.00 0.00 40.86 3.74
42 43 7.588497 AGATTTAAGGAACTGTTGAAAAGCT 57.412 32.000 0.00 0.00 40.86 3.74
43 44 9.914131 ATTAGATTTAAGGAACTGTTGAAAAGC 57.086 29.630 0.00 0.00 40.86 3.51
45 46 9.691362 GCATTAGATTTAAGGAACTGTTGAAAA 57.309 29.630 0.00 0.00 40.86 2.29
46 47 8.020819 CGCATTAGATTTAAGGAACTGTTGAAA 58.979 33.333 0.00 0.00 40.86 2.69
47 48 7.526608 CGCATTAGATTTAAGGAACTGTTGAA 58.473 34.615 0.00 0.00 40.86 2.69
48 49 6.403200 GCGCATTAGATTTAAGGAACTGTTGA 60.403 38.462 0.30 0.00 40.86 3.18
49 50 5.739161 GCGCATTAGATTTAAGGAACTGTTG 59.261 40.000 0.30 0.00 40.86 3.33
50 51 5.163652 GGCGCATTAGATTTAAGGAACTGTT 60.164 40.000 10.83 0.00 40.86 3.16
51 52 4.335594 GGCGCATTAGATTTAAGGAACTGT 59.664 41.667 10.83 0.00 40.86 3.55
52 53 4.576463 AGGCGCATTAGATTTAAGGAACTG 59.424 41.667 10.83 0.00 40.86 3.16
53 54 8.333898 GCAAGGCGCATTAGATTTAAGGAACT 62.334 42.308 7.11 0.00 40.83 3.01
54 55 5.273944 CAAGGCGCATTAGATTTAAGGAAC 58.726 41.667 7.11 0.00 0.00 3.62
55 56 4.202010 GCAAGGCGCATTAGATTTAAGGAA 60.202 41.667 7.11 0.00 41.79 3.36
56 57 3.315191 GCAAGGCGCATTAGATTTAAGGA 59.685 43.478 7.11 0.00 41.79 3.36
57 58 3.632189 GCAAGGCGCATTAGATTTAAGG 58.368 45.455 7.11 0.00 41.79 2.69
70 71 2.098117 AGTCATCTTAAATGCAAGGCGC 59.902 45.455 0.00 0.00 42.89 6.53
71 72 5.484173 TTAGTCATCTTAAATGCAAGGCG 57.516 39.130 0.00 0.00 0.00 5.52
72 73 6.211515 CCATTAGTCATCTTAAATGCAAGGC 58.788 40.000 0.00 0.00 0.00 4.35
73 74 6.547141 TCCCATTAGTCATCTTAAATGCAAGG 59.453 38.462 0.00 0.00 0.00 3.61
74 75 7.500227 TCTCCCATTAGTCATCTTAAATGCAAG 59.500 37.037 0.00 0.00 0.00 4.01
75 76 7.345691 TCTCCCATTAGTCATCTTAAATGCAA 58.654 34.615 0.00 0.00 0.00 4.08
76 77 6.899089 TCTCCCATTAGTCATCTTAAATGCA 58.101 36.000 0.00 0.00 0.00 3.96
77 78 6.072783 GCTCTCCCATTAGTCATCTTAAATGC 60.073 42.308 0.00 0.00 0.00 3.56
78 79 6.994496 TGCTCTCCCATTAGTCATCTTAAATG 59.006 38.462 0.00 0.00 0.00 2.32
79 80 7.141758 TGCTCTCCCATTAGTCATCTTAAAT 57.858 36.000 0.00 0.00 0.00 1.40
80 81 6.560003 TGCTCTCCCATTAGTCATCTTAAA 57.440 37.500 0.00 0.00 0.00 1.52
81 82 6.239714 GGATGCTCTCCCATTAGTCATCTTAA 60.240 42.308 0.00 0.00 38.19 1.85
82 83 5.247110 GGATGCTCTCCCATTAGTCATCTTA 59.753 44.000 0.00 0.00 38.19 2.10
83 84 4.041444 GGATGCTCTCCCATTAGTCATCTT 59.959 45.833 0.00 0.00 38.19 2.40
84 85 3.582208 GGATGCTCTCCCATTAGTCATCT 59.418 47.826 0.00 0.00 38.19 2.90
85 86 3.326006 TGGATGCTCTCCCATTAGTCATC 59.674 47.826 3.80 0.00 44.23 2.92
86 87 3.321039 TGGATGCTCTCCCATTAGTCAT 58.679 45.455 3.80 0.00 44.23 3.06
87 88 2.763039 TGGATGCTCTCCCATTAGTCA 58.237 47.619 3.80 0.00 44.23 3.41
88 89 3.389329 TCTTGGATGCTCTCCCATTAGTC 59.611 47.826 3.80 0.00 44.23 2.59
89 90 3.387962 TCTTGGATGCTCTCCCATTAGT 58.612 45.455 3.80 0.00 44.23 2.24
90 91 4.637387 ATCTTGGATGCTCTCCCATTAG 57.363 45.455 3.80 0.00 44.23 1.73
91 92 6.708885 ATTATCTTGGATGCTCTCCCATTA 57.291 37.500 3.80 0.00 44.23 1.90
92 93 5.595814 ATTATCTTGGATGCTCTCCCATT 57.404 39.130 3.80 0.00 44.23 3.16
93 94 5.595814 AATTATCTTGGATGCTCTCCCAT 57.404 39.130 3.80 0.00 44.23 4.00
94 95 5.393068 AAATTATCTTGGATGCTCTCCCA 57.607 39.130 3.80 0.00 44.23 4.37
95 96 6.721704 AAAAATTATCTTGGATGCTCTCCC 57.278 37.500 3.80 0.00 44.23 4.30
167 168 9.500785 GGAAGAAATTCCAAATGGTTTTCATTA 57.499 29.630 21.42 0.00 44.68 1.90
169 170 7.984422 GGAAGAAATTCCAAATGGTTTTCAT 57.016 32.000 21.42 14.98 40.79 2.57
182 183 4.514401 ACATACGGACTGGAAGAAATTCC 58.486 43.478 0.00 0.00 41.48 3.01
183 184 6.761714 ACATACATACGGACTGGAAGAAATTC 59.238 38.462 0.00 0.00 37.43 2.17
184 185 6.650120 ACATACATACGGACTGGAAGAAATT 58.350 36.000 0.00 0.00 37.43 1.82
185 186 6.235231 ACATACATACGGACTGGAAGAAAT 57.765 37.500 0.00 0.00 37.43 2.17
186 187 5.670792 ACATACATACGGACTGGAAGAAA 57.329 39.130 0.00 0.00 37.43 2.52
187 188 6.322969 ACATACATACATACGGACTGGAAGAA 59.677 38.462 0.00 0.00 37.43 2.52
188 189 5.831525 ACATACATACATACGGACTGGAAGA 59.168 40.000 0.00 0.00 37.43 2.87
189 190 6.085555 ACATACATACATACGGACTGGAAG 57.914 41.667 0.00 0.00 42.29 3.46
190 191 7.361457 CGATACATACATACATACGGACTGGAA 60.361 40.741 0.00 0.00 0.00 3.53
191 192 6.093082 CGATACATACATACATACGGACTGGA 59.907 42.308 0.00 0.00 0.00 3.86
192 193 6.255950 CGATACATACATACATACGGACTGG 58.744 44.000 0.00 0.00 0.00 4.00
193 194 5.737757 GCGATACATACATACATACGGACTG 59.262 44.000 0.00 0.00 0.00 3.51
194 195 5.163683 GGCGATACATACATACATACGGACT 60.164 44.000 0.00 0.00 0.00 3.85
195 196 5.032863 GGCGATACATACATACATACGGAC 58.967 45.833 0.00 0.00 0.00 4.79
196 197 4.701171 TGGCGATACATACATACATACGGA 59.299 41.667 0.00 0.00 0.00 4.69
197 198 4.796830 GTGGCGATACATACATACATACGG 59.203 45.833 0.00 0.00 0.00 4.02
198 199 5.285370 GTGTGGCGATACATACATACATACG 59.715 44.000 0.00 0.00 33.33 3.06
199 200 5.285370 CGTGTGGCGATACATACATACATAC 59.715 44.000 0.00 0.00 44.77 2.39
200 201 5.048573 ACGTGTGGCGATACATACATACATA 60.049 40.000 0.00 0.00 44.77 2.29
201 202 4.234574 CGTGTGGCGATACATACATACAT 58.765 43.478 0.00 0.00 44.77 2.29
202 203 3.067040 ACGTGTGGCGATACATACATACA 59.933 43.478 0.00 0.00 44.77 2.29
203 204 3.635331 ACGTGTGGCGATACATACATAC 58.365 45.455 0.00 0.00 44.77 2.39
204 205 3.994204 ACGTGTGGCGATACATACATA 57.006 42.857 0.00 0.00 44.77 2.29
205 206 2.882927 ACGTGTGGCGATACATACAT 57.117 45.000 0.00 0.00 44.77 2.29
206 207 2.684374 AGTACGTGTGGCGATACATACA 59.316 45.455 0.00 0.00 44.77 2.29
207 208 3.040795 CAGTACGTGTGGCGATACATAC 58.959 50.000 0.00 0.00 44.77 2.39
208 209 2.033675 CCAGTACGTGTGGCGATACATA 59.966 50.000 0.00 0.00 44.77 2.29
209 210 1.202371 CCAGTACGTGTGGCGATACAT 60.202 52.381 0.00 0.00 44.77 2.29
210 211 0.171679 CCAGTACGTGTGGCGATACA 59.828 55.000 0.00 0.00 44.77 2.29
211 212 2.953669 CCAGTACGTGTGGCGATAC 58.046 57.895 0.00 0.00 44.77 2.24
217 218 1.271379 TGTAAGAGCCAGTACGTGTGG 59.729 52.381 13.17 13.17 38.21 4.17
218 219 2.717580 TGTAAGAGCCAGTACGTGTG 57.282 50.000 0.00 0.00 0.00 3.82
219 220 5.593679 AATATGTAAGAGCCAGTACGTGT 57.406 39.130 0.00 0.00 0.00 4.49
220 221 8.589335 AAATAATATGTAAGAGCCAGTACGTG 57.411 34.615 0.00 0.00 0.00 4.49
221 222 9.609346 AAAAATAATATGTAAGAGCCAGTACGT 57.391 29.630 0.00 0.00 0.00 3.57
248 249 9.823647 GAGTCTCTAAAAATATGACTGGATCAA 57.176 33.333 0.00 0.00 41.93 2.57
249 250 8.424918 GGAGTCTCTAAAAATATGACTGGATCA 58.575 37.037 0.00 0.00 43.13 2.92
250 251 8.646900 AGGAGTCTCTAAAAATATGACTGGATC 58.353 37.037 0.00 0.00 38.00 3.36
251 252 8.560124 AGGAGTCTCTAAAAATATGACTGGAT 57.440 34.615 0.00 0.00 38.00 3.41
252 253 7.979786 AGGAGTCTCTAAAAATATGACTGGA 57.020 36.000 0.00 0.00 38.00 3.86
280 281 6.264841 AGCAGGCAATTTTCAAAACAAAAA 57.735 29.167 0.00 0.00 0.00 1.94
281 282 5.893897 AGCAGGCAATTTTCAAAACAAAA 57.106 30.435 0.00 0.00 0.00 2.44
282 283 7.066766 ACAATAGCAGGCAATTTTCAAAACAAA 59.933 29.630 0.00 0.00 0.00 2.83
283 284 6.541641 ACAATAGCAGGCAATTTTCAAAACAA 59.458 30.769 0.00 0.00 0.00 2.83
284 285 6.018098 CACAATAGCAGGCAATTTTCAAAACA 60.018 34.615 0.00 0.00 0.00 2.83
285 286 6.365050 CACAATAGCAGGCAATTTTCAAAAC 58.635 36.000 0.00 0.00 0.00 2.43
286 287 5.469421 CCACAATAGCAGGCAATTTTCAAAA 59.531 36.000 0.00 0.00 0.00 2.44
287 288 4.996122 CCACAATAGCAGGCAATTTTCAAA 59.004 37.500 0.00 0.00 0.00 2.69
288 289 4.563168 CCCACAATAGCAGGCAATTTTCAA 60.563 41.667 0.00 0.00 0.00 2.69
289 290 3.055963 CCCACAATAGCAGGCAATTTTCA 60.056 43.478 0.00 0.00 0.00 2.69
290 291 3.055891 ACCCACAATAGCAGGCAATTTTC 60.056 43.478 0.00 0.00 0.00 2.29
291 292 2.905736 ACCCACAATAGCAGGCAATTTT 59.094 40.909 0.00 0.00 0.00 1.82
292 293 2.497273 GACCCACAATAGCAGGCAATTT 59.503 45.455 0.00 0.00 0.00 1.82
293 294 2.102578 GACCCACAATAGCAGGCAATT 58.897 47.619 0.00 0.00 0.00 2.32
294 295 1.767759 GACCCACAATAGCAGGCAAT 58.232 50.000 0.00 0.00 0.00 3.56
295 296 0.676466 CGACCCACAATAGCAGGCAA 60.676 55.000 0.00 0.00 0.00 4.52
296 297 1.078497 CGACCCACAATAGCAGGCA 60.078 57.895 0.00 0.00 0.00 4.75
297 298 1.078426 ACGACCCACAATAGCAGGC 60.078 57.895 0.00 0.00 0.00 4.85
298 299 0.537188 AGACGACCCACAATAGCAGG 59.463 55.000 0.00 0.00 0.00 4.85
299 300 1.204704 TGAGACGACCCACAATAGCAG 59.795 52.381 0.00 0.00 0.00 4.24
300 301 1.204704 CTGAGACGACCCACAATAGCA 59.795 52.381 0.00 0.00 0.00 3.49
301 302 1.204941 ACTGAGACGACCCACAATAGC 59.795 52.381 0.00 0.00 0.00 2.97
302 303 3.945921 TCTACTGAGACGACCCACAATAG 59.054 47.826 0.00 0.00 0.00 1.73
303 304 3.945921 CTCTACTGAGACGACCCACAATA 59.054 47.826 0.00 0.00 42.73 1.90
304 305 2.755655 CTCTACTGAGACGACCCACAAT 59.244 50.000 0.00 0.00 42.73 2.71
305 306 2.160205 CTCTACTGAGACGACCCACAA 58.840 52.381 0.00 0.00 42.73 3.33
306 307 1.822506 CTCTACTGAGACGACCCACA 58.177 55.000 0.00 0.00 42.73 4.17
307 308 0.452585 GCTCTACTGAGACGACCCAC 59.547 60.000 0.00 0.00 42.73 4.61
308 309 0.037734 TGCTCTACTGAGACGACCCA 59.962 55.000 0.00 0.00 42.73 4.51
309 310 0.736053 CTGCTCTACTGAGACGACCC 59.264 60.000 0.00 0.00 42.73 4.46
310 311 1.131504 CACTGCTCTACTGAGACGACC 59.868 57.143 0.00 0.00 42.73 4.79
311 312 1.807742 ACACTGCTCTACTGAGACGAC 59.192 52.381 0.00 0.00 42.73 4.34
312 313 2.186532 ACACTGCTCTACTGAGACGA 57.813 50.000 0.00 0.00 42.73 4.20
313 314 2.983136 CAAACACTGCTCTACTGAGACG 59.017 50.000 0.00 0.00 42.73 4.18
314 315 3.321497 CCAAACACTGCTCTACTGAGAC 58.679 50.000 0.00 0.00 42.73 3.36
315 316 2.289072 GCCAAACACTGCTCTACTGAGA 60.289 50.000 0.00 0.00 42.73 3.27
316 317 2.072298 GCCAAACACTGCTCTACTGAG 58.928 52.381 0.00 0.00 42.96 3.35
317 318 1.416030 TGCCAAACACTGCTCTACTGA 59.584 47.619 0.00 0.00 0.00 3.41
318 319 1.532868 GTGCCAAACACTGCTCTACTG 59.467 52.381 0.00 0.00 46.41 2.74
319 320 1.884235 GTGCCAAACACTGCTCTACT 58.116 50.000 0.00 0.00 46.41 2.57
328 329 5.886096 ATGTGTATCATGGGTGCCAAACAC 61.886 45.833 0.00 0.00 40.95 3.32
329 330 2.166829 GTGTATCATGGGTGCCAAACA 58.833 47.619 0.00 0.00 36.95 2.83
330 331 2.166829 TGTGTATCATGGGTGCCAAAC 58.833 47.619 0.00 0.00 36.95 2.93
331 332 2.593925 TGTGTATCATGGGTGCCAAA 57.406 45.000 0.00 0.00 36.95 3.28
332 333 2.824689 ATGTGTATCATGGGTGCCAA 57.175 45.000 0.00 0.00 36.95 4.52
341 342 2.681344 CACACTGCTGCATGTGTATCAT 59.319 45.455 25.98 10.23 44.43 2.45
342 343 2.078392 CACACTGCTGCATGTGTATCA 58.922 47.619 25.98 0.00 44.43 2.15
343 344 1.202110 GCACACTGCTGCATGTGTATC 60.202 52.381 28.68 21.43 46.48 2.24
344 345 0.806868 GCACACTGCTGCATGTGTAT 59.193 50.000 28.68 13.89 46.48 2.29
345 346 1.567746 CGCACACTGCTGCATGTGTA 61.568 55.000 28.68 2.04 46.48 2.90
346 347 2.900167 CGCACACTGCTGCATGTGT 61.900 57.895 28.68 26.10 46.48 3.72
348 349 2.592574 ACGCACACTGCTGCATGT 60.593 55.556 1.31 7.32 42.25 3.21
349 350 2.175078 GACGCACACTGCTGCATG 59.825 61.111 1.31 6.66 42.25 4.06
350 351 2.281002 TGACGCACACTGCTGCAT 60.281 55.556 1.31 0.00 42.25 3.96
351 352 2.968697 CTGACGCACACTGCTGCA 60.969 61.111 0.88 0.88 42.25 4.41
352 353 4.380628 GCTGACGCACACTGCTGC 62.381 66.667 0.00 0.00 42.25 5.25
353 354 1.779025 AAAGCTGACGCACACTGCTG 61.779 55.000 0.00 0.00 42.25 4.41
354 355 1.524621 AAAGCTGACGCACACTGCT 60.525 52.632 0.00 0.00 42.25 4.24
355 356 1.369689 CAAAGCTGACGCACACTGC 60.370 57.895 0.00 0.00 40.69 4.40
356 357 1.369689 GCAAAGCTGACGCACACTG 60.370 57.895 0.00 0.00 39.10 3.66
357 358 1.779025 CTGCAAAGCTGACGCACACT 61.779 55.000 1.09 0.00 39.10 3.55
358 359 1.369689 CTGCAAAGCTGACGCACAC 60.370 57.895 1.09 0.00 39.10 3.82
359 360 3.024784 CTGCAAAGCTGACGCACA 58.975 55.556 1.09 0.00 39.10 4.57
360 361 2.428071 GCTGCAAAGCTGACGCAC 60.428 61.111 0.00 0.00 39.10 5.34
361 362 2.901339 TGCTGCAAAGCTGACGCA 60.901 55.556 0.00 5.03 39.10 5.24
362 363 2.428071 GTGCTGCAAAGCTGACGC 60.428 61.111 2.77 0.00 35.49 5.19
363 364 0.659417 CTTGTGCTGCAAAGCTGACG 60.659 55.000 2.77 0.00 36.53 4.35
364 365 0.383231 ACTTGTGCTGCAAAGCTGAC 59.617 50.000 18.14 1.89 36.53 3.51
365 366 0.382873 CACTTGTGCTGCAAAGCTGA 59.617 50.000 18.14 0.00 36.53 4.26
366 367 0.596600 CCACTTGTGCTGCAAAGCTG 60.597 55.000 18.14 15.43 36.53 4.24
367 368 1.039233 ACCACTTGTGCTGCAAAGCT 61.039 50.000 18.14 8.20 36.53 3.74
368 369 0.872881 CACCACTTGTGCTGCAAAGC 60.873 55.000 18.14 3.74 38.34 3.51
369 370 3.261441 CACCACTTGTGCTGCAAAG 57.739 52.632 2.77 12.70 38.34 2.77
377 378 7.908458 ATGGATTATATGCAGCACCACTTGTG 61.908 42.308 0.00 0.00 39.17 3.33
378 379 3.885297 GGATTATATGCAGCACCACTTGT 59.115 43.478 0.00 0.00 0.00 3.16
379 380 3.884693 TGGATTATATGCAGCACCACTTG 59.115 43.478 0.00 0.00 0.00 3.16
380 381 4.169059 TGGATTATATGCAGCACCACTT 57.831 40.909 0.00 0.00 0.00 3.16
381 382 3.862877 TGGATTATATGCAGCACCACT 57.137 42.857 0.00 0.00 0.00 4.00
382 383 3.192001 CCATGGATTATATGCAGCACCAC 59.808 47.826 5.56 0.00 32.88 4.16
383 384 3.423749 CCATGGATTATATGCAGCACCA 58.576 45.455 5.56 0.00 32.88 4.17
384 385 2.165030 GCCATGGATTATATGCAGCACC 59.835 50.000 18.40 0.00 32.88 5.01
385 386 2.165030 GGCCATGGATTATATGCAGCAC 59.835 50.000 18.40 0.00 32.88 4.40
386 387 2.042026 AGGCCATGGATTATATGCAGCA 59.958 45.455 18.40 0.00 32.88 4.41
387 388 2.686915 GAGGCCATGGATTATATGCAGC 59.313 50.000 18.40 0.00 32.88 5.25
388 389 4.232188 AGAGGCCATGGATTATATGCAG 57.768 45.455 18.40 0.00 32.88 4.41
389 390 4.338012 CAAGAGGCCATGGATTATATGCA 58.662 43.478 18.40 0.00 34.26 3.96
390 391 3.129988 GCAAGAGGCCATGGATTATATGC 59.870 47.826 18.40 13.95 36.11 3.14
391 392 4.597004 AGCAAGAGGCCATGGATTATATG 58.403 43.478 18.40 7.68 46.50 1.78
392 393 4.942363 AGCAAGAGGCCATGGATTATAT 57.058 40.909 18.40 0.00 46.50 0.86
393 394 5.073008 TGTTAGCAAGAGGCCATGGATTATA 59.927 40.000 18.40 0.00 46.50 0.98
394 395 4.141181 TGTTAGCAAGAGGCCATGGATTAT 60.141 41.667 18.40 0.00 46.50 1.28
395 396 3.201930 TGTTAGCAAGAGGCCATGGATTA 59.798 43.478 18.40 0.00 46.50 1.75
396 397 2.025037 TGTTAGCAAGAGGCCATGGATT 60.025 45.455 18.40 1.08 46.50 3.01
397 398 1.565759 TGTTAGCAAGAGGCCATGGAT 59.434 47.619 18.40 1.89 46.50 3.41
398 399 0.991146 TGTTAGCAAGAGGCCATGGA 59.009 50.000 18.40 0.00 46.50 3.41
399 400 1.679680 CATGTTAGCAAGAGGCCATGG 59.320 52.381 7.63 7.63 46.50 3.66
400 401 2.372264 ACATGTTAGCAAGAGGCCATG 58.628 47.619 5.01 1.50 46.50 3.66
401 402 2.814805 ACATGTTAGCAAGAGGCCAT 57.185 45.000 5.01 0.00 46.50 4.40
402 403 3.712016 TTACATGTTAGCAAGAGGCCA 57.288 42.857 5.01 0.00 46.50 5.36
403 404 4.010349 ACTTTACATGTTAGCAAGAGGCC 58.990 43.478 2.30 0.00 46.50 5.19
404 405 5.393962 CAACTTTACATGTTAGCAAGAGGC 58.606 41.667 2.30 0.00 45.30 4.70
405 406 5.106157 CCCAACTTTACATGTTAGCAAGAGG 60.106 44.000 2.30 9.10 0.00 3.69
406 407 5.619981 GCCCAACTTTACATGTTAGCAAGAG 60.620 44.000 2.30 0.00 0.00 2.85
407 408 4.217550 GCCCAACTTTACATGTTAGCAAGA 59.782 41.667 2.30 0.00 0.00 3.02
408 409 4.218417 AGCCCAACTTTACATGTTAGCAAG 59.782 41.667 2.30 4.54 32.04 4.01
409 410 4.022416 CAGCCCAACTTTACATGTTAGCAA 60.022 41.667 2.30 0.00 32.04 3.91
410 411 3.505680 CAGCCCAACTTTACATGTTAGCA 59.494 43.478 2.30 0.00 32.04 3.49
411 412 3.119495 CCAGCCCAACTTTACATGTTAGC 60.119 47.826 2.30 0.00 0.00 3.09
412 413 4.331968 TCCAGCCCAACTTTACATGTTAG 58.668 43.478 2.30 4.82 0.00 2.34
413 414 4.331968 CTCCAGCCCAACTTTACATGTTA 58.668 43.478 2.30 0.00 0.00 2.41
414 415 3.157087 CTCCAGCCCAACTTTACATGTT 58.843 45.455 2.30 0.00 0.00 2.71
415 416 2.555227 CCTCCAGCCCAACTTTACATGT 60.555 50.000 2.69 2.69 0.00 3.21
416 417 2.094675 CCTCCAGCCCAACTTTACATG 58.905 52.381 0.00 0.00 0.00 3.21
417 418 1.005924 CCCTCCAGCCCAACTTTACAT 59.994 52.381 0.00 0.00 0.00 2.29
418 419 0.404040 CCCTCCAGCCCAACTTTACA 59.596 55.000 0.00 0.00 0.00 2.41
419 420 0.696501 TCCCTCCAGCCCAACTTTAC 59.303 55.000 0.00 0.00 0.00 2.01
420 421 1.451449 TTCCCTCCAGCCCAACTTTA 58.549 50.000 0.00 0.00 0.00 1.85
421 422 0.560688 TTTCCCTCCAGCCCAACTTT 59.439 50.000 0.00 0.00 0.00 2.66
422 423 0.786435 ATTTCCCTCCAGCCCAACTT 59.214 50.000 0.00 0.00 0.00 2.66
423 424 1.681229 TATTTCCCTCCAGCCCAACT 58.319 50.000 0.00 0.00 0.00 3.16
424 425 2.525105 TTATTTCCCTCCAGCCCAAC 57.475 50.000 0.00 0.00 0.00 3.77
425 426 2.381961 ACTTTATTTCCCTCCAGCCCAA 59.618 45.455 0.00 0.00 0.00 4.12
426 427 2.000048 ACTTTATTTCCCTCCAGCCCA 59.000 47.619 0.00 0.00 0.00 5.36
427 428 2.828661 ACTTTATTTCCCTCCAGCCC 57.171 50.000 0.00 0.00 0.00 5.19
428 429 5.125578 CACTTTACTTTATTTCCCTCCAGCC 59.874 44.000 0.00 0.00 0.00 4.85
429 430 5.393135 GCACTTTACTTTATTTCCCTCCAGC 60.393 44.000 0.00 0.00 0.00 4.85
430 431 5.946377 AGCACTTTACTTTATTTCCCTCCAG 59.054 40.000 0.00 0.00 0.00 3.86
431 432 5.887754 AGCACTTTACTTTATTTCCCTCCA 58.112 37.500 0.00 0.00 0.00 3.86
432 433 6.882678 TGTAGCACTTTACTTTATTTCCCTCC 59.117 38.462 0.00 0.00 0.00 4.30
433 434 7.916914 TGTAGCACTTTACTTTATTTCCCTC 57.083 36.000 0.00 0.00 0.00 4.30
434 435 8.879427 ATTGTAGCACTTTACTTTATTTCCCT 57.121 30.769 0.00 0.00 0.00 4.20
435 436 8.188799 GGATTGTAGCACTTTACTTTATTTCCC 58.811 37.037 0.00 0.00 0.00 3.97
436 437 8.188799 GGGATTGTAGCACTTTACTTTATTTCC 58.811 37.037 0.00 0.00 0.00 3.13
437 438 8.736244 TGGGATTGTAGCACTTTACTTTATTTC 58.264 33.333 0.00 0.00 0.00 2.17
438 439 8.644374 TGGGATTGTAGCACTTTACTTTATTT 57.356 30.769 0.00 0.00 0.00 1.40
439 440 8.686334 CATGGGATTGTAGCACTTTACTTTATT 58.314 33.333 0.00 0.00 0.00 1.40
440 441 8.052748 TCATGGGATTGTAGCACTTTACTTTAT 58.947 33.333 0.00 0.00 0.00 1.40
441 442 7.335924 GTCATGGGATTGTAGCACTTTACTTTA 59.664 37.037 0.00 0.00 0.00 1.85
442 443 6.151144 GTCATGGGATTGTAGCACTTTACTTT 59.849 38.462 0.00 0.00 0.00 2.66
443 444 5.648092 GTCATGGGATTGTAGCACTTTACTT 59.352 40.000 0.00 0.00 0.00 2.24
444 445 5.186198 GTCATGGGATTGTAGCACTTTACT 58.814 41.667 0.00 0.00 0.00 2.24
445 446 4.335594 GGTCATGGGATTGTAGCACTTTAC 59.664 45.833 0.00 0.00 0.00 2.01
446 447 4.523083 GGTCATGGGATTGTAGCACTTTA 58.477 43.478 0.00 0.00 0.00 1.85
447 448 3.356290 GGTCATGGGATTGTAGCACTTT 58.644 45.455 0.00 0.00 0.00 2.66
448 449 2.357154 GGGTCATGGGATTGTAGCACTT 60.357 50.000 0.00 0.00 0.00 3.16
449 450 1.212935 GGGTCATGGGATTGTAGCACT 59.787 52.381 0.00 0.00 0.00 4.40
450 451 1.680338 GGGTCATGGGATTGTAGCAC 58.320 55.000 0.00 0.00 0.00 4.40
451 452 0.550914 GGGGTCATGGGATTGTAGCA 59.449 55.000 0.00 0.00 0.00 3.49
452 453 0.550914 TGGGGTCATGGGATTGTAGC 59.449 55.000 0.00 0.00 0.00 3.58
453 454 4.324563 GGATATGGGGTCATGGGATTGTAG 60.325 50.000 0.00 0.00 34.96 2.74
454 455 3.591527 GGATATGGGGTCATGGGATTGTA 59.408 47.826 0.00 0.00 34.96 2.41
455 456 2.379907 GGATATGGGGTCATGGGATTGT 59.620 50.000 0.00 0.00 34.96 2.71
456 457 2.379567 TGGATATGGGGTCATGGGATTG 59.620 50.000 0.00 0.00 34.96 2.67
457 458 2.729485 TGGATATGGGGTCATGGGATT 58.271 47.619 0.00 0.00 34.96 3.01
458 459 2.456496 TGGATATGGGGTCATGGGAT 57.544 50.000 0.00 0.00 34.96 3.85
459 460 2.157801 AGATGGATATGGGGTCATGGGA 60.158 50.000 0.00 0.00 34.96 4.37
460 461 2.281966 AGATGGATATGGGGTCATGGG 58.718 52.381 0.00 0.00 34.96 4.00
461 462 4.723285 TGATAGATGGATATGGGGTCATGG 59.277 45.833 0.00 0.00 34.96 3.66
462 463 5.686913 GCTGATAGATGGATATGGGGTCATG 60.687 48.000 0.00 0.00 34.96 3.07
463 464 4.411540 GCTGATAGATGGATATGGGGTCAT 59.588 45.833 0.00 0.00 37.40 3.06
464 465 3.776969 GCTGATAGATGGATATGGGGTCA 59.223 47.826 0.00 0.00 0.00 4.02
465 466 3.776969 TGCTGATAGATGGATATGGGGTC 59.223 47.826 0.00 0.00 0.00 4.46
466 467 3.806975 TGCTGATAGATGGATATGGGGT 58.193 45.455 0.00 0.00 0.00 4.95
467 468 4.202440 GGATGCTGATAGATGGATATGGGG 60.202 50.000 0.00 0.00 0.00 4.96
468 469 4.659368 AGGATGCTGATAGATGGATATGGG 59.341 45.833 0.00 0.00 0.00 4.00
469 470 5.890752 AGGATGCTGATAGATGGATATGG 57.109 43.478 0.00 0.00 0.00 2.74
470 471 8.577048 AAAAAGGATGCTGATAGATGGATATG 57.423 34.615 0.00 0.00 0.00 1.78
495 496 6.385467 TCTGGAAGGAATTTTTCTTTGGGAAA 59.615 34.615 4.34 0.00 41.58 3.13
496 497 5.902431 TCTGGAAGGAATTTTTCTTTGGGAA 59.098 36.000 4.34 0.00 0.00 3.97
497 498 5.463154 TCTGGAAGGAATTTTTCTTTGGGA 58.537 37.500 4.34 0.00 0.00 4.37
498 499 5.806654 TCTGGAAGGAATTTTTCTTTGGG 57.193 39.130 4.34 0.00 0.00 4.12
499 500 7.237209 AGATCTGGAAGGAATTTTTCTTTGG 57.763 36.000 0.00 0.00 0.00 3.28
500 501 7.178097 AGGAGATCTGGAAGGAATTTTTCTTTG 59.822 37.037 0.00 0.00 0.00 2.77
501 502 7.244558 AGGAGATCTGGAAGGAATTTTTCTTT 58.755 34.615 0.00 0.00 0.00 2.52
502 503 6.798766 AGGAGATCTGGAAGGAATTTTTCTT 58.201 36.000 0.00 0.00 0.00 2.52
503 504 6.400096 AGGAGATCTGGAAGGAATTTTTCT 57.600 37.500 0.00 0.00 0.00 2.52
504 505 5.592282 GGAGGAGATCTGGAAGGAATTTTTC 59.408 44.000 0.00 0.00 0.00 2.29
505 506 5.015603 TGGAGGAGATCTGGAAGGAATTTTT 59.984 40.000 0.00 0.00 0.00 1.94
506 507 4.541714 TGGAGGAGATCTGGAAGGAATTTT 59.458 41.667 0.00 0.00 0.00 1.82
507 508 4.114597 TGGAGGAGATCTGGAAGGAATTT 58.885 43.478 0.00 0.00 0.00 1.82
508 509 3.740780 TGGAGGAGATCTGGAAGGAATT 58.259 45.455 0.00 0.00 0.00 2.17
509 510 3.428063 TGGAGGAGATCTGGAAGGAAT 57.572 47.619 0.00 0.00 0.00 3.01
510 511 2.948889 TGGAGGAGATCTGGAAGGAA 57.051 50.000 0.00 0.00 0.00 3.36
511 512 2.948889 TTGGAGGAGATCTGGAAGGA 57.051 50.000 0.00 0.00 0.00 3.36
512 513 2.843113 ACTTTGGAGGAGATCTGGAAGG 59.157 50.000 0.00 0.00 0.00 3.46
513 514 4.512484 GAACTTTGGAGGAGATCTGGAAG 58.488 47.826 0.00 0.00 0.00 3.46
514 515 3.264450 GGAACTTTGGAGGAGATCTGGAA 59.736 47.826 0.00 0.00 0.00 3.53
515 516 2.840651 GGAACTTTGGAGGAGATCTGGA 59.159 50.000 0.00 0.00 0.00 3.86
516 517 2.092699 GGGAACTTTGGAGGAGATCTGG 60.093 54.545 0.00 0.00 0.00 3.86
517 518 2.092699 GGGGAACTTTGGAGGAGATCTG 60.093 54.545 0.00 0.00 0.00 2.90
518 519 2.200955 GGGGAACTTTGGAGGAGATCT 58.799 52.381 0.00 0.00 0.00 2.75
519 520 1.916181 TGGGGAACTTTGGAGGAGATC 59.084 52.381 0.00 0.00 0.00 2.75
520 521 2.059756 TGGGGAACTTTGGAGGAGAT 57.940 50.000 0.00 0.00 0.00 2.75
521 522 2.059756 ATGGGGAACTTTGGAGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
522 523 2.907458 AATGGGGAACTTTGGAGGAG 57.093 50.000 0.00 0.00 0.00 3.69
523 524 2.580783 CCTAATGGGGAACTTTGGAGGA 59.419 50.000 0.00 0.00 0.00 3.71
524 525 2.580783 TCCTAATGGGGAACTTTGGAGG 59.419 50.000 0.00 0.00 35.33 4.30
525 526 3.267031 AGTCCTAATGGGGAACTTTGGAG 59.733 47.826 0.00 0.00 37.10 3.86
526 527 3.265489 AGTCCTAATGGGGAACTTTGGA 58.735 45.455 0.00 0.00 37.10 3.53
527 528 3.621558 GAGTCCTAATGGGGAACTTTGG 58.378 50.000 0.00 0.00 37.10 3.28
528 529 3.621558 GGAGTCCTAATGGGGAACTTTG 58.378 50.000 0.41 0.00 37.10 2.77
529 530 2.581246 GGGAGTCCTAATGGGGAACTTT 59.419 50.000 9.58 0.00 37.10 2.66
530 531 2.206223 GGGAGTCCTAATGGGGAACTT 58.794 52.381 9.58 0.00 37.10 2.66
531 532 1.894699 GGGAGTCCTAATGGGGAACT 58.105 55.000 9.58 0.00 37.10 3.01
532 533 0.468648 CGGGAGTCCTAATGGGGAAC 59.531 60.000 9.58 0.00 37.10 3.62
533 534 0.340558 TCGGGAGTCCTAATGGGGAA 59.659 55.000 9.58 0.00 37.10 3.97
534 535 0.340558 TTCGGGAGTCCTAATGGGGA 59.659 55.000 9.58 0.00 35.33 4.81
535 536 1.348036 GATTCGGGAGTCCTAATGGGG 59.652 57.143 9.58 0.00 29.74 4.96
536 537 1.348036 GGATTCGGGAGTCCTAATGGG 59.652 57.143 9.58 0.00 34.70 4.00
537 538 1.348036 GGGATTCGGGAGTCCTAATGG 59.652 57.143 9.58 0.00 37.37 3.16
538 539 2.330216 AGGGATTCGGGAGTCCTAATG 58.670 52.381 9.58 0.00 37.37 1.90
539 540 2.797285 AGGGATTCGGGAGTCCTAAT 57.203 50.000 9.58 9.40 37.37 1.73
540 541 3.917324 ATAGGGATTCGGGAGTCCTAA 57.083 47.619 9.58 4.53 37.37 2.69
541 542 3.501751 GGAATAGGGATTCGGGAGTCCTA 60.502 52.174 9.58 0.00 42.20 2.94
542 543 2.610873 GAATAGGGATTCGGGAGTCCT 58.389 52.381 9.58 0.00 37.37 3.85
543 544 1.624312 GGAATAGGGATTCGGGAGTCC 59.376 57.143 0.00 0.00 42.20 3.85
544 545 1.624312 GGGAATAGGGATTCGGGAGTC 59.376 57.143 0.00 0.00 42.20 3.36
545 546 1.061657 TGGGAATAGGGATTCGGGAGT 60.062 52.381 0.00 0.00 42.20 3.85
546 547 1.348036 GTGGGAATAGGGATTCGGGAG 59.652 57.143 0.00 0.00 42.20 4.30
547 548 1.061657 AGTGGGAATAGGGATTCGGGA 60.062 52.381 0.00 0.00 42.20 5.14
548 549 1.348036 GAGTGGGAATAGGGATTCGGG 59.652 57.143 0.00 0.00 42.20 5.14
549 550 2.047061 TGAGTGGGAATAGGGATTCGG 58.953 52.381 0.00 0.00 42.20 4.30
550 551 4.202357 TGAATGAGTGGGAATAGGGATTCG 60.202 45.833 0.00 0.00 42.20 3.34
551 552 5.066593 GTGAATGAGTGGGAATAGGGATTC 58.933 45.833 0.00 0.00 40.79 2.52
552 553 4.478317 TGTGAATGAGTGGGAATAGGGATT 59.522 41.667 0.00 0.00 0.00 3.01
553 554 4.047166 TGTGAATGAGTGGGAATAGGGAT 58.953 43.478 0.00 0.00 0.00 3.85
554 555 3.459828 TGTGAATGAGTGGGAATAGGGA 58.540 45.455 0.00 0.00 0.00 4.20
555 556 3.931907 TGTGAATGAGTGGGAATAGGG 57.068 47.619 0.00 0.00 0.00 3.53
556 557 3.629398 GCTTGTGAATGAGTGGGAATAGG 59.371 47.826 0.00 0.00 0.00 2.57
557 558 4.521146 AGCTTGTGAATGAGTGGGAATAG 58.479 43.478 0.00 0.00 0.00 1.73
558 559 4.574674 AGCTTGTGAATGAGTGGGAATA 57.425 40.909 0.00 0.00 0.00 1.75
559 560 3.446442 AGCTTGTGAATGAGTGGGAAT 57.554 42.857 0.00 0.00 0.00 3.01
560 561 2.957402 AGCTTGTGAATGAGTGGGAA 57.043 45.000 0.00 0.00 0.00 3.97
561 562 2.106338 TGAAGCTTGTGAATGAGTGGGA 59.894 45.455 2.10 0.00 0.00 4.37
562 563 2.507484 TGAAGCTTGTGAATGAGTGGG 58.493 47.619 2.10 0.00 0.00 4.61
563 564 3.817084 TCTTGAAGCTTGTGAATGAGTGG 59.183 43.478 2.10 0.00 0.00 4.00
564 565 5.411977 AGATCTTGAAGCTTGTGAATGAGTG 59.588 40.000 2.10 0.00 0.00 3.51
565 566 5.558818 AGATCTTGAAGCTTGTGAATGAGT 58.441 37.500 2.10 0.00 0.00 3.41
566 567 5.064962 GGAGATCTTGAAGCTTGTGAATGAG 59.935 44.000 2.10 0.00 0.00 2.90
567 568 4.940046 GGAGATCTTGAAGCTTGTGAATGA 59.060 41.667 2.10 0.00 0.00 2.57
571 572 2.639347 TGGGAGATCTTGAAGCTTGTGA 59.361 45.455 2.10 0.00 0.00 3.58
584 585 1.573108 TGACTGGGAGTTGGGAGATC 58.427 55.000 0.00 0.00 0.00 2.75
600 601 0.031449 GCAGGCTCTACTCCGATGAC 59.969 60.000 0.00 0.00 0.00 3.06
652 656 1.152756 GGGTGAAGTTGTGGTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
656 660 0.544697 AACTCGGGTGAAGTTGTGGT 59.455 50.000 0.00 0.00 0.00 4.16
660 664 0.588252 CAGCAACTCGGGTGAAGTTG 59.412 55.000 10.79 10.79 43.90 3.16
678 682 2.343758 GAGTCGTGGAAGCAGGCA 59.656 61.111 0.00 0.00 0.00 4.75
679 683 2.811317 CGAGTCGTGGAAGCAGGC 60.811 66.667 3.82 0.00 0.00 4.85
737 747 1.087771 AGCATTGTAACGGCGGTAGC 61.088 55.000 13.24 9.00 44.18 3.58
738 748 1.062002 CAAGCATTGTAACGGCGGTAG 59.938 52.381 13.24 0.00 42.34 3.18
739 749 1.080298 CAAGCATTGTAACGGCGGTA 58.920 50.000 13.24 6.06 42.34 4.02
757 771 4.700365 CACGTCGACGCCAGCTCA 62.700 66.667 35.92 0.00 44.43 4.26
815 838 1.985614 CTGATCAGCACCCAGGACA 59.014 57.895 10.38 0.00 0.00 4.02
900 927 7.776969 AGACGTGTATAAGTAGAGTTTGGGATA 59.223 37.037 0.00 0.00 0.00 2.59
908 935 5.646793 TGAGCAAGACGTGTATAAGTAGAGT 59.353 40.000 0.00 0.00 0.00 3.24
1011 1057 1.376466 GAGTGCCATGGTGACCACT 59.624 57.895 19.14 19.14 40.92 4.00
1026 1072 4.643387 GCAACCAGTGGCCGGAGT 62.643 66.667 9.78 0.00 0.00 3.85
1041 1087 1.001764 CTTGTCCCTGAGCATGGCA 60.002 57.895 0.00 0.00 0.00 4.92
1476 1522 2.997897 GACACCGGAGTCTGCCCT 60.998 66.667 22.97 0.00 35.65 5.19
1485 1534 3.466881 CACTCCTTGGACACCGGA 58.533 61.111 9.46 0.00 0.00 5.14
1548 1597 6.531503 TTCTTATCTTCGTGTCTGGATCTT 57.468 37.500 0.00 0.00 0.00 2.40
1610 1659 2.025155 TGGGAACTACTGCGAGATCTC 58.975 52.381 13.05 13.05 0.00 2.75
1653 1702 2.484264 GAGTTGCGCTAATGTGGTCTTT 59.516 45.455 9.73 0.00 0.00 2.52
2372 2436 5.425539 TCTTCCTCCTGTTCTGGTATAAAGG 59.574 44.000 0.00 0.00 0.00 3.11
2379 2443 4.027437 GACTATCTTCCTCCTGTTCTGGT 58.973 47.826 0.00 0.00 0.00 4.00
2442 2506 6.227298 TCTATGTCCAGAAAGAATGACCTC 57.773 41.667 0.00 0.00 0.00 3.85
2485 2549 8.078596 AGTTCTGAAACAATACTGCTGATTTTC 58.921 33.333 0.00 0.05 37.88 2.29
2592 2658 1.885887 TCCGAAAGCCACTCAATTTGG 59.114 47.619 0.00 0.00 37.17 3.28
2908 2992 7.923800 GTTCAAGAGAACGGCAGTTGGAAAC 62.924 48.000 7.05 0.00 45.21 2.78
3125 3212 4.141135 TCTCTACCTGGCATAGTTCTAGCT 60.141 45.833 0.00 0.00 0.00 3.32
3132 3219 4.716784 TCAACATTCTCTACCTGGCATAGT 59.283 41.667 0.00 0.00 0.00 2.12
3165 3252 1.406614 CCAAGGTTTGCCACTTTTGCA 60.407 47.619 0.00 0.00 37.19 4.08
3169 3256 0.829990 CCACCAAGGTTTGCCACTTT 59.170 50.000 0.00 0.00 37.19 2.66
3271 3461 6.176183 CCTCAGTCCATCTTAATGTCAGTTT 58.824 40.000 0.00 0.00 0.00 2.66
3579 3771 6.994421 ACCAACTTTCCACAATTCCTAATT 57.006 33.333 0.00 0.00 0.00 1.40
3620 3812 1.068055 CACAAGGTCCTTGCAGCAATC 60.068 52.381 28.34 2.59 44.43 2.67
3693 3885 5.956068 AGCTCTCCAACTCTTTCATTTTC 57.044 39.130 0.00 0.00 0.00 2.29
3864 4056 1.804748 GGAAAGGCTGAACGTACCAAG 59.195 52.381 0.00 0.00 0.00 3.61
4358 4626 4.772624 TGCAGTCACTAATCTGTAACCTCT 59.227 41.667 0.00 0.00 34.57 3.69
4409 4677 0.391661 GGATGCTGACGGCTCAAGAA 60.392 55.000 7.96 0.00 42.39 2.52
4575 4843 0.253044 GGACTAACTCTGCCATGCCA 59.747 55.000 0.00 0.00 0.00 4.92
4689 4957 4.327680 AGCTTCCACATCCAACTAAAGTC 58.672 43.478 0.00 0.00 0.00 3.01
4691 4959 5.705441 TGTAAGCTTCCACATCCAACTAAAG 59.295 40.000 0.00 0.00 0.00 1.85
5292 5586 3.190535 GCTGGCGTGGTATATTTAATGGG 59.809 47.826 0.00 0.00 0.00 4.00
5302 5596 1.026182 CACACATGCTGGCGTGGTAT 61.026 55.000 17.43 1.74 37.45 2.73
5319 5619 1.722011 ACCGCTGCAAGTATGTACAC 58.278 50.000 0.00 0.00 35.30 2.90
5326 5626 5.186942 TGGAAATTTATACCGCTGCAAGTA 58.813 37.500 0.00 0.89 35.30 2.24
5327 5627 4.013728 TGGAAATTTATACCGCTGCAAGT 58.986 39.130 0.00 0.00 35.30 3.16
5328 5628 4.630894 TGGAAATTTATACCGCTGCAAG 57.369 40.909 0.00 0.00 0.00 4.01
5333 5633 7.817418 ATGTAACATGGAAATTTATACCGCT 57.183 32.000 0.00 0.00 0.00 5.52
5347 5670 6.942886 AACGCACAAAATAATGTAACATGG 57.057 33.333 0.00 0.00 30.84 3.66
5360 5683 4.095632 TCATCAGAACAGAAACGCACAAAA 59.904 37.500 0.00 0.00 0.00 2.44
5370 5699 6.711645 TCACAAATGACATCATCAGAACAGAA 59.288 34.615 0.00 0.00 41.91 3.02
5372 5701 6.490566 TCACAAATGACATCATCAGAACAG 57.509 37.500 0.00 0.00 41.91 3.16
5377 5706 6.856426 GCACATATCACAAATGACATCATCAG 59.144 38.462 0.00 0.00 41.91 2.90
5379 5708 6.731164 TGCACATATCACAAATGACATCATC 58.269 36.000 0.00 0.00 37.79 2.92
5380 5709 6.320418 ACTGCACATATCACAAATGACATCAT 59.680 34.615 0.00 0.00 37.79 2.45
5409 5739 4.331968 TCCATGTCTTCGGTTTAAATGCT 58.668 39.130 0.00 0.00 0.00 3.79
5485 5827 1.675641 GCATGGACTGCCGGAGTTT 60.676 57.895 5.05 0.00 45.66 2.66
5582 6000 6.841755 ACAAATATCTCAACTAGGTAGAGGCT 59.158 38.462 7.20 0.00 0.00 4.58
5608 6044 5.163703 CGGGGAAATTCGTTTGATTCACATA 60.164 40.000 0.00 0.00 0.00 2.29
5612 6048 2.490115 CCGGGGAAATTCGTTTGATTCA 59.510 45.455 0.00 0.00 0.00 2.57
5710 6148 3.248602 GCCAGTGTCTTGTCAGTTAACTG 59.751 47.826 26.60 26.60 45.08 3.16
5739 6177 8.920665 CACAGTTGAAAAAGTTTATTGAACACA 58.079 29.630 11.91 0.00 40.84 3.72
5740 6178 8.379902 CCACAGTTGAAAAAGTTTATTGAACAC 58.620 33.333 11.91 0.00 40.84 3.32
5789 6235 1.722034 TCAGGGATCAGGCCTATCAC 58.278 55.000 3.98 10.60 0.00 3.06
5811 6257 7.715249 AGTTCAGTTGTAGAAGCAATACAAGAA 59.285 33.333 8.21 7.20 42.23 2.52
5813 6259 7.041780 ACAGTTCAGTTGTAGAAGCAATACAAG 60.042 37.037 8.21 0.75 42.23 3.16
5814 6260 6.765989 ACAGTTCAGTTGTAGAAGCAATACAA 59.234 34.615 4.80 4.80 40.03 2.41
5815 6261 6.202762 CACAGTTCAGTTGTAGAAGCAATACA 59.797 38.462 0.00 0.00 0.00 2.29
5816 6262 6.593978 CACAGTTCAGTTGTAGAAGCAATAC 58.406 40.000 0.00 0.00 0.00 1.89
5817 6263 5.179368 GCACAGTTCAGTTGTAGAAGCAATA 59.821 40.000 0.00 0.00 0.00 1.90
5929 6420 1.152440 AGATGGTCTCGCCCTAGGG 60.152 63.158 24.89 24.89 36.04 3.53
5936 6427 2.879002 TCAAGATCAGATGGTCTCGC 57.121 50.000 0.00 0.00 0.00 5.03
5984 6476 2.173782 ACAGGAATGTTGTACACACCCA 59.826 45.455 0.00 0.00 38.61 4.51
5996 6488 4.033709 ACTAGGCTACATGACAGGAATGT 58.966 43.478 0.00 0.00 41.14 2.71
6015 6507 9.185680 TCAAGCTATTCAGATACTACAACACTA 57.814 33.333 0.00 0.00 0.00 2.74
6024 6516 9.890629 TTGTATTGTTCAAGCTATTCAGATACT 57.109 29.630 0.00 0.00 0.00 2.12
6169 6699 2.927871 GCTGCTTTGCTGGTTATTGGTG 60.928 50.000 0.00 0.00 0.00 4.17
6295 6836 2.285602 CCGTGTCGCATAAGTACATTGC 60.286 50.000 0.00 0.00 0.00 3.56
6303 6848 3.186909 TGATTCTTCCGTGTCGCATAAG 58.813 45.455 0.00 0.00 0.00 1.73
6304 6849 3.239587 TGATTCTTCCGTGTCGCATAA 57.760 42.857 0.00 0.00 0.00 1.90
6305 6850 2.927477 GTTGATTCTTCCGTGTCGCATA 59.073 45.455 0.00 0.00 0.00 3.14
6306 6851 1.732259 GTTGATTCTTCCGTGTCGCAT 59.268 47.619 0.00 0.00 0.00 4.73
6340 6885 2.607771 CGCTTGTTTGGGATGAGTTTGG 60.608 50.000 0.00 0.00 0.00 3.28
6359 6905 2.097629 GGTTCCTTGGATTTTAGCTCGC 59.902 50.000 0.00 0.00 0.00 5.03
6362 6908 3.701664 CAGGGTTCCTTGGATTTTAGCT 58.298 45.455 0.00 0.00 0.00 3.32
6403 6949 8.682710 GGGTTCAAAATTAATGTCTACTGCATA 58.317 33.333 0.00 0.00 0.00 3.14
6407 6953 7.029563 GCAGGGTTCAAAATTAATGTCTACTG 58.970 38.462 0.00 0.00 0.00 2.74
6412 6958 7.671495 ATTTGCAGGGTTCAAAATTAATGTC 57.329 32.000 0.00 0.00 37.04 3.06
6482 7028 3.913799 TGAGTGTCCTTGAATTTAGGGGA 59.086 43.478 0.00 0.00 33.41 4.81
6483 7029 4.301072 TGAGTGTCCTTGAATTTAGGGG 57.699 45.455 0.00 0.00 33.41 4.79
6487 7033 4.016444 GGCCATGAGTGTCCTTGAATTTA 58.984 43.478 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.