Multiple sequence alignment - TraesCS1D01G007300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G007300 chr1D 100.000 3253 0 0 1 3253 3613599 3616851 0.000000e+00 6008.0
1 TraesCS1D01G007300 chr1D 81.498 1843 245 53 474 2265 3227500 3229297 0.000000e+00 1426.0
2 TraesCS1D01G007300 chr1D 87.407 945 84 15 759 1686 3122848 3123774 0.000000e+00 1053.0
3 TraesCS1D01G007300 chr1D 85.833 840 97 10 1696 2529 3123817 3124640 0.000000e+00 872.0
4 TraesCS1D01G007300 chr1D 80.894 738 83 32 42 731 3122122 3122849 2.220000e-146 529.0
5 TraesCS1D01G007300 chr1D 90.132 152 15 0 2909 3060 3124977 3125128 7.120000e-47 198.0
6 TraesCS1D01G007300 chr1B 89.281 1670 107 34 42 1689 7929203 7927584 0.000000e+00 2026.0
7 TraesCS1D01G007300 chr1B 91.034 1450 93 21 250 1689 7130853 7129431 0.000000e+00 1923.0
8 TraesCS1D01G007300 chr1B 92.370 1363 76 15 308 1663 6325802 6327143 0.000000e+00 1916.0
9 TraesCS1D01G007300 chr1B 88.383 835 75 6 1696 2530 6327206 6328018 0.000000e+00 985.0
10 TraesCS1D01G007300 chr1B 88.383 835 75 6 1696 2530 7927541 7926729 0.000000e+00 985.0
11 TraesCS1D01G007300 chr1B 87.904 835 79 6 1696 2530 7129389 7128577 0.000000e+00 963.0
12 TraesCS1D01G007300 chr1B 82.828 792 109 20 899 1684 6340599 6341369 0.000000e+00 684.0
13 TraesCS1D01G007300 chr1B 82.680 791 112 19 899 1684 6693307 6692537 0.000000e+00 678.0
14 TraesCS1D01G007300 chr1B 82.250 800 110 23 899 1688 629702643 629703420 0.000000e+00 662.0
15 TraesCS1D01G007300 chr1B 82.176 432 60 8 2012 2441 6341771 6342187 3.990000e-94 355.0
16 TraesCS1D01G007300 chr1B 82.915 398 51 8 2012 2407 6692133 6691751 3.110000e-90 342.0
17 TraesCS1D01G007300 chr1B 81.293 433 64 7 2012 2441 629703828 629704246 5.200000e-88 335.0
18 TraesCS1D01G007300 chr1B 84.536 291 38 5 1697 1982 629703468 629703756 6.870000e-72 281.0
19 TraesCS1D01G007300 chr1B 84.937 239 30 6 2560 2795 6328010 6328245 1.510000e-58 237.0
20 TraesCS1D01G007300 chr1B 84.937 239 30 6 2560 2795 7128585 7128350 1.510000e-58 237.0
21 TraesCS1D01G007300 chr1B 84.937 239 30 6 2560 2795 7926737 7926502 1.510000e-58 237.0
22 TraesCS1D01G007300 chr1B 80.690 145 11 4 42 185 7132128 7132000 2.670000e-16 97.1
23 TraesCS1D01G007300 chr1B 80.282 142 10 4 42 181 6325677 6325802 1.240000e-14 91.6
24 TraesCS1D01G007300 chr1B 97.500 40 1 0 1 40 6325601 6325640 5.820000e-08 69.4
25 TraesCS1D01G007300 chrUn 91.304 1081 72 11 384 1452 9821155 9820085 0.000000e+00 1456.0
26 TraesCS1D01G007300 chrUn 91.802 988 60 10 1393 2377 9820074 9819105 0.000000e+00 1356.0
27 TraesCS1D01G007300 chr1A 86.924 543 58 11 1154 1688 6499002 6498465 6.010000e-167 597.0
28 TraesCS1D01G007300 chr1A 81.636 648 80 28 899 1539 6439196 6438581 4.850000e-138 501.0
29 TraesCS1D01G007300 chr1A 85.538 325 33 11 783 1099 6500315 6499997 8.700000e-86 327.0
30 TraesCS1D01G007300 chr1A 84.906 106 13 2 672 777 6440306 6440204 1.600000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G007300 chr1D 3613599 3616851 3252 False 6008.000000 6008 100.000000 1 3253 1 chr1D.!!$F2 3252
1 TraesCS1D01G007300 chr1D 3227500 3229297 1797 False 1426.000000 1426 81.498000 474 2265 1 chr1D.!!$F1 1791
2 TraesCS1D01G007300 chr1D 3122122 3125128 3006 False 663.000000 1053 86.066500 42 3060 4 chr1D.!!$F3 3018
3 TraesCS1D01G007300 chr1B 7926502 7929203 2701 True 1082.666667 2026 87.533667 42 2795 3 chr1B.!!$R3 2753
4 TraesCS1D01G007300 chr1B 7128350 7132128 3778 True 805.025000 1923 86.141250 42 2795 4 chr1B.!!$R2 2753
5 TraesCS1D01G007300 chr1B 6325601 6328245 2644 False 659.800000 1916 88.694400 1 2795 5 chr1B.!!$F1 2794
6 TraesCS1D01G007300 chr1B 6340599 6342187 1588 False 519.500000 684 82.502000 899 2441 2 chr1B.!!$F2 1542
7 TraesCS1D01G007300 chr1B 6691751 6693307 1556 True 510.000000 678 82.797500 899 2407 2 chr1B.!!$R1 1508
8 TraesCS1D01G007300 chr1B 629702643 629704246 1603 False 426.000000 662 82.693000 899 2441 3 chr1B.!!$F3 1542
9 TraesCS1D01G007300 chrUn 9819105 9821155 2050 True 1406.000000 1456 91.553000 384 2377 2 chrUn.!!$R1 1993
10 TraesCS1D01G007300 chr1A 6498465 6500315 1850 True 462.000000 597 86.231000 783 1688 2 chr1A.!!$R2 905
11 TraesCS1D01G007300 chr1A 6438581 6440306 1725 True 302.500000 501 83.271000 672 1539 2 chr1A.!!$R1 867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 1488 0.038251 TATGCCACCGATCGAGATGC 60.038 55.0 18.66 13.65 0.00 3.91 F
1432 4710 0.034380 GGTTTAAGGGGTCCAGCCTC 60.034 60.0 0.00 0.00 38.29 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 4882 0.251297 TCACCACTTTGGGGATGCAG 60.251 55.0 0.00 0.0 46.95 4.41 R
3144 6578 0.537143 TGCATTGCTTTCGAGGTGGT 60.537 50.0 10.49 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.683400 GCATAGACTTGCTGGCCTTAGTTA 60.683 45.833 3.32 0.00 39.57 2.24
57 93 3.190439 AGTTATGGCCTCCACCTAAAGT 58.810 45.455 3.32 0.00 35.80 2.66
64 100 1.561542 CCTCCACCTAAAGTCTGCCAT 59.438 52.381 0.00 0.00 0.00 4.40
93 133 2.916702 TTCTCTGCTTTGCTCTCACA 57.083 45.000 0.00 0.00 0.00 3.58
113 153 5.104402 TCACAGACATATGGATCATTGGTGT 60.104 40.000 7.80 0.00 0.00 4.16
118 158 8.294577 CAGACATATGGATCATTGGTGTAATTG 58.705 37.037 7.80 0.00 0.00 2.32
147 191 6.546972 GGCATAGCCTTAGTGATTACTTTC 57.453 41.667 0.00 0.00 46.69 2.62
181 1446 6.294065 CGTAGTAGGATTTCCGAATTCTAGCT 60.294 42.308 3.52 0.00 42.08 3.32
182 1447 5.848406 AGTAGGATTTCCGAATTCTAGCTG 58.152 41.667 3.52 0.00 42.08 4.24
183 1448 3.471680 AGGATTTCCGAATTCTAGCTGC 58.528 45.455 3.52 0.00 42.08 5.25
184 1449 2.221981 GGATTTCCGAATTCTAGCTGCG 59.778 50.000 3.52 0.00 0.00 5.18
185 1450 1.006832 TTTCCGAATTCTAGCTGCGC 58.993 50.000 0.00 0.00 0.00 6.09
186 1451 0.810031 TTCCGAATTCTAGCTGCGCC 60.810 55.000 4.18 0.00 0.00 6.53
187 1452 1.227380 CCGAATTCTAGCTGCGCCT 60.227 57.895 4.18 0.00 0.00 5.52
188 1453 1.493950 CCGAATTCTAGCTGCGCCTG 61.494 60.000 4.18 0.00 0.00 4.85
189 1454 1.645997 GAATTCTAGCTGCGCCTGC 59.354 57.895 4.18 9.99 43.20 4.85
199 1464 4.533566 GCGCCTGCAAACTGTAAC 57.466 55.556 0.00 0.00 42.15 2.50
200 1465 1.949257 GCGCCTGCAAACTGTAACT 59.051 52.632 0.00 0.00 42.15 2.24
201 1466 0.385974 GCGCCTGCAAACTGTAACTG 60.386 55.000 0.00 0.00 42.15 3.16
202 1467 1.225855 CGCCTGCAAACTGTAACTGA 58.774 50.000 0.00 0.00 0.00 3.41
203 1468 1.806542 CGCCTGCAAACTGTAACTGAT 59.193 47.619 0.00 0.00 0.00 2.90
204 1469 2.226437 CGCCTGCAAACTGTAACTGATT 59.774 45.455 0.00 0.00 0.00 2.57
205 1470 3.435327 CGCCTGCAAACTGTAACTGATTA 59.565 43.478 0.00 0.00 0.00 1.75
206 1471 4.094887 CGCCTGCAAACTGTAACTGATTAT 59.905 41.667 0.00 0.00 0.00 1.28
207 1472 5.335127 GCCTGCAAACTGTAACTGATTATG 58.665 41.667 0.00 0.00 0.00 1.90
208 1473 5.335127 CCTGCAAACTGTAACTGATTATGC 58.665 41.667 0.00 0.00 0.00 3.14
209 1474 5.309323 TGCAAACTGTAACTGATTATGCC 57.691 39.130 0.00 0.00 0.00 4.40
210 1475 4.764308 TGCAAACTGTAACTGATTATGCCA 59.236 37.500 0.00 0.00 0.00 4.92
211 1476 5.095490 GCAAACTGTAACTGATTATGCCAC 58.905 41.667 0.00 0.00 0.00 5.01
212 1477 5.640732 CAAACTGTAACTGATTATGCCACC 58.359 41.667 0.00 0.00 0.00 4.61
213 1478 3.531538 ACTGTAACTGATTATGCCACCG 58.468 45.455 0.00 0.00 0.00 4.94
214 1479 3.196901 ACTGTAACTGATTATGCCACCGA 59.803 43.478 0.00 0.00 0.00 4.69
215 1480 4.141711 ACTGTAACTGATTATGCCACCGAT 60.142 41.667 0.00 0.00 0.00 4.18
216 1481 4.377021 TGTAACTGATTATGCCACCGATC 58.623 43.478 0.00 0.00 0.00 3.69
217 1482 2.154854 ACTGATTATGCCACCGATCG 57.845 50.000 8.51 8.51 0.00 3.69
218 1483 1.686587 ACTGATTATGCCACCGATCGA 59.313 47.619 18.66 0.00 0.00 3.59
219 1484 2.288457 ACTGATTATGCCACCGATCGAG 60.288 50.000 18.66 9.42 0.00 4.04
220 1485 1.960689 TGATTATGCCACCGATCGAGA 59.039 47.619 18.66 0.00 0.00 4.04
221 1486 2.562738 TGATTATGCCACCGATCGAGAT 59.437 45.455 18.66 0.00 0.00 2.75
222 1487 2.438868 TTATGCCACCGATCGAGATG 57.561 50.000 18.66 11.58 0.00 2.90
223 1488 0.038251 TATGCCACCGATCGAGATGC 60.038 55.000 18.66 13.65 0.00 3.91
224 1489 1.752358 ATGCCACCGATCGAGATGCT 61.752 55.000 18.66 1.61 0.00 3.79
225 1490 1.953138 GCCACCGATCGAGATGCTG 60.953 63.158 18.66 0.00 0.00 4.41
226 1491 1.735973 CCACCGATCGAGATGCTGA 59.264 57.895 18.66 0.00 0.00 4.26
227 1492 0.318529 CCACCGATCGAGATGCTGAG 60.319 60.000 18.66 0.00 0.00 3.35
228 1493 0.383590 CACCGATCGAGATGCTGAGT 59.616 55.000 18.66 0.00 0.00 3.41
229 1494 1.604278 CACCGATCGAGATGCTGAGTA 59.396 52.381 18.66 0.00 0.00 2.59
230 1495 2.033424 CACCGATCGAGATGCTGAGTAA 59.967 50.000 18.66 0.00 0.00 2.24
231 1496 2.887783 ACCGATCGAGATGCTGAGTAAT 59.112 45.455 18.66 0.00 0.00 1.89
232 1497 3.319405 ACCGATCGAGATGCTGAGTAATT 59.681 43.478 18.66 0.00 0.00 1.40
233 1498 4.202161 ACCGATCGAGATGCTGAGTAATTT 60.202 41.667 18.66 0.00 0.00 1.82
234 1499 4.149571 CCGATCGAGATGCTGAGTAATTTG 59.850 45.833 18.66 0.00 0.00 2.32
235 1500 4.742167 CGATCGAGATGCTGAGTAATTTGT 59.258 41.667 10.26 0.00 0.00 2.83
236 1501 5.332130 CGATCGAGATGCTGAGTAATTTGTG 60.332 44.000 10.26 0.00 0.00 3.33
237 1502 4.183865 TCGAGATGCTGAGTAATTTGTGG 58.816 43.478 0.00 0.00 0.00 4.17
238 1503 3.242543 CGAGATGCTGAGTAATTTGTGGC 60.243 47.826 0.00 0.00 0.00 5.01
239 1504 3.689347 AGATGCTGAGTAATTTGTGGCA 58.311 40.909 0.00 0.00 0.00 4.92
240 1505 3.693085 AGATGCTGAGTAATTTGTGGCAG 59.307 43.478 0.00 0.00 0.00 4.85
241 1506 2.161855 TGCTGAGTAATTTGTGGCAGG 58.838 47.619 0.00 0.00 0.00 4.85
242 1507 1.474077 GCTGAGTAATTTGTGGCAGGG 59.526 52.381 0.00 0.00 0.00 4.45
243 1508 2.795329 CTGAGTAATTTGTGGCAGGGT 58.205 47.619 0.00 0.00 0.00 4.34
244 1509 2.489329 CTGAGTAATTTGTGGCAGGGTG 59.511 50.000 0.00 0.00 0.00 4.61
245 1510 1.818674 GAGTAATTTGTGGCAGGGTGG 59.181 52.381 0.00 0.00 0.00 4.61
246 1511 1.427368 AGTAATTTGTGGCAGGGTGGA 59.573 47.619 0.00 0.00 0.00 4.02
247 1512 2.042979 AGTAATTTGTGGCAGGGTGGAT 59.957 45.455 0.00 0.00 0.00 3.41
248 1513 1.560505 AATTTGTGGCAGGGTGGATC 58.439 50.000 0.00 0.00 0.00 3.36
249 1514 0.409092 ATTTGTGGCAGGGTGGATCA 59.591 50.000 0.00 0.00 0.00 2.92
250 1515 0.251297 TTTGTGGCAGGGTGGATCAG 60.251 55.000 0.00 0.00 0.00 2.90
251 1516 2.439156 GTGGCAGGGTGGATCAGC 60.439 66.667 0.00 0.00 0.00 4.26
275 1540 4.675161 TGGCTGCCGGGATGCAAA 62.675 61.111 14.98 4.45 41.51 3.68
276 1541 3.381136 GGCTGCCGGGATGCAAAA 61.381 61.111 16.58 0.00 41.51 2.44
277 1542 2.656055 GCTGCCGGGATGCAAAAA 59.344 55.556 2.18 0.00 41.51 1.94
314 1579 1.072266 TGCCAGTCCCCACAAATAGT 58.928 50.000 0.00 0.00 0.00 2.12
337 1602 8.932945 AGTGATTGTACATAGTAGACACAATG 57.067 34.615 0.00 0.00 39.31 2.82
342 1607 4.826274 ACATAGTAGACACAATGGCTGT 57.174 40.909 0.00 0.00 35.73 4.40
343 1608 5.165961 ACATAGTAGACACAATGGCTGTT 57.834 39.130 0.00 0.00 35.73 3.16
373 1663 9.672673 AAAAATCAGTAGACATTACAGCTGTAT 57.327 29.630 26.54 12.73 0.00 2.29
374 1664 8.654230 AAATCAGTAGACATTACAGCTGTATG 57.346 34.615 26.54 24.60 0.00 2.39
378 1668 7.556635 TCAGTAGACATTACAGCTGTATGTAGT 59.443 37.037 26.54 20.42 37.01 2.73
482 1798 4.874966 AGATTCAGCACTGACAATTCTAGC 59.125 41.667 0.00 0.00 39.66 3.42
503 1819 1.486310 ACTGGCTATTCGATGCTGGAA 59.514 47.619 5.74 0.00 0.00 3.53
504 1820 2.105477 ACTGGCTATTCGATGCTGGAAT 59.895 45.455 5.74 3.61 37.79 3.01
510 1826 0.327924 TTCGATGCTGGAATGGGTGT 59.672 50.000 0.00 0.00 0.00 4.16
557 1875 1.961394 GGTGTAGTGGCATCCGAGATA 59.039 52.381 0.00 0.00 0.00 1.98
561 1883 4.017126 TGTAGTGGCATCCGAGATATAGG 58.983 47.826 0.00 0.00 0.00 2.57
666 1990 1.754803 TGACAAATCGACGCCCTAGAT 59.245 47.619 0.00 0.00 0.00 1.98
667 1991 2.953648 TGACAAATCGACGCCCTAGATA 59.046 45.455 0.00 0.00 0.00 1.98
668 1992 3.572682 TGACAAATCGACGCCCTAGATAT 59.427 43.478 0.00 0.00 0.00 1.63
669 1993 4.763279 TGACAAATCGACGCCCTAGATATA 59.237 41.667 0.00 0.00 0.00 0.86
706 2032 8.561738 AGTACCAAACCTACAATATGACAAAG 57.438 34.615 0.00 0.00 0.00 2.77
786 2151 1.977129 AGCTCATATCTGAAGCTCCCC 59.023 52.381 0.00 0.00 33.42 4.81
821 2192 5.978814 TCAATTAGGAGGTCTTAGCTGTTC 58.021 41.667 0.00 0.00 0.00 3.18
822 2193 5.483937 TCAATTAGGAGGTCTTAGCTGTTCA 59.516 40.000 0.00 0.00 0.00 3.18
830 2201 3.077359 GTCTTAGCTGTTCATTGGCTGT 58.923 45.455 0.00 0.00 37.50 4.40
872 2251 4.143543 CTGGATCTGACTCAGCATCTAGA 58.856 47.826 17.56 0.00 33.37 2.43
944 3201 3.159213 TCATTTCCTCACCAAGCACAT 57.841 42.857 0.00 0.00 0.00 3.21
945 3202 3.499338 TCATTTCCTCACCAAGCACATT 58.501 40.909 0.00 0.00 0.00 2.71
946 3203 3.256383 TCATTTCCTCACCAAGCACATTG 59.744 43.478 0.00 0.00 38.74 2.82
947 3204 2.655090 TTCCTCACCAAGCACATTGA 57.345 45.000 0.00 0.00 41.83 2.57
948 3205 2.885135 TCCTCACCAAGCACATTGAT 57.115 45.000 0.00 0.00 41.83 2.57
973 3230 4.324267 GAAACCCAGTTAGCTTGCTTAGA 58.676 43.478 0.00 0.00 0.00 2.10
1364 4570 5.521735 AGCGTCTCAATTAATTAGACTGCAG 59.478 40.000 27.04 13.48 39.73 4.41
1432 4710 0.034380 GGTTTAAGGGGTCCAGCCTC 60.034 60.000 0.00 0.00 38.29 4.70
1507 4795 2.615912 GAGTGGAGAGTTTGCATATGCC 59.384 50.000 24.54 9.67 41.18 4.40
1594 4882 4.098055 TCGTATCAGTGCTTTCTGTCTC 57.902 45.455 0.00 0.00 36.85 3.36
1619 4907 1.553248 TCCCCAAAGTGGTGAGATACG 59.447 52.381 0.00 0.00 35.17 3.06
1643 4931 8.588472 ACGTTTACCACTAACTATTTTCCTACT 58.412 33.333 0.00 0.00 0.00 2.57
1821 5158 6.305272 ACTGTGACAATTAGATGTGGAGAT 57.695 37.500 0.00 0.00 32.57 2.75
1830 5167 9.857656 ACAATTAGATGTGGAGATGTGATTAAT 57.142 29.630 0.00 0.00 30.82 1.40
1836 5173 8.708378 AGATGTGGAGATGTGATTAATTCAGTA 58.292 33.333 0.00 0.00 34.17 2.74
1931 5273 4.214545 TGCGACGGTGAGTTATTTTTGATT 59.785 37.500 0.00 0.00 0.00 2.57
1962 5307 8.682710 ACTTTAGTTTCTACATTGTTTTCTGCA 58.317 29.630 0.00 0.00 0.00 4.41
2007 5401 2.093973 CACACCTGTACATCCTCTCCAC 60.094 54.545 0.00 0.00 0.00 4.02
2211 5610 0.541392 ATTCTATGCACGTGCTGGGA 59.459 50.000 37.59 27.56 42.66 4.37
2289 5688 9.899226 GTGTTAACTTGCATAAGAATCTTCTTT 57.101 29.630 10.24 0.00 44.70 2.52
2305 5705 2.536997 CTTTCCCCGGTCGATGCCTT 62.537 60.000 0.00 0.00 0.00 4.35
2344 5744 6.197842 GCATTGCAACAGTTAATAAGCAGATC 59.802 38.462 0.00 0.00 33.14 2.75
2352 5752 5.176590 CAGTTAATAAGCAGATCGAGAAGGC 59.823 44.000 0.00 0.00 0.00 4.35
2377 5777 2.165641 TCCTTGTCGCGATCTTGTGTAT 59.834 45.455 14.06 0.00 0.00 2.29
2378 5778 3.379057 TCCTTGTCGCGATCTTGTGTATA 59.621 43.478 14.06 0.00 0.00 1.47
2383 5783 5.449304 TGTCGCGATCTTGTGTATACTATG 58.551 41.667 14.06 0.00 0.00 2.23
2385 5785 5.339875 GTCGCGATCTTGTGTATACTATGTG 59.660 44.000 14.06 0.00 0.00 3.21
2441 5841 6.425114 ACTGTCTACATGTACTTGCTTGAAAG 59.575 38.462 0.08 3.34 0.00 2.62
2443 5843 7.438564 TGTCTACATGTACTTGCTTGAAAGTA 58.561 34.615 0.08 0.00 40.77 2.24
2467 5867 9.953825 GTAAAACGATGTACTAAGAACTTGATG 57.046 33.333 0.00 0.00 0.00 3.07
2468 5868 8.827177 AAAACGATGTACTAAGAACTTGATGA 57.173 30.769 0.00 0.00 0.00 2.92
2475 5875 7.378966 TGTACTAAGAACTTGATGAGACTTGG 58.621 38.462 0.00 0.00 33.81 3.61
2531 5931 5.141182 TGTTTTGTGTACCTCTCTCTCTCT 58.859 41.667 0.00 0.00 0.00 3.10
2533 5933 4.919774 TTGTGTACCTCTCTCTCTCTCT 57.080 45.455 0.00 0.00 0.00 3.10
2535 5935 4.101114 TGTGTACCTCTCTCTCTCTCTCT 58.899 47.826 0.00 0.00 0.00 3.10
2536 5936 4.161565 TGTGTACCTCTCTCTCTCTCTCTC 59.838 50.000 0.00 0.00 0.00 3.20
2537 5937 4.406003 GTGTACCTCTCTCTCTCTCTCTCT 59.594 50.000 0.00 0.00 0.00 3.10
2538 5938 4.649674 TGTACCTCTCTCTCTCTCTCTCTC 59.350 50.000 0.00 0.00 0.00 3.20
2539 5939 4.000928 ACCTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
2540 5940 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
2541 5941 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
2542 5942 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
2543 5943 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2544 5944 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2545 5945 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2546 5946 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2547 5947 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2548 5948 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2549 5949 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2550 5950 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2551 5951 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2552 5952 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2553 5953 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2554 5954 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2555 5955 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2556 5956 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2557 5957 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2558 5958 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2559 5959 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2560 5960 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2561 5961 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2562 5962 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2563 5963 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2564 5964 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2565 5965 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2566 5966 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2567 5967 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2568 5968 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2569 5969 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2570 5970 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2571 5971 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2574 5974 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2599 5999 2.140717 GTTGTTCCTACACGACAAGGG 58.859 52.381 0.00 0.00 34.29 3.95
2637 6039 9.703892 ATAGCTACAATTTTGCAACACAATTAA 57.296 25.926 0.00 0.00 38.31 1.40
2652 6054 9.757859 CAACACAATTAAATACATTGCAATTCC 57.242 29.630 9.83 0.00 35.36 3.01
2664 6066 4.707030 TTGCAATTCCTAGTTCTGCATG 57.293 40.909 0.00 0.00 42.22 4.06
2676 6078 7.981789 TCCTAGTTCTGCATGTATCAAGTAAAG 59.018 37.037 0.00 0.00 0.00 1.85
2680 6082 7.549488 AGTTCTGCATGTATCAAGTAAAGGTAC 59.451 37.037 0.00 0.00 0.00 3.34
2681 6083 6.040247 TCTGCATGTATCAAGTAAAGGTACG 58.960 40.000 0.00 0.00 35.20 3.67
2682 6084 4.569162 TGCATGTATCAAGTAAAGGTACGC 59.431 41.667 0.00 0.00 35.20 4.42
2687 6089 7.675962 TGTATCAAGTAAAGGTACGCAAATT 57.324 32.000 0.00 0.00 35.20 1.82
2773 6176 7.389053 AGGTCTTCAAATATGACAGAAACACTC 59.611 37.037 0.00 0.00 34.61 3.51
2775 6179 8.778358 GTCTTCAAATATGACAGAAACACTCTT 58.222 33.333 0.00 0.00 34.61 2.85
2776 6180 8.993121 TCTTCAAATATGACAGAAACACTCTTC 58.007 33.333 0.00 0.00 34.61 2.87
2777 6181 8.908786 TTCAAATATGACAGAAACACTCTTCT 57.091 30.769 0.00 0.00 36.02 2.85
2791 6195 4.080919 ACACTCTTCTATGCATTAGTGGCA 60.081 41.667 20.31 0.00 46.66 4.92
2795 6199 6.434028 ACTCTTCTATGCATTAGTGGCAAAAA 59.566 34.615 3.54 0.00 45.60 1.94
2796 6200 7.123247 ACTCTTCTATGCATTAGTGGCAAAAAT 59.877 33.333 3.54 0.00 45.60 1.82
2797 6201 8.518430 TCTTCTATGCATTAGTGGCAAAAATA 57.482 30.769 3.54 0.00 45.60 1.40
2798 6202 8.623903 TCTTCTATGCATTAGTGGCAAAAATAG 58.376 33.333 3.54 0.00 45.60 1.73
2801 6205 5.404466 TGCATTAGTGGCAAAAATAGCTT 57.596 34.783 0.00 0.00 38.54 3.74
2803 6207 6.929625 TGCATTAGTGGCAAAAATAGCTTAA 58.070 32.000 0.00 0.00 38.54 1.85
2806 6210 9.528018 GCATTAGTGGCAAAAATAGCTTAAATA 57.472 29.630 0.00 0.00 0.00 1.40
2846 6280 1.065854 AGGAGGCAAAGGACTTGATCG 60.066 52.381 0.00 0.00 37.17 3.69
2861 6295 6.587990 GGACTTGATCGTCAATATGGATACAG 59.412 42.308 3.59 0.00 43.07 2.74
2866 6300 7.768582 TTGATCGTCAATATGGATACAGTTGTT 59.231 33.333 5.91 0.00 40.33 2.83
2879 6313 9.733556 TGGATACAGTTGTTAGTTGTTAATCAT 57.266 29.630 0.00 0.00 46.17 2.45
2915 6349 4.453819 CCACCTTTCAAGTCATCTTCTGTC 59.546 45.833 0.00 0.00 0.00 3.51
2931 6365 6.516718 TCTTCTGTCAACTTGTTCTTCTAGG 58.483 40.000 0.00 0.00 0.00 3.02
2934 6368 4.957296 TGTCAACTTGTTCTTCTAGGTCC 58.043 43.478 0.00 0.00 0.00 4.46
2937 6371 5.011227 GTCAACTTGTTCTTCTAGGTCCTCT 59.989 44.000 0.00 0.00 0.00 3.69
2939 6373 6.434652 TCAACTTGTTCTTCTAGGTCCTCTAG 59.565 42.308 0.00 0.00 45.25 2.43
2956 6390 3.944015 CTCTAGAGCAAAAGGTTCATGGG 59.056 47.826 6.86 0.00 0.00 4.00
2959 6393 1.821136 GAGCAAAAGGTTCATGGGGAG 59.179 52.381 0.00 0.00 0.00 4.30
3021 6455 3.477210 CCATCTAGGTGAGCCTTAACC 57.523 52.381 3.99 0.00 44.18 2.85
3026 6460 1.911057 AGGTGAGCCTTAACCAAAGC 58.089 50.000 0.95 0.00 44.18 3.51
3027 6461 1.144913 AGGTGAGCCTTAACCAAAGCA 59.855 47.619 0.95 0.00 44.18 3.91
3031 6465 3.317993 GTGAGCCTTAACCAAAGCAAAGA 59.682 43.478 0.00 0.00 33.49 2.52
3045 6479 7.807907 ACCAAAGCAAAGAGTTCGTAATTAATG 59.192 33.333 0.00 0.00 0.00 1.90
3051 6485 6.920569 AAGAGTTCGTAATTAATGCCGAAT 57.079 33.333 19.30 11.84 40.85 3.34
3060 6494 8.788806 TCGTAATTAATGCCGAATATCCAAATT 58.211 29.630 7.12 0.00 0.00 1.82
3061 6495 9.061610 CGTAATTAATGCCGAATATCCAAATTC 57.938 33.333 1.80 0.00 33.37 2.17
3062 6496 9.353999 GTAATTAATGCCGAATATCCAAATTCC 57.646 33.333 0.00 0.00 33.15 3.01
3063 6497 7.781324 ATTAATGCCGAATATCCAAATTCCT 57.219 32.000 0.00 0.00 33.15 3.36
3064 6498 8.877864 ATTAATGCCGAATATCCAAATTCCTA 57.122 30.769 0.00 0.00 33.15 2.94
3065 6499 6.824305 AATGCCGAATATCCAAATTCCTAG 57.176 37.500 0.00 0.00 33.15 3.02
3066 6500 5.560722 TGCCGAATATCCAAATTCCTAGA 57.439 39.130 0.00 0.00 33.15 2.43
3067 6501 5.305585 TGCCGAATATCCAAATTCCTAGAC 58.694 41.667 0.00 0.00 33.15 2.59
3068 6502 5.071788 TGCCGAATATCCAAATTCCTAGACT 59.928 40.000 0.00 0.00 33.15 3.24
3069 6503 6.269077 TGCCGAATATCCAAATTCCTAGACTA 59.731 38.462 0.00 0.00 33.15 2.59
3070 6504 6.814146 GCCGAATATCCAAATTCCTAGACTAG 59.186 42.308 2.18 2.18 33.15 2.57
3071 6505 7.525692 GCCGAATATCCAAATTCCTAGACTAGT 60.526 40.741 8.68 0.00 33.15 2.57
3072 6506 8.030106 CCGAATATCCAAATTCCTAGACTAGTC 58.970 40.741 15.41 15.41 33.15 2.59
3073 6507 8.030106 CGAATATCCAAATTCCTAGACTAGTCC 58.970 40.741 19.38 1.81 33.15 3.85
3074 6508 5.793030 ATCCAAATTCCTAGACTAGTCCG 57.207 43.478 19.38 10.66 0.00 4.79
3075 6509 4.607239 TCCAAATTCCTAGACTAGTCCGT 58.393 43.478 19.38 4.54 0.00 4.69
3076 6510 4.401519 TCCAAATTCCTAGACTAGTCCGTG 59.598 45.833 19.38 9.46 0.00 4.94
3077 6511 4.401519 CCAAATTCCTAGACTAGTCCGTGA 59.598 45.833 19.38 10.12 0.00 4.35
3078 6512 5.450688 CCAAATTCCTAGACTAGTCCGTGAG 60.451 48.000 19.38 11.18 0.00 3.51
3079 6513 2.328819 TCCTAGACTAGTCCGTGAGC 57.671 55.000 19.38 0.00 0.00 4.26
3080 6514 0.938713 CCTAGACTAGTCCGTGAGCG 59.061 60.000 19.38 3.38 37.95 5.03
3091 6525 4.899239 GTGAGCGGAGGCGGGATG 62.899 72.222 0.00 0.00 46.35 3.51
3103 6537 4.802051 GGGATGCGCAGAAGGCCA 62.802 66.667 18.32 0.00 40.31 5.36
3104 6538 3.207669 GGATGCGCAGAAGGCCAG 61.208 66.667 18.32 0.00 40.31 4.85
3105 6539 3.207669 GATGCGCAGAAGGCCAGG 61.208 66.667 18.32 0.00 40.31 4.45
3106 6540 4.809496 ATGCGCAGAAGGCCAGGG 62.809 66.667 18.32 0.93 40.31 4.45
3108 6542 4.722700 GCGCAGAAGGCCAGGGAA 62.723 66.667 5.01 0.00 40.31 3.97
3109 6543 2.747855 CGCAGAAGGCCAGGGAAC 60.748 66.667 5.01 0.00 40.31 3.62
3110 6544 2.747855 GCAGAAGGCCAGGGAACG 60.748 66.667 5.01 0.00 36.11 3.95
3111 6545 2.747855 CAGAAGGCCAGGGAACGC 60.748 66.667 5.01 0.00 0.00 4.84
3112 6546 4.035102 AGAAGGCCAGGGAACGCC 62.035 66.667 5.01 0.00 46.09 5.68
3118 6552 3.058160 CCAGGGAACGCCAGCAAG 61.058 66.667 0.00 0.00 35.15 4.01
3119 6553 3.741476 CAGGGAACGCCAGCAAGC 61.741 66.667 0.00 0.00 35.15 4.01
3122 6556 3.064324 GGAACGCCAGCAAGCCAT 61.064 61.111 0.00 0.00 0.00 4.40
3123 6557 2.180017 GAACGCCAGCAAGCCATG 59.820 61.111 0.00 0.00 0.00 3.66
3137 6571 5.179045 CAAGCCATGCAGAAGTAAATAGG 57.821 43.478 0.00 0.00 0.00 2.57
3138 6572 3.825328 AGCCATGCAGAAGTAAATAGGG 58.175 45.455 0.00 0.00 0.00 3.53
3139 6573 2.294512 GCCATGCAGAAGTAAATAGGGC 59.705 50.000 0.00 0.00 0.00 5.19
3140 6574 2.887152 CCATGCAGAAGTAAATAGGGCC 59.113 50.000 0.00 0.00 0.00 5.80
3141 6575 2.325583 TGCAGAAGTAAATAGGGCCG 57.674 50.000 0.00 0.00 0.00 6.13
3142 6576 1.134220 TGCAGAAGTAAATAGGGCCGG 60.134 52.381 0.00 0.00 0.00 6.13
3143 6577 1.140252 GCAGAAGTAAATAGGGCCGGA 59.860 52.381 5.05 0.00 0.00 5.14
3144 6578 2.420967 GCAGAAGTAAATAGGGCCGGAA 60.421 50.000 5.05 0.00 0.00 4.30
3145 6579 3.203716 CAGAAGTAAATAGGGCCGGAAC 58.796 50.000 5.05 0.00 0.00 3.62
3146 6580 2.172082 AGAAGTAAATAGGGCCGGAACC 59.828 50.000 5.05 6.57 0.00 3.62
3147 6581 1.587066 AGTAAATAGGGCCGGAACCA 58.413 50.000 5.05 0.00 0.00 3.67
3148 6582 1.211212 AGTAAATAGGGCCGGAACCAC 59.789 52.381 5.05 0.00 0.00 4.16
3149 6583 0.547553 TAAATAGGGCCGGAACCACC 59.452 55.000 5.05 0.00 0.00 4.61
3150 6584 1.212250 AAATAGGGCCGGAACCACCT 61.212 55.000 5.05 6.47 37.13 4.00
3151 6585 1.632965 AATAGGGCCGGAACCACCTC 61.633 60.000 5.05 0.00 34.59 3.85
3154 6588 4.011517 GGCCGGAACCACCTCGAA 62.012 66.667 5.05 0.00 36.31 3.71
3155 6589 2.031465 GCCGGAACCACCTCGAAA 59.969 61.111 5.05 0.00 36.31 3.46
3156 6590 2.033194 GCCGGAACCACCTCGAAAG 61.033 63.158 5.05 0.00 36.31 2.62
3157 6591 2.033194 CCGGAACCACCTCGAAAGC 61.033 63.158 0.00 0.00 36.31 3.51
3158 6592 1.301401 CGGAACCACCTCGAAAGCA 60.301 57.895 0.00 0.00 36.31 3.91
3159 6593 0.882927 CGGAACCACCTCGAAAGCAA 60.883 55.000 0.00 0.00 36.31 3.91
3160 6594 1.534729 GGAACCACCTCGAAAGCAAT 58.465 50.000 0.00 0.00 35.41 3.56
3161 6595 1.200020 GGAACCACCTCGAAAGCAATG 59.800 52.381 0.00 0.00 35.41 2.82
3162 6596 0.598065 AACCACCTCGAAAGCAATGC 59.402 50.000 0.00 0.00 0.00 3.56
3163 6597 0.537143 ACCACCTCGAAAGCAATGCA 60.537 50.000 8.35 0.00 0.00 3.96
3164 6598 0.813184 CCACCTCGAAAGCAATGCAT 59.187 50.000 8.35 0.00 0.00 3.96
3165 6599 1.203052 CCACCTCGAAAGCAATGCATT 59.797 47.619 5.99 5.99 0.00 3.56
3166 6600 2.523015 CACCTCGAAAGCAATGCATTC 58.477 47.619 9.53 12.58 33.66 2.67
3167 6601 2.163010 CACCTCGAAAGCAATGCATTCT 59.837 45.455 18.94 7.24 34.65 2.40
3168 6602 2.821969 ACCTCGAAAGCAATGCATTCTT 59.178 40.909 18.94 12.77 34.65 2.52
3169 6603 3.256631 ACCTCGAAAGCAATGCATTCTTT 59.743 39.130 24.41 24.41 34.65 2.52
3170 6604 4.240096 CCTCGAAAGCAATGCATTCTTTT 58.760 39.130 24.70 20.15 34.65 2.27
3171 6605 4.325472 CCTCGAAAGCAATGCATTCTTTTC 59.675 41.667 24.70 23.92 34.65 2.29
3172 6606 3.913763 TCGAAAGCAATGCATTCTTTTCG 59.086 39.130 34.59 34.59 34.65 3.46
3173 6607 3.480825 CGAAAGCAATGCATTCTTTTCGC 60.481 43.478 32.42 23.14 34.65 4.70
3174 6608 3.308438 AAGCAATGCATTCTTTTCGCT 57.692 38.095 9.53 11.32 0.00 4.93
3175 6609 2.602878 AGCAATGCATTCTTTTCGCTG 58.397 42.857 16.32 2.39 0.00 5.18
3176 6610 1.060122 GCAATGCATTCTTTTCGCTGC 59.940 47.619 9.53 3.52 35.21 5.25
3178 6612 2.273370 ATGCATTCTTTTCGCTGCAG 57.727 45.000 10.11 10.11 46.67 4.41
3179 6613 0.953727 TGCATTCTTTTCGCTGCAGT 59.046 45.000 16.64 0.00 39.54 4.40
3180 6614 2.150390 TGCATTCTTTTCGCTGCAGTA 58.850 42.857 16.64 0.57 39.54 2.74
3181 6615 2.160219 TGCATTCTTTTCGCTGCAGTAG 59.840 45.455 16.64 10.25 39.54 2.57
3182 6616 2.160417 GCATTCTTTTCGCTGCAGTAGT 59.840 45.455 16.64 0.00 34.77 2.73
3183 6617 3.370978 GCATTCTTTTCGCTGCAGTAGTA 59.629 43.478 16.64 0.95 34.77 1.82
3184 6618 4.725169 GCATTCTTTTCGCTGCAGTAGTAC 60.725 45.833 16.64 0.00 34.77 2.73
3185 6619 3.936372 TCTTTTCGCTGCAGTAGTACT 57.064 42.857 16.64 0.00 0.00 2.73
3186 6620 5.381174 TTCTTTTCGCTGCAGTAGTACTA 57.619 39.130 16.64 0.00 0.00 1.82
3187 6621 4.730657 TCTTTTCGCTGCAGTAGTACTAC 58.269 43.478 23.03 23.03 36.35 2.73
3188 6622 4.458295 TCTTTTCGCTGCAGTAGTACTACT 59.542 41.667 26.61 26.61 46.52 2.57
3189 6623 5.645067 TCTTTTCGCTGCAGTAGTACTACTA 59.355 40.000 30.34 17.82 43.98 1.82
3205 6639 8.935614 AGTACTACTACTATGTTATGCCATGA 57.064 34.615 0.00 0.00 30.81 3.07
3206 6640 9.535170 AGTACTACTACTATGTTATGCCATGAT 57.465 33.333 0.00 0.00 30.81 2.45
3212 6646 8.137437 ACTACTATGTTATGCCATGATTTTTGC 58.863 33.333 0.00 0.00 0.00 3.68
3213 6647 7.116075 ACTATGTTATGCCATGATTTTTGCT 57.884 32.000 0.00 0.00 0.00 3.91
3214 6648 6.982141 ACTATGTTATGCCATGATTTTTGCTG 59.018 34.615 0.00 0.00 0.00 4.41
3215 6649 4.505808 TGTTATGCCATGATTTTTGCTGG 58.494 39.130 0.00 0.00 0.00 4.85
3221 6655 2.745281 CCATGATTTTTGCTGGCTTTGG 59.255 45.455 0.00 0.00 0.00 3.28
3222 6656 3.404899 CATGATTTTTGCTGGCTTTGGT 58.595 40.909 0.00 0.00 0.00 3.67
3223 6657 3.557228 TGATTTTTGCTGGCTTTGGTT 57.443 38.095 0.00 0.00 0.00 3.67
3224 6658 3.204526 TGATTTTTGCTGGCTTTGGTTG 58.795 40.909 0.00 0.00 0.00 3.77
3225 6659 3.118482 TGATTTTTGCTGGCTTTGGTTGA 60.118 39.130 0.00 0.00 0.00 3.18
3226 6660 3.340814 TTTTTGCTGGCTTTGGTTGAA 57.659 38.095 0.00 0.00 0.00 2.69
3227 6661 2.307934 TTTGCTGGCTTTGGTTGAAC 57.692 45.000 0.00 0.00 0.00 3.18
3228 6662 1.484038 TTGCTGGCTTTGGTTGAACT 58.516 45.000 0.00 0.00 0.00 3.01
3229 6663 1.484038 TGCTGGCTTTGGTTGAACTT 58.516 45.000 0.00 0.00 0.00 2.66
3230 6664 1.830477 TGCTGGCTTTGGTTGAACTTT 59.170 42.857 0.00 0.00 0.00 2.66
3231 6665 2.204237 GCTGGCTTTGGTTGAACTTTG 58.796 47.619 0.00 0.00 0.00 2.77
3232 6666 2.159114 GCTGGCTTTGGTTGAACTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
3233 6667 3.447742 CTGGCTTTGGTTGAACTTTGAC 58.552 45.455 0.00 0.00 0.00 3.18
3234 6668 2.167487 TGGCTTTGGTTGAACTTTGACC 59.833 45.455 0.00 0.00 0.00 4.02
3235 6669 2.430694 GGCTTTGGTTGAACTTTGACCT 59.569 45.455 0.00 0.00 34.52 3.85
3236 6670 3.118775 GGCTTTGGTTGAACTTTGACCTT 60.119 43.478 0.00 0.00 34.52 3.50
3237 6671 4.503910 GCTTTGGTTGAACTTTGACCTTT 58.496 39.130 0.00 0.00 34.52 3.11
3238 6672 5.394773 GGCTTTGGTTGAACTTTGACCTTTA 60.395 40.000 0.00 0.00 34.52 1.85
3239 6673 6.280643 GCTTTGGTTGAACTTTGACCTTTAT 58.719 36.000 0.00 0.00 34.52 1.40
3240 6674 6.420903 GCTTTGGTTGAACTTTGACCTTTATC 59.579 38.462 0.00 0.00 34.52 1.75
3241 6675 7.654022 TTTGGTTGAACTTTGACCTTTATCT 57.346 32.000 0.00 0.00 34.52 1.98
3242 6676 7.654022 TTGGTTGAACTTTGACCTTTATCTT 57.346 32.000 0.00 0.00 34.52 2.40
3243 6677 7.272037 TGGTTGAACTTTGACCTTTATCTTC 57.728 36.000 0.00 0.00 34.52 2.87
3244 6678 7.060421 TGGTTGAACTTTGACCTTTATCTTCT 58.940 34.615 0.00 0.00 34.52 2.85
3245 6679 7.559897 TGGTTGAACTTTGACCTTTATCTTCTT 59.440 33.333 0.00 0.00 34.52 2.52
3246 6680 9.063615 GGTTGAACTTTGACCTTTATCTTCTTA 57.936 33.333 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.745458 GCAAGTCTATGCTCTGGCTTATC 59.255 47.826 0.00 0.00 43.06 1.75
40 41 1.561542 CAGACTTTAGGTGGAGGCCAT 59.438 52.381 5.01 0.00 35.28 4.40
93 133 8.219868 TCAATTACACCAATGATCCATATGTCT 58.780 33.333 1.24 0.00 0.00 3.41
118 158 7.796320 AGTAATCACTAAGGCTATGCCATGATC 60.796 40.741 11.38 4.35 41.95 2.92
135 179 4.720273 ACGGGATTAGGGAAAGTAATCACT 59.280 41.667 4.14 0.00 37.91 3.41
182 1447 0.385974 CAGTTACAGTTTGCAGGCGC 60.386 55.000 0.00 0.00 39.24 6.53
183 1448 1.225855 TCAGTTACAGTTTGCAGGCG 58.774 50.000 0.00 0.00 0.00 5.52
184 1449 3.923017 AATCAGTTACAGTTTGCAGGC 57.077 42.857 0.00 0.00 0.00 4.85
185 1450 5.335127 GCATAATCAGTTACAGTTTGCAGG 58.665 41.667 0.00 0.00 0.00 4.85
186 1451 5.106197 TGGCATAATCAGTTACAGTTTGCAG 60.106 40.000 0.00 0.00 0.00 4.41
187 1452 4.764308 TGGCATAATCAGTTACAGTTTGCA 59.236 37.500 0.00 0.00 0.00 4.08
188 1453 5.095490 GTGGCATAATCAGTTACAGTTTGC 58.905 41.667 0.00 0.00 0.00 3.68
189 1454 5.640732 GGTGGCATAATCAGTTACAGTTTG 58.359 41.667 0.00 0.00 0.00 2.93
190 1455 4.394920 CGGTGGCATAATCAGTTACAGTTT 59.605 41.667 0.00 0.00 0.00 2.66
191 1456 3.938963 CGGTGGCATAATCAGTTACAGTT 59.061 43.478 0.00 0.00 0.00 3.16
192 1457 3.196901 TCGGTGGCATAATCAGTTACAGT 59.803 43.478 0.00 0.00 0.00 3.55
193 1458 3.792401 TCGGTGGCATAATCAGTTACAG 58.208 45.455 0.00 0.00 0.00 2.74
194 1459 3.897141 TCGGTGGCATAATCAGTTACA 57.103 42.857 0.00 0.00 0.00 2.41
195 1460 3.428870 CGATCGGTGGCATAATCAGTTAC 59.571 47.826 7.38 0.00 0.00 2.50
196 1461 3.319689 TCGATCGGTGGCATAATCAGTTA 59.680 43.478 16.41 0.00 0.00 2.24
197 1462 2.102420 TCGATCGGTGGCATAATCAGTT 59.898 45.455 16.41 0.00 0.00 3.16
198 1463 1.686587 TCGATCGGTGGCATAATCAGT 59.313 47.619 16.41 0.00 0.00 3.41
199 1464 2.029918 TCTCGATCGGTGGCATAATCAG 60.030 50.000 16.41 0.25 0.00 2.90
200 1465 1.960689 TCTCGATCGGTGGCATAATCA 59.039 47.619 16.41 0.00 0.00 2.57
201 1466 2.724977 TCTCGATCGGTGGCATAATC 57.275 50.000 16.41 0.00 0.00 1.75
202 1467 2.932622 GCATCTCGATCGGTGGCATAAT 60.933 50.000 16.41 0.00 0.00 1.28
203 1468 1.605457 GCATCTCGATCGGTGGCATAA 60.605 52.381 16.41 0.00 0.00 1.90
204 1469 0.038251 GCATCTCGATCGGTGGCATA 60.038 55.000 16.41 0.00 0.00 3.14
205 1470 1.301244 GCATCTCGATCGGTGGCAT 60.301 57.895 16.41 0.00 0.00 4.40
206 1471 2.106938 GCATCTCGATCGGTGGCA 59.893 61.111 16.41 0.00 0.00 4.92
207 1472 1.953138 CAGCATCTCGATCGGTGGC 60.953 63.158 16.41 13.74 0.00 5.01
208 1473 0.318529 CTCAGCATCTCGATCGGTGG 60.319 60.000 16.41 6.31 0.00 4.61
209 1474 0.383590 ACTCAGCATCTCGATCGGTG 59.616 55.000 16.41 12.77 0.00 4.94
210 1475 1.968704 TACTCAGCATCTCGATCGGT 58.031 50.000 16.41 4.19 0.00 4.69
211 1476 3.567576 ATTACTCAGCATCTCGATCGG 57.432 47.619 16.41 6.26 0.00 4.18
212 1477 4.742167 ACAAATTACTCAGCATCTCGATCG 59.258 41.667 9.36 9.36 0.00 3.69
213 1478 5.050499 CCACAAATTACTCAGCATCTCGATC 60.050 44.000 0.00 0.00 0.00 3.69
214 1479 4.813161 CCACAAATTACTCAGCATCTCGAT 59.187 41.667 0.00 0.00 0.00 3.59
215 1480 4.183865 CCACAAATTACTCAGCATCTCGA 58.816 43.478 0.00 0.00 0.00 4.04
216 1481 3.242543 GCCACAAATTACTCAGCATCTCG 60.243 47.826 0.00 0.00 0.00 4.04
217 1482 3.691118 TGCCACAAATTACTCAGCATCTC 59.309 43.478 0.00 0.00 0.00 2.75
218 1483 3.689347 TGCCACAAATTACTCAGCATCT 58.311 40.909 0.00 0.00 0.00 2.90
219 1484 3.181493 CCTGCCACAAATTACTCAGCATC 60.181 47.826 0.00 0.00 0.00 3.91
220 1485 2.756760 CCTGCCACAAATTACTCAGCAT 59.243 45.455 0.00 0.00 0.00 3.79
221 1486 2.161855 CCTGCCACAAATTACTCAGCA 58.838 47.619 0.00 0.00 0.00 4.41
222 1487 1.474077 CCCTGCCACAAATTACTCAGC 59.526 52.381 0.00 0.00 0.00 4.26
223 1488 2.489329 CACCCTGCCACAAATTACTCAG 59.511 50.000 0.00 0.00 0.00 3.35
224 1489 2.513753 CACCCTGCCACAAATTACTCA 58.486 47.619 0.00 0.00 0.00 3.41
225 1490 1.818674 CCACCCTGCCACAAATTACTC 59.181 52.381 0.00 0.00 0.00 2.59
226 1491 1.427368 TCCACCCTGCCACAAATTACT 59.573 47.619 0.00 0.00 0.00 2.24
227 1492 1.917872 TCCACCCTGCCACAAATTAC 58.082 50.000 0.00 0.00 0.00 1.89
228 1493 2.042297 TGATCCACCCTGCCACAAATTA 59.958 45.455 0.00 0.00 0.00 1.40
229 1494 1.203162 TGATCCACCCTGCCACAAATT 60.203 47.619 0.00 0.00 0.00 1.82
230 1495 0.409092 TGATCCACCCTGCCACAAAT 59.591 50.000 0.00 0.00 0.00 2.32
231 1496 0.251297 CTGATCCACCCTGCCACAAA 60.251 55.000 0.00 0.00 0.00 2.83
232 1497 1.379916 CTGATCCACCCTGCCACAA 59.620 57.895 0.00 0.00 0.00 3.33
233 1498 3.080641 CTGATCCACCCTGCCACA 58.919 61.111 0.00 0.00 0.00 4.17
234 1499 2.439156 GCTGATCCACCCTGCCAC 60.439 66.667 0.00 0.00 0.00 5.01
235 1500 3.731728 GGCTGATCCACCCTGCCA 61.732 66.667 0.00 0.00 44.75 4.92
236 1501 3.415087 AGGCTGATCCACCCTGCC 61.415 66.667 0.00 0.00 45.43 4.85
237 1502 2.124403 CAGGCTGATCCACCCTGC 60.124 66.667 9.42 0.00 39.64 4.85
239 1504 2.976490 GCACAGGCTGATCCACCCT 61.976 63.158 23.66 0.00 37.29 4.34
240 1505 2.439156 GCACAGGCTGATCCACCC 60.439 66.667 23.66 0.00 37.29 4.61
258 1523 4.675161 TTTGCATCCCGGCAGCCA 62.675 61.111 13.30 0.00 45.88 4.75
259 1524 2.941616 TTTTTGCATCCCGGCAGCC 61.942 57.895 0.00 0.00 45.88 4.85
260 1525 2.656055 TTTTTGCATCCCGGCAGC 59.344 55.556 0.00 0.00 45.88 5.25
292 1557 3.668981 TATTTGTGGGGACTGGCACGG 62.669 57.143 0.00 0.00 42.99 4.94
293 1558 0.322098 TATTTGTGGGGACTGGCACG 60.322 55.000 0.00 0.00 0.00 5.34
294 1559 1.271926 ACTATTTGTGGGGACTGGCAC 60.272 52.381 0.00 0.00 0.00 5.01
295 1560 1.072266 ACTATTTGTGGGGACTGGCA 58.928 50.000 0.00 0.00 0.00 4.92
296 1561 1.004277 TCACTATTTGTGGGGACTGGC 59.996 52.381 0.00 0.00 46.20 4.85
297 1562 3.652057 ATCACTATTTGTGGGGACTGG 57.348 47.619 0.00 0.00 46.20 4.00
298 1563 4.335416 ACAATCACTATTTGTGGGGACTG 58.665 43.478 0.00 0.00 46.20 3.51
299 1564 4.657814 ACAATCACTATTTGTGGGGACT 57.342 40.909 0.00 0.00 46.20 3.85
300 1565 5.250200 TGTACAATCACTATTTGTGGGGAC 58.750 41.667 0.00 0.00 46.20 4.46
301 1566 5.506730 TGTACAATCACTATTTGTGGGGA 57.493 39.130 0.00 0.00 46.20 4.81
302 1567 7.054124 ACTATGTACAATCACTATTTGTGGGG 58.946 38.462 0.00 0.00 46.20 4.96
303 1568 9.261180 CTACTATGTACAATCACTATTTGTGGG 57.739 37.037 0.00 0.00 46.20 4.61
314 1579 6.761242 GCCATTGTGTCTACTATGTACAATCA 59.239 38.462 0.00 0.00 39.25 2.57
352 1642 6.775594 ACATACAGCTGTAATGTCTACTGA 57.224 37.500 29.26 5.29 33.76 3.41
357 1647 7.556635 TGTCTACTACATACAGCTGTAATGTCT 59.443 37.037 29.16 21.91 33.76 3.41
365 1655 4.800993 GCAACTGTCTACTACATACAGCTG 59.199 45.833 13.48 13.48 43.53 4.24
366 1656 4.462834 TGCAACTGTCTACTACATACAGCT 59.537 41.667 0.00 0.00 43.53 4.24
373 1663 4.523173 AGCTAGTTGCAACTGTCTACTACA 59.477 41.667 36.50 16.11 45.94 2.74
374 1664 5.061920 AGCTAGTTGCAACTGTCTACTAC 57.938 43.478 36.50 18.21 45.94 2.73
378 1668 4.600692 TCAAGCTAGTTGCAACTGTCTA 57.399 40.909 36.50 19.23 45.94 2.59
482 1798 1.202568 TCCAGCATCGAATAGCCAGTG 60.203 52.381 0.00 0.00 0.00 3.66
557 1875 3.693807 TCGACTACACACCAGAACCTAT 58.306 45.455 0.00 0.00 0.00 2.57
561 1883 3.364023 CGAATTCGACTACACACCAGAAC 59.636 47.826 23.29 0.00 43.02 3.01
611 1934 1.859427 GCATGTGGTGTGGCAGACTG 61.859 60.000 14.88 6.08 0.00 3.51
706 2032 4.389374 TCTTTGTGAATGACTTGACCTCC 58.611 43.478 0.00 0.00 0.00 4.30
777 2104 5.440610 TGAAGATAAATTCAGGGGAGCTTC 58.559 41.667 0.00 0.00 34.31 3.86
786 2151 9.844257 AGACCTCCTAATTGAAGATAAATTCAG 57.156 33.333 0.00 0.00 40.16 3.02
821 2192 4.778534 ATGTTCTTCTCAACAGCCAATG 57.221 40.909 0.00 0.00 39.63 2.82
822 2193 7.472334 AAATATGTTCTTCTCAACAGCCAAT 57.528 32.000 0.00 0.00 39.63 3.16
872 2251 2.737180 CGTGTGTCTGGTGAGCCT 59.263 61.111 0.00 0.00 35.27 4.58
944 3201 4.015872 AGCTAACTGGGTTTCGAATCAA 57.984 40.909 0.00 0.00 0.00 2.57
945 3202 3.695830 AGCTAACTGGGTTTCGAATCA 57.304 42.857 0.00 0.00 0.00 2.57
946 3203 3.426292 GCAAGCTAACTGGGTTTCGAATC 60.426 47.826 0.00 0.00 0.00 2.52
947 3204 2.488153 GCAAGCTAACTGGGTTTCGAAT 59.512 45.455 0.00 0.00 0.00 3.34
948 3205 1.877443 GCAAGCTAACTGGGTTTCGAA 59.123 47.619 0.00 0.00 0.00 3.71
973 3230 0.331616 GGGTGTGTGGGGAGCTTTAT 59.668 55.000 0.00 0.00 0.00 1.40
1080 3341 6.230472 CGGACCATCAAATATCTGGTTCATA 58.770 40.000 0.55 0.00 43.23 2.15
1406 4684 5.512298 GCTGGACCCCTTAAACCTAATAAA 58.488 41.667 0.00 0.00 0.00 1.40
1432 4710 4.757149 CCTACAAAGTCTCCAAGAACCTTG 59.243 45.833 0.00 0.00 0.00 3.61
1507 4795 2.551912 GGCGACCACAACACCTTGG 61.552 63.158 0.00 0.00 39.00 3.61
1594 4882 0.251297 TCACCACTTTGGGGATGCAG 60.251 55.000 0.00 0.00 46.95 4.41
1686 4978 7.898014 ATAGGTGATCAAGCGATACCATATA 57.102 36.000 0.00 0.00 32.24 0.86
1690 4982 5.386958 GTATAGGTGATCAAGCGATACCA 57.613 43.478 0.00 0.00 38.31 3.25
1692 4984 4.219944 TGGGTATAGGTGATCAAGCGATAC 59.780 45.833 0.00 7.79 41.48 2.24
1694 4986 3.239449 TGGGTATAGGTGATCAAGCGAT 58.761 45.455 0.00 0.00 33.31 4.58
1830 5167 8.598916 TGGTCAGTATAGGAAAACATTACTGAA 58.401 33.333 11.44 0.00 42.39 3.02
1836 5173 6.375455 CAGCTTGGTCAGTATAGGAAAACATT 59.625 38.462 0.00 0.00 0.00 2.71
2007 5401 4.037923 GGAAGGAGCAAGAGTGATCTAGAG 59.962 50.000 0.00 0.00 40.17 2.43
2184 5578 1.308998 CGTGCATAGAATCCCCCAAC 58.691 55.000 0.00 0.00 0.00 3.77
2211 5610 1.901591 CCAAGTGCATTGACAGACCT 58.098 50.000 9.56 0.00 41.83 3.85
2289 5688 3.781307 CAAGGCATCGACCGGGGA 61.781 66.667 6.32 2.46 33.69 4.81
2352 5752 2.480419 ACAAGATCGCGACAAGGAAAAG 59.520 45.455 12.93 0.00 0.00 2.27
2365 5765 8.540492 GGAAAACACATAGTATACACAAGATCG 58.460 37.037 5.50 0.00 0.00 3.69
2377 5777 9.328845 ACTTAACGAAAAGGAAAACACATAGTA 57.671 29.630 0.00 0.00 0.00 1.82
2378 5778 8.126700 CACTTAACGAAAAGGAAAACACATAGT 58.873 33.333 0.00 0.00 0.00 2.12
2383 5783 5.004061 GCACACTTAACGAAAAGGAAAACAC 59.996 40.000 0.00 0.00 0.00 3.32
2385 5785 4.501559 GGCACACTTAACGAAAAGGAAAAC 59.498 41.667 0.00 0.00 0.00 2.43
2441 5841 9.953825 CATCAAGTTCTTAGTACATCGTTTTAC 57.046 33.333 0.00 0.00 0.00 2.01
2443 5843 8.827177 TCATCAAGTTCTTAGTACATCGTTTT 57.173 30.769 0.00 0.00 0.00 2.43
2460 5860 4.070716 CAAAGAGCCAAGTCTCATCAAGT 58.929 43.478 0.00 0.00 35.59 3.16
2467 5867 4.130118 TGAAGAACAAAGAGCCAAGTCTC 58.870 43.478 0.00 0.00 0.00 3.36
2468 5868 4.156455 TGAAGAACAAAGAGCCAAGTCT 57.844 40.909 0.00 0.00 0.00 3.24
2497 5897 2.874849 ACACAAAACAAGCTCGGTTTG 58.125 42.857 13.64 13.64 38.40 2.93
2531 5931 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2533 5933 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2535 5935 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2536 5936 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2537 5937 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2538 5938 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2539 5939 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2540 5940 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2541 5941 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2542 5942 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2543 5943 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2544 5944 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2545 5945 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2546 5946 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2547 5947 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2548 5948 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2549 5949 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2550 5950 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2551 5951 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2552 5952 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
2553 5953 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
2554 5954 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
2555 5955 3.381590 CACGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
2556 5956 3.131223 ACACGAGAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
2557 5957 3.096852 ACACGAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
2558 5958 3.190079 CACACGAGAGAGAGAGAGAGAG 58.810 54.545 0.00 0.00 0.00 3.20
2559 5959 2.565391 ACACACGAGAGAGAGAGAGAGA 59.435 50.000 0.00 0.00 0.00 3.10
2560 5960 2.972625 ACACACGAGAGAGAGAGAGAG 58.027 52.381 0.00 0.00 0.00 3.20
2561 5961 3.070748 CAACACACGAGAGAGAGAGAGA 58.929 50.000 0.00 0.00 0.00 3.10
2562 5962 2.811431 ACAACACACGAGAGAGAGAGAG 59.189 50.000 0.00 0.00 0.00 3.20
2563 5963 2.852449 ACAACACACGAGAGAGAGAGA 58.148 47.619 0.00 0.00 0.00 3.10
2564 5964 3.560503 GAACAACACACGAGAGAGAGAG 58.439 50.000 0.00 0.00 0.00 3.20
2565 5965 2.293677 GGAACAACACACGAGAGAGAGA 59.706 50.000 0.00 0.00 0.00 3.10
2566 5966 2.294791 AGGAACAACACACGAGAGAGAG 59.705 50.000 0.00 0.00 0.00 3.20
2567 5967 2.307768 AGGAACAACACACGAGAGAGA 58.692 47.619 0.00 0.00 0.00 3.10
2568 5968 2.802787 AGGAACAACACACGAGAGAG 57.197 50.000 0.00 0.00 0.00 3.20
2569 5969 2.953648 TGTAGGAACAACACACGAGAGA 59.046 45.455 0.00 0.00 30.91 3.10
2570 5970 3.050619 GTGTAGGAACAACACACGAGAG 58.949 50.000 1.66 0.00 45.26 3.20
2571 5971 3.088194 GTGTAGGAACAACACACGAGA 57.912 47.619 1.66 0.00 45.26 4.04
2607 6007 7.377398 TGTGTTGCAAAATTGTAGCTATGAAT 58.623 30.769 0.00 0.00 0.00 2.57
2637 6039 6.377996 TGCAGAACTAGGAATTGCAATGTATT 59.622 34.615 13.82 0.00 41.34 1.89
2652 6054 7.766278 ACCTTTACTTGATACATGCAGAACTAG 59.234 37.037 0.00 0.00 0.00 2.57
2744 6147 9.739276 TGTTTCTGTCATATTTGAAGACCTAAT 57.261 29.630 0.00 0.00 32.48 1.73
2765 6168 6.457528 GCCACTAATGCATAGAAGAGTGTTTC 60.458 42.308 17.31 8.23 33.93 2.78
2773 6176 7.380602 GCTATTTTTGCCACTAATGCATAGAAG 59.619 37.037 0.00 0.45 38.76 2.85
2775 6179 6.547141 AGCTATTTTTGCCACTAATGCATAGA 59.453 34.615 0.00 0.00 38.76 1.98
2776 6180 6.742109 AGCTATTTTTGCCACTAATGCATAG 58.258 36.000 0.00 0.44 38.76 2.23
2777 6181 6.713762 AGCTATTTTTGCCACTAATGCATA 57.286 33.333 0.00 0.00 38.76 3.14
2817 6251 1.615392 CCTTTGCCTCCTTGAAAGGTG 59.385 52.381 8.91 6.58 46.54 4.00
2830 6264 1.808411 TGACGATCAAGTCCTTTGCC 58.192 50.000 0.00 0.00 40.26 4.52
2832 6266 5.817296 TCCATATTGACGATCAAGTCCTTTG 59.183 40.000 0.00 0.00 40.05 2.77
2833 6267 5.989477 TCCATATTGACGATCAAGTCCTTT 58.011 37.500 0.00 0.00 40.05 3.11
2846 6280 9.162764 ACAACTAACAACTGTATCCATATTGAC 57.837 33.333 0.00 0.00 0.00 3.18
2882 6316 9.614792 GATGACTTGAAAGGTGGTAATATTAGT 57.385 33.333 0.00 0.00 0.00 2.24
2883 6317 9.838339 AGATGACTTGAAAGGTGGTAATATTAG 57.162 33.333 0.00 0.00 0.00 1.73
2885 6319 9.178758 GAAGATGACTTGAAAGGTGGTAATATT 57.821 33.333 0.00 0.00 36.39 1.28
2886 6320 8.552296 AGAAGATGACTTGAAAGGTGGTAATAT 58.448 33.333 0.00 0.00 36.39 1.28
2887 6321 7.824289 CAGAAGATGACTTGAAAGGTGGTAATA 59.176 37.037 0.00 0.00 36.39 0.98
2888 6322 6.656693 CAGAAGATGACTTGAAAGGTGGTAAT 59.343 38.462 0.00 0.00 36.39 1.89
2889 6323 5.997746 CAGAAGATGACTTGAAAGGTGGTAA 59.002 40.000 0.00 0.00 36.39 2.85
2890 6324 5.071788 ACAGAAGATGACTTGAAAGGTGGTA 59.928 40.000 0.00 0.00 36.39 3.25
2891 6325 4.141390 ACAGAAGATGACTTGAAAGGTGGT 60.141 41.667 0.00 0.00 36.39 4.16
2892 6326 4.392940 ACAGAAGATGACTTGAAAGGTGG 58.607 43.478 0.00 0.00 36.39 4.61
2893 6327 5.059161 TGACAGAAGATGACTTGAAAGGTG 58.941 41.667 0.00 0.00 36.39 4.00
2894 6328 5.296151 TGACAGAAGATGACTTGAAAGGT 57.704 39.130 0.00 0.00 36.39 3.50
2895 6329 5.762218 AGTTGACAGAAGATGACTTGAAAGG 59.238 40.000 0.00 0.00 36.39 3.11
2896 6330 6.857777 AGTTGACAGAAGATGACTTGAAAG 57.142 37.500 0.00 0.00 36.39 2.62
2897 6331 6.599244 ACAAGTTGACAGAAGATGACTTGAAA 59.401 34.615 16.84 0.00 43.95 2.69
2898 6332 6.115446 ACAAGTTGACAGAAGATGACTTGAA 58.885 36.000 16.84 0.00 43.95 2.69
2899 6333 5.674525 ACAAGTTGACAGAAGATGACTTGA 58.325 37.500 16.84 0.00 43.95 3.02
2900 6334 5.998454 ACAAGTTGACAGAAGATGACTTG 57.002 39.130 10.54 10.83 45.64 3.16
2901 6335 6.352516 AGAACAAGTTGACAGAAGATGACTT 58.647 36.000 10.54 0.00 39.24 3.01
2902 6336 5.923204 AGAACAAGTTGACAGAAGATGACT 58.077 37.500 10.54 0.00 0.00 3.41
2903 6337 6.481644 AGAAGAACAAGTTGACAGAAGATGAC 59.518 38.462 10.54 0.00 0.00 3.06
2904 6338 6.586344 AGAAGAACAAGTTGACAGAAGATGA 58.414 36.000 10.54 0.00 0.00 2.92
2905 6339 6.857777 AGAAGAACAAGTTGACAGAAGATG 57.142 37.500 10.54 0.00 0.00 2.90
2906 6340 7.158021 CCTAGAAGAACAAGTTGACAGAAGAT 58.842 38.462 10.54 0.00 0.00 2.40
2907 6341 6.098409 ACCTAGAAGAACAAGTTGACAGAAGA 59.902 38.462 10.54 0.00 0.00 2.87
2915 6349 5.476091 AGAGGACCTAGAAGAACAAGTTG 57.524 43.478 0.00 0.00 0.00 3.16
2931 6365 4.273148 TGAACCTTTTGCTCTAGAGGAC 57.727 45.455 21.23 6.17 33.47 3.85
2934 6368 3.944015 CCCATGAACCTTTTGCTCTAGAG 59.056 47.826 15.85 15.85 0.00 2.43
2937 6371 2.647299 TCCCCATGAACCTTTTGCTCTA 59.353 45.455 0.00 0.00 0.00 2.43
2939 6373 1.821136 CTCCCCATGAACCTTTTGCTC 59.179 52.381 0.00 0.00 0.00 4.26
2946 6380 9.506042 AATTAATTTTAATCTCCCCATGAACCT 57.494 29.630 0.00 0.00 32.46 3.50
2981 6415 7.159372 AGATGGTTATGTTTGTTCTTACGACT 58.841 34.615 0.00 0.00 0.00 4.18
3021 6455 7.201350 GGCATTAATTACGAACTCTTTGCTTTG 60.201 37.037 0.00 0.00 0.00 2.77
3026 6460 6.102006 TCGGCATTAATTACGAACTCTTTG 57.898 37.500 8.36 0.00 31.79 2.77
3027 6461 6.730960 TTCGGCATTAATTACGAACTCTTT 57.269 33.333 15.96 0.00 40.00 2.52
3031 6465 6.932400 TGGATATTCGGCATTAATTACGAACT 59.068 34.615 20.06 13.39 46.31 3.01
3045 6479 5.552178 AGTCTAGGAATTTGGATATTCGGC 58.448 41.667 0.00 0.00 35.76 5.54
3051 6485 6.264744 CACGGACTAGTCTAGGAATTTGGATA 59.735 42.308 21.88 0.00 0.00 2.59
3060 6494 1.472904 CGCTCACGGACTAGTCTAGGA 60.473 57.143 21.88 14.70 34.97 2.94
3061 6495 0.938713 CGCTCACGGACTAGTCTAGG 59.061 60.000 21.88 13.75 34.97 3.02
3074 6508 4.899239 CATCCCGCCTCCGCTCAC 62.899 72.222 0.00 0.00 0.00 3.51
3086 6520 4.802051 TGGCCTTCTGCGCATCCC 62.802 66.667 12.24 7.77 42.61 3.85
3087 6521 3.207669 CTGGCCTTCTGCGCATCC 61.208 66.667 12.24 8.17 42.61 3.51
3088 6522 3.207669 CCTGGCCTTCTGCGCATC 61.208 66.667 12.24 0.00 42.61 3.91
3089 6523 4.809496 CCCTGGCCTTCTGCGCAT 62.809 66.667 12.24 0.00 42.61 4.73
3091 6525 4.722700 TTCCCTGGCCTTCTGCGC 62.723 66.667 3.32 0.00 42.61 6.09
3092 6526 2.747855 GTTCCCTGGCCTTCTGCG 60.748 66.667 3.32 0.00 42.61 5.18
3093 6527 2.747855 CGTTCCCTGGCCTTCTGC 60.748 66.667 3.32 0.00 40.16 4.26
3094 6528 2.747855 GCGTTCCCTGGCCTTCTG 60.748 66.667 3.32 0.00 0.00 3.02
3095 6529 4.035102 GGCGTTCCCTGGCCTTCT 62.035 66.667 3.32 0.00 45.93 2.85
3101 6535 3.058160 CTTGCTGGCGTTCCCTGG 61.058 66.667 0.00 0.00 33.42 4.45
3102 6536 3.741476 GCTTGCTGGCGTTCCCTG 61.741 66.667 0.00 0.00 35.75 4.45
3105 6539 3.064324 ATGGCTTGCTGGCGTTCC 61.064 61.111 0.00 0.00 45.14 3.62
3106 6540 2.180017 CATGGCTTGCTGGCGTTC 59.820 61.111 0.00 0.00 45.14 3.95
3115 6549 4.037208 CCCTATTTACTTCTGCATGGCTTG 59.963 45.833 0.00 0.00 0.00 4.01
3116 6550 4.210331 CCCTATTTACTTCTGCATGGCTT 58.790 43.478 0.00 0.00 0.00 4.35
3117 6551 3.825328 CCCTATTTACTTCTGCATGGCT 58.175 45.455 0.00 0.00 0.00 4.75
3118 6552 2.294512 GCCCTATTTACTTCTGCATGGC 59.705 50.000 0.00 0.00 0.00 4.40
3119 6553 2.887152 GGCCCTATTTACTTCTGCATGG 59.113 50.000 0.00 0.00 0.00 3.66
3120 6554 2.549754 CGGCCCTATTTACTTCTGCATG 59.450 50.000 0.00 0.00 0.00 4.06
3121 6555 2.487265 CCGGCCCTATTTACTTCTGCAT 60.487 50.000 0.00 0.00 0.00 3.96
3122 6556 1.134220 CCGGCCCTATTTACTTCTGCA 60.134 52.381 0.00 0.00 0.00 4.41
3123 6557 1.140252 TCCGGCCCTATTTACTTCTGC 59.860 52.381 0.00 0.00 0.00 4.26
3124 6558 3.203716 GTTCCGGCCCTATTTACTTCTG 58.796 50.000 0.00 0.00 0.00 3.02
3125 6559 2.172082 GGTTCCGGCCCTATTTACTTCT 59.828 50.000 0.00 0.00 0.00 2.85
3126 6560 2.092807 TGGTTCCGGCCCTATTTACTTC 60.093 50.000 10.83 0.00 0.00 3.01
3127 6561 1.917568 TGGTTCCGGCCCTATTTACTT 59.082 47.619 10.83 0.00 0.00 2.24
3128 6562 1.211212 GTGGTTCCGGCCCTATTTACT 59.789 52.381 10.83 0.00 0.00 2.24
3129 6563 1.671979 GTGGTTCCGGCCCTATTTAC 58.328 55.000 10.83 0.00 0.00 2.01
3130 6564 0.547553 GGTGGTTCCGGCCCTATTTA 59.452 55.000 10.83 0.00 0.00 1.40
3131 6565 1.212250 AGGTGGTTCCGGCCCTATTT 61.212 55.000 10.83 0.00 41.99 1.40
3132 6566 1.618447 AGGTGGTTCCGGCCCTATT 60.618 57.895 10.83 0.00 41.99 1.73
3133 6567 2.042261 AGGTGGTTCCGGCCCTAT 59.958 61.111 10.83 0.00 41.99 2.57
3134 6568 2.686106 GAGGTGGTTCCGGCCCTA 60.686 66.667 10.83 0.00 41.99 3.53
3137 6571 3.540367 TTTCGAGGTGGTTCCGGCC 62.540 63.158 0.00 0.00 41.99 6.13
3138 6572 2.031465 TTTCGAGGTGGTTCCGGC 59.969 61.111 0.00 0.00 41.99 6.13
3139 6573 2.033194 GCTTTCGAGGTGGTTCCGG 61.033 63.158 0.00 0.00 41.99 5.14
3140 6574 0.882927 TTGCTTTCGAGGTGGTTCCG 60.883 55.000 0.00 0.00 41.99 4.30
3141 6575 1.200020 CATTGCTTTCGAGGTGGTTCC 59.800 52.381 0.00 0.00 0.00 3.62
3142 6576 1.401539 GCATTGCTTTCGAGGTGGTTC 60.402 52.381 0.16 0.00 0.00 3.62
3143 6577 0.598065 GCATTGCTTTCGAGGTGGTT 59.402 50.000 0.16 0.00 0.00 3.67
3144 6578 0.537143 TGCATTGCTTTCGAGGTGGT 60.537 50.000 10.49 0.00 0.00 4.16
3145 6579 0.813184 ATGCATTGCTTTCGAGGTGG 59.187 50.000 10.49 0.00 0.00 4.61
3146 6580 2.163010 AGAATGCATTGCTTTCGAGGTG 59.837 45.455 18.59 0.00 44.05 4.00
3147 6581 2.440409 AGAATGCATTGCTTTCGAGGT 58.560 42.857 18.59 10.00 44.05 3.85
3148 6582 3.498927 AAGAATGCATTGCTTTCGAGG 57.501 42.857 18.59 0.00 44.05 4.63
3149 6583 4.029861 CGAAAAGAATGCATTGCTTTCGAG 59.970 41.667 34.91 23.36 44.05 4.04
3150 6584 3.913763 CGAAAAGAATGCATTGCTTTCGA 59.086 39.130 34.91 3.00 44.05 3.71
3151 6585 3.480825 GCGAAAAGAATGCATTGCTTTCG 60.481 43.478 34.42 34.42 44.05 3.46
3152 6586 3.676646 AGCGAAAAGAATGCATTGCTTTC 59.323 39.130 24.38 22.89 41.15 2.62
3153 6587 3.430895 CAGCGAAAAGAATGCATTGCTTT 59.569 39.130 18.59 20.36 33.59 3.51
3154 6588 2.991190 CAGCGAAAAGAATGCATTGCTT 59.009 40.909 18.59 16.01 0.00 3.91
3155 6589 2.602878 CAGCGAAAAGAATGCATTGCT 58.397 42.857 18.59 14.96 0.00 3.91
3156 6590 1.060122 GCAGCGAAAAGAATGCATTGC 59.940 47.619 18.59 12.76 38.54 3.56
3157 6591 2.330286 TGCAGCGAAAAGAATGCATTG 58.670 42.857 18.59 1.90 43.34 2.82
3158 6592 2.029649 ACTGCAGCGAAAAGAATGCATT 60.030 40.909 15.27 12.83 46.67 3.56
3159 6593 1.542915 ACTGCAGCGAAAAGAATGCAT 59.457 42.857 15.27 0.00 46.67 3.96
3160 6594 0.953727 ACTGCAGCGAAAAGAATGCA 59.046 45.000 15.27 0.00 45.82 3.96
3161 6595 2.160417 ACTACTGCAGCGAAAAGAATGC 59.840 45.455 15.27 0.00 39.14 3.56
3162 6596 4.627467 AGTACTACTGCAGCGAAAAGAATG 59.373 41.667 15.27 0.00 0.00 2.67
3163 6597 4.822026 AGTACTACTGCAGCGAAAAGAAT 58.178 39.130 15.27 0.00 0.00 2.40
3164 6598 4.252971 AGTACTACTGCAGCGAAAAGAA 57.747 40.909 15.27 0.00 0.00 2.52
3165 6599 3.936372 AGTACTACTGCAGCGAAAAGA 57.064 42.857 15.27 0.00 0.00 2.52
3166 6600 4.734917 AGTAGTACTACTGCAGCGAAAAG 58.265 43.478 30.33 6.36 44.11 2.27
3167 6601 4.778534 AGTAGTACTACTGCAGCGAAAA 57.221 40.909 30.33 0.00 44.11 2.29
3168 6602 5.227238 GTAGTAGTACTACTGCAGCGAAA 57.773 43.478 35.52 17.13 45.70 3.46
3169 6603 4.871993 GTAGTAGTACTACTGCAGCGAA 57.128 45.455 35.52 17.77 45.70 4.70
3180 6614 8.935614 TCATGGCATAACATAGTAGTAGTACT 57.064 34.615 14.57 14.57 42.49 2.73
3186 6620 8.137437 GCAAAAATCATGGCATAACATAGTAGT 58.863 33.333 0.00 0.00 0.00 2.73
3187 6621 8.355169 AGCAAAAATCATGGCATAACATAGTAG 58.645 33.333 0.00 0.00 0.00 2.57
3188 6622 8.136800 CAGCAAAAATCATGGCATAACATAGTA 58.863 33.333 0.00 0.00 0.00 1.82
3189 6623 6.982141 CAGCAAAAATCATGGCATAACATAGT 59.018 34.615 0.00 0.00 0.00 2.12
3190 6624 6.422701 CCAGCAAAAATCATGGCATAACATAG 59.577 38.462 0.00 0.00 0.00 2.23
3191 6625 6.282167 CCAGCAAAAATCATGGCATAACATA 58.718 36.000 0.00 0.00 0.00 2.29
3192 6626 5.120399 CCAGCAAAAATCATGGCATAACAT 58.880 37.500 0.00 0.00 0.00 2.71
3193 6627 4.505808 CCAGCAAAAATCATGGCATAACA 58.494 39.130 0.00 0.00 0.00 2.41
3200 6634 2.745281 CCAAAGCCAGCAAAAATCATGG 59.255 45.455 0.00 0.00 35.84 3.66
3201 6635 3.404899 ACCAAAGCCAGCAAAAATCATG 58.595 40.909 0.00 0.00 0.00 3.07
3202 6636 3.775261 ACCAAAGCCAGCAAAAATCAT 57.225 38.095 0.00 0.00 0.00 2.45
3203 6637 3.118482 TCAACCAAAGCCAGCAAAAATCA 60.118 39.130 0.00 0.00 0.00 2.57
3204 6638 3.465871 TCAACCAAAGCCAGCAAAAATC 58.534 40.909 0.00 0.00 0.00 2.17
3205 6639 3.557228 TCAACCAAAGCCAGCAAAAAT 57.443 38.095 0.00 0.00 0.00 1.82
3206 6640 3.006247 GTTCAACCAAAGCCAGCAAAAA 58.994 40.909 0.00 0.00 0.00 1.94
3207 6641 2.235898 AGTTCAACCAAAGCCAGCAAAA 59.764 40.909 0.00 0.00 0.00 2.44
3208 6642 1.830477 AGTTCAACCAAAGCCAGCAAA 59.170 42.857 0.00 0.00 0.00 3.68
3209 6643 1.484038 AGTTCAACCAAAGCCAGCAA 58.516 45.000 0.00 0.00 0.00 3.91
3210 6644 1.484038 AAGTTCAACCAAAGCCAGCA 58.516 45.000 0.00 0.00 0.00 4.41
3211 6645 2.159114 TCAAAGTTCAACCAAAGCCAGC 60.159 45.455 0.00 0.00 0.00 4.85
3212 6646 3.447742 GTCAAAGTTCAACCAAAGCCAG 58.552 45.455 0.00 0.00 0.00 4.85
3213 6647 2.167487 GGTCAAAGTTCAACCAAAGCCA 59.833 45.455 2.51 0.00 33.11 4.75
3214 6648 2.430694 AGGTCAAAGTTCAACCAAAGCC 59.569 45.455 8.80 0.00 35.43 4.35
3215 6649 3.801114 AGGTCAAAGTTCAACCAAAGC 57.199 42.857 8.80 0.00 35.43 3.51
3216 6650 7.716612 AGATAAAGGTCAAAGTTCAACCAAAG 58.283 34.615 8.80 0.00 35.43 2.77
3217 6651 7.654022 AGATAAAGGTCAAAGTTCAACCAAA 57.346 32.000 8.80 0.00 35.43 3.28
3218 6652 7.559897 AGAAGATAAAGGTCAAAGTTCAACCAA 59.440 33.333 8.80 0.00 35.43 3.67
3219 6653 7.060421 AGAAGATAAAGGTCAAAGTTCAACCA 58.940 34.615 8.80 0.00 35.43 3.67
3220 6654 7.511959 AGAAGATAAAGGTCAAAGTTCAACC 57.488 36.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.