Multiple sequence alignment - TraesCS1D01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G007500 chr1D 100.000 2772 0 0 782 3553 3738561 3735790 0.000000e+00 5120.0
1 TraesCS1D01G007500 chr1D 86.818 2329 182 53 804 3079 4249285 4251541 0.000000e+00 2484.0
2 TraesCS1D01G007500 chr1D 89.189 1036 79 12 782 1787 3860457 3859425 0.000000e+00 1262.0
3 TraesCS1D01G007500 chr1D 88.032 869 50 10 1771 2634 7179561 7178742 0.000000e+00 979.0
4 TraesCS1D01G007500 chr1D 87.917 869 51 10 1771 2634 4309172 4309991 0.000000e+00 974.0
5 TraesCS1D01G007500 chr1D 100.000 468 0 0 1 468 3739342 3738875 0.000000e+00 865.0
6 TraesCS1D01G007500 chr1D 89.666 629 45 14 1777 2398 3857620 3857005 0.000000e+00 784.0
7 TraesCS1D01G007500 chr1D 84.456 772 83 20 2480 3237 3847424 3846676 0.000000e+00 726.0
8 TraesCS1D01G007500 chr1D 90.891 494 44 1 1277 1769 7180181 7179688 0.000000e+00 662.0
9 TraesCS1D01G007500 chr1D 90.688 494 45 1 1277 1769 4308552 4309045 0.000000e+00 656.0
10 TraesCS1D01G007500 chr1D 86.160 513 36 14 798 1279 4300272 4300780 4.060000e-144 521.0
11 TraesCS1D01G007500 chr1D 87.709 358 37 6 2 353 4574906 4575262 9.180000e-111 411.0
12 TraesCS1D01G007500 chr1D 87.320 347 25 4 7 353 4275284 4275611 2.590000e-101 379.0
13 TraesCS1D01G007500 chr1D 91.882 271 21 1 83 353 4248512 4248781 9.310000e-101 377.0
14 TraesCS1D01G007500 chr1D 84.553 369 38 7 3 353 3861551 3861184 7.300000e-92 348.0
15 TraesCS1D01G007500 chr1D 81.503 346 37 13 948 1273 4577306 4577644 3.520000e-65 259.0
16 TraesCS1D01G007500 chr1D 89.881 168 17 0 783 950 4575751 4575918 2.150000e-52 217.0
17 TraesCS1D01G007500 chr1D 85.638 188 23 4 1848 2032 4595317 4595503 1.010000e-45 195.0
18 TraesCS1D01G007500 chr1D 79.012 243 29 9 2500 2723 4595848 4596087 2.860000e-31 147.0
19 TraesCS1D01G007500 chr1D 100.000 40 0 0 3236 3275 3736029 3735990 1.370000e-09 75.0
20 TraesCS1D01G007500 chr1D 100.000 40 0 0 3314 3353 3736107 3736068 1.370000e-09 75.0
21 TraesCS1D01G007500 chr1B 90.032 2468 152 24 788 3237 6445361 6442970 0.000000e+00 3109.0
22 TraesCS1D01G007500 chr1B 93.376 468 26 2 1 468 6447353 6446891 0.000000e+00 688.0
23 TraesCS1D01G007500 chr1B 88.169 355 34 5 2 350 5970175 5969823 1.970000e-112 416.0
24 TraesCS1D01G007500 chr1B 87.709 358 37 6 2 353 6501503 6501859 9.180000e-111 411.0
25 TraesCS1D01G007500 chr1B 87.709 358 37 6 2 353 7589232 7589588 9.180000e-111 411.0
26 TraesCS1D01G007500 chr1B 81.391 532 52 22 782 1273 6502349 6502873 1.200000e-104 390.0
27 TraesCS1D01G007500 chr1B 83.539 243 30 6 1793 2032 6503390 6503625 5.970000e-53 219.0
28 TraesCS1D01G007500 chr1B 82.520 246 33 6 1793 2035 5968295 5968057 1.290000e-49 207.0
29 TraesCS1D01G007500 chr1B 77.820 266 35 11 2502 2748 5967702 5967442 3.700000e-30 143.0
30 TraesCS1D01G007500 chr1B 95.181 83 4 0 782 864 7590079 7590161 8.000000e-27 132.0
31 TraesCS1D01G007500 chr1B 93.023 86 5 1 3393 3478 17164405 17164321 1.340000e-24 124.0
32 TraesCS1D01G007500 chr1B 84.034 119 10 1 2605 2714 17164662 17164544 4.850000e-19 106.0
33 TraesCS1D01G007500 chr1A 89.701 1204 94 18 1281 2467 6510754 6511944 0.000000e+00 1509.0
34 TraesCS1D01G007500 chr1A 82.552 768 102 16 1242 2001 5153252 5152509 0.000000e+00 647.0
35 TraesCS1D01G007500 chr1A 81.426 533 50 24 782 1273 5096556 5096032 1.200000e-104 390.0
36 TraesCS1D01G007500 chr1A 85.674 356 44 5 2 351 5154966 5154612 5.600000e-98 368.0
37 TraesCS1D01G007500 chr1A 94.186 86 4 1 3393 3478 6512398 6512482 2.880000e-26 130.0
38 TraesCS1D01G007500 chr1A 96.000 50 2 0 980 1029 6504239 6504288 8.180000e-12 82.4
39 TraesCS1D01G007500 chrUn 74.963 1350 197 70 1166 2465 293593400 293592142 1.150000e-134 490.0
40 TraesCS1D01G007500 chrUn 74.889 1350 198 70 1166 2465 293578279 293579537 5.330000e-133 484.0
41 TraesCS1D01G007500 chr3D 97.297 74 2 0 3480 3553 589322153 589322080 3.720000e-25 126.0
42 TraesCS1D01G007500 chr3D 88.732 71 8 0 3480 3550 411616653 411616723 1.760000e-13 87.9
43 TraesCS1D01G007500 chr5D 95.946 74 3 0 3480 3553 546372334 546372407 1.730000e-23 121.0
44 TraesCS1D01G007500 chr7B 96.825 63 2 0 3482 3544 517626944 517627006 4.850000e-19 106.0
45 TraesCS1D01G007500 chr7D 91.892 74 6 0 3480 3553 88318543 88318470 1.740000e-18 104.0
46 TraesCS1D01G007500 chr5B 91.892 74 6 0 3480 3553 206502619 206502692 1.740000e-18 104.0
47 TraesCS1D01G007500 chr5B 86.486 74 10 0 3480 3553 77650830 77650757 8.180000e-12 82.4
48 TraesCS1D01G007500 chr6B 91.429 70 5 1 3482 3550 23184968 23185037 1.050000e-15 95.3
49 TraesCS1D01G007500 chr3B 89.855 69 7 0 3480 3548 18494897 18494829 4.890000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G007500 chr1D 3735790 3739342 3552 True 1533.750000 5120 100.000000 1 3553 4 chr1D.!!$R2 3552
1 TraesCS1D01G007500 chr1D 4248512 4251541 3029 False 1430.500000 2484 89.350000 83 3079 2 chr1D.!!$F3 2996
2 TraesCS1D01G007500 chr1D 7178742 7180181 1439 True 820.500000 979 89.461500 1277 2634 2 chr1D.!!$R4 1357
3 TraesCS1D01G007500 chr1D 4308552 4309991 1439 False 815.000000 974 89.302500 1277 2634 2 chr1D.!!$F4 1357
4 TraesCS1D01G007500 chr1D 3857005 3861551 4546 True 798.000000 1262 87.802667 3 2398 3 chr1D.!!$R3 2395
5 TraesCS1D01G007500 chr1D 3846676 3847424 748 True 726.000000 726 84.456000 2480 3237 1 chr1D.!!$R1 757
6 TraesCS1D01G007500 chr1D 4300272 4300780 508 False 521.000000 521 86.160000 798 1279 1 chr1D.!!$F2 481
7 TraesCS1D01G007500 chr1D 4574906 4577644 2738 False 295.666667 411 86.364333 2 1273 3 chr1D.!!$F5 1271
8 TraesCS1D01G007500 chr1B 6442970 6447353 4383 True 1898.500000 3109 91.704000 1 3237 2 chr1B.!!$R2 3236
9 TraesCS1D01G007500 chr1B 6501503 6503625 2122 False 340.000000 411 84.213000 2 2032 3 chr1B.!!$F1 2030
10 TraesCS1D01G007500 chr1B 7589232 7590161 929 False 271.500000 411 91.445000 2 864 2 chr1B.!!$F2 862
11 TraesCS1D01G007500 chr1B 5967442 5970175 2733 True 255.333333 416 82.836333 2 2748 3 chr1B.!!$R1 2746
12 TraesCS1D01G007500 chr1A 6510754 6512482 1728 False 819.500000 1509 91.943500 1281 3478 2 chr1A.!!$F2 2197
13 TraesCS1D01G007500 chr1A 5152509 5154966 2457 True 507.500000 647 84.113000 2 2001 2 chr1A.!!$R2 1999
14 TraesCS1D01G007500 chr1A 5096032 5096556 524 True 390.000000 390 81.426000 782 1273 1 chr1A.!!$R1 491
15 TraesCS1D01G007500 chrUn 293592142 293593400 1258 True 490.000000 490 74.963000 1166 2465 1 chrUn.!!$R1 1299
16 TraesCS1D01G007500 chrUn 293578279 293579537 1258 False 484.000000 484 74.889000 1166 2465 1 chrUn.!!$F1 1299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 664 0.255890 ACTGAAGTGTTGTGTGGCCT 59.744 50.0 3.32 0.00 0.00 5.19 F
1831 7511 0.035458 ATTCGAAGCGATGGGGATCC 59.965 55.0 1.92 1.92 35.23 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 8030 0.107831 TATTACTGGATGGTGGCGCC 59.892 55.0 22.73 22.73 37.9 6.53 R
3252 9147 0.036010 ACAAGTGGCCTTCTGATCCG 60.036 55.0 3.32 0.00 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 186 3.614092 GGATGATCACTGTTGTCACCAT 58.386 45.455 0.00 0.00 0.00 3.55
322 350 0.665835 CCCTCTGGAACTCGAGATCG 59.334 60.000 21.68 5.32 41.45 3.69
364 664 0.255890 ACTGAAGTGTTGTGTGGCCT 59.744 50.000 3.32 0.00 0.00 5.19
367 667 2.075426 GAAGTGTTGTGTGGCCTGGC 62.075 60.000 11.05 11.05 0.00 4.85
418 796 2.029073 CCACAAGACCAGCGACGT 59.971 61.111 0.00 0.00 0.00 4.34
421 799 2.244651 ACAAGACCAGCGACGTTGC 61.245 57.895 20.54 20.54 0.00 4.17
422 800 2.665185 AAGACCAGCGACGTTGCC 60.665 61.111 24.15 8.87 34.65 4.52
426 804 3.726517 CCAGCGACGTTGCCAAGG 61.727 66.667 24.15 18.87 34.65 3.61
427 805 4.389576 CAGCGACGTTGCCAAGGC 62.390 66.667 24.15 3.61 42.35 4.35
437 815 2.753446 GCCAAGGCAGCTTCCTCC 60.753 66.667 5.03 0.00 41.49 4.30
438 816 3.085223 CCAAGGCAGCTTCCTCCT 58.915 61.111 5.03 0.00 34.82 3.69
440 818 1.377994 CAAGGCAGCTTCCTCCTGT 59.622 57.895 5.03 0.00 34.82 4.00
441 819 0.676151 CAAGGCAGCTTCCTCCTGTC 60.676 60.000 5.03 0.00 34.82 3.51
442 820 0.839853 AAGGCAGCTTCCTCCTGTCT 60.840 55.000 5.03 0.00 46.47 3.41
443 821 0.839853 AGGCAGCTTCCTCCTGTCTT 60.840 55.000 0.00 0.00 42.21 3.01
445 823 0.322975 GCAGCTTCCTCCTGTCTTCA 59.677 55.000 0.00 0.00 32.93 3.02
446 824 1.675415 GCAGCTTCCTCCTGTCTTCAG 60.675 57.143 0.00 0.00 41.01 3.02
447 825 0.612744 AGCTTCCTCCTGTCTTCAGC 59.387 55.000 0.00 0.00 40.09 4.26
449 827 1.065564 GCTTCCTCCTGTCTTCAGCAT 60.066 52.381 0.00 0.00 40.09 3.79
451 829 1.942776 TCCTCCTGTCTTCAGCATCA 58.057 50.000 0.00 0.00 40.09 3.07
455 833 1.980765 TCCTGTCTTCAGCATCAAGGT 59.019 47.619 0.00 0.00 40.09 3.50
457 835 2.486982 CCTGTCTTCAGCATCAAGGTTG 59.513 50.000 0.00 0.00 40.09 3.77
463 841 1.202915 TCAGCATCAAGGTTGCCTCAA 60.203 47.619 0.00 0.00 41.06 3.02
464 842 1.068055 CAGCATCAAGGTTGCCTCAAC 60.068 52.381 1.33 1.33 42.89 3.18
465 843 0.961019 GCATCAAGGTTGCCTCAACA 59.039 50.000 11.22 0.00 45.11 3.33
466 844 1.340889 GCATCAAGGTTGCCTCAACAA 59.659 47.619 11.22 0.00 45.11 2.83
885 3112 5.016831 TGCTGCTCTTCCGGAGATATAATA 58.983 41.667 3.34 0.00 44.45 0.98
926 3153 3.625764 GGGCGTCTAATGCATTTTAGTCA 59.374 43.478 18.75 0.00 32.21 3.41
929 3156 6.265577 GGCGTCTAATGCATTTTAGTCATTT 58.734 36.000 18.75 0.00 33.13 2.32
1179 4827 2.079170 TGCTAGCTAGTCCTGAGCAT 57.921 50.000 21.62 0.00 42.69 3.79
1195 4844 5.760253 CCTGAGCATTACAAATAGTACCCTG 59.240 44.000 0.00 0.00 30.91 4.45
1273 4927 2.176889 GACACACCTCCTAGCTACCAA 58.823 52.381 0.00 0.00 0.00 3.67
1287 4944 2.289694 GCTACCAACTTCTTCTGCCAGA 60.290 50.000 0.00 0.00 0.00 3.86
1336 4993 2.861147 AGCCTTTTAGTCCTGTCCAC 57.139 50.000 0.00 0.00 0.00 4.02
1831 7511 0.035458 ATTCGAAGCGATGGGGATCC 59.965 55.000 1.92 1.92 35.23 3.36
1872 7552 1.145531 CAGATGGCCATTATGGGTGGA 59.854 52.381 21.84 0.00 39.12 4.02
2007 7688 9.088512 CCTTCTGTAAGTACATACATTCAACTC 57.911 37.037 11.11 0.00 35.37 3.01
2008 7689 9.862371 CTTCTGTAAGTACATACATTCAACTCT 57.138 33.333 11.11 0.00 35.37 3.24
2069 7756 8.530311 CATGTATATCTAGTCCAGCTGAAAGAT 58.470 37.037 17.39 17.79 34.07 2.40
2086 7773 7.640240 GCTGAAAGATATTTAAACGTCATGGTC 59.360 37.037 0.00 0.00 34.07 4.02
2088 7775 8.664798 TGAAAGATATTTAAACGTCATGGTCTG 58.335 33.333 0.00 0.00 0.00 3.51
2096 7784 2.176045 ACGTCATGGTCTGGACATGTA 58.824 47.619 0.00 0.00 44.57 2.29
2151 7862 7.598493 GCTTATAAATTTCAAAGCCAGTTCACA 59.402 33.333 19.49 0.00 38.69 3.58
2154 7865 6.421377 AAATTTCAAAGCCAGTTCACAAAC 57.579 33.333 0.00 0.00 35.50 2.93
2158 7869 4.887748 TCAAAGCCAGTTCACAAACAAAA 58.112 34.783 0.00 0.00 37.88 2.44
2177 7888 7.203255 ACAAAACTAGTTTTAGTCATCTGGC 57.797 36.000 28.43 0.00 40.45 4.85
2178 7889 6.770785 ACAAAACTAGTTTTAGTCATCTGGCA 59.229 34.615 28.43 0.00 40.45 4.92
2179 7890 7.448469 ACAAAACTAGTTTTAGTCATCTGGCAT 59.552 33.333 28.43 3.74 40.45 4.40
2180 7891 8.299570 CAAAACTAGTTTTAGTCATCTGGCATT 58.700 33.333 28.43 3.13 40.45 3.56
2182 7893 9.686683 AAACTAGTTTTAGTCATCTGGCATTAT 57.313 29.630 15.22 0.00 39.20 1.28
2183 7894 8.668510 ACTAGTTTTAGTCATCTGGCATTATG 57.331 34.615 0.00 4.11 35.13 1.90
2184 7895 8.486210 ACTAGTTTTAGTCATCTGGCATTATGA 58.514 33.333 8.20 8.20 35.13 2.15
2287 8030 1.649664 GCAGGACACTACATCTGCTG 58.350 55.000 6.88 0.00 46.29 4.41
2363 8107 2.835764 ACGGGTAGCTATGAAAGGAACA 59.164 45.455 0.00 0.00 0.00 3.18
2376 8124 6.463995 TGAAAGGAACAATACAAGCTTGTT 57.536 33.333 35.20 18.53 46.55 2.83
2421 8169 3.364549 TGTGGATTTTTAGCCTGGGATG 58.635 45.455 0.00 0.00 0.00 3.51
2452 8200 4.300189 TCCAAAAATCCACGTCTGTTTG 57.700 40.909 0.00 0.00 0.00 2.93
2453 8201 3.697045 TCCAAAAATCCACGTCTGTTTGT 59.303 39.130 0.00 0.00 0.00 2.83
2454 8202 4.158764 TCCAAAAATCCACGTCTGTTTGTT 59.841 37.500 0.00 0.00 0.00 2.83
2455 8203 4.867608 CCAAAAATCCACGTCTGTTTGTTT 59.132 37.500 0.00 0.00 0.00 2.83
2456 8204 5.220378 CCAAAAATCCACGTCTGTTTGTTTG 60.220 40.000 0.00 0.00 0.00 2.93
2457 8205 4.712122 AAATCCACGTCTGTTTGTTTGT 57.288 36.364 0.00 0.00 0.00 2.83
2458 8206 4.712122 AATCCACGTCTGTTTGTTTGTT 57.288 36.364 0.00 0.00 0.00 2.83
2459 8207 5.821516 AATCCACGTCTGTTTGTTTGTTA 57.178 34.783 0.00 0.00 0.00 2.41
2460 8208 6.385649 AATCCACGTCTGTTTGTTTGTTAT 57.614 33.333 0.00 0.00 0.00 1.89
2461 8209 5.821516 TCCACGTCTGTTTGTTTGTTATT 57.178 34.783 0.00 0.00 0.00 1.40
2462 8210 6.197364 TCCACGTCTGTTTGTTTGTTATTT 57.803 33.333 0.00 0.00 0.00 1.40
2463 8211 6.622549 TCCACGTCTGTTTGTTTGTTATTTT 58.377 32.000 0.00 0.00 0.00 1.82
2464 8212 7.091443 TCCACGTCTGTTTGTTTGTTATTTTT 58.909 30.769 0.00 0.00 0.00 1.94
2465 8213 8.242053 TCCACGTCTGTTTGTTTGTTATTTTTA 58.758 29.630 0.00 0.00 0.00 1.52
2466 8214 9.026074 CCACGTCTGTTTGTTTGTTATTTTTAT 57.974 29.630 0.00 0.00 0.00 1.40
2557 8312 7.494625 TCGGTGTGGATCAGATAATAAAGTTTC 59.505 37.037 0.00 0.00 0.00 2.78
2558 8313 7.254795 CGGTGTGGATCAGATAATAAAGTTTCC 60.255 40.741 0.00 0.00 0.00 3.13
2687 8543 7.823745 ATTGGTGAGTTAAACACAAGAGAAT 57.176 32.000 13.50 4.04 39.65 2.40
2702 8558 9.293404 ACACAAGAGAATAAATGGATGATATGG 57.707 33.333 0.00 0.00 0.00 2.74
2707 8563 8.120538 AGAGAATAAATGGATGATATGGGCATT 58.879 33.333 0.00 0.00 0.00 3.56
2723 8579 9.812347 ATATGGGCATTAGATAAGAACATTTCA 57.188 29.630 0.00 0.00 0.00 2.69
2731 8587 8.709386 TTAGATAAGAACATTTCAGCTCTGAC 57.291 34.615 0.00 0.00 39.66 3.51
2736 8592 5.858381 AGAACATTTCAGCTCTGACTGTAA 58.142 37.500 12.10 1.04 39.66 2.41
2757 8613 9.180678 CTGTAACAACAAAATTTTCTTATCGCT 57.819 29.630 0.00 0.00 0.00 4.93
2817 8705 6.127196 GGATATTCCACCAAAAGGTTTATGCA 60.127 38.462 0.00 0.00 36.28 3.96
2821 8710 5.080337 TCCACCAAAAGGTTTATGCATACA 58.920 37.500 5.74 0.00 0.00 2.29
2850 8739 5.914033 TCTAGATCAAAAGGGATTGTACCG 58.086 41.667 0.00 0.00 0.00 4.02
2851 8740 3.279434 AGATCAAAAGGGATTGTACCGC 58.721 45.455 0.00 0.00 0.00 5.68
2852 8741 2.871096 TCAAAAGGGATTGTACCGCT 57.129 45.000 0.00 0.00 0.00 5.52
2909 8798 1.251527 AACGCAACCACCACCAACAA 61.252 50.000 0.00 0.00 0.00 2.83
2914 8803 2.872038 GCAACCACCACCAACAAAACAA 60.872 45.455 0.00 0.00 0.00 2.83
2920 8809 4.502962 CACCACCAACAAAACAAAGACAT 58.497 39.130 0.00 0.00 0.00 3.06
2924 8817 4.566360 CACCAACAAAACAAAGACATGGAC 59.434 41.667 0.00 0.00 0.00 4.02
2931 8824 7.480810 ACAAAACAAAGACATGGACTTAAGTC 58.519 34.615 24.73 24.73 44.04 3.01
2954 8847 0.393537 AAGGCATTCCTCCTCGCAAG 60.394 55.000 0.00 0.00 43.40 4.01
2991 8885 1.144298 ACTAGGGGAACAACCAACACC 59.856 52.381 0.00 0.00 41.20 4.16
3028 8922 3.454371 ACAGAGCGTTTTACACTGAGT 57.546 42.857 0.00 0.00 33.53 3.41
3033 8927 2.056577 GCGTTTTACACTGAGTACGCT 58.943 47.619 19.10 0.00 46.68 5.07
3056 8950 3.669939 AGCCAACACCCAGCTATTAAT 57.330 42.857 0.00 0.00 34.38 1.40
3088 8983 4.035208 CACCACTAAAGGAACAGACACAAC 59.965 45.833 0.00 0.00 0.00 3.32
3090 8985 3.247648 CACTAAAGGAACAGACACAACCG 59.752 47.826 0.00 0.00 0.00 4.44
3101 8996 2.687935 AGACACAACCGCAAAATCAAGT 59.312 40.909 0.00 0.00 0.00 3.16
3102 8997 3.042887 GACACAACCGCAAAATCAAGTC 58.957 45.455 0.00 0.00 0.00 3.01
3116 9011 2.191400 TCAAGTCTCCCATCTTCCAGG 58.809 52.381 0.00 0.00 0.00 4.45
3131 9026 2.696125 AGGCGGGGAATCCATGGT 60.696 61.111 12.58 0.00 34.36 3.55
3143 9038 0.899717 TCCATGGTGCCCAGCTTTTC 60.900 55.000 12.58 0.00 36.75 2.29
3160 9055 4.271049 GCTTTTCCTGGCTTGAAAAACTTC 59.729 41.667 13.16 3.60 40.19 3.01
3166 9061 4.142182 CCTGGCTTGAAAAACTTCAGTTGA 60.142 41.667 0.00 0.00 38.44 3.18
3172 9067 6.436843 TTGAAAAACTTCAGTTGAGACTCC 57.563 37.500 0.00 0.00 38.44 3.85
3173 9068 5.745227 TGAAAAACTTCAGTTGAGACTCCT 58.255 37.500 0.00 0.00 38.44 3.69
3189 9084 2.439507 ACTCCTTTCCAGAAGTCTTGCA 59.560 45.455 0.00 0.00 0.00 4.08
3202 9097 1.153647 CTTGCATCCCGTCGTAGCA 60.154 57.895 0.00 0.00 0.00 3.49
3214 9109 1.440353 CGTAGCACCAGTTTTGCGC 60.440 57.895 0.00 0.00 45.15 6.09
3219 9114 1.898574 CACCAGTTTTGCGCCCTCT 60.899 57.895 4.18 0.00 0.00 3.69
3240 9135 4.612264 TGTCACCTACAGGGAACTAAAC 57.388 45.455 0.00 0.00 40.21 2.01
3241 9136 3.968649 TGTCACCTACAGGGAACTAAACA 59.031 43.478 0.00 0.00 40.21 2.83
3242 9137 4.595781 TGTCACCTACAGGGAACTAAACAT 59.404 41.667 0.00 0.00 40.21 2.71
3243 9138 4.935808 GTCACCTACAGGGAACTAAACATG 59.064 45.833 0.00 0.00 40.21 3.21
3244 9139 4.841813 TCACCTACAGGGAACTAAACATGA 59.158 41.667 0.00 0.00 40.21 3.07
3245 9140 5.487488 TCACCTACAGGGAACTAAACATGAT 59.513 40.000 0.00 0.00 40.21 2.45
3246 9141 6.670464 TCACCTACAGGGAACTAAACATGATA 59.330 38.462 0.00 0.00 40.21 2.15
3247 9142 7.181305 TCACCTACAGGGAACTAAACATGATAA 59.819 37.037 0.00 0.00 40.21 1.75
3248 9143 7.280205 CACCTACAGGGAACTAAACATGATAAC 59.720 40.741 0.00 0.00 40.21 1.89
3249 9144 7.037873 ACCTACAGGGAACTAAACATGATAACA 60.038 37.037 0.00 0.00 40.21 2.41
3250 9145 7.495934 CCTACAGGGAACTAAACATGATAACAG 59.504 40.741 0.00 0.00 40.21 3.16
3251 9146 6.779860 ACAGGGAACTAAACATGATAACAGT 58.220 36.000 0.00 0.00 40.21 3.55
3252 9147 6.879458 ACAGGGAACTAAACATGATAACAGTC 59.121 38.462 0.00 0.00 40.21 3.51
3253 9148 6.036083 CAGGGAACTAAACATGATAACAGTCG 59.964 42.308 0.00 0.00 40.21 4.18
3254 9149 5.293569 GGGAACTAAACATGATAACAGTCGG 59.706 44.000 0.00 0.00 0.00 4.79
3255 9150 6.103997 GGAACTAAACATGATAACAGTCGGA 58.896 40.000 0.00 0.00 0.00 4.55
3256 9151 6.761714 GGAACTAAACATGATAACAGTCGGAT 59.238 38.462 0.00 0.00 0.00 4.18
3257 9152 7.042658 GGAACTAAACATGATAACAGTCGGATC 60.043 40.741 0.00 0.00 0.00 3.36
3258 9153 6.873997 ACTAAACATGATAACAGTCGGATCA 58.126 36.000 0.00 0.00 34.25 2.92
3259 9154 6.980978 ACTAAACATGATAACAGTCGGATCAG 59.019 38.462 0.00 0.00 33.29 2.90
3260 9155 5.598416 AACATGATAACAGTCGGATCAGA 57.402 39.130 0.00 0.00 33.29 3.27
3261 9156 5.598416 ACATGATAACAGTCGGATCAGAA 57.402 39.130 0.00 0.00 33.29 3.02
3262 9157 5.595885 ACATGATAACAGTCGGATCAGAAG 58.404 41.667 0.00 0.00 33.29 2.85
3263 9158 4.655762 TGATAACAGTCGGATCAGAAGG 57.344 45.455 0.00 0.00 0.00 3.46
3264 9159 2.961526 TAACAGTCGGATCAGAAGGC 57.038 50.000 0.00 0.00 0.00 4.35
3265 9160 0.250513 AACAGTCGGATCAGAAGGCC 59.749 55.000 0.00 0.00 0.00 5.19
3266 9161 0.904865 ACAGTCGGATCAGAAGGCCA 60.905 55.000 5.01 0.00 0.00 5.36
3267 9162 0.460987 CAGTCGGATCAGAAGGCCAC 60.461 60.000 5.01 0.00 0.00 5.01
3268 9163 0.616111 AGTCGGATCAGAAGGCCACT 60.616 55.000 5.01 0.00 0.00 4.00
3269 9164 0.250513 GTCGGATCAGAAGGCCACTT 59.749 55.000 5.01 0.00 40.34 3.16
3270 9165 0.250234 TCGGATCAGAAGGCCACTTG 59.750 55.000 5.01 0.00 36.97 3.16
3271 9166 0.036010 CGGATCAGAAGGCCACTTGT 60.036 55.000 5.01 0.00 36.97 3.16
3272 9167 1.457346 GGATCAGAAGGCCACTTGTG 58.543 55.000 5.01 0.00 46.29 3.33
3278 9173 3.788227 AGAAGGCCACTTGTGATAACA 57.212 42.857 5.01 0.00 36.97 2.41
3279 9174 3.679389 AGAAGGCCACTTGTGATAACAG 58.321 45.455 5.01 0.00 36.97 3.16
3280 9175 3.073062 AGAAGGCCACTTGTGATAACAGT 59.927 43.478 5.01 0.00 36.97 3.55
3281 9176 3.059352 AGGCCACTTGTGATAACAGTC 57.941 47.619 5.01 0.00 0.00 3.51
3282 9177 1.732259 GGCCACTTGTGATAACAGTCG 59.268 52.381 0.00 0.00 0.00 4.18
3283 9178 2.413837 GCCACTTGTGATAACAGTCGT 58.586 47.619 1.89 0.00 0.00 4.34
3284 9179 3.581755 GCCACTTGTGATAACAGTCGTA 58.418 45.455 1.89 0.00 0.00 3.43
3285 9180 3.612860 GCCACTTGTGATAACAGTCGTAG 59.387 47.826 1.89 0.00 0.00 3.51
3286 9181 3.612860 CCACTTGTGATAACAGTCGTAGC 59.387 47.826 1.89 0.00 0.00 3.58
3287 9182 4.234574 CACTTGTGATAACAGTCGTAGCA 58.765 43.478 0.00 0.00 0.00 3.49
3288 9183 4.090066 CACTTGTGATAACAGTCGTAGCAC 59.910 45.833 0.00 0.00 0.00 4.40
3289 9184 3.226346 TGTGATAACAGTCGTAGCACC 57.774 47.619 0.00 0.00 0.00 5.01
3290 9185 2.559231 TGTGATAACAGTCGTAGCACCA 59.441 45.455 0.00 0.00 0.00 4.17
3291 9186 3.179830 GTGATAACAGTCGTAGCACCAG 58.820 50.000 0.00 0.00 0.00 4.00
3292 9187 2.823747 TGATAACAGTCGTAGCACCAGT 59.176 45.455 0.00 0.00 0.00 4.00
3293 9188 3.119602 TGATAACAGTCGTAGCACCAGTC 60.120 47.826 0.00 0.00 0.00 3.51
3294 9189 1.037493 AACAGTCGTAGCACCAGTCA 58.963 50.000 0.00 0.00 0.00 3.41
3295 9190 1.257743 ACAGTCGTAGCACCAGTCAT 58.742 50.000 0.00 0.00 0.00 3.06
3296 9191 1.618837 ACAGTCGTAGCACCAGTCATT 59.381 47.619 0.00 0.00 0.00 2.57
3297 9192 2.823747 ACAGTCGTAGCACCAGTCATTA 59.176 45.455 0.00 0.00 0.00 1.90
3298 9193 3.257375 ACAGTCGTAGCACCAGTCATTAA 59.743 43.478 0.00 0.00 0.00 1.40
3299 9194 4.081642 ACAGTCGTAGCACCAGTCATTAAT 60.082 41.667 0.00 0.00 0.00 1.40
3300 9195 4.870426 CAGTCGTAGCACCAGTCATTAATT 59.130 41.667 0.00 0.00 0.00 1.40
3301 9196 5.005779 CAGTCGTAGCACCAGTCATTAATTC 59.994 44.000 0.00 0.00 0.00 2.17
3302 9197 4.270325 GTCGTAGCACCAGTCATTAATTCC 59.730 45.833 0.00 0.00 0.00 3.01
3303 9198 4.081365 TCGTAGCACCAGTCATTAATTCCA 60.081 41.667 0.00 0.00 0.00 3.53
3304 9199 4.816385 CGTAGCACCAGTCATTAATTCCAT 59.184 41.667 0.00 0.00 0.00 3.41
3305 9200 5.989168 CGTAGCACCAGTCATTAATTCCATA 59.011 40.000 0.00 0.00 0.00 2.74
3306 9201 6.481976 CGTAGCACCAGTCATTAATTCCATAA 59.518 38.462 0.00 0.00 0.00 1.90
3307 9202 6.949352 AGCACCAGTCATTAATTCCATAAG 57.051 37.500 0.00 0.00 0.00 1.73
3308 9203 5.300286 AGCACCAGTCATTAATTCCATAAGC 59.700 40.000 0.00 0.00 0.00 3.09
3309 9204 5.300286 GCACCAGTCATTAATTCCATAAGCT 59.700 40.000 0.00 0.00 0.00 3.74
3310 9205 6.486657 GCACCAGTCATTAATTCCATAAGCTA 59.513 38.462 0.00 0.00 0.00 3.32
3311 9206 7.520614 GCACCAGTCATTAATTCCATAAGCTAC 60.521 40.741 0.00 0.00 0.00 3.58
3312 9207 6.998673 ACCAGTCATTAATTCCATAAGCTACC 59.001 38.462 0.00 0.00 0.00 3.18
3313 9208 6.431234 CCAGTCATTAATTCCATAAGCTACCC 59.569 42.308 0.00 0.00 0.00 3.69
3314 9209 7.227156 CAGTCATTAATTCCATAAGCTACCCT 58.773 38.462 0.00 0.00 0.00 4.34
3315 9210 8.375506 CAGTCATTAATTCCATAAGCTACCCTA 58.624 37.037 0.00 0.00 0.00 3.53
3316 9211 8.945193 AGTCATTAATTCCATAAGCTACCCTAA 58.055 33.333 0.00 0.00 0.00 2.69
3317 9212 9.569122 GTCATTAATTCCATAAGCTACCCTAAA 57.431 33.333 0.00 0.00 0.00 1.85
3318 9213 9.569122 TCATTAATTCCATAAGCTACCCTAAAC 57.431 33.333 0.00 0.00 0.00 2.01
3319 9214 9.349713 CATTAATTCCATAAGCTACCCTAAACA 57.650 33.333 0.00 0.00 0.00 2.83
3321 9216 7.823745 AATTCCATAAGCTACCCTAAACATG 57.176 36.000 0.00 0.00 0.00 3.21
3322 9217 6.569127 TTCCATAAGCTACCCTAAACATGA 57.431 37.500 0.00 0.00 0.00 3.07
3323 9218 6.763715 TCCATAAGCTACCCTAAACATGAT 57.236 37.500 0.00 0.00 0.00 2.45
3324 9219 7.865530 TCCATAAGCTACCCTAAACATGATA 57.134 36.000 0.00 0.00 0.00 2.15
3325 9220 8.270137 TCCATAAGCTACCCTAAACATGATAA 57.730 34.615 0.00 0.00 0.00 1.75
3326 9221 8.154856 TCCATAAGCTACCCTAAACATGATAAC 58.845 37.037 0.00 0.00 0.00 1.89
3327 9222 7.936847 CCATAAGCTACCCTAAACATGATAACA 59.063 37.037 0.00 0.00 0.00 2.41
3328 9223 8.993121 CATAAGCTACCCTAAACATGATAACAG 58.007 37.037 0.00 0.00 0.00 3.16
3329 9224 6.561519 AGCTACCCTAAACATGATAACAGT 57.438 37.500 0.00 0.00 0.00 3.55
3330 9225 6.583562 AGCTACCCTAAACATGATAACAGTC 58.416 40.000 0.00 0.00 0.00 3.51
3331 9226 5.462398 GCTACCCTAAACATGATAACAGTCG 59.538 44.000 0.00 0.00 0.00 4.18
3332 9227 4.766375 ACCCTAAACATGATAACAGTCGG 58.234 43.478 0.00 0.00 0.00 4.79
3333 9228 4.468510 ACCCTAAACATGATAACAGTCGGA 59.531 41.667 0.00 0.00 0.00 4.55
3334 9229 5.130477 ACCCTAAACATGATAACAGTCGGAT 59.870 40.000 0.00 0.00 0.00 4.18
3335 9230 5.696724 CCCTAAACATGATAACAGTCGGATC 59.303 44.000 0.00 0.00 0.00 3.36
3336 9231 6.280643 CCTAAACATGATAACAGTCGGATCA 58.719 40.000 0.00 0.00 34.25 2.92
3337 9232 6.422100 CCTAAACATGATAACAGTCGGATCAG 59.578 42.308 0.00 0.00 33.29 2.90
3338 9233 5.598416 AACATGATAACAGTCGGATCAGA 57.402 39.130 0.00 0.00 33.29 3.27
3339 9234 5.598416 ACATGATAACAGTCGGATCAGAA 57.402 39.130 0.00 0.00 33.29 3.02
3340 9235 5.595885 ACATGATAACAGTCGGATCAGAAG 58.404 41.667 0.00 0.00 33.29 2.85
3341 9236 4.655762 TGATAACAGTCGGATCAGAAGG 57.344 45.455 0.00 0.00 0.00 3.46
3342 9237 2.961526 TAACAGTCGGATCAGAAGGC 57.038 50.000 0.00 0.00 0.00 4.35
3343 9238 0.250513 AACAGTCGGATCAGAAGGCC 59.749 55.000 0.00 0.00 0.00 5.19
3344 9239 0.904865 ACAGTCGGATCAGAAGGCCA 60.905 55.000 5.01 0.00 0.00 5.36
3345 9240 0.460987 CAGTCGGATCAGAAGGCCAC 60.461 60.000 5.01 0.00 0.00 5.01
3346 9241 0.616111 AGTCGGATCAGAAGGCCACT 60.616 55.000 5.01 0.00 0.00 4.00
3347 9242 0.250513 GTCGGATCAGAAGGCCACTT 59.749 55.000 5.01 0.00 40.34 3.16
3348 9243 0.250234 TCGGATCAGAAGGCCACTTG 59.750 55.000 5.01 0.00 36.97 3.16
3349 9244 0.036010 CGGATCAGAAGGCCACTTGT 60.036 55.000 5.01 0.00 36.97 3.16
3350 9245 1.457346 GGATCAGAAGGCCACTTGTG 58.543 55.000 5.01 0.00 46.29 3.33
3358 9253 3.826729 AGAAGGCCACTTGTGATTAAACC 59.173 43.478 5.01 0.00 36.97 3.27
3359 9254 3.237268 AGGCCACTTGTGATTAAACCA 57.763 42.857 5.01 0.00 0.00 3.67
3360 9255 3.778265 AGGCCACTTGTGATTAAACCAT 58.222 40.909 5.01 0.00 0.00 3.55
3361 9256 4.929479 AGGCCACTTGTGATTAAACCATA 58.071 39.130 5.01 0.00 0.00 2.74
3362 9257 4.705023 AGGCCACTTGTGATTAAACCATAC 59.295 41.667 5.01 0.00 0.00 2.39
3363 9258 4.705023 GGCCACTTGTGATTAAACCATACT 59.295 41.667 0.00 0.00 0.00 2.12
3364 9259 5.883673 GGCCACTTGTGATTAAACCATACTA 59.116 40.000 0.00 0.00 0.00 1.82
3365 9260 6.376018 GGCCACTTGTGATTAAACCATACTAA 59.624 38.462 0.00 0.00 0.00 2.24
3366 9261 7.094118 GGCCACTTGTGATTAAACCATACTAAA 60.094 37.037 0.00 0.00 0.00 1.85
3367 9262 8.466798 GCCACTTGTGATTAAACCATACTAAAT 58.533 33.333 1.89 0.00 0.00 1.40
3372 9267 8.528044 TGTGATTAAACCATACTAAATTCCCC 57.472 34.615 0.00 0.00 0.00 4.81
3373 9268 8.116669 TGTGATTAAACCATACTAAATTCCCCA 58.883 33.333 0.00 0.00 0.00 4.96
3374 9269 8.410912 GTGATTAAACCATACTAAATTCCCCAC 58.589 37.037 0.00 0.00 0.00 4.61
3375 9270 8.340757 TGATTAAACCATACTAAATTCCCCACT 58.659 33.333 0.00 0.00 0.00 4.00
3376 9271 9.197306 GATTAAACCATACTAAATTCCCCACTT 57.803 33.333 0.00 0.00 0.00 3.16
3377 9272 8.959676 TTAAACCATACTAAATTCCCCACTTT 57.040 30.769 0.00 0.00 0.00 2.66
3378 9273 7.476540 AAACCATACTAAATTCCCCACTTTC 57.523 36.000 0.00 0.00 0.00 2.62
3379 9274 5.516044 ACCATACTAAATTCCCCACTTTCC 58.484 41.667 0.00 0.00 0.00 3.13
3380 9275 5.015817 ACCATACTAAATTCCCCACTTTCCA 59.984 40.000 0.00 0.00 0.00 3.53
3381 9276 5.955355 CCATACTAAATTCCCCACTTTCCAA 59.045 40.000 0.00 0.00 0.00 3.53
3382 9277 6.439058 CCATACTAAATTCCCCACTTTCCAAA 59.561 38.462 0.00 0.00 0.00 3.28
3383 9278 5.801531 ACTAAATTCCCCACTTTCCAAAC 57.198 39.130 0.00 0.00 0.00 2.93
3384 9279 4.591498 ACTAAATTCCCCACTTTCCAAACC 59.409 41.667 0.00 0.00 0.00 3.27
3385 9280 2.785357 ATTCCCCACTTTCCAAACCA 57.215 45.000 0.00 0.00 0.00 3.67
3386 9281 2.785357 TTCCCCACTTTCCAAACCAT 57.215 45.000 0.00 0.00 0.00 3.55
3387 9282 2.785357 TCCCCACTTTCCAAACCATT 57.215 45.000 0.00 0.00 0.00 3.16
3388 9283 3.905493 TCCCCACTTTCCAAACCATTA 57.095 42.857 0.00 0.00 0.00 1.90
3389 9284 4.412060 TCCCCACTTTCCAAACCATTAT 57.588 40.909 0.00 0.00 0.00 1.28
3390 9285 4.349365 TCCCCACTTTCCAAACCATTATC 58.651 43.478 0.00 0.00 0.00 1.75
3391 9286 4.093011 CCCCACTTTCCAAACCATTATCA 58.907 43.478 0.00 0.00 0.00 2.15
3395 9290 6.239572 CCCACTTTCCAAACCATTATCAAAGT 60.240 38.462 0.00 0.00 33.84 2.66
3401 9296 7.841282 TCCAAACCATTATCAAAGTAAACCA 57.159 32.000 0.00 0.00 0.00 3.67
3416 9311 7.954666 AAGTAAACCAGCAACATATTATGGT 57.045 32.000 8.48 0.00 46.05 3.55
3472 9367 7.645058 ATTCATTGGATATTGAAACCTCGTT 57.355 32.000 0.00 0.00 35.63 3.85
3473 9368 8.746052 ATTCATTGGATATTGAAACCTCGTTA 57.254 30.769 0.00 0.00 35.63 3.18
3474 9369 7.786178 TCATTGGATATTGAAACCTCGTTAG 57.214 36.000 0.00 0.00 0.00 2.34
3475 9370 7.561251 TCATTGGATATTGAAACCTCGTTAGA 58.439 34.615 0.00 0.00 0.00 2.10
3476 9371 8.210946 TCATTGGATATTGAAACCTCGTTAGAT 58.789 33.333 0.00 0.00 0.00 1.98
3477 9372 9.489084 CATTGGATATTGAAACCTCGTTAGATA 57.511 33.333 0.00 0.00 0.00 1.98
3503 9398 3.449322 TTTCGAGAGTACGCAAAATGC 57.551 42.857 0.00 0.00 40.69 3.56
3515 9410 3.487563 GCAAAATGCGTACCTTAGCTT 57.512 42.857 0.00 0.00 31.71 3.74
3516 9411 3.833442 GCAAAATGCGTACCTTAGCTTT 58.167 40.909 0.00 0.00 31.71 3.51
3517 9412 4.976987 GCAAAATGCGTACCTTAGCTTTA 58.023 39.130 0.00 0.00 31.71 1.85
3518 9413 5.578776 GCAAAATGCGTACCTTAGCTTTAT 58.421 37.500 0.00 0.00 31.71 1.40
3519 9414 6.721321 GCAAAATGCGTACCTTAGCTTTATA 58.279 36.000 0.00 0.00 31.71 0.98
3520 9415 6.851330 GCAAAATGCGTACCTTAGCTTTATAG 59.149 38.462 0.00 0.00 31.71 1.31
3521 9416 7.254658 GCAAAATGCGTACCTTAGCTTTATAGA 60.255 37.037 0.00 0.00 31.71 1.98
3522 9417 7.710766 AAATGCGTACCTTAGCTTTATAGAC 57.289 36.000 0.00 0.00 31.78 2.59
3523 9418 4.852138 TGCGTACCTTAGCTTTATAGACG 58.148 43.478 0.00 0.00 0.00 4.18
3524 9419 4.576053 TGCGTACCTTAGCTTTATAGACGA 59.424 41.667 0.00 0.00 0.00 4.20
3525 9420 5.066375 TGCGTACCTTAGCTTTATAGACGAA 59.934 40.000 0.00 0.00 0.00 3.85
3526 9421 5.973565 GCGTACCTTAGCTTTATAGACGAAA 59.026 40.000 0.00 0.00 0.00 3.46
3527 9422 6.142002 GCGTACCTTAGCTTTATAGACGAAAG 59.858 42.308 0.00 0.00 37.04 2.62
3528 9423 7.412853 CGTACCTTAGCTTTATAGACGAAAGA 58.587 38.462 0.00 0.00 36.22 2.52
3529 9424 7.587028 CGTACCTTAGCTTTATAGACGAAAGAG 59.413 40.741 0.00 0.00 36.22 2.85
3530 9425 7.642082 ACCTTAGCTTTATAGACGAAAGAGA 57.358 36.000 0.00 0.00 36.22 3.10
3531 9426 7.708998 ACCTTAGCTTTATAGACGAAAGAGAG 58.291 38.462 0.00 0.00 36.22 3.20
3532 9427 6.639279 CCTTAGCTTTATAGACGAAAGAGAGC 59.361 42.308 0.00 0.00 36.22 4.09
3533 9428 5.845391 AGCTTTATAGACGAAAGAGAGCT 57.155 39.130 0.00 0.00 36.22 4.09
3534 9429 6.945938 AGCTTTATAGACGAAAGAGAGCTA 57.054 37.500 0.00 0.00 36.30 3.32
3535 9430 7.519032 AGCTTTATAGACGAAAGAGAGCTAT 57.481 36.000 0.00 0.00 36.30 2.97
3536 9431 7.367285 AGCTTTATAGACGAAAGAGAGCTATG 58.633 38.462 0.00 0.00 36.30 2.23
3537 9432 7.013846 AGCTTTATAGACGAAAGAGAGCTATGT 59.986 37.037 0.00 0.00 36.30 2.29
3538 9433 8.291032 GCTTTATAGACGAAAGAGAGCTATGTA 58.709 37.037 0.00 0.00 36.22 2.29
3539 9434 9.601971 CTTTATAGACGAAAGAGAGCTATGTAC 57.398 37.037 0.00 0.00 36.22 2.90
3540 9435 8.672823 TTATAGACGAAAGAGAGCTATGTACA 57.327 34.615 0.00 0.00 0.00 2.90
3541 9436 5.899120 AGACGAAAGAGAGCTATGTACAA 57.101 39.130 0.00 0.00 0.00 2.41
3542 9437 5.885881 AGACGAAAGAGAGCTATGTACAAG 58.114 41.667 0.00 0.00 0.00 3.16
3543 9438 5.648526 AGACGAAAGAGAGCTATGTACAAGA 59.351 40.000 0.00 0.00 0.00 3.02
3544 9439 6.151312 AGACGAAAGAGAGCTATGTACAAGAA 59.849 38.462 0.00 0.00 0.00 2.52
3545 9440 6.688578 ACGAAAGAGAGCTATGTACAAGAAA 58.311 36.000 0.00 0.00 0.00 2.52
3546 9441 7.324178 ACGAAAGAGAGCTATGTACAAGAAAT 58.676 34.615 0.00 0.00 0.00 2.17
3547 9442 8.467598 ACGAAAGAGAGCTATGTACAAGAAATA 58.532 33.333 0.00 0.00 0.00 1.40
3548 9443 8.747666 CGAAAGAGAGCTATGTACAAGAAATAC 58.252 37.037 0.00 0.00 0.00 1.89
3549 9444 9.587772 GAAAGAGAGCTATGTACAAGAAATACA 57.412 33.333 0.00 0.00 36.98 2.29
3550 9445 9.593134 AAAGAGAGCTATGTACAAGAAATACAG 57.407 33.333 0.00 0.00 36.04 2.74
3551 9446 8.526667 AGAGAGCTATGTACAAGAAATACAGA 57.473 34.615 0.00 0.00 36.04 3.41
3552 9447 8.410141 AGAGAGCTATGTACAAGAAATACAGAC 58.590 37.037 0.00 0.00 36.04 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 8.243426 GCTTCAACATGAATTTTGTATGTCCTA 58.757 33.333 0.00 0.00 35.59 2.94
77 97 3.557054 GGATAGTTCCATTGGCGCAGATA 60.557 47.826 10.83 0.00 42.12 1.98
79 99 1.475034 GGATAGTTCCATTGGCGCAGA 60.475 52.381 10.83 0.00 42.12 4.26
164 186 6.535540 ACTCGTGATCTAGCCTCTATTAGAA 58.464 40.000 0.00 0.00 30.33 2.10
322 350 3.146066 TGGTGGTGCTCTTCAAATACAC 58.854 45.455 0.00 0.00 0.00 2.90
364 664 1.841302 AAGACATGAGGAAGCGGCCA 61.841 55.000 2.24 0.00 0.00 5.36
367 667 1.089920 CCAAAGACATGAGGAAGCGG 58.910 55.000 0.00 0.00 0.00 5.52
377 686 1.822990 CAGCCTTGATGCCAAAGACAT 59.177 47.619 0.00 0.00 0.00 3.06
402 711 1.564622 CAACGTCGCTGGTCTTGTG 59.435 57.895 0.00 0.00 0.00 3.33
418 796 1.604593 GAGGAAGCTGCCTTGGCAA 60.605 57.895 16.72 0.00 38.73 4.52
421 799 1.378250 CAGGAGGAAGCTGCCTTGG 60.378 63.158 16.72 3.57 38.73 3.61
422 800 0.676151 GACAGGAGGAAGCTGCCTTG 60.676 60.000 16.72 13.16 38.73 3.61
426 804 0.322975 TGAAGACAGGAGGAAGCTGC 59.677 55.000 0.00 0.00 0.00 5.25
427 805 1.675415 GCTGAAGACAGGAGGAAGCTG 60.675 57.143 0.00 0.00 43.62 4.24
428 806 0.612744 GCTGAAGACAGGAGGAAGCT 59.387 55.000 0.00 0.00 43.62 3.74
429 807 0.322975 TGCTGAAGACAGGAGGAAGC 59.677 55.000 0.00 0.00 43.62 3.86
430 808 2.235650 TGATGCTGAAGACAGGAGGAAG 59.764 50.000 0.00 0.00 46.67 3.46
431 809 2.259917 TGATGCTGAAGACAGGAGGAA 58.740 47.619 0.00 0.00 46.67 3.36
434 812 2.027377 ACCTTGATGCTGAAGACAGGAG 60.027 50.000 0.00 0.00 46.67 3.69
436 814 2.486472 ACCTTGATGCTGAAGACAGG 57.514 50.000 0.00 0.00 43.62 4.00
437 815 2.095364 GCAACCTTGATGCTGAAGACAG 60.095 50.000 0.00 0.00 45.91 3.51
438 816 1.881973 GCAACCTTGATGCTGAAGACA 59.118 47.619 0.00 0.00 40.64 3.41
440 818 1.074405 AGGCAACCTTGATGCTGAAGA 59.926 47.619 0.00 0.00 43.34 2.87
441 819 1.471684 GAGGCAACCTTGATGCTGAAG 59.528 52.381 0.00 0.00 43.34 3.02
442 820 1.202915 TGAGGCAACCTTGATGCTGAA 60.203 47.619 0.00 0.00 43.34 3.02
443 821 0.401356 TGAGGCAACCTTGATGCTGA 59.599 50.000 0.00 0.00 43.34 4.26
445 823 1.251251 GTTGAGGCAACCTTGATGCT 58.749 50.000 0.00 0.00 43.34 3.79
446 824 0.961019 TGTTGAGGCAACCTTGATGC 59.039 50.000 7.73 0.00 42.96 3.91
447 825 3.293311 CTTGTTGAGGCAACCTTGATG 57.707 47.619 7.73 0.00 42.96 3.07
885 3112 8.157476 AGACGCCCATTATTATCTTTACATCTT 58.843 33.333 0.00 0.00 0.00 2.40
900 3127 5.825679 ACTAAAATGCATTAGACGCCCATTA 59.174 36.000 13.39 3.52 36.57 1.90
970 4588 5.715279 GCCTTTTGAGGAACTACCCTTTTAT 59.285 40.000 0.00 0.00 41.55 1.40
971 4589 5.074804 GCCTTTTGAGGAACTACCCTTTTA 58.925 41.667 0.00 0.00 41.55 1.52
1179 4827 6.499350 ACTTGAGTCCAGGGTACTATTTGTAA 59.501 38.462 0.00 0.00 32.25 2.41
1220 4871 2.675844 TCTTTCCTTTGTCGTGTGTGTG 59.324 45.455 0.00 0.00 0.00 3.82
1273 4927 3.823304 GGATTTTGTCTGGCAGAAGAAGT 59.177 43.478 20.62 13.15 0.00 3.01
1287 4944 3.633986 GCCATTGCTAGCTAGGATTTTGT 59.366 43.478 22.10 1.44 33.53 2.83
1336 4993 1.688735 TGGAATGCAGGACTAGGATCG 59.311 52.381 0.00 0.00 0.00 3.69
1712 5374 7.681939 TGAGACCTTTGTAACAAACCATATC 57.318 36.000 0.00 0.00 0.00 1.63
1831 7511 2.145536 GCCTTGGCCTGTTTGAAAATG 58.854 47.619 3.32 0.00 0.00 2.32
1872 7552 2.716217 GCCATAGCAAACTCTCCAGTT 58.284 47.619 0.00 0.00 45.43 3.16
2069 7756 5.795972 TGTCCAGACCATGACGTTTAAATA 58.204 37.500 0.00 0.00 34.18 1.40
2086 7773 7.113658 ACCTTAACTACATCTACATGTCCAG 57.886 40.000 0.00 0.00 42.66 3.86
2088 7775 9.477484 CATAACCTTAACTACATCTACATGTCC 57.523 37.037 0.00 0.00 42.66 4.02
2151 7862 8.135529 GCCAGATGACTAAAACTAGTTTTGTTT 58.864 33.333 33.75 21.43 42.18 2.83
2154 7865 7.202016 TGCCAGATGACTAAAACTAGTTTTG 57.798 36.000 33.75 26.12 42.18 2.44
2158 7869 8.486210 TCATAATGCCAGATGACTAAAACTAGT 58.514 33.333 0.00 0.00 0.00 2.57
2287 8030 0.107831 TATTACTGGATGGTGGCGCC 59.892 55.000 22.73 22.73 37.90 6.53
2363 8107 9.830975 AAAGGAAAACATTAACAAGCTTGTATT 57.169 25.926 31.31 19.59 41.31 1.89
2421 8169 8.674607 AGACGTGGATTTTTGGATTAATAGAAC 58.325 33.333 0.00 0.00 0.00 3.01
2557 8312 9.345517 CTTCATATTACATTGACAACACAAAGG 57.654 33.333 0.00 0.00 33.44 3.11
2698 8554 9.288576 CTGAAATGTTCTTATCTAATGCCCATA 57.711 33.333 0.00 0.00 0.00 2.74
2702 8558 7.228308 AGAGCTGAAATGTTCTTATCTAATGCC 59.772 37.037 0.00 0.00 0.00 4.40
2707 8563 7.978414 CAGTCAGAGCTGAAATGTTCTTATCTA 59.022 37.037 1.08 0.00 41.85 1.98
2723 8579 6.699575 AATTTTGTTGTTACAGTCAGAGCT 57.300 33.333 0.00 0.00 35.28 4.09
2731 8587 9.180678 AGCGATAAGAAAATTTTGTTGTTACAG 57.819 29.630 20.30 9.80 35.28 2.74
2757 8613 6.045955 GGCCAACTTTTTGAGTGAACATTTA 58.954 36.000 0.00 0.00 39.00 1.40
2766 8622 0.106419 TCCGGGCCAACTTTTTGAGT 60.106 50.000 4.39 0.00 41.47 3.41
2829 8718 4.163458 AGCGGTACAATCCCTTTTGATCTA 59.837 41.667 0.00 0.00 0.00 1.98
2830 8719 3.054361 AGCGGTACAATCCCTTTTGATCT 60.054 43.478 0.00 0.00 0.00 2.75
2831 8720 3.065371 CAGCGGTACAATCCCTTTTGATC 59.935 47.826 0.00 0.00 0.00 2.92
2844 8733 6.993786 TTCATTAATGAAATCAGCGGTACA 57.006 33.333 25.11 1.41 43.26 2.90
2869 8758 6.613953 GCGTTTTCGTTGTAAAAACAACTTGT 60.614 34.615 16.70 0.00 45.53 3.16
2875 8764 4.089636 GGTTGCGTTTTCGTTGTAAAAACA 59.910 37.500 10.87 0.00 43.52 2.83
2887 8776 0.173708 TTGGTGGTGGTTGCGTTTTC 59.826 50.000 0.00 0.00 0.00 2.29
2909 8798 7.881775 AAGACTTAAGTCCATGTCTTTGTTT 57.118 32.000 28.05 11.26 44.32 2.83
2920 8809 5.944007 GGAATGCCTTAAAGACTTAAGTCCA 59.056 40.000 28.05 18.35 45.85 4.02
2942 8835 2.427245 GCTAGGCTTGCGAGGAGGA 61.427 63.158 4.95 0.00 0.00 3.71
2954 8847 0.248843 AGTCTGTTGCTCAGCTAGGC 59.751 55.000 0.00 0.00 43.32 3.93
3011 8905 2.090195 GCGTACTCAGTGTAAAACGCTC 59.910 50.000 13.60 0.00 45.36 5.03
3028 8922 1.302192 GGGTGTTGGCTTCAGCGTA 60.302 57.895 0.00 0.00 43.26 4.42
3033 8927 0.698238 ATAGCTGGGTGTTGGCTTCA 59.302 50.000 0.00 0.00 37.50 3.02
3056 8950 2.171659 TCCTTTAGTGGTGTTGTGCTGA 59.828 45.455 0.00 0.00 0.00 4.26
3088 8983 1.533625 TGGGAGACTTGATTTTGCGG 58.466 50.000 0.00 0.00 0.00 5.69
3090 8985 4.142293 GGAAGATGGGAGACTTGATTTTGC 60.142 45.833 0.00 0.00 0.00 3.68
3101 8996 2.066393 CCGCCTGGAAGATGGGAGA 61.066 63.158 0.00 0.00 37.49 3.71
3102 8997 2.507944 CCGCCTGGAAGATGGGAG 59.492 66.667 0.00 0.00 37.49 4.30
3116 9011 3.219198 GCACCATGGATTCCCCGC 61.219 66.667 21.47 5.17 37.93 6.13
3131 9026 2.601367 GCCAGGAAAAGCTGGGCA 60.601 61.111 0.00 0.00 44.01 5.36
3143 9038 4.114794 CAACTGAAGTTTTTCAAGCCAGG 58.885 43.478 0.00 0.00 42.48 4.45
3160 9055 4.202305 ACTTCTGGAAAGGAGTCTCAACTG 60.202 45.833 1.47 0.00 35.28 3.16
3166 9061 3.244387 GCAAGACTTCTGGAAAGGAGTCT 60.244 47.826 10.35 10.35 38.13 3.24
3172 9067 2.751806 GGGATGCAAGACTTCTGGAAAG 59.248 50.000 0.00 0.00 0.00 2.62
3173 9068 2.795329 GGGATGCAAGACTTCTGGAAA 58.205 47.619 0.00 0.00 0.00 3.13
3189 9084 1.255667 AACTGGTGCTACGACGGGAT 61.256 55.000 0.00 0.00 0.00 3.85
3202 9097 1.898574 CAGAGGGCGCAAAACTGGT 60.899 57.895 10.83 0.00 0.00 4.00
3219 9114 3.968649 TGTTTAGTTCCCTGTAGGTGACA 59.031 43.478 0.00 0.00 36.75 3.58
3237 9132 5.977635 TCTGATCCGACTGTTATCATGTTT 58.022 37.500 0.00 0.00 0.00 2.83
3238 9133 5.598416 TCTGATCCGACTGTTATCATGTT 57.402 39.130 0.00 0.00 0.00 2.71
3239 9134 5.452496 CCTTCTGATCCGACTGTTATCATGT 60.452 44.000 0.00 0.00 0.00 3.21
3240 9135 4.987285 CCTTCTGATCCGACTGTTATCATG 59.013 45.833 0.00 0.00 0.00 3.07
3241 9136 4.502259 GCCTTCTGATCCGACTGTTATCAT 60.502 45.833 0.00 0.00 0.00 2.45
3242 9137 3.181475 GCCTTCTGATCCGACTGTTATCA 60.181 47.826 0.00 0.00 0.00 2.15
3243 9138 3.385577 GCCTTCTGATCCGACTGTTATC 58.614 50.000 0.00 0.00 0.00 1.75
3244 9139 2.103263 GGCCTTCTGATCCGACTGTTAT 59.897 50.000 0.00 0.00 0.00 1.89
3245 9140 1.480954 GGCCTTCTGATCCGACTGTTA 59.519 52.381 0.00 0.00 0.00 2.41
3246 9141 0.250513 GGCCTTCTGATCCGACTGTT 59.749 55.000 0.00 0.00 0.00 3.16
3247 9142 0.904865 TGGCCTTCTGATCCGACTGT 60.905 55.000 3.32 0.00 0.00 3.55
3248 9143 0.460987 GTGGCCTTCTGATCCGACTG 60.461 60.000 3.32 0.00 0.00 3.51
3249 9144 0.616111 AGTGGCCTTCTGATCCGACT 60.616 55.000 3.32 0.00 0.00 4.18
3250 9145 0.250513 AAGTGGCCTTCTGATCCGAC 59.749 55.000 3.32 0.00 0.00 4.79
3251 9146 0.250234 CAAGTGGCCTTCTGATCCGA 59.750 55.000 3.32 0.00 0.00 4.55
3252 9147 0.036010 ACAAGTGGCCTTCTGATCCG 60.036 55.000 3.32 0.00 0.00 4.18
3253 9148 1.003580 TCACAAGTGGCCTTCTGATCC 59.996 52.381 3.32 0.00 0.00 3.36
3254 9149 2.479566 TCACAAGTGGCCTTCTGATC 57.520 50.000 3.32 0.00 0.00 2.92
3255 9150 4.263462 TGTTATCACAAGTGGCCTTCTGAT 60.263 41.667 3.32 2.44 39.03 2.90
3256 9151 3.072330 TGTTATCACAAGTGGCCTTCTGA 59.928 43.478 3.32 0.00 31.39 3.27
3257 9152 3.411446 TGTTATCACAAGTGGCCTTCTG 58.589 45.455 3.32 0.00 0.00 3.02
3258 9153 3.073062 ACTGTTATCACAAGTGGCCTTCT 59.927 43.478 3.32 0.00 30.36 2.85
3259 9154 3.412386 ACTGTTATCACAAGTGGCCTTC 58.588 45.455 3.32 0.00 30.36 3.46
3260 9155 3.412386 GACTGTTATCACAAGTGGCCTT 58.588 45.455 3.32 0.00 30.36 4.35
3261 9156 2.612972 CGACTGTTATCACAAGTGGCCT 60.613 50.000 3.32 0.00 30.36 5.19
3262 9157 1.732259 CGACTGTTATCACAAGTGGCC 59.268 52.381 0.00 0.00 30.36 5.36
3263 9158 2.413837 ACGACTGTTATCACAAGTGGC 58.586 47.619 0.00 0.00 30.36 5.01
3264 9159 3.612860 GCTACGACTGTTATCACAAGTGG 59.387 47.826 0.00 0.00 30.36 4.00
3265 9160 4.090066 GTGCTACGACTGTTATCACAAGTG 59.910 45.833 0.00 0.00 30.36 3.16
3266 9161 4.235360 GTGCTACGACTGTTATCACAAGT 58.765 43.478 0.00 0.00 30.36 3.16
3267 9162 3.612860 GGTGCTACGACTGTTATCACAAG 59.387 47.826 0.00 0.00 30.36 3.16
3268 9163 3.006003 TGGTGCTACGACTGTTATCACAA 59.994 43.478 0.00 0.00 30.36 3.33
3269 9164 2.559231 TGGTGCTACGACTGTTATCACA 59.441 45.455 0.00 0.00 0.00 3.58
3270 9165 3.179830 CTGGTGCTACGACTGTTATCAC 58.820 50.000 0.00 0.00 0.00 3.06
3271 9166 2.823747 ACTGGTGCTACGACTGTTATCA 59.176 45.455 0.00 0.00 0.00 2.15
3272 9167 3.119602 TGACTGGTGCTACGACTGTTATC 60.120 47.826 0.00 0.00 0.00 1.75
3273 9168 2.823747 TGACTGGTGCTACGACTGTTAT 59.176 45.455 0.00 0.00 0.00 1.89
3274 9169 2.232399 TGACTGGTGCTACGACTGTTA 58.768 47.619 0.00 0.00 0.00 2.41
3275 9170 1.037493 TGACTGGTGCTACGACTGTT 58.963 50.000 0.00 0.00 0.00 3.16
3276 9171 1.257743 ATGACTGGTGCTACGACTGT 58.742 50.000 0.00 0.00 0.00 3.55
3277 9172 2.370281 AATGACTGGTGCTACGACTG 57.630 50.000 0.00 0.00 0.00 3.51
3278 9173 4.737855 ATTAATGACTGGTGCTACGACT 57.262 40.909 0.00 0.00 0.00 4.18
3279 9174 4.270325 GGAATTAATGACTGGTGCTACGAC 59.730 45.833 0.00 0.00 0.00 4.34
3280 9175 4.081365 TGGAATTAATGACTGGTGCTACGA 60.081 41.667 0.00 0.00 0.00 3.43
3281 9176 4.188462 TGGAATTAATGACTGGTGCTACG 58.812 43.478 0.00 0.00 0.00 3.51
3282 9177 7.520614 GCTTATGGAATTAATGACTGGTGCTAC 60.521 40.741 0.00 0.00 0.00 3.58
3283 9178 6.486657 GCTTATGGAATTAATGACTGGTGCTA 59.513 38.462 0.00 0.00 0.00 3.49
3284 9179 5.300286 GCTTATGGAATTAATGACTGGTGCT 59.700 40.000 0.00 0.00 0.00 4.40
3285 9180 5.300286 AGCTTATGGAATTAATGACTGGTGC 59.700 40.000 0.00 0.00 0.00 5.01
3286 9181 6.949352 AGCTTATGGAATTAATGACTGGTG 57.051 37.500 0.00 0.00 0.00 4.17
3287 9182 6.998673 GGTAGCTTATGGAATTAATGACTGGT 59.001 38.462 0.00 0.00 0.00 4.00
3288 9183 6.431234 GGGTAGCTTATGGAATTAATGACTGG 59.569 42.308 0.00 0.00 0.00 4.00
3289 9184 7.227156 AGGGTAGCTTATGGAATTAATGACTG 58.773 38.462 0.00 0.00 0.00 3.51
3290 9185 7.394144 AGGGTAGCTTATGGAATTAATGACT 57.606 36.000 0.00 0.00 0.00 3.41
3291 9186 9.569122 TTTAGGGTAGCTTATGGAATTAATGAC 57.431 33.333 0.00 0.00 0.00 3.06
3292 9187 9.569122 GTTTAGGGTAGCTTATGGAATTAATGA 57.431 33.333 0.00 0.00 0.00 2.57
3293 9188 9.349713 TGTTTAGGGTAGCTTATGGAATTAATG 57.650 33.333 0.00 0.00 0.00 1.90
3295 9190 9.349713 CATGTTTAGGGTAGCTTATGGAATTAA 57.650 33.333 0.00 0.00 0.00 1.40
3296 9191 8.719596 TCATGTTTAGGGTAGCTTATGGAATTA 58.280 33.333 0.00 0.00 0.00 1.40
3297 9192 7.582719 TCATGTTTAGGGTAGCTTATGGAATT 58.417 34.615 0.00 0.00 0.00 2.17
3298 9193 7.149202 TCATGTTTAGGGTAGCTTATGGAAT 57.851 36.000 0.00 0.00 0.00 3.01
3299 9194 6.569127 TCATGTTTAGGGTAGCTTATGGAA 57.431 37.500 0.00 0.00 0.00 3.53
3300 9195 6.763715 ATCATGTTTAGGGTAGCTTATGGA 57.236 37.500 0.00 0.00 0.00 3.41
3301 9196 7.936847 TGTTATCATGTTTAGGGTAGCTTATGG 59.063 37.037 0.00 0.00 0.00 2.74
3302 9197 8.902540 TGTTATCATGTTTAGGGTAGCTTATG 57.097 34.615 0.00 0.00 0.00 1.90
3303 9198 8.714906 ACTGTTATCATGTTTAGGGTAGCTTAT 58.285 33.333 0.00 0.00 0.00 1.73
3304 9199 8.086143 ACTGTTATCATGTTTAGGGTAGCTTA 57.914 34.615 0.00 0.00 0.00 3.09
3305 9200 6.958767 ACTGTTATCATGTTTAGGGTAGCTT 58.041 36.000 0.00 0.00 0.00 3.74
3306 9201 6.561519 ACTGTTATCATGTTTAGGGTAGCT 57.438 37.500 0.00 0.00 0.00 3.32
3307 9202 5.462398 CGACTGTTATCATGTTTAGGGTAGC 59.538 44.000 0.00 0.00 0.00 3.58
3308 9203 5.983720 CCGACTGTTATCATGTTTAGGGTAG 59.016 44.000 0.00 0.00 0.00 3.18
3309 9204 5.657745 TCCGACTGTTATCATGTTTAGGGTA 59.342 40.000 0.00 0.00 0.00 3.69
3310 9205 4.468510 TCCGACTGTTATCATGTTTAGGGT 59.531 41.667 0.00 0.00 0.00 4.34
3311 9206 5.018539 TCCGACTGTTATCATGTTTAGGG 57.981 43.478 0.00 0.00 0.00 3.53
3312 9207 6.280643 TGATCCGACTGTTATCATGTTTAGG 58.719 40.000 0.00 0.00 0.00 2.69
3313 9208 7.203218 TCTGATCCGACTGTTATCATGTTTAG 58.797 38.462 0.00 0.00 0.00 1.85
3314 9209 7.107639 TCTGATCCGACTGTTATCATGTTTA 57.892 36.000 0.00 0.00 0.00 2.01
3315 9210 5.977635 TCTGATCCGACTGTTATCATGTTT 58.022 37.500 0.00 0.00 0.00 2.83
3316 9211 5.598416 TCTGATCCGACTGTTATCATGTT 57.402 39.130 0.00 0.00 0.00 2.71
3317 9212 5.452496 CCTTCTGATCCGACTGTTATCATGT 60.452 44.000 0.00 0.00 0.00 3.21
3318 9213 4.987285 CCTTCTGATCCGACTGTTATCATG 59.013 45.833 0.00 0.00 0.00 3.07
3319 9214 4.502259 GCCTTCTGATCCGACTGTTATCAT 60.502 45.833 0.00 0.00 0.00 2.45
3320 9215 3.181475 GCCTTCTGATCCGACTGTTATCA 60.181 47.826 0.00 0.00 0.00 2.15
3321 9216 3.385577 GCCTTCTGATCCGACTGTTATC 58.614 50.000 0.00 0.00 0.00 1.75
3322 9217 2.103263 GGCCTTCTGATCCGACTGTTAT 59.897 50.000 0.00 0.00 0.00 1.89
3323 9218 1.480954 GGCCTTCTGATCCGACTGTTA 59.519 52.381 0.00 0.00 0.00 2.41
3324 9219 0.250513 GGCCTTCTGATCCGACTGTT 59.749 55.000 0.00 0.00 0.00 3.16
3325 9220 0.904865 TGGCCTTCTGATCCGACTGT 60.905 55.000 3.32 0.00 0.00 3.55
3326 9221 0.460987 GTGGCCTTCTGATCCGACTG 60.461 60.000 3.32 0.00 0.00 3.51
3327 9222 0.616111 AGTGGCCTTCTGATCCGACT 60.616 55.000 3.32 0.00 0.00 4.18
3328 9223 0.250513 AAGTGGCCTTCTGATCCGAC 59.749 55.000 3.32 0.00 0.00 4.79
3329 9224 0.250234 CAAGTGGCCTTCTGATCCGA 59.750 55.000 3.32 0.00 0.00 4.55
3330 9225 0.036010 ACAAGTGGCCTTCTGATCCG 60.036 55.000 3.32 0.00 0.00 4.18
3331 9226 1.003580 TCACAAGTGGCCTTCTGATCC 59.996 52.381 3.32 0.00 0.00 3.36
3332 9227 2.479566 TCACAAGTGGCCTTCTGATC 57.520 50.000 3.32 0.00 0.00 2.92
3333 9228 3.446442 AATCACAAGTGGCCTTCTGAT 57.554 42.857 3.32 0.00 37.77 2.90
3334 9229 2.957402 AATCACAAGTGGCCTTCTGA 57.043 45.000 3.32 0.00 31.39 3.27
3335 9230 4.321230 GGTTTAATCACAAGTGGCCTTCTG 60.321 45.833 3.32 0.00 0.00 3.02
3336 9231 3.826729 GGTTTAATCACAAGTGGCCTTCT 59.173 43.478 3.32 0.00 0.00 2.85
3337 9232 3.572255 TGGTTTAATCACAAGTGGCCTTC 59.428 43.478 3.32 0.00 0.00 3.46
3338 9233 3.571590 TGGTTTAATCACAAGTGGCCTT 58.428 40.909 3.32 0.00 0.00 4.35
3339 9234 3.237268 TGGTTTAATCACAAGTGGCCT 57.763 42.857 3.32 0.00 0.00 5.19
3340 9235 4.705023 AGTATGGTTTAATCACAAGTGGCC 59.295 41.667 0.00 0.00 0.00 5.36
3341 9236 5.897377 AGTATGGTTTAATCACAAGTGGC 57.103 39.130 0.00 0.00 0.00 5.01
3346 9241 8.973182 GGGGAATTTAGTATGGTTTAATCACAA 58.027 33.333 0.00 0.00 0.00 3.33
3347 9242 8.116669 TGGGGAATTTAGTATGGTTTAATCACA 58.883 33.333 0.00 0.00 0.00 3.58
3348 9243 8.410912 GTGGGGAATTTAGTATGGTTTAATCAC 58.589 37.037 0.00 0.00 0.00 3.06
3349 9244 8.340757 AGTGGGGAATTTAGTATGGTTTAATCA 58.659 33.333 0.00 0.00 0.00 2.57
3350 9245 8.762481 AGTGGGGAATTTAGTATGGTTTAATC 57.238 34.615 0.00 0.00 0.00 1.75
3351 9246 9.555411 AAAGTGGGGAATTTAGTATGGTTTAAT 57.445 29.630 0.00 0.00 0.00 1.40
3352 9247 8.959676 AAAGTGGGGAATTTAGTATGGTTTAA 57.040 30.769 0.00 0.00 0.00 1.52
3353 9248 7.616542 GGAAAGTGGGGAATTTAGTATGGTTTA 59.383 37.037 0.00 0.00 0.00 2.01
3354 9249 6.439375 GGAAAGTGGGGAATTTAGTATGGTTT 59.561 38.462 0.00 0.00 0.00 3.27
3355 9250 5.955959 GGAAAGTGGGGAATTTAGTATGGTT 59.044 40.000 0.00 0.00 0.00 3.67
3356 9251 5.015817 TGGAAAGTGGGGAATTTAGTATGGT 59.984 40.000 0.00 0.00 0.00 3.55
3357 9252 5.515106 TGGAAAGTGGGGAATTTAGTATGG 58.485 41.667 0.00 0.00 0.00 2.74
3358 9253 7.320399 GTTTGGAAAGTGGGGAATTTAGTATG 58.680 38.462 0.00 0.00 0.00 2.39
3359 9254 6.439375 GGTTTGGAAAGTGGGGAATTTAGTAT 59.561 38.462 0.00 0.00 0.00 2.12
3360 9255 5.776208 GGTTTGGAAAGTGGGGAATTTAGTA 59.224 40.000 0.00 0.00 0.00 1.82
3361 9256 4.591498 GGTTTGGAAAGTGGGGAATTTAGT 59.409 41.667 0.00 0.00 0.00 2.24
3362 9257 4.591072 TGGTTTGGAAAGTGGGGAATTTAG 59.409 41.667 0.00 0.00 0.00 1.85
3363 9258 4.557705 TGGTTTGGAAAGTGGGGAATTTA 58.442 39.130 0.00 0.00 0.00 1.40
3364 9259 3.388913 TGGTTTGGAAAGTGGGGAATTT 58.611 40.909 0.00 0.00 0.00 1.82
3365 9260 3.053359 TGGTTTGGAAAGTGGGGAATT 57.947 42.857 0.00 0.00 0.00 2.17
3366 9261 2.785357 TGGTTTGGAAAGTGGGGAAT 57.215 45.000 0.00 0.00 0.00 3.01
3367 9262 2.785357 ATGGTTTGGAAAGTGGGGAA 57.215 45.000 0.00 0.00 0.00 3.97
3368 9263 2.785357 AATGGTTTGGAAAGTGGGGA 57.215 45.000 0.00 0.00 0.00 4.81
3369 9264 4.093011 TGATAATGGTTTGGAAAGTGGGG 58.907 43.478 0.00 0.00 0.00 4.96
3370 9265 5.736951 TTGATAATGGTTTGGAAAGTGGG 57.263 39.130 0.00 0.00 0.00 4.61
3371 9266 6.758254 ACTTTGATAATGGTTTGGAAAGTGG 58.242 36.000 0.00 0.00 32.41 4.00
3372 9267 9.757227 TTTACTTTGATAATGGTTTGGAAAGTG 57.243 29.630 0.00 0.00 34.76 3.16
3373 9268 9.758651 GTTTACTTTGATAATGGTTTGGAAAGT 57.241 29.630 0.00 0.00 36.44 2.66
3374 9269 9.203421 GGTTTACTTTGATAATGGTTTGGAAAG 57.797 33.333 0.00 0.00 0.00 2.62
3375 9270 8.705594 TGGTTTACTTTGATAATGGTTTGGAAA 58.294 29.630 0.00 0.00 0.00 3.13
3376 9271 8.251383 TGGTTTACTTTGATAATGGTTTGGAA 57.749 30.769 0.00 0.00 0.00 3.53
3377 9272 7.524698 GCTGGTTTACTTTGATAATGGTTTGGA 60.525 37.037 0.00 0.00 0.00 3.53
3378 9273 6.589907 GCTGGTTTACTTTGATAATGGTTTGG 59.410 38.462 0.00 0.00 0.00 3.28
3379 9274 7.151308 TGCTGGTTTACTTTGATAATGGTTTG 58.849 34.615 0.00 0.00 0.00 2.93
3380 9275 7.296628 TGCTGGTTTACTTTGATAATGGTTT 57.703 32.000 0.00 0.00 0.00 3.27
3381 9276 6.909550 TGCTGGTTTACTTTGATAATGGTT 57.090 33.333 0.00 0.00 0.00 3.67
3382 9277 6.266558 TGTTGCTGGTTTACTTTGATAATGGT 59.733 34.615 0.00 0.00 0.00 3.55
3383 9278 6.686630 TGTTGCTGGTTTACTTTGATAATGG 58.313 36.000 0.00 0.00 0.00 3.16
3389 9284 8.465999 CCATAATATGTTGCTGGTTTACTTTGA 58.534 33.333 0.00 0.00 0.00 2.69
3390 9285 8.250332 ACCATAATATGTTGCTGGTTTACTTTG 58.750 33.333 5.72 0.00 36.86 2.77
3391 9286 8.361169 ACCATAATATGTTGCTGGTTTACTTT 57.639 30.769 5.72 0.00 36.86 2.66
3401 9296 9.338622 GTCCTACTTTTACCATAATATGTTGCT 57.661 33.333 0.00 0.00 0.00 3.91
3416 9311 6.833041 TCACTGACAAATGGTCCTACTTTTA 58.167 36.000 0.00 0.00 46.38 1.52
3482 9377 3.805823 GCATTTTGCGTACTCTCGAAAA 58.194 40.909 0.00 0.00 36.69 2.29
3483 9378 3.449322 GCATTTTGCGTACTCTCGAAA 57.551 42.857 0.00 0.00 31.71 3.46
3495 9390 3.487563 AAGCTAAGGTACGCATTTTGC 57.512 42.857 0.00 0.00 40.69 3.68
3496 9391 8.062448 GTCTATAAAGCTAAGGTACGCATTTTG 58.938 37.037 0.00 0.00 0.00 2.44
3497 9392 7.042925 CGTCTATAAAGCTAAGGTACGCATTTT 60.043 37.037 0.00 0.00 0.00 1.82
3498 9393 6.420008 CGTCTATAAAGCTAAGGTACGCATTT 59.580 38.462 0.00 0.00 0.00 2.32
3499 9394 5.919141 CGTCTATAAAGCTAAGGTACGCATT 59.081 40.000 0.00 0.00 0.00 3.56
3500 9395 5.240183 TCGTCTATAAAGCTAAGGTACGCAT 59.760 40.000 0.00 0.00 0.00 4.73
3501 9396 4.576053 TCGTCTATAAAGCTAAGGTACGCA 59.424 41.667 0.00 0.00 0.00 5.24
3502 9397 5.100751 TCGTCTATAAAGCTAAGGTACGC 57.899 43.478 0.00 0.00 0.00 4.42
3503 9398 7.412853 TCTTTCGTCTATAAAGCTAAGGTACG 58.587 38.462 0.00 0.00 34.58 3.67
3504 9399 8.619546 TCTCTTTCGTCTATAAAGCTAAGGTAC 58.380 37.037 0.00 0.00 34.58 3.34
3505 9400 8.743085 TCTCTTTCGTCTATAAAGCTAAGGTA 57.257 34.615 0.00 0.00 34.58 3.08
3506 9401 7.642082 TCTCTTTCGTCTATAAAGCTAAGGT 57.358 36.000 0.00 0.00 34.58 3.50
3507 9402 6.639279 GCTCTCTTTCGTCTATAAAGCTAAGG 59.361 42.308 0.00 0.00 34.58 2.69
3508 9403 7.422399 AGCTCTCTTTCGTCTATAAAGCTAAG 58.578 38.462 0.00 0.00 34.58 2.18
3509 9404 7.336161 AGCTCTCTTTCGTCTATAAAGCTAA 57.664 36.000 0.00 0.00 34.58 3.09
3510 9405 6.945938 AGCTCTCTTTCGTCTATAAAGCTA 57.054 37.500 0.00 0.00 34.58 3.32
3511 9406 5.845391 AGCTCTCTTTCGTCTATAAAGCT 57.155 39.130 0.00 0.00 34.58 3.74
3512 9407 7.142680 ACATAGCTCTCTTTCGTCTATAAAGC 58.857 38.462 0.00 0.00 34.58 3.51
3513 9408 9.601971 GTACATAGCTCTCTTTCGTCTATAAAG 57.398 37.037 0.00 0.00 35.66 1.85
3514 9409 9.117183 TGTACATAGCTCTCTTTCGTCTATAAA 57.883 33.333 0.00 0.00 0.00 1.40
3515 9410 8.672823 TGTACATAGCTCTCTTTCGTCTATAA 57.327 34.615 0.00 0.00 0.00 0.98
3516 9411 8.672823 TTGTACATAGCTCTCTTTCGTCTATA 57.327 34.615 0.00 0.00 0.00 1.31
3517 9412 7.499563 TCTTGTACATAGCTCTCTTTCGTCTAT 59.500 37.037 0.00 0.00 0.00 1.98
3518 9413 6.822170 TCTTGTACATAGCTCTCTTTCGTCTA 59.178 38.462 0.00 0.00 0.00 2.59
3519 9414 5.648526 TCTTGTACATAGCTCTCTTTCGTCT 59.351 40.000 0.00 0.00 0.00 4.18
3520 9415 5.881447 TCTTGTACATAGCTCTCTTTCGTC 58.119 41.667 0.00 0.00 0.00 4.20
3521 9416 5.899120 TCTTGTACATAGCTCTCTTTCGT 57.101 39.130 0.00 0.00 0.00 3.85
3522 9417 7.763172 ATTTCTTGTACATAGCTCTCTTTCG 57.237 36.000 0.00 0.00 0.00 3.46
3523 9418 9.587772 TGTATTTCTTGTACATAGCTCTCTTTC 57.412 33.333 0.00 0.00 0.00 2.62
3524 9419 9.593134 CTGTATTTCTTGTACATAGCTCTCTTT 57.407 33.333 0.00 0.00 32.13 2.52
3525 9420 8.972127 TCTGTATTTCTTGTACATAGCTCTCTT 58.028 33.333 0.00 0.00 32.13 2.85
3526 9421 8.410141 GTCTGTATTTCTTGTACATAGCTCTCT 58.590 37.037 0.00 0.00 32.13 3.10
3527 9422 8.568732 GTCTGTATTTCTTGTACATAGCTCTC 57.431 38.462 0.00 0.00 32.13 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.