Multiple sequence alignment - TraesCS1D01G006700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G006700 chr1D 100.000 2405 0 0 1 2405 3234708 3232304 0.000000e+00 4442.0
1 TraesCS1D01G006700 chr1D 84.916 179 23 1 1693 1871 176885898 176886072 6.830000e-41 178.0
2 TraesCS1D01G006700 chr6B 91.730 1439 97 6 1 1426 9161658 9160229 0.000000e+00 1978.0
3 TraesCS1D01G006700 chr6B 76.101 159 30 8 2204 2358 345602963 345602809 2.560000e-10 76.8
4 TraesCS1D01G006700 chr4A 93.548 1085 45 8 428 1491 140715637 140716717 0.000000e+00 1592.0
5 TraesCS1D01G006700 chr7D 84.969 1457 192 14 1 1436 290541753 290543203 0.000000e+00 1452.0
6 TraesCS1D01G006700 chr7D 82.237 152 15 9 1339 1490 61753801 61753940 1.170000e-23 121.0
7 TraesCS1D01G006700 chr5A 94.427 951 35 4 552 1490 477717379 477718323 0.000000e+00 1447.0
8 TraesCS1D01G006700 chr7B 84.491 1483 209 14 1 1470 361566222 361567696 0.000000e+00 1445.0
9 TraesCS1D01G006700 chr7B 93.617 705 29 3 616 1308 68756078 68756778 0.000000e+00 1038.0
10 TraesCS1D01G006700 chr7B 86.592 179 20 1 1693 1871 712488285 712488459 6.780000e-46 195.0
11 TraesCS1D01G006700 chr1A 94.510 929 36 2 553 1469 102376210 102377135 0.000000e+00 1419.0
12 TraesCS1D01G006700 chr1A 79.028 391 49 16 1491 1867 6053033 6053404 1.110000e-58 237.0
13 TraesCS1D01G006700 chr7A 83.547 1483 221 13 1 1470 698841147 698839675 0.000000e+00 1365.0
14 TraesCS1D01G006700 chr7A 83.154 1484 227 13 1 1470 698973162 698971688 0.000000e+00 1334.0
15 TraesCS1D01G006700 chr7A 82.997 1188 179 13 1 1173 698752959 698751780 0.000000e+00 1053.0
16 TraesCS1D01G006700 chr7A 96.304 487 18 0 962 1448 567435854 567436340 0.000000e+00 800.0
17 TraesCS1D01G006700 chr2D 90.811 1023 74 7 482 1490 73579728 73580744 0.000000e+00 1351.0
18 TraesCS1D01G006700 chr4D 79.125 1509 277 20 10 1496 127105081 127106573 0.000000e+00 1007.0
19 TraesCS1D01G006700 chr6D 79.607 1373 257 13 42 1398 81587255 81588620 0.000000e+00 963.0
20 TraesCS1D01G006700 chr4B 78.543 1510 285 20 3 1496 191094242 191095728 0.000000e+00 957.0
21 TraesCS1D01G006700 chr1B 79.102 512 61 19 1873 2365 6557815 6558299 6.460000e-81 311.0
22 TraesCS1D01G006700 chr1B 80.876 251 35 7 1487 1725 5702853 5702604 4.080000e-43 185.0
23 TraesCS1D01G006700 chr1B 87.500 160 9 3 1715 1874 6557601 6557749 8.840000e-40 174.0
24 TraesCS1D01G006700 chr5B 87.151 179 19 1 1693 1871 454127454 454127628 1.460000e-47 200.0
25 TraesCS1D01G006700 chr2B 86.034 179 21 1 1693 1871 464084415 464084589 3.160000e-44 189.0
26 TraesCS1D01G006700 chr3B 83.333 120 16 1 1752 1871 545857045 545857160 9.090000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G006700 chr1D 3232304 3234708 2404 True 4442.0 4442 100.000 1 2405 1 chr1D.!!$R1 2404
1 TraesCS1D01G006700 chr6B 9160229 9161658 1429 True 1978.0 1978 91.730 1 1426 1 chr6B.!!$R1 1425
2 TraesCS1D01G006700 chr4A 140715637 140716717 1080 False 1592.0 1592 93.548 428 1491 1 chr4A.!!$F1 1063
3 TraesCS1D01G006700 chr7D 290541753 290543203 1450 False 1452.0 1452 84.969 1 1436 1 chr7D.!!$F2 1435
4 TraesCS1D01G006700 chr5A 477717379 477718323 944 False 1447.0 1447 94.427 552 1490 1 chr5A.!!$F1 938
5 TraesCS1D01G006700 chr7B 361566222 361567696 1474 False 1445.0 1445 84.491 1 1470 1 chr7B.!!$F2 1469
6 TraesCS1D01G006700 chr7B 68756078 68756778 700 False 1038.0 1038 93.617 616 1308 1 chr7B.!!$F1 692
7 TraesCS1D01G006700 chr1A 102376210 102377135 925 False 1419.0 1419 94.510 553 1469 1 chr1A.!!$F2 916
8 TraesCS1D01G006700 chr7A 698839675 698841147 1472 True 1365.0 1365 83.547 1 1470 1 chr7A.!!$R2 1469
9 TraesCS1D01G006700 chr7A 698971688 698973162 1474 True 1334.0 1334 83.154 1 1470 1 chr7A.!!$R3 1469
10 TraesCS1D01G006700 chr7A 698751780 698752959 1179 True 1053.0 1053 82.997 1 1173 1 chr7A.!!$R1 1172
11 TraesCS1D01G006700 chr2D 73579728 73580744 1016 False 1351.0 1351 90.811 482 1490 1 chr2D.!!$F1 1008
12 TraesCS1D01G006700 chr4D 127105081 127106573 1492 False 1007.0 1007 79.125 10 1496 1 chr4D.!!$F1 1486
13 TraesCS1D01G006700 chr6D 81587255 81588620 1365 False 963.0 963 79.607 42 1398 1 chr6D.!!$F1 1356
14 TraesCS1D01G006700 chr4B 191094242 191095728 1486 False 957.0 957 78.543 3 1496 1 chr4B.!!$F1 1493
15 TraesCS1D01G006700 chr1B 6557601 6558299 698 False 242.5 311 83.301 1715 2365 2 chr1B.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 741 0.324738 CCACTGCTCCCTCTGTCCTA 60.325 60.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1692 0.039618 ATGCTTGGGTCGGTGGAATT 59.96 50.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 2.545810 CTATCCTCCTTCCCCCAGATC 58.454 57.143 0.00 0.00 0.00 2.75
171 173 5.488341 TCAGCGCTTTCTAAAATACCTCTT 58.512 37.500 7.50 0.00 0.00 2.85
229 237 2.043227 CTAACCCTCATCTCCTCCACC 58.957 57.143 0.00 0.00 0.00 4.61
241 249 1.686110 CTCCACCCTAGACGCCCTT 60.686 63.158 0.00 0.00 0.00 3.95
266 274 5.334414 GCCACTCACTTTATGTCTGTCTTTG 60.334 44.000 0.00 0.00 0.00 2.77
271 279 4.520492 CACTTTATGTCTGTCTTTGGGCTT 59.480 41.667 0.00 0.00 0.00 4.35
328 336 1.076024 AGATCCTTCTTTTGGGCAGCA 59.924 47.619 0.00 0.00 0.00 4.41
451 461 5.130292 ACAACTGCCTTCTCATGAAATTG 57.870 39.130 0.00 0.00 0.00 2.32
538 548 0.537188 ACTTCACATCTAGGCCACCG 59.463 55.000 5.01 0.00 0.00 4.94
564 582 2.158943 CCCCTACCTCTGGAAAATCGTC 60.159 54.545 0.00 0.00 0.00 4.20
695 719 2.735259 TACCCCCACCTTTTCTCTCT 57.265 50.000 0.00 0.00 0.00 3.10
717 741 0.324738 CCACTGCTCCCTCTGTCCTA 60.325 60.000 0.00 0.00 0.00 2.94
727 751 4.991776 TCCCTCTGTCCTAGTATCTCATG 58.008 47.826 0.00 0.00 0.00 3.07
728 752 4.417183 TCCCTCTGTCCTAGTATCTCATGT 59.583 45.833 0.00 0.00 0.00 3.21
729 753 4.764823 CCCTCTGTCCTAGTATCTCATGTC 59.235 50.000 0.00 0.00 0.00 3.06
944 974 1.164411 CTCAACGCAGGGCACATTTA 58.836 50.000 0.00 0.00 0.00 1.40
1072 1114 4.963318 TGTGACTTGTCTTCTGAGGATT 57.037 40.909 2.35 0.00 0.00 3.01
1232 1275 4.821589 CGCCGTCCTCTGGAAGCC 62.822 72.222 4.85 0.00 31.83 4.35
1311 1355 9.781834 GATACTATTCAGAACATTATCTCCGAG 57.218 37.037 0.00 0.00 0.00 4.63
1390 1434 1.324005 GCGCCTGTACCTCTCCTCTT 61.324 60.000 0.00 0.00 0.00 2.85
1408 1452 7.550551 TCTCCTCTTGCTGTAATCTTTAATGTG 59.449 37.037 0.00 0.00 0.00 3.21
1426 1471 0.106769 TGTTCTGCAACTTGCCCTCA 60.107 50.000 11.29 3.21 44.23 3.86
1511 1556 5.467035 AAAAATGTGCCAAGCTAAGCTAA 57.533 34.783 9.12 0.00 38.25 3.09
1512 1557 4.440839 AAATGTGCCAAGCTAAGCTAAC 57.559 40.909 9.12 1.37 38.25 2.34
1513 1558 1.821216 TGTGCCAAGCTAAGCTAACC 58.179 50.000 9.12 0.00 38.25 2.85
1514 1559 1.073125 TGTGCCAAGCTAAGCTAACCA 59.927 47.619 9.12 0.00 38.25 3.67
1515 1560 2.159382 GTGCCAAGCTAAGCTAACCAA 58.841 47.619 9.12 0.00 38.25 3.67
1516 1561 2.095212 GTGCCAAGCTAAGCTAACCAAC 60.095 50.000 9.12 0.00 38.25 3.77
1517 1562 1.130561 GCCAAGCTAAGCTAACCAACG 59.869 52.381 0.73 0.00 38.25 4.10
1518 1563 1.130561 CCAAGCTAAGCTAACCAACGC 59.869 52.381 0.00 0.00 38.25 4.84
1519 1564 1.804151 CAAGCTAAGCTAACCAACGCA 59.196 47.619 0.00 0.00 38.25 5.24
1520 1565 1.439679 AGCTAAGCTAACCAACGCAC 58.560 50.000 0.00 0.00 36.99 5.34
1521 1566 1.153353 GCTAAGCTAACCAACGCACA 58.847 50.000 0.00 0.00 0.00 4.57
1522 1567 1.533731 GCTAAGCTAACCAACGCACAA 59.466 47.619 0.00 0.00 0.00 3.33
1523 1568 2.412847 GCTAAGCTAACCAACGCACAAG 60.413 50.000 0.00 0.00 0.00 3.16
1524 1569 0.310854 AAGCTAACCAACGCACAAGC 59.689 50.000 0.00 0.00 37.42 4.01
1525 1570 0.817634 AGCTAACCAACGCACAAGCA 60.818 50.000 0.00 0.00 42.27 3.91
1526 1571 0.240945 GCTAACCAACGCACAAGCAT 59.759 50.000 0.00 0.00 42.27 3.79
1527 1572 1.466950 GCTAACCAACGCACAAGCATA 59.533 47.619 0.00 0.00 42.27 3.14
1528 1573 2.095466 GCTAACCAACGCACAAGCATAA 60.095 45.455 0.00 0.00 42.27 1.90
1529 1574 2.704725 AACCAACGCACAAGCATAAG 57.295 45.000 0.00 0.00 42.27 1.73
1530 1575 1.890876 ACCAACGCACAAGCATAAGA 58.109 45.000 0.00 0.00 42.27 2.10
1531 1576 2.226330 ACCAACGCACAAGCATAAGAA 58.774 42.857 0.00 0.00 42.27 2.52
1532 1577 2.031157 ACCAACGCACAAGCATAAGAAC 60.031 45.455 0.00 0.00 42.27 3.01
1533 1578 2.031245 CCAACGCACAAGCATAAGAACA 60.031 45.455 0.00 0.00 42.27 3.18
1534 1579 3.366273 CCAACGCACAAGCATAAGAACAT 60.366 43.478 0.00 0.00 42.27 2.71
1535 1580 3.476295 ACGCACAAGCATAAGAACATG 57.524 42.857 0.00 0.00 42.27 3.21
1548 1593 8.147642 GCATAAGAACATGCTGAAGTATAAGT 57.852 34.615 0.00 0.00 46.35 2.24
1549 1594 9.261180 GCATAAGAACATGCTGAAGTATAAGTA 57.739 33.333 0.00 0.00 46.35 2.24
1551 1596 9.765795 ATAAGAACATGCTGAAGTATAAGTACC 57.234 33.333 0.00 0.00 0.00 3.34
1552 1597 7.182817 AGAACATGCTGAAGTATAAGTACCA 57.817 36.000 0.00 0.00 0.00 3.25
1553 1598 7.268586 AGAACATGCTGAAGTATAAGTACCAG 58.731 38.462 0.00 0.00 0.00 4.00
1554 1599 5.918608 ACATGCTGAAGTATAAGTACCAGG 58.081 41.667 0.00 0.00 0.00 4.45
1555 1600 4.402056 TGCTGAAGTATAAGTACCAGGC 57.598 45.455 0.00 0.00 0.00 4.85
1556 1601 3.772572 TGCTGAAGTATAAGTACCAGGCA 59.227 43.478 0.00 0.00 0.00 4.75
1557 1602 4.408921 TGCTGAAGTATAAGTACCAGGCAT 59.591 41.667 0.00 0.00 0.00 4.40
1558 1603 5.600898 TGCTGAAGTATAAGTACCAGGCATA 59.399 40.000 0.00 0.00 0.00 3.14
1559 1604 5.927115 GCTGAAGTATAAGTACCAGGCATAC 59.073 44.000 0.00 0.00 0.00 2.39
1560 1605 6.462487 GCTGAAGTATAAGTACCAGGCATACA 60.462 42.308 0.00 0.00 0.00 2.29
1561 1606 7.612065 TGAAGTATAAGTACCAGGCATACAT 57.388 36.000 0.00 0.00 0.00 2.29
1562 1607 8.715190 TGAAGTATAAGTACCAGGCATACATA 57.285 34.615 0.00 0.00 0.00 2.29
1563 1608 9.150028 TGAAGTATAAGTACCAGGCATACATAA 57.850 33.333 0.00 0.00 0.00 1.90
1564 1609 9.420551 GAAGTATAAGTACCAGGCATACATAAC 57.579 37.037 0.00 0.00 0.00 1.89
1565 1610 8.486942 AGTATAAGTACCAGGCATACATAACA 57.513 34.615 0.00 0.00 0.00 2.41
1566 1611 9.101325 AGTATAAGTACCAGGCATACATAACAT 57.899 33.333 0.00 0.00 0.00 2.71
1567 1612 9.720769 GTATAAGTACCAGGCATACATAACATT 57.279 33.333 0.00 0.00 0.00 2.71
1568 1613 6.942532 AAGTACCAGGCATACATAACATTG 57.057 37.500 0.00 0.00 0.00 2.82
1569 1614 6.001449 AGTACCAGGCATACATAACATTGT 57.999 37.500 0.00 0.00 0.00 2.71
1570 1615 5.822519 AGTACCAGGCATACATAACATTGTG 59.177 40.000 0.00 0.00 0.00 3.33
1571 1616 4.854173 ACCAGGCATACATAACATTGTGA 58.146 39.130 0.00 0.00 0.00 3.58
1572 1617 5.260424 ACCAGGCATACATAACATTGTGAA 58.740 37.500 0.00 0.00 0.00 3.18
1573 1618 5.125417 ACCAGGCATACATAACATTGTGAAC 59.875 40.000 0.00 0.00 0.00 3.18
1574 1619 5.125257 CCAGGCATACATAACATTGTGAACA 59.875 40.000 0.00 0.00 0.00 3.18
1575 1620 6.260377 CAGGCATACATAACATTGTGAACAG 58.740 40.000 0.00 0.00 0.00 3.16
1576 1621 5.357878 AGGCATACATAACATTGTGAACAGG 59.642 40.000 0.00 0.00 0.00 4.00
1577 1622 5.356751 GGCATACATAACATTGTGAACAGGA 59.643 40.000 0.00 0.00 0.00 3.86
1578 1623 6.039717 GGCATACATAACATTGTGAACAGGAT 59.960 38.462 0.00 0.00 0.00 3.24
1579 1624 7.134815 GCATACATAACATTGTGAACAGGATC 58.865 38.462 0.00 0.00 0.00 3.36
1580 1625 7.012704 GCATACATAACATTGTGAACAGGATCT 59.987 37.037 0.00 0.00 0.00 2.75
1581 1626 9.546428 CATACATAACATTGTGAACAGGATCTA 57.454 33.333 0.00 0.00 0.00 1.98
1583 1628 8.862325 ACATAACATTGTGAACAGGATCTAAA 57.138 30.769 0.00 0.00 0.00 1.85
1584 1629 9.295825 ACATAACATTGTGAACAGGATCTAAAA 57.704 29.630 0.00 0.00 0.00 1.52
1587 1632 8.408043 AACATTGTGAACAGGATCTAAAATGA 57.592 30.769 0.00 0.00 0.00 2.57
1588 1633 8.408043 ACATTGTGAACAGGATCTAAAATGAA 57.592 30.769 0.00 0.00 0.00 2.57
1589 1634 9.028284 ACATTGTGAACAGGATCTAAAATGAAT 57.972 29.630 0.00 0.00 0.00 2.57
1590 1635 9.297586 CATTGTGAACAGGATCTAAAATGAATG 57.702 33.333 0.00 0.00 0.00 2.67
1591 1636 8.408043 TTGTGAACAGGATCTAAAATGAATGT 57.592 30.769 0.00 0.00 0.00 2.71
1592 1637 8.408043 TGTGAACAGGATCTAAAATGAATGTT 57.592 30.769 0.00 0.00 32.67 2.71
1593 1638 8.514594 TGTGAACAGGATCTAAAATGAATGTTC 58.485 33.333 7.58 7.58 43.37 3.18
1594 1639 8.734386 GTGAACAGGATCTAAAATGAATGTTCT 58.266 33.333 13.81 0.00 43.43 3.01
1595 1640 8.733458 TGAACAGGATCTAAAATGAATGTTCTG 58.267 33.333 13.81 0.00 43.43 3.02
1596 1641 7.636150 ACAGGATCTAAAATGAATGTTCTGG 57.364 36.000 0.00 0.00 0.00 3.86
1597 1642 6.604795 ACAGGATCTAAAATGAATGTTCTGGG 59.395 38.462 0.00 0.00 0.00 4.45
1598 1643 6.604795 CAGGATCTAAAATGAATGTTCTGGGT 59.395 38.462 0.00 0.00 0.00 4.51
1599 1644 7.123247 CAGGATCTAAAATGAATGTTCTGGGTT 59.877 37.037 0.00 0.00 0.00 4.11
1600 1645 7.675619 AGGATCTAAAATGAATGTTCTGGGTTT 59.324 33.333 0.00 0.00 0.00 3.27
1601 1646 8.314021 GGATCTAAAATGAATGTTCTGGGTTTT 58.686 33.333 0.00 0.00 0.00 2.43
1629 1674 9.853921 AAAAATAACTAACAAAACTCGTACTCG 57.146 29.630 0.00 0.00 38.55 4.18
1630 1675 8.801715 AAATAACTAACAAAACTCGTACTCGA 57.198 30.769 0.00 0.00 44.12 4.04
1660 1705 6.519679 AATTAAAGTTAATTCCACCGACCC 57.480 37.500 3.66 0.00 38.59 4.46
1661 1706 3.512219 AAAGTTAATTCCACCGACCCA 57.488 42.857 0.00 0.00 0.00 4.51
1662 1707 3.512219 AAGTTAATTCCACCGACCCAA 57.488 42.857 0.00 0.00 0.00 4.12
1663 1708 3.067684 AGTTAATTCCACCGACCCAAG 57.932 47.619 0.00 0.00 0.00 3.61
1664 1709 1.471287 GTTAATTCCACCGACCCAAGC 59.529 52.381 0.00 0.00 0.00 4.01
1665 1710 0.693622 TAATTCCACCGACCCAAGCA 59.306 50.000 0.00 0.00 0.00 3.91
1666 1711 0.039618 AATTCCACCGACCCAAGCAT 59.960 50.000 0.00 0.00 0.00 3.79
1667 1712 0.680921 ATTCCACCGACCCAAGCATG 60.681 55.000 0.00 0.00 0.00 4.06
1668 1713 3.443045 CCACCGACCCAAGCATGC 61.443 66.667 10.51 10.51 0.00 4.06
1669 1714 2.672651 CACCGACCCAAGCATGCA 60.673 61.111 21.98 0.00 0.00 3.96
1670 1715 2.048023 CACCGACCCAAGCATGCAT 61.048 57.895 21.98 4.57 0.00 3.96
1671 1716 2.048023 ACCGACCCAAGCATGCATG 61.048 57.895 22.70 22.70 0.00 4.06
1672 1717 2.048023 CCGACCCAAGCATGCATGT 61.048 57.895 26.79 10.73 0.00 3.21
1673 1718 0.747644 CCGACCCAAGCATGCATGTA 60.748 55.000 26.79 0.00 0.00 2.29
1674 1719 0.378257 CGACCCAAGCATGCATGTAC 59.622 55.000 26.79 12.06 0.00 2.90
1675 1720 1.462616 GACCCAAGCATGCATGTACA 58.537 50.000 26.79 0.00 0.00 2.90
1676 1721 1.402968 GACCCAAGCATGCATGTACAG 59.597 52.381 26.79 14.72 0.00 2.74
1677 1722 1.004628 ACCCAAGCATGCATGTACAGA 59.995 47.619 26.79 0.00 0.00 3.41
1678 1723 1.674441 CCCAAGCATGCATGTACAGAG 59.326 52.381 26.79 11.59 0.00 3.35
1679 1724 2.635714 CCAAGCATGCATGTACAGAGA 58.364 47.619 26.79 0.00 0.00 3.10
1680 1725 3.011818 CCAAGCATGCATGTACAGAGAA 58.988 45.455 26.79 0.00 0.00 2.87
1681 1726 3.441222 CCAAGCATGCATGTACAGAGAAA 59.559 43.478 26.79 0.00 0.00 2.52
1682 1727 4.409570 CAAGCATGCATGTACAGAGAAAC 58.590 43.478 26.79 7.00 0.00 2.78
1683 1728 3.012518 AGCATGCATGTACAGAGAAACC 58.987 45.455 26.79 6.50 0.00 3.27
1684 1729 3.012518 GCATGCATGTACAGAGAAACCT 58.987 45.455 26.79 0.00 0.00 3.50
1685 1730 3.064545 GCATGCATGTACAGAGAAACCTC 59.935 47.826 26.79 2.16 0.00 3.85
1686 1731 3.334583 TGCATGTACAGAGAAACCTCC 57.665 47.619 0.33 0.00 0.00 4.30
1687 1732 2.637382 TGCATGTACAGAGAAACCTCCA 59.363 45.455 0.33 0.00 0.00 3.86
1688 1733 3.072330 TGCATGTACAGAGAAACCTCCAA 59.928 43.478 0.33 0.00 0.00 3.53
1689 1734 4.263462 TGCATGTACAGAGAAACCTCCAAT 60.263 41.667 0.33 0.00 0.00 3.16
1690 1735 5.045942 TGCATGTACAGAGAAACCTCCAATA 60.046 40.000 0.33 0.00 0.00 1.90
1691 1736 5.880332 GCATGTACAGAGAAACCTCCAATAA 59.120 40.000 0.33 0.00 0.00 1.40
1692 1737 6.543831 GCATGTACAGAGAAACCTCCAATAAT 59.456 38.462 0.33 0.00 0.00 1.28
1693 1738 7.715249 GCATGTACAGAGAAACCTCCAATAATA 59.285 37.037 0.33 0.00 0.00 0.98
1694 1739 9.613428 CATGTACAGAGAAACCTCCAATAATAA 57.387 33.333 0.33 0.00 0.00 1.40
1695 1740 9.614792 ATGTACAGAGAAACCTCCAATAATAAC 57.385 33.333 0.33 0.00 0.00 1.89
1696 1741 8.822805 TGTACAGAGAAACCTCCAATAATAACT 58.177 33.333 0.00 0.00 0.00 2.24
1697 1742 9.668497 GTACAGAGAAACCTCCAATAATAACTT 57.332 33.333 0.00 0.00 0.00 2.66
1698 1743 8.567285 ACAGAGAAACCTCCAATAATAACTTG 57.433 34.615 0.00 0.00 0.00 3.16
1699 1744 8.164070 ACAGAGAAACCTCCAATAATAACTTGT 58.836 33.333 0.00 0.00 0.00 3.16
1700 1745 9.667107 CAGAGAAACCTCCAATAATAACTTGTA 57.333 33.333 0.00 0.00 0.00 2.41
1701 1746 9.668497 AGAGAAACCTCCAATAATAACTTGTAC 57.332 33.333 0.00 0.00 0.00 2.90
1702 1747 9.444600 GAGAAACCTCCAATAATAACTTGTACA 57.555 33.333 0.00 0.00 0.00 2.90
1703 1748 9.227777 AGAAACCTCCAATAATAACTTGTACAC 57.772 33.333 0.00 0.00 0.00 2.90
1704 1749 8.927675 AAACCTCCAATAATAACTTGTACACA 57.072 30.769 0.00 0.00 0.00 3.72
1705 1750 9.528489 AAACCTCCAATAATAACTTGTACACAT 57.472 29.630 0.00 0.00 0.00 3.21
1706 1751 8.506168 ACCTCCAATAATAACTTGTACACATG 57.494 34.615 0.00 0.00 0.00 3.21
1707 1752 8.325787 ACCTCCAATAATAACTTGTACACATGA 58.674 33.333 0.00 0.00 0.00 3.07
1708 1753 8.830580 CCTCCAATAATAACTTGTACACATGAG 58.169 37.037 0.00 0.00 0.00 2.90
1709 1754 8.208718 TCCAATAATAACTTGTACACATGAGC 57.791 34.615 0.00 0.00 0.00 4.26
1710 1755 7.826744 TCCAATAATAACTTGTACACATGAGCA 59.173 33.333 0.00 0.00 0.00 4.26
1711 1756 8.623903 CCAATAATAACTTGTACACATGAGCAT 58.376 33.333 0.00 0.00 0.00 3.79
1712 1757 9.442033 CAATAATAACTTGTACACATGAGCATG 57.558 33.333 8.82 8.82 44.15 4.06
1713 1758 8.962884 ATAATAACTTGTACACATGAGCATGA 57.037 30.769 16.70 0.00 41.20 3.07
1732 1777 5.277876 GCATGAGATTGAGATTTGCCTACTG 60.278 44.000 0.00 0.00 0.00 2.74
1739 1784 6.360370 TTGAGATTTGCCTACTGTAAGAGT 57.640 37.500 0.00 0.00 37.43 3.24
1740 1785 7.476540 TTGAGATTTGCCTACTGTAAGAGTA 57.523 36.000 0.00 0.00 37.43 2.59
1764 1809 6.077993 AGGAGCATACATGACTTAGGACATA 58.922 40.000 0.00 0.00 0.00 2.29
1773 1818 6.381420 ACATGACTTAGGACATACACTTAGCT 59.619 38.462 0.00 0.00 0.00 3.32
1777 1822 3.810310 AGGACATACACTTAGCTGAGC 57.190 47.619 5.23 0.00 0.00 4.26
1779 1824 3.131933 AGGACATACACTTAGCTGAGCAG 59.868 47.826 7.39 0.00 0.00 4.24
1844 1889 7.774134 TGCGAAGTAATGTATACTAGGAACAA 58.226 34.615 4.17 0.00 0.00 2.83
1874 1919 2.356069 TGTCATGCAAAACAGTACGCAA 59.644 40.909 0.00 0.00 38.01 4.85
1875 1920 2.973224 GTCATGCAAAACAGTACGCAAG 59.027 45.455 0.00 0.00 38.01 4.01
1935 2049 5.063180 TCCAACAAAGCACATGATTCATC 57.937 39.130 0.00 0.00 0.00 2.92
1937 2051 4.862574 CCAACAAAGCACATGATTCATCTG 59.137 41.667 0.00 0.00 0.00 2.90
1939 2053 6.330278 CAACAAAGCACATGATTCATCTGAT 58.670 36.000 0.00 0.00 0.00 2.90
1940 2054 5.891451 ACAAAGCACATGATTCATCTGATG 58.109 37.500 11.42 11.42 0.00 3.07
1945 2074 7.260558 AGCACATGATTCATCTGATGTTAAG 57.739 36.000 16.66 6.75 0.00 1.85
1951 2080 8.496751 CATGATTCATCTGATGTTAAGTAGCTG 58.503 37.037 16.66 2.43 0.00 4.24
1960 2089 7.122204 TCTGATGTTAAGTAGCTGCTAGTACAA 59.878 37.037 18.83 13.07 0.00 2.41
1979 2108 8.709386 AGTACAAGCATTATACAGAGAAACAG 57.291 34.615 0.00 0.00 0.00 3.16
2000 2129 1.452108 CTCTCGGGTGGCCATTTCC 60.452 63.158 9.72 10.81 0.00 3.13
2013 2142 2.048603 ATTTCCGGCAGCAGCTTCC 61.049 57.895 0.00 0.00 41.70 3.46
2060 2190 4.379499 GGAGCATTACAACTTGTTGCTACC 60.379 45.833 17.34 15.75 42.52 3.18
2063 2193 2.536761 TACAACTTGTTGCTACCGCT 57.463 45.000 12.76 0.00 36.97 5.52
2076 2206 2.197577 CTACCGCTAGCAAAAGCTCTC 58.802 52.381 16.45 0.00 40.49 3.20
2089 2219 3.842007 AAGCTCTCAATCCTCCATCTG 57.158 47.619 0.00 0.00 0.00 2.90
2096 2226 1.404391 CAATCCTCCATCTGTTGCAGC 59.596 52.381 0.00 0.00 0.00 5.25
2102 2232 2.030371 TCCATCTGTTGCAGCAAACAA 58.970 42.857 10.11 0.00 39.47 2.83
2126 2256 1.738099 CTGCAGCCAGTCGGTACAC 60.738 63.158 0.00 0.00 34.31 2.90
2130 2260 0.317160 CAGCCAGTCGGTACACAAGA 59.683 55.000 0.00 0.00 33.28 3.02
2134 2264 1.732259 CCAGTCGGTACACAAGAATGC 59.268 52.381 0.00 0.00 0.00 3.56
2140 2270 1.470098 GGTACACAAGAATGCAGCCTG 59.530 52.381 0.00 0.00 0.00 4.85
2141 2271 1.135575 GTACACAAGAATGCAGCCTGC 60.136 52.381 10.45 10.45 45.29 4.85
2168 2298 7.155328 GCTAATAGAGCCATTAGAGTGCTTAA 58.845 38.462 12.26 0.00 46.41 1.85
2169 2299 7.821846 GCTAATAGAGCCATTAGAGTGCTTAAT 59.178 37.037 12.26 0.00 46.41 1.40
2172 2302 9.717942 AATAGAGCCATTAGAGTGCTTAATAAG 57.282 33.333 0.00 0.00 34.99 1.73
2174 2304 6.100424 AGAGCCATTAGAGTGCTTAATAAGGT 59.900 38.462 1.88 0.00 34.99 3.50
2176 2306 5.239525 GCCATTAGAGTGCTTAATAAGGTGG 59.760 44.000 1.88 0.00 0.00 4.61
2177 2307 6.591935 CCATTAGAGTGCTTAATAAGGTGGA 58.408 40.000 1.88 0.00 0.00 4.02
2178 2308 6.483640 CCATTAGAGTGCTTAATAAGGTGGAC 59.516 42.308 1.88 0.00 0.00 4.02
2179 2309 6.614694 TTAGAGTGCTTAATAAGGTGGACA 57.385 37.500 1.88 0.00 0.00 4.02
2180 2310 5.700402 AGAGTGCTTAATAAGGTGGACAT 57.300 39.130 1.88 0.00 0.00 3.06
2181 2311 6.808321 AGAGTGCTTAATAAGGTGGACATA 57.192 37.500 1.88 0.00 0.00 2.29
2182 2312 7.380423 AGAGTGCTTAATAAGGTGGACATAT 57.620 36.000 1.88 0.00 0.00 1.78
2183 2313 7.806180 AGAGTGCTTAATAAGGTGGACATATT 58.194 34.615 1.88 0.00 0.00 1.28
2184 2314 8.934697 AGAGTGCTTAATAAGGTGGACATATTA 58.065 33.333 1.88 0.00 0.00 0.98
2185 2315 9.726438 GAGTGCTTAATAAGGTGGACATATTAT 57.274 33.333 1.88 0.00 0.00 1.28
2188 2318 8.792633 TGCTTAATAAGGTGGACATATTATTGC 58.207 33.333 1.88 9.26 31.93 3.56
2189 2319 9.014297 GCTTAATAAGGTGGACATATTATTGCT 57.986 33.333 1.88 0.00 31.93 3.91
2194 2324 7.765695 AAGGTGGACATATTATTGCTTATGG 57.234 36.000 0.00 0.00 31.46 2.74
2195 2325 6.248433 AGGTGGACATATTATTGCTTATGGG 58.752 40.000 0.00 0.00 31.46 4.00
2196 2326 5.105756 GGTGGACATATTATTGCTTATGGGC 60.106 44.000 0.00 0.00 31.46 5.36
2197 2327 5.476599 GTGGACATATTATTGCTTATGGGCA 59.523 40.000 0.00 0.00 40.74 5.36
2211 2341 2.380410 GGGCAAGTACTCGCACACG 61.380 63.158 8.31 0.00 42.01 4.49
2223 2353 0.862490 CGCACACGAACATGTTACCA 59.138 50.000 11.95 0.00 43.93 3.25
2237 2367 0.538118 TTACCATGTACCCCTGCGTC 59.462 55.000 0.00 0.00 0.00 5.19
2238 2368 0.615261 TACCATGTACCCCTGCGTCA 60.615 55.000 0.00 0.00 0.00 4.35
2239 2369 1.298340 CCATGTACCCCTGCGTCAA 59.702 57.895 0.00 0.00 0.00 3.18
2253 2383 1.550065 CGTCAAGCGAGATACACAGG 58.450 55.000 0.00 0.00 44.77 4.00
2254 2384 1.132453 CGTCAAGCGAGATACACAGGA 59.868 52.381 0.00 0.00 44.77 3.86
2257 2387 2.094700 TCAAGCGAGATACACAGGACAC 60.095 50.000 0.00 0.00 0.00 3.67
2262 2392 0.170561 AGATACACAGGACACGTCGC 59.829 55.000 0.00 0.00 0.00 5.19
2264 2394 2.537792 ATACACAGGACACGTCGCCG 62.538 60.000 0.00 0.00 40.83 6.46
2290 2420 1.065928 CTCGCCGGGAGTGTGATAC 59.934 63.158 2.18 0.00 38.02 2.24
2297 2427 1.202417 CGGGAGTGTGATACGCAAGAT 60.202 52.381 0.00 0.00 43.62 2.40
2304 2434 0.382873 TGATACGCAAGATACGCCGT 59.617 50.000 0.00 0.00 43.62 5.68
2318 2448 1.344942 CGCCGTCGAGGTCTTTTGAG 61.345 60.000 4.18 0.00 43.70 3.02
2321 2451 1.669211 CCGTCGAGGTCTTTTGAGGAC 60.669 57.143 4.18 0.00 34.51 3.85
2329 2459 3.035363 GGTCTTTTGAGGACCCCAAAAA 58.965 45.455 14.10 6.02 45.31 1.94
2342 2472 1.005156 CAAAAACCCACATGCCCGG 60.005 57.895 0.00 0.00 0.00 5.73
2350 2480 3.083997 ACATGCCCGGGAGAGACC 61.084 66.667 29.31 5.43 38.08 3.85
2365 2495 3.343788 GACCCCGTCAGAGAGTGCG 62.344 68.421 0.00 0.00 32.09 5.34
2366 2496 3.374402 CCCCGTCAGAGAGTGCGT 61.374 66.667 0.00 0.00 0.00 5.24
2367 2497 2.651361 CCCGTCAGAGAGTGCGTT 59.349 61.111 0.00 0.00 0.00 4.84
2368 2498 1.592400 CCCCGTCAGAGAGTGCGTTA 61.592 60.000 0.00 0.00 0.00 3.18
2369 2499 0.179161 CCCGTCAGAGAGTGCGTTAG 60.179 60.000 0.00 0.00 0.00 2.34
2370 2500 0.803117 CCGTCAGAGAGTGCGTTAGA 59.197 55.000 0.00 0.00 0.00 2.10
2371 2501 1.199327 CCGTCAGAGAGTGCGTTAGAA 59.801 52.381 0.00 0.00 0.00 2.10
2372 2502 2.351447 CCGTCAGAGAGTGCGTTAGAAA 60.351 50.000 0.00 0.00 0.00 2.52
2373 2503 3.305964 CGTCAGAGAGTGCGTTAGAAAA 58.694 45.455 0.00 0.00 0.00 2.29
2374 2504 3.362237 CGTCAGAGAGTGCGTTAGAAAAG 59.638 47.826 0.00 0.00 0.00 2.27
2375 2505 3.675698 GTCAGAGAGTGCGTTAGAAAAGG 59.324 47.826 0.00 0.00 0.00 3.11
2376 2506 3.572682 TCAGAGAGTGCGTTAGAAAAGGA 59.427 43.478 0.00 0.00 0.00 3.36
2377 2507 3.923461 CAGAGAGTGCGTTAGAAAAGGAG 59.077 47.826 0.00 0.00 0.00 3.69
2378 2508 3.056465 AGAGAGTGCGTTAGAAAAGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
2379 2509 2.897969 AGAGTGCGTTAGAAAAGGAGGA 59.102 45.455 0.00 0.00 0.00 3.71
2380 2510 3.515901 AGAGTGCGTTAGAAAAGGAGGAT 59.484 43.478 0.00 0.00 0.00 3.24
2381 2511 3.600388 AGTGCGTTAGAAAAGGAGGATG 58.400 45.455 0.00 0.00 0.00 3.51
2382 2512 3.008049 AGTGCGTTAGAAAAGGAGGATGT 59.992 43.478 0.00 0.00 0.00 3.06
2383 2513 4.222145 AGTGCGTTAGAAAAGGAGGATGTA 59.778 41.667 0.00 0.00 0.00 2.29
2384 2514 4.329256 GTGCGTTAGAAAAGGAGGATGTAC 59.671 45.833 0.00 0.00 0.00 2.90
2385 2515 3.869832 GCGTTAGAAAAGGAGGATGTACC 59.130 47.826 0.00 0.00 39.35 3.34
2386 2516 4.439968 CGTTAGAAAAGGAGGATGTACCC 58.560 47.826 0.00 0.00 40.05 3.69
2387 2517 4.682589 CGTTAGAAAAGGAGGATGTACCCC 60.683 50.000 0.00 0.00 40.05 4.95
2388 2518 2.206223 AGAAAAGGAGGATGTACCCCC 58.794 52.381 0.00 0.00 40.05 5.40
2389 2519 0.916809 AAAAGGAGGATGTACCCCCG 59.083 55.000 0.00 0.00 40.05 5.73
2390 2520 1.632965 AAAGGAGGATGTACCCCCGC 61.633 60.000 0.00 0.00 40.05 6.13
2391 2521 3.557290 GGAGGATGTACCCCCGCC 61.557 72.222 7.46 7.46 40.05 6.13
2392 2522 3.557290 GAGGATGTACCCCCGCCC 61.557 72.222 0.00 0.00 40.05 6.13
2393 2523 4.103928 AGGATGTACCCCCGCCCT 62.104 66.667 0.00 0.00 40.05 5.19
2394 2524 3.557290 GGATGTACCCCCGCCCTC 61.557 72.222 0.00 0.00 0.00 4.30
2395 2525 2.446036 GATGTACCCCCGCCCTCT 60.446 66.667 0.00 0.00 0.00 3.69
2396 2526 2.768344 ATGTACCCCCGCCCTCTG 60.768 66.667 0.00 0.00 0.00 3.35
2397 2527 3.635869 ATGTACCCCCGCCCTCTGT 62.636 63.158 0.00 0.00 0.00 3.41
2398 2528 2.042639 GTACCCCCGCCCTCTGTA 60.043 66.667 0.00 0.00 0.00 2.74
2399 2529 1.458967 GTACCCCCGCCCTCTGTAT 60.459 63.158 0.00 0.00 0.00 2.29
2400 2530 1.152398 TACCCCCGCCCTCTGTATC 60.152 63.158 0.00 0.00 0.00 2.24
2401 2531 1.661990 TACCCCCGCCCTCTGTATCT 61.662 60.000 0.00 0.00 0.00 1.98
2402 2532 2.511452 CCCCCGCCCTCTGTATCTG 61.511 68.421 0.00 0.00 0.00 2.90
2403 2533 2.511452 CCCCGCCCTCTGTATCTGG 61.511 68.421 0.00 0.00 0.00 3.86
2404 2534 1.457643 CCCGCCCTCTGTATCTGGA 60.458 63.158 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 129 0.111446 TGATGGGTTCAAAGGCCGAA 59.889 50.000 0.00 0.00 0.00 4.30
171 173 4.966787 GTTTGGCTGCCCACCCGA 62.967 66.667 17.53 0.00 41.97 5.14
229 237 2.125106 GTGGCAAGGGCGTCTAGG 60.125 66.667 0.00 0.00 42.47 3.02
241 249 3.324846 AGACAGACATAAAGTGAGTGGCA 59.675 43.478 0.00 0.00 0.00 4.92
266 274 2.505819 TGATAGTCTTCTTGGGAAGCCC 59.494 50.000 0.00 0.00 46.12 5.19
271 279 6.688073 AGTCTTTTGATAGTCTTCTTGGGA 57.312 37.500 0.00 0.00 0.00 4.37
328 336 1.767759 CCCCGGAGCAATTTTCATCT 58.232 50.000 0.73 0.00 0.00 2.90
451 461 4.570772 GGTTTTTGAAGAAGTTTGAAGGCC 59.429 41.667 0.00 0.00 0.00 5.19
564 582 3.350219 AGGTGGTATAGCTGTTGGTTG 57.650 47.619 0.00 0.00 35.38 3.77
695 719 0.613292 GACAGAGGGAGCAGTGGAGA 60.613 60.000 0.00 0.00 0.00 3.71
727 751 5.556382 CGAGTAAACCATTATGCATGACGAC 60.556 44.000 10.16 0.00 34.31 4.34
728 752 4.506288 CGAGTAAACCATTATGCATGACGA 59.494 41.667 10.16 0.00 34.31 4.20
729 753 4.761745 CGAGTAAACCATTATGCATGACG 58.238 43.478 10.16 0.00 34.31 4.35
987 1029 1.067416 CGCCATCGTGCTTAGCCTA 59.933 57.895 0.29 0.00 0.00 3.93
1247 1290 2.017783 TTACGGAACACACGAGCGC 61.018 57.895 0.00 0.00 34.93 5.92
1311 1355 1.264288 CTGAAGGACCAAAGCGTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
1390 1434 6.206438 TGCAGAACACATTAAAGATTACAGCA 59.794 34.615 0.00 0.00 0.00 4.41
1426 1471 7.147302 ACCTGAATATATTACTCAAAGGTGCCT 60.147 37.037 0.00 0.00 0.00 4.75
1491 1536 3.193479 GGTTAGCTTAGCTTGGCACATTT 59.807 43.478 13.44 0.00 40.44 2.32
1496 1541 2.159382 GTTGGTTAGCTTAGCTTGGCA 58.841 47.619 13.44 0.00 40.44 4.92
1497 1542 1.130561 CGTTGGTTAGCTTAGCTTGGC 59.869 52.381 13.44 2.92 40.44 4.52
1498 1543 1.130561 GCGTTGGTTAGCTTAGCTTGG 59.869 52.381 13.44 0.00 40.44 3.61
1499 1544 1.804151 TGCGTTGGTTAGCTTAGCTTG 59.196 47.619 13.44 0.00 40.44 4.01
1500 1545 1.804748 GTGCGTTGGTTAGCTTAGCTT 59.195 47.619 13.44 0.00 40.44 3.74
1501 1546 1.270625 TGTGCGTTGGTTAGCTTAGCT 60.271 47.619 12.67 12.67 43.41 3.32
1502 1547 1.153353 TGTGCGTTGGTTAGCTTAGC 58.847 50.000 0.00 0.00 0.00 3.09
1503 1548 2.412847 GCTTGTGCGTTGGTTAGCTTAG 60.413 50.000 0.00 0.00 0.00 2.18
1504 1549 1.533731 GCTTGTGCGTTGGTTAGCTTA 59.466 47.619 0.00 0.00 0.00 3.09
1505 1550 0.310854 GCTTGTGCGTTGGTTAGCTT 59.689 50.000 0.00 0.00 0.00 3.74
1506 1551 0.817634 TGCTTGTGCGTTGGTTAGCT 60.818 50.000 0.00 0.00 43.34 3.32
1507 1552 0.240945 ATGCTTGTGCGTTGGTTAGC 59.759 50.000 0.00 0.00 43.34 3.09
1508 1553 3.435327 TCTTATGCTTGTGCGTTGGTTAG 59.565 43.478 0.00 0.00 43.34 2.34
1509 1554 3.403968 TCTTATGCTTGTGCGTTGGTTA 58.596 40.909 0.00 0.00 43.34 2.85
1510 1555 2.226330 TCTTATGCTTGTGCGTTGGTT 58.774 42.857 0.00 0.00 43.34 3.67
1511 1556 1.890876 TCTTATGCTTGTGCGTTGGT 58.109 45.000 0.00 0.00 43.34 3.67
1512 1557 2.031245 TGTTCTTATGCTTGTGCGTTGG 60.031 45.455 0.00 0.00 43.34 3.77
1513 1558 3.266541 TGTTCTTATGCTTGTGCGTTG 57.733 42.857 0.00 0.00 43.34 4.10
1514 1559 3.825308 CATGTTCTTATGCTTGTGCGTT 58.175 40.909 0.00 0.00 43.34 4.84
1515 1560 3.476295 CATGTTCTTATGCTTGTGCGT 57.524 42.857 0.00 0.00 43.34 5.24
1525 1570 9.765795 GGTACTTATACTTCAGCATGTTCTTAT 57.234 33.333 0.00 0.00 37.40 1.73
1526 1571 8.755028 TGGTACTTATACTTCAGCATGTTCTTA 58.245 33.333 0.00 0.00 37.40 2.10
1527 1572 7.620880 TGGTACTTATACTTCAGCATGTTCTT 58.379 34.615 0.00 0.00 37.40 2.52
1528 1573 7.182817 TGGTACTTATACTTCAGCATGTTCT 57.817 36.000 0.00 0.00 37.40 3.01
1529 1574 6.480320 CCTGGTACTTATACTTCAGCATGTTC 59.520 42.308 0.00 0.00 37.40 3.18
1530 1575 6.349300 CCTGGTACTTATACTTCAGCATGTT 58.651 40.000 0.00 0.00 37.40 2.71
1531 1576 5.685075 GCCTGGTACTTATACTTCAGCATGT 60.685 44.000 0.00 0.00 37.40 3.21
1532 1577 4.752101 GCCTGGTACTTATACTTCAGCATG 59.248 45.833 0.00 0.00 37.54 4.06
1533 1578 4.408921 TGCCTGGTACTTATACTTCAGCAT 59.591 41.667 0.00 0.00 0.00 3.79
1534 1579 3.772572 TGCCTGGTACTTATACTTCAGCA 59.227 43.478 0.00 0.00 0.00 4.41
1535 1580 4.402056 TGCCTGGTACTTATACTTCAGC 57.598 45.455 0.00 0.00 0.00 4.26
1536 1581 7.050970 TGTATGCCTGGTACTTATACTTCAG 57.949 40.000 0.00 0.00 0.00 3.02
1537 1582 7.612065 ATGTATGCCTGGTACTTATACTTCA 57.388 36.000 0.00 0.00 0.00 3.02
1538 1583 9.420551 GTTATGTATGCCTGGTACTTATACTTC 57.579 37.037 0.00 0.00 0.00 3.01
1539 1584 8.930527 TGTTATGTATGCCTGGTACTTATACTT 58.069 33.333 0.00 0.00 0.00 2.24
1540 1585 8.486942 TGTTATGTATGCCTGGTACTTATACT 57.513 34.615 0.00 0.00 0.00 2.12
1541 1586 9.720769 AATGTTATGTATGCCTGGTACTTATAC 57.279 33.333 0.00 0.00 0.00 1.47
1542 1587 9.719355 CAATGTTATGTATGCCTGGTACTTATA 57.281 33.333 0.00 0.00 0.00 0.98
1543 1588 8.217799 ACAATGTTATGTATGCCTGGTACTTAT 58.782 33.333 0.00 0.00 0.00 1.73
1544 1589 7.497579 CACAATGTTATGTATGCCTGGTACTTA 59.502 37.037 0.00 0.00 30.84 2.24
1545 1590 6.318648 CACAATGTTATGTATGCCTGGTACTT 59.681 38.462 0.00 0.00 30.84 2.24
1546 1591 5.822519 CACAATGTTATGTATGCCTGGTACT 59.177 40.000 0.00 0.00 30.84 2.73
1547 1592 5.820423 TCACAATGTTATGTATGCCTGGTAC 59.180 40.000 0.00 0.00 30.84 3.34
1548 1593 5.995446 TCACAATGTTATGTATGCCTGGTA 58.005 37.500 0.00 0.00 30.84 3.25
1549 1594 4.854173 TCACAATGTTATGTATGCCTGGT 58.146 39.130 0.00 0.00 30.84 4.00
1550 1595 5.125257 TGTTCACAATGTTATGTATGCCTGG 59.875 40.000 0.00 0.00 30.84 4.45
1551 1596 6.193514 TGTTCACAATGTTATGTATGCCTG 57.806 37.500 0.00 0.00 30.84 4.85
1552 1597 5.357878 CCTGTTCACAATGTTATGTATGCCT 59.642 40.000 0.00 0.00 30.84 4.75
1553 1598 5.356751 TCCTGTTCACAATGTTATGTATGCC 59.643 40.000 0.00 0.00 30.84 4.40
1554 1599 6.435430 TCCTGTTCACAATGTTATGTATGC 57.565 37.500 0.00 0.00 30.84 3.14
1555 1600 8.442632 AGATCCTGTTCACAATGTTATGTATG 57.557 34.615 0.00 0.00 30.84 2.39
1557 1602 9.952030 TTTAGATCCTGTTCACAATGTTATGTA 57.048 29.630 0.00 0.00 30.84 2.29
1558 1603 8.862325 TTTAGATCCTGTTCACAATGTTATGT 57.138 30.769 0.00 0.00 0.00 2.29
1561 1606 9.513906 TCATTTTAGATCCTGTTCACAATGTTA 57.486 29.630 0.00 0.00 0.00 2.41
1562 1607 8.408043 TCATTTTAGATCCTGTTCACAATGTT 57.592 30.769 0.00 0.00 0.00 2.71
1563 1608 8.408043 TTCATTTTAGATCCTGTTCACAATGT 57.592 30.769 0.00 0.00 0.00 2.71
1564 1609 9.297586 CATTCATTTTAGATCCTGTTCACAATG 57.702 33.333 0.00 0.00 0.00 2.82
1565 1610 9.028284 ACATTCATTTTAGATCCTGTTCACAAT 57.972 29.630 0.00 0.00 0.00 2.71
1566 1611 8.408043 ACATTCATTTTAGATCCTGTTCACAA 57.592 30.769 0.00 0.00 0.00 3.33
1567 1612 8.408043 AACATTCATTTTAGATCCTGTTCACA 57.592 30.769 0.00 0.00 0.00 3.58
1568 1613 8.734386 AGAACATTCATTTTAGATCCTGTTCAC 58.266 33.333 12.83 0.00 42.13 3.18
1569 1614 8.733458 CAGAACATTCATTTTAGATCCTGTTCA 58.267 33.333 12.83 0.00 42.13 3.18
1570 1615 8.186821 CCAGAACATTCATTTTAGATCCTGTTC 58.813 37.037 0.00 0.00 40.77 3.18
1571 1616 7.123247 CCCAGAACATTCATTTTAGATCCTGTT 59.877 37.037 0.00 0.00 0.00 3.16
1572 1617 6.604795 CCCAGAACATTCATTTTAGATCCTGT 59.395 38.462 0.00 0.00 0.00 4.00
1573 1618 6.604795 ACCCAGAACATTCATTTTAGATCCTG 59.395 38.462 0.00 0.00 0.00 3.86
1574 1619 6.735556 ACCCAGAACATTCATTTTAGATCCT 58.264 36.000 0.00 0.00 0.00 3.24
1575 1620 7.410120 AACCCAGAACATTCATTTTAGATCC 57.590 36.000 0.00 0.00 0.00 3.36
1603 1648 9.853921 CGAGTACGAGTTTTGTTAGTTATTTTT 57.146 29.630 0.00 0.00 42.66 1.94
1604 1649 9.248291 TCGAGTACGAGTTTTGTTAGTTATTTT 57.752 29.630 0.00 0.00 43.81 1.82
1605 1650 8.801715 TCGAGTACGAGTTTTGTTAGTTATTT 57.198 30.769 0.00 0.00 43.81 1.40
1634 1679 8.689061 GGGTCGGTGGAATTAACTTTAATTAAT 58.311 33.333 6.89 0.00 41.88 1.40
1635 1680 7.668886 TGGGTCGGTGGAATTAACTTTAATTAA 59.331 33.333 6.89 0.00 41.88 1.40
1636 1681 7.173722 TGGGTCGGTGGAATTAACTTTAATTA 58.826 34.615 6.89 0.00 41.88 1.40
1637 1682 6.011481 TGGGTCGGTGGAATTAACTTTAATT 58.989 36.000 6.66 6.66 43.83 1.40
1638 1683 5.572252 TGGGTCGGTGGAATTAACTTTAAT 58.428 37.500 0.00 0.00 34.98 1.40
1639 1684 4.983053 TGGGTCGGTGGAATTAACTTTAA 58.017 39.130 0.00 0.00 0.00 1.52
1640 1685 4.637387 TGGGTCGGTGGAATTAACTTTA 57.363 40.909 0.00 0.00 0.00 1.85
1641 1686 3.512219 TGGGTCGGTGGAATTAACTTT 57.488 42.857 0.00 0.00 0.00 2.66
1642 1687 3.418047 CTTGGGTCGGTGGAATTAACTT 58.582 45.455 0.00 0.00 0.00 2.66
1643 1688 2.878526 GCTTGGGTCGGTGGAATTAACT 60.879 50.000 0.00 0.00 0.00 2.24
1644 1689 1.471287 GCTTGGGTCGGTGGAATTAAC 59.529 52.381 0.00 0.00 0.00 2.01
1645 1690 1.074084 TGCTTGGGTCGGTGGAATTAA 59.926 47.619 0.00 0.00 0.00 1.40
1646 1691 0.693622 TGCTTGGGTCGGTGGAATTA 59.306 50.000 0.00 0.00 0.00 1.40
1647 1692 0.039618 ATGCTTGGGTCGGTGGAATT 59.960 50.000 0.00 0.00 0.00 2.17
1648 1693 0.680921 CATGCTTGGGTCGGTGGAAT 60.681 55.000 0.00 0.00 0.00 3.01
1649 1694 1.303236 CATGCTTGGGTCGGTGGAA 60.303 57.895 0.00 0.00 0.00 3.53
1650 1695 2.350895 CATGCTTGGGTCGGTGGA 59.649 61.111 0.00 0.00 0.00 4.02
1651 1696 3.443045 GCATGCTTGGGTCGGTGG 61.443 66.667 11.37 0.00 0.00 4.61
1652 1697 2.048023 ATGCATGCTTGGGTCGGTG 61.048 57.895 20.33 0.00 0.00 4.94
1653 1698 2.048023 CATGCATGCTTGGGTCGGT 61.048 57.895 22.49 0.00 0.00 4.69
1654 1699 0.747644 TACATGCATGCTTGGGTCGG 60.748 55.000 30.33 10.75 0.00 4.79
1655 1700 0.378257 GTACATGCATGCTTGGGTCG 59.622 55.000 30.33 11.38 0.00 4.79
1656 1701 1.402968 CTGTACATGCATGCTTGGGTC 59.597 52.381 30.33 21.19 0.00 4.46
1657 1702 1.004628 TCTGTACATGCATGCTTGGGT 59.995 47.619 30.33 19.46 0.00 4.51
1658 1703 1.674441 CTCTGTACATGCATGCTTGGG 59.326 52.381 30.33 19.23 0.00 4.12
1659 1704 2.635714 TCTCTGTACATGCATGCTTGG 58.364 47.619 30.33 17.57 0.00 3.61
1660 1705 4.409570 GTTTCTCTGTACATGCATGCTTG 58.590 43.478 26.53 26.93 0.00 4.01
1661 1706 3.441572 GGTTTCTCTGTACATGCATGCTT 59.558 43.478 26.53 10.16 0.00 3.91
1662 1707 3.012518 GGTTTCTCTGTACATGCATGCT 58.987 45.455 26.53 15.56 0.00 3.79
1663 1708 3.012518 AGGTTTCTCTGTACATGCATGC 58.987 45.455 26.53 11.82 0.00 4.06
1664 1709 3.624861 GGAGGTTTCTCTGTACATGCATG 59.375 47.826 25.09 25.09 39.86 4.06
1665 1710 3.264193 TGGAGGTTTCTCTGTACATGCAT 59.736 43.478 0.00 0.00 39.86 3.96
1666 1711 2.637382 TGGAGGTTTCTCTGTACATGCA 59.363 45.455 0.00 0.00 39.86 3.96
1667 1712 3.334583 TGGAGGTTTCTCTGTACATGC 57.665 47.619 0.00 0.00 39.86 4.06
1668 1713 9.613428 TTATTATTGGAGGTTTCTCTGTACATG 57.387 33.333 0.00 0.00 39.86 3.21
1669 1714 9.614792 GTTATTATTGGAGGTTTCTCTGTACAT 57.385 33.333 0.00 0.00 39.86 2.29
1670 1715 8.822805 AGTTATTATTGGAGGTTTCTCTGTACA 58.177 33.333 0.00 0.00 39.86 2.90
1671 1716 9.668497 AAGTTATTATTGGAGGTTTCTCTGTAC 57.332 33.333 0.00 0.00 39.86 2.90
1672 1717 9.667107 CAAGTTATTATTGGAGGTTTCTCTGTA 57.333 33.333 0.00 0.00 39.86 2.74
1673 1718 8.164070 ACAAGTTATTATTGGAGGTTTCTCTGT 58.836 33.333 0.00 0.00 39.86 3.41
1674 1719 8.567285 ACAAGTTATTATTGGAGGTTTCTCTG 57.433 34.615 0.00 0.00 39.86 3.35
1675 1720 9.668497 GTACAAGTTATTATTGGAGGTTTCTCT 57.332 33.333 0.00 0.00 39.86 3.10
1676 1721 9.444600 TGTACAAGTTATTATTGGAGGTTTCTC 57.555 33.333 0.00 0.00 39.25 2.87
1677 1722 9.227777 GTGTACAAGTTATTATTGGAGGTTTCT 57.772 33.333 0.00 0.00 31.76 2.52
1678 1723 9.005777 TGTGTACAAGTTATTATTGGAGGTTTC 57.994 33.333 0.00 0.00 31.76 2.78
1679 1724 8.927675 TGTGTACAAGTTATTATTGGAGGTTT 57.072 30.769 0.00 0.00 31.76 3.27
1680 1725 8.956426 CATGTGTACAAGTTATTATTGGAGGTT 58.044 33.333 0.00 0.00 31.76 3.50
1681 1726 8.325787 TCATGTGTACAAGTTATTATTGGAGGT 58.674 33.333 0.00 0.00 31.76 3.85
1682 1727 8.731275 TCATGTGTACAAGTTATTATTGGAGG 57.269 34.615 0.00 0.00 31.76 4.30
1683 1728 8.338259 GCTCATGTGTACAAGTTATTATTGGAG 58.662 37.037 0.00 0.00 31.76 3.86
1684 1729 7.826744 TGCTCATGTGTACAAGTTATTATTGGA 59.173 33.333 0.00 0.00 31.76 3.53
1685 1730 7.984391 TGCTCATGTGTACAAGTTATTATTGG 58.016 34.615 0.00 0.00 31.76 3.16
1686 1731 9.442033 CATGCTCATGTGTACAAGTTATTATTG 57.558 33.333 0.00 0.00 34.23 1.90
1687 1732 9.394767 TCATGCTCATGTGTACAAGTTATTATT 57.605 29.630 0.00 0.00 39.72 1.40
1688 1733 8.962884 TCATGCTCATGTGTACAAGTTATTAT 57.037 30.769 0.00 0.00 39.72 1.28
1689 1734 8.257306 TCTCATGCTCATGTGTACAAGTTATTA 58.743 33.333 0.00 0.00 39.72 0.98
1690 1735 7.105588 TCTCATGCTCATGTGTACAAGTTATT 58.894 34.615 0.00 0.00 39.72 1.40
1691 1736 6.643388 TCTCATGCTCATGTGTACAAGTTAT 58.357 36.000 0.00 0.00 39.72 1.89
1692 1737 6.036577 TCTCATGCTCATGTGTACAAGTTA 57.963 37.500 0.00 0.00 39.72 2.24
1693 1738 4.898320 TCTCATGCTCATGTGTACAAGTT 58.102 39.130 0.00 0.00 39.72 2.66
1694 1739 4.541973 TCTCATGCTCATGTGTACAAGT 57.458 40.909 0.00 0.00 39.72 3.16
1695 1740 5.583457 TCAATCTCATGCTCATGTGTACAAG 59.417 40.000 0.00 0.00 39.72 3.16
1696 1741 5.490159 TCAATCTCATGCTCATGTGTACAA 58.510 37.500 0.00 0.00 39.72 2.41
1697 1742 5.088680 TCAATCTCATGCTCATGTGTACA 57.911 39.130 9.41 0.00 39.72 2.90
1698 1743 5.354767 TCTCAATCTCATGCTCATGTGTAC 58.645 41.667 9.41 0.00 39.72 2.90
1699 1744 5.603170 TCTCAATCTCATGCTCATGTGTA 57.397 39.130 9.41 0.00 39.72 2.90
1700 1745 4.482952 TCTCAATCTCATGCTCATGTGT 57.517 40.909 9.41 0.00 39.72 3.72
1701 1746 6.202226 CAAATCTCAATCTCATGCTCATGTG 58.798 40.000 9.41 7.51 39.72 3.21
1702 1747 5.221067 GCAAATCTCAATCTCATGCTCATGT 60.221 40.000 9.41 0.00 39.72 3.21
1703 1748 5.215903 GCAAATCTCAATCTCATGCTCATG 58.784 41.667 3.55 3.55 40.09 3.07
1704 1749 4.278669 GGCAAATCTCAATCTCATGCTCAT 59.721 41.667 0.00 0.00 33.09 2.90
1705 1750 3.630769 GGCAAATCTCAATCTCATGCTCA 59.369 43.478 0.00 0.00 33.09 4.26
1706 1751 3.884091 AGGCAAATCTCAATCTCATGCTC 59.116 43.478 0.00 0.00 33.09 4.26
1707 1752 3.899726 AGGCAAATCTCAATCTCATGCT 58.100 40.909 0.00 0.00 33.09 3.79
1708 1753 4.820716 AGTAGGCAAATCTCAATCTCATGC 59.179 41.667 0.00 0.00 0.00 4.06
1709 1754 5.821470 ACAGTAGGCAAATCTCAATCTCATG 59.179 40.000 0.00 0.00 0.00 3.07
1710 1755 5.999044 ACAGTAGGCAAATCTCAATCTCAT 58.001 37.500 0.00 0.00 0.00 2.90
1711 1756 5.426689 ACAGTAGGCAAATCTCAATCTCA 57.573 39.130 0.00 0.00 0.00 3.27
1712 1757 7.268586 TCTTACAGTAGGCAAATCTCAATCTC 58.731 38.462 0.00 0.00 0.00 2.75
1713 1758 7.093112 ACTCTTACAGTAGGCAAATCTCAATCT 60.093 37.037 0.00 0.00 31.37 2.40
1732 1777 6.642707 AGTCATGTATGCTCCTACTCTTAC 57.357 41.667 0.00 0.00 0.00 2.34
1739 1784 5.454966 TGTCCTAAGTCATGTATGCTCCTA 58.545 41.667 0.00 0.00 0.00 2.94
1740 1785 4.290093 TGTCCTAAGTCATGTATGCTCCT 58.710 43.478 0.00 0.00 0.00 3.69
1741 1786 4.672587 TGTCCTAAGTCATGTATGCTCC 57.327 45.455 0.00 0.00 0.00 4.70
1742 1787 6.642950 GTGTATGTCCTAAGTCATGTATGCTC 59.357 42.308 0.00 0.00 0.00 4.26
1743 1788 6.325028 AGTGTATGTCCTAAGTCATGTATGCT 59.675 38.462 0.00 0.00 0.00 3.79
1744 1789 6.516718 AGTGTATGTCCTAAGTCATGTATGC 58.483 40.000 0.00 0.00 0.00 3.14
1773 1818 6.350110 GGTTCTTTATTTAACCATGCTGCTCA 60.350 38.462 0.00 0.00 43.84 4.26
1787 1832 8.184192 CGTGCTAATCTGATTGGTTCTTTATTT 58.816 33.333 13.01 0.00 0.00 1.40
1788 1833 7.679638 GCGTGCTAATCTGATTGGTTCTTTATT 60.680 37.037 13.01 0.00 0.00 1.40
1789 1834 6.238484 GCGTGCTAATCTGATTGGTTCTTTAT 60.238 38.462 13.01 0.00 0.00 1.40
1844 1889 5.010314 ACTGTTTTGCATGACATGAGTTGAT 59.990 36.000 19.76 0.00 0.00 2.57
1874 1919 2.434336 TGTACTCTGTGAACCAGCAACT 59.566 45.455 0.00 0.00 41.25 3.16
1875 1920 2.833794 TGTACTCTGTGAACCAGCAAC 58.166 47.619 0.00 0.00 41.25 4.17
1876 1921 3.769739 ATGTACTCTGTGAACCAGCAA 57.230 42.857 0.00 0.00 41.25 3.91
1880 1925 4.591498 ACCACTTATGTACTCTGTGAACCA 59.409 41.667 0.00 0.00 0.00 3.67
1881 1926 5.148651 ACCACTTATGTACTCTGTGAACC 57.851 43.478 0.00 0.00 0.00 3.62
1883 1928 8.205512 TGTTTAACCACTTATGTACTCTGTGAA 58.794 33.333 0.00 0.00 0.00 3.18
1884 1929 7.728148 TGTTTAACCACTTATGTACTCTGTGA 58.272 34.615 0.00 0.00 0.00 3.58
1891 2005 6.428771 TGGAAGCTGTTTAACCACTTATGTAC 59.571 38.462 0.00 0.00 0.00 2.90
1896 2010 5.194432 TGTTGGAAGCTGTTTAACCACTTA 58.806 37.500 0.00 0.00 0.00 2.24
1925 2039 8.496751 CAGCTACTTAACATCAGATGAATCATG 58.503 37.037 17.81 4.73 0.00 3.07
1928 2042 6.705381 AGCAGCTACTTAACATCAGATGAATC 59.295 38.462 17.81 0.00 0.00 2.52
1935 2049 6.796426 TGTACTAGCAGCTACTTAACATCAG 58.204 40.000 0.00 0.00 0.00 2.90
1937 2051 6.199342 GCTTGTACTAGCAGCTACTTAACATC 59.801 42.308 22.06 0.00 40.89 3.06
1939 2053 5.047590 TGCTTGTACTAGCAGCTACTTAACA 60.048 40.000 25.07 1.16 45.72 2.41
1940 2054 5.408356 TGCTTGTACTAGCAGCTACTTAAC 58.592 41.667 25.07 0.00 45.72 2.01
1951 2080 8.756864 GTTTCTCTGTATAATGCTTGTACTAGC 58.243 37.037 20.53 20.53 41.59 3.42
1960 2089 3.557595 GCGCTGTTTCTCTGTATAATGCT 59.442 43.478 0.00 0.00 0.00 3.79
1996 2125 2.672996 GGAAGCTGCTGCCGGAAA 60.673 61.111 11.76 0.00 40.80 3.13
2021 2150 2.978010 CCAAAAGTCCGCCGCTGT 60.978 61.111 0.00 0.00 0.00 4.40
2025 2154 1.586154 AATGCTCCAAAAGTCCGCCG 61.586 55.000 0.00 0.00 0.00 6.46
2027 2156 1.810151 TGTAATGCTCCAAAAGTCCGC 59.190 47.619 0.00 0.00 0.00 5.54
2029 2158 5.221244 ACAAGTTGTAATGCTCCAAAAGTCC 60.221 40.000 6.75 0.00 0.00 3.85
2076 2206 1.404391 GCTGCAACAGATGGAGGATTG 59.596 52.381 1.30 0.00 46.76 2.67
2089 2219 0.913876 GTCACGTTGTTTGCTGCAAC 59.086 50.000 15.72 10.84 41.81 4.17
2096 2226 0.592247 GGCTGCAGTCACGTTGTTTG 60.592 55.000 14.88 0.00 0.00 2.93
2120 2250 1.470098 CAGGCTGCATTCTTGTGTACC 59.530 52.381 0.00 0.00 0.00 3.34
2121 2251 1.135575 GCAGGCTGCATTCTTGTGTAC 60.136 52.381 33.33 0.00 44.26 2.90
2148 2278 7.290248 ACCTTATTAAGCACTCTAATGGCTCTA 59.710 37.037 0.00 0.00 36.76 2.43
2168 2298 9.466497 CCATAAGCAATAATATGTCCACCTTAT 57.534 33.333 0.00 0.00 0.00 1.73
2169 2299 7.888021 CCCATAAGCAATAATATGTCCACCTTA 59.112 37.037 0.00 0.00 0.00 2.69
2171 2301 6.248433 CCCATAAGCAATAATATGTCCACCT 58.752 40.000 0.00 0.00 0.00 4.00
2172 2302 5.105756 GCCCATAAGCAATAATATGTCCACC 60.106 44.000 0.00 0.00 0.00 4.61
2174 2304 5.639139 TGCCCATAAGCAATAATATGTCCA 58.361 37.500 0.00 0.00 40.56 4.02
2186 2316 1.742411 GCGAGTACTTGCCCATAAGCA 60.742 52.381 22.65 0.00 42.17 3.91
2187 2317 0.938008 GCGAGTACTTGCCCATAAGC 59.062 55.000 22.65 2.41 33.90 3.09
2188 2318 1.933853 GTGCGAGTACTTGCCCATAAG 59.066 52.381 28.47 0.44 39.22 1.73
2189 2319 1.276705 TGTGCGAGTACTTGCCCATAA 59.723 47.619 28.47 10.00 39.22 1.90
2190 2320 0.899019 TGTGCGAGTACTTGCCCATA 59.101 50.000 28.47 10.37 39.22 2.74
2191 2321 0.673644 GTGTGCGAGTACTTGCCCAT 60.674 55.000 28.47 0.00 39.22 4.00
2192 2322 1.301401 GTGTGCGAGTACTTGCCCA 60.301 57.895 28.47 22.28 39.22 5.36
2193 2323 2.380410 CGTGTGCGAGTACTTGCCC 61.380 63.158 28.47 19.97 41.33 5.36
2194 2324 1.372499 TCGTGTGCGAGTACTTGCC 60.372 57.895 28.47 20.46 42.81 4.52
2195 2325 4.238385 TCGTGTGCGAGTACTTGC 57.762 55.556 25.70 25.70 42.81 4.01
2200 2330 6.571574 TGGTAACATGTTCGTGTGCGAGTA 62.572 45.833 15.85 0.00 45.92 2.59
2201 2331 5.894015 TGGTAACATGTTCGTGTGCGAGT 62.894 47.826 15.85 0.00 45.92 4.18
2219 2349 0.615261 TGACGCAGGGGTACATGGTA 60.615 55.000 0.00 0.00 0.00 3.25
2223 2353 1.078426 GCTTGACGCAGGGGTACAT 60.078 57.895 0.00 0.00 38.92 2.29
2237 2367 2.263077 GTGTCCTGTGTATCTCGCTTG 58.737 52.381 0.00 0.00 0.00 4.01
2238 2368 1.135373 CGTGTCCTGTGTATCTCGCTT 60.135 52.381 0.00 0.00 0.00 4.68
2239 2369 0.452184 CGTGTCCTGTGTATCTCGCT 59.548 55.000 0.00 0.00 0.00 4.93
2242 2372 1.794437 GCGACGTGTCCTGTGTATCTC 60.794 57.143 0.00 0.00 0.00 2.75
2243 2373 0.170561 GCGACGTGTCCTGTGTATCT 59.829 55.000 0.00 0.00 0.00 1.98
2244 2374 0.801067 GGCGACGTGTCCTGTGTATC 60.801 60.000 0.00 0.00 0.00 2.24
2271 2401 2.782222 TATCACACTCCCGGCGAGC 61.782 63.158 9.30 0.00 43.01 5.03
2283 2413 1.847818 GGCGTATCTTGCGTATCACA 58.152 50.000 0.00 0.00 0.00 3.58
2290 2420 2.277692 TCGACGGCGTATCTTGCG 60.278 61.111 14.74 11.77 38.98 4.85
2295 2425 0.100146 AAAGACCTCGACGGCGTATC 59.900 55.000 14.74 7.04 38.98 2.24
2297 2427 0.387622 CAAAAGACCTCGACGGCGTA 60.388 55.000 14.74 0.00 38.98 4.42
2318 2448 0.684535 CATGTGGGTTTTTGGGGTCC 59.315 55.000 0.00 0.00 0.00 4.46
2321 2451 1.374568 GGCATGTGGGTTTTTGGGG 59.625 57.895 0.00 0.00 0.00 4.96
2324 2454 1.005156 CCGGGCATGTGGGTTTTTG 60.005 57.895 0.00 0.00 0.00 2.44
2325 2455 2.213513 CCCGGGCATGTGGGTTTTT 61.214 57.895 8.08 0.00 40.76 1.94
2342 2472 0.750182 CTCTCTGACGGGGTCTCTCC 60.750 65.000 0.00 0.00 33.15 3.71
2346 2476 1.979693 GCACTCTCTGACGGGGTCT 60.980 63.158 0.00 0.00 33.15 3.85
2350 2480 0.179161 CTAACGCACTCTCTGACGGG 60.179 60.000 0.00 0.00 0.00 5.28
2351 2481 0.803117 TCTAACGCACTCTCTGACGG 59.197 55.000 0.00 0.00 0.00 4.79
2358 2488 2.897969 TCCTCCTTTTCTAACGCACTCT 59.102 45.455 0.00 0.00 0.00 3.24
2365 2495 4.778579 GGGGTACATCCTCCTTTTCTAAC 58.221 47.826 0.00 0.00 36.25 2.34
2375 2505 3.557290 GGGCGGGGGTACATCCTC 61.557 72.222 0.00 0.00 36.25 3.71
2376 2506 4.103928 AGGGCGGGGGTACATCCT 62.104 66.667 0.00 0.00 36.25 3.24
2377 2507 3.557290 GAGGGCGGGGGTACATCC 61.557 72.222 0.00 0.00 0.00 3.51
2378 2508 2.446036 AGAGGGCGGGGGTACATC 60.446 66.667 0.00 0.00 0.00 3.06
2379 2509 2.246513 TACAGAGGGCGGGGGTACAT 62.247 60.000 0.00 0.00 0.00 2.29
2380 2510 2.246513 ATACAGAGGGCGGGGGTACA 62.247 60.000 0.00 0.00 0.00 2.90
2381 2511 1.458967 ATACAGAGGGCGGGGGTAC 60.459 63.158 0.00 0.00 0.00 3.34
2382 2512 1.152398 GATACAGAGGGCGGGGGTA 60.152 63.158 0.00 0.00 0.00 3.69
2383 2513 2.446036 GATACAGAGGGCGGGGGT 60.446 66.667 0.00 0.00 0.00 4.95
2384 2514 2.122813 AGATACAGAGGGCGGGGG 60.123 66.667 0.00 0.00 0.00 5.40
2385 2515 2.511452 CCAGATACAGAGGGCGGGG 61.511 68.421 0.00 0.00 0.00 5.73
2386 2516 1.457643 TCCAGATACAGAGGGCGGG 60.458 63.158 0.00 0.00 0.00 6.13
2387 2517 4.277552 TCCAGATACAGAGGGCGG 57.722 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.