Multiple sequence alignment - TraesCS1D01G004400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G004400 chr1D 100.000 4551 0 0 1 4551 2117012 2112462 0.000000e+00 8405.0
1 TraesCS1D01G004400 chr1A 87.976 3127 204 71 976 4031 1212769 1209744 0.000000e+00 3533.0
2 TraesCS1D01G004400 chr1A 90.823 316 22 4 4191 4500 1209483 1209169 2.530000e-112 416.0
3 TraesCS1D01G004400 chr1A 85.119 168 16 5 641 803 1213107 1212944 3.640000e-36 163.0
4 TraesCS1D01G004400 chr1A 88.889 81 9 0 555 635 213252965 213253045 2.900000e-17 100.0
5 TraesCS1D01G004400 chr1B 87.418 1828 141 52 2727 4500 1420578 1418786 0.000000e+00 2019.0
6 TraesCS1D01G004400 chr1B 86.900 1229 99 33 1406 2609 1421807 1420616 0.000000e+00 1321.0
7 TraesCS1D01G004400 chr1B 81.851 551 43 21 1 521 1423283 1422760 1.180000e-110 411.0
8 TraesCS1D01G004400 chr1B 89.362 94 6 2 700 789 1422389 1422296 1.030000e-21 115.0
9 TraesCS1D01G004400 chr1B 92.105 76 6 0 446 521 1489515 1489590 1.730000e-19 108.0
10 TraesCS1D01G004400 chr1B 88.095 84 8 1 555 636 665087519 665087436 1.040000e-16 99.0
11 TraesCS1D01G004400 chr1B 91.304 69 5 1 653 720 1489702 1489770 4.850000e-15 93.5
12 TraesCS1D01G004400 chr5B 91.358 81 7 0 556 636 592820846 592820926 1.340000e-20 111.0
13 TraesCS1D01G004400 chr5B 91.358 81 7 0 555 635 596909729 596909649 1.340000e-20 111.0
14 TraesCS1D01G004400 chr2B 90.123 81 8 0 555 635 470523915 470523835 6.230000e-19 106.0
15 TraesCS1D01G004400 chr3D 90.000 80 8 0 556 635 141747897 141747976 2.240000e-18 104.0
16 TraesCS1D01G004400 chr7B 89.024 82 9 0 555 636 233348163 233348244 8.050000e-18 102.0
17 TraesCS1D01G004400 chr7A 88.889 81 9 0 555 635 645072630 645072550 2.900000e-17 100.0
18 TraesCS1D01G004400 chr4D 88.889 81 9 0 555 635 81988203 81988123 2.900000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G004400 chr1D 2112462 2117012 4550 True 8405.000000 8405 100.000000 1 4551 1 chr1D.!!$R1 4550
1 TraesCS1D01G004400 chr1A 1209169 1213107 3938 True 1370.666667 3533 87.972667 641 4500 3 chr1A.!!$R1 3859
2 TraesCS1D01G004400 chr1B 1418786 1423283 4497 True 966.500000 2019 86.382750 1 4500 4 chr1B.!!$R2 4499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 402 0.044161 GTGACGCCGATCGATTTTCG 60.044 55.0 18.66 13.38 41.67 3.46 F
1258 1573 0.038744 ATACAGGGTTGCTTGCTGCT 59.961 50.0 0.00 0.00 43.37 4.24 F
1589 1923 0.104356 TCCCACCTAACCCCTGTTCA 60.104 55.0 0.00 0.00 35.87 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2284 0.473755 ATGAAGCGGTGGCCATATGA 59.526 50.000 9.72 0.00 41.24 2.15 R
3101 3483 0.719465 GCACAACGTTGGTAGATCCG 59.281 55.000 30.34 10.21 39.52 4.18 R
3566 3953 1.003580 TGAGACCACCATCTTTCTGGC 59.996 52.381 0.00 0.00 40.15 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.375173 TAGCTACGAGATCCGCGATA 57.625 50.000 8.23 0.00 43.32 2.92
80 81 7.351981 GCGATAAATATACACAGTTCATTGCA 58.648 34.615 0.00 0.00 0.00 4.08
91 92 7.711846 ACACAGTTCATTGCAAGTACAAAATA 58.288 30.769 4.94 0.00 32.27 1.40
122 123 3.999046 ACTAAACTAAACTGGTGACCCG 58.001 45.455 0.00 0.00 0.00 5.28
123 124 2.265589 AAACTAAACTGGTGACCCGG 57.734 50.000 0.00 0.00 43.41 5.73
124 125 0.250597 AACTAAACTGGTGACCCGGC 60.251 55.000 0.00 0.00 41.25 6.13
125 126 1.376812 CTAAACTGGTGACCCGGCC 60.377 63.158 0.00 0.00 41.25 6.13
126 127 3.242897 TAAACTGGTGACCCGGCCG 62.243 63.158 21.04 21.04 41.25 6.13
135 136 1.256361 TGACCCGGCCGTGTGTAATA 61.256 55.000 20.76 2.62 0.00 0.98
174 175 5.716703 TGACTAGTGGAAGAGAATGTCATGA 59.283 40.000 0.00 0.00 0.00 3.07
183 184 7.225341 TGGAAGAGAATGTCATGAATAATCACG 59.775 37.037 0.00 0.00 38.69 4.35
187 188 7.765819 AGAGAATGTCATGAATAATCACGTTCA 59.234 33.333 13.00 0.00 38.69 3.18
206 207 1.401905 CACGTGTGATCGAGATGGAGA 59.598 52.381 7.58 0.00 34.70 3.71
207 208 2.033927 CACGTGTGATCGAGATGGAGAT 59.966 50.000 7.58 0.00 34.70 2.75
208 209 2.033927 ACGTGTGATCGAGATGGAGATG 59.966 50.000 0.00 0.00 34.70 2.90
209 210 2.402305 GTGTGATCGAGATGGAGATGC 58.598 52.381 0.00 0.00 0.00 3.91
210 211 2.034124 TGTGATCGAGATGGAGATGCA 58.966 47.619 0.00 0.00 0.00 3.96
211 212 2.631545 TGTGATCGAGATGGAGATGCAT 59.368 45.455 0.00 0.00 0.00 3.96
239 240 6.805271 GCATATGCATGAATTGACCAATACTC 59.195 38.462 22.84 0.00 41.59 2.59
240 241 4.880886 TGCATGAATTGACCAATACTCG 57.119 40.909 0.00 0.00 0.00 4.18
241 242 4.260985 TGCATGAATTGACCAATACTCGT 58.739 39.130 0.00 0.00 0.00 4.18
242 243 4.699735 TGCATGAATTGACCAATACTCGTT 59.300 37.500 0.00 0.00 0.00 3.85
243 244 5.030295 GCATGAATTGACCAATACTCGTTG 58.970 41.667 0.00 0.00 0.00 4.10
244 245 5.391950 GCATGAATTGACCAATACTCGTTGT 60.392 40.000 0.00 0.00 0.00 3.32
245 246 5.856126 TGAATTGACCAATACTCGTTGTC 57.144 39.130 0.00 0.00 0.00 3.18
263 264 1.938577 GTCGCTGACTGGTCGACTATA 59.061 52.381 16.46 1.54 46.21 1.31
265 266 1.264557 CGCTGACTGGTCGACTATAGG 59.735 57.143 16.46 0.00 0.00 2.57
270 271 0.674534 CTGGTCGACTATAGGTGGCC 59.325 60.000 16.46 9.52 0.00 5.36
271 272 0.260816 TGGTCGACTATAGGTGGCCT 59.739 55.000 16.46 0.00 37.71 5.19
272 273 1.496001 TGGTCGACTATAGGTGGCCTA 59.504 52.381 16.46 0.00 40.71 3.93
273 274 2.091720 TGGTCGACTATAGGTGGCCTAA 60.092 50.000 16.46 0.00 39.77 2.69
275 276 2.954318 GTCGACTATAGGTGGCCTAACA 59.046 50.000 8.70 0.00 39.77 2.41
277 278 4.038883 GTCGACTATAGGTGGCCTAACAAT 59.961 45.833 8.70 0.00 39.77 2.71
278 279 4.652421 TCGACTATAGGTGGCCTAACAATT 59.348 41.667 3.32 0.00 39.77 2.32
279 280 4.750098 CGACTATAGGTGGCCTAACAATTG 59.250 45.833 3.32 3.24 39.77 2.32
280 281 5.452776 CGACTATAGGTGGCCTAACAATTGA 60.453 44.000 13.59 0.00 39.77 2.57
281 282 5.681639 ACTATAGGTGGCCTAACAATTGAC 58.318 41.667 13.59 0.00 39.77 3.18
282 283 2.969821 AGGTGGCCTAACAATTGACA 57.030 45.000 13.59 0.00 28.47 3.58
283 284 2.795329 AGGTGGCCTAACAATTGACAG 58.205 47.619 13.59 8.16 28.47 3.51
284 285 2.375174 AGGTGGCCTAACAATTGACAGA 59.625 45.455 13.59 0.00 28.47 3.41
285 286 2.749621 GGTGGCCTAACAATTGACAGAG 59.250 50.000 13.59 3.32 0.00 3.35
286 287 2.162408 GTGGCCTAACAATTGACAGAGC 59.838 50.000 13.59 12.43 0.00 4.09
287 288 2.224744 TGGCCTAACAATTGACAGAGCA 60.225 45.455 13.59 3.64 0.00 4.26
289 290 3.119708 GGCCTAACAATTGACAGAGCAAG 60.120 47.826 13.59 0.00 0.00 4.01
290 291 3.503748 GCCTAACAATTGACAGAGCAAGT 59.496 43.478 13.59 0.00 0.00 3.16
291 292 4.614535 GCCTAACAATTGACAGAGCAAGTG 60.615 45.833 13.59 0.00 46.05 3.16
298 300 2.564771 TGACAGAGCAAGTGTTGGAAG 58.435 47.619 0.00 0.00 0.00 3.46
301 303 3.620488 ACAGAGCAAGTGTTGGAAGAAA 58.380 40.909 0.00 0.00 0.00 2.52
313 315 4.459685 TGTTGGAAGAAAGAAACGGTCAAA 59.540 37.500 0.00 0.00 0.00 2.69
323 325 6.827586 AAGAAACGGTCAAATTATTAGCCA 57.172 33.333 0.00 0.00 0.00 4.75
376 400 1.722011 AAGTGACGCCGATCGATTTT 58.278 45.000 18.66 0.00 41.67 1.82
378 402 0.044161 GTGACGCCGATCGATTTTCG 60.044 55.000 18.66 13.38 41.67 3.46
383 407 1.731351 GCCGATCGATTTTCGCTTTC 58.269 50.000 18.66 0.00 40.21 2.62
411 435 1.745087 CTGCCATGGGTTACACATGAC 59.255 52.381 27.10 17.53 46.60 3.06
453 477 4.530875 CCCTTTCAATGGTCTATGCTTCT 58.469 43.478 0.00 0.00 0.00 2.85
454 478 5.397899 CCCCTTTCAATGGTCTATGCTTCTA 60.398 44.000 0.00 0.00 0.00 2.10
455 479 5.762218 CCCTTTCAATGGTCTATGCTTCTAG 59.238 44.000 0.00 0.00 0.00 2.43
456 480 6.408548 CCCTTTCAATGGTCTATGCTTCTAGA 60.409 42.308 0.00 0.00 0.00 2.43
457 481 7.050377 CCTTTCAATGGTCTATGCTTCTAGAA 58.950 38.462 4.81 4.81 29.78 2.10
459 483 9.770097 CTTTCAATGGTCTATGCTTCTAGAATA 57.230 33.333 5.44 0.00 29.78 1.75
462 486 9.935241 TCAATGGTCTATGCTTCTAGAATAATC 57.065 33.333 5.44 0.00 29.78 1.75
463 487 9.941325 CAATGGTCTATGCTTCTAGAATAATCT 57.059 33.333 5.44 0.00 39.82 2.40
464 488 9.941325 AATGGTCTATGCTTCTAGAATAATCTG 57.059 33.333 5.44 0.00 37.10 2.90
465 489 7.901029 TGGTCTATGCTTCTAGAATAATCTGG 58.099 38.462 5.44 0.00 37.10 3.86
466 490 7.510685 TGGTCTATGCTTCTAGAATAATCTGGT 59.489 37.037 5.44 0.00 37.10 4.00
467 491 7.816995 GGTCTATGCTTCTAGAATAATCTGGTG 59.183 40.741 5.44 0.00 37.10 4.17
468 492 7.330700 GTCTATGCTTCTAGAATAATCTGGTGC 59.669 40.741 5.44 3.23 37.10 5.01
469 493 4.371786 TGCTTCTAGAATAATCTGGTGCG 58.628 43.478 5.44 0.00 37.44 5.34
470 494 3.743396 GCTTCTAGAATAATCTGGTGCGG 59.257 47.826 5.44 0.00 37.10 5.69
473 497 3.704566 TCTAGAATAATCTGGTGCGGTGT 59.295 43.478 0.00 0.00 37.10 4.16
475 499 4.481368 AGAATAATCTGGTGCGGTGTTA 57.519 40.909 0.00 0.00 33.59 2.41
494 518 0.546122 AGCACGCCATATTGGAGGAA 59.454 50.000 0.00 0.00 41.96 3.36
501 525 3.494924 CGCCATATTGGAGGAACATGAGA 60.495 47.826 0.00 0.00 40.96 3.27
504 529 4.458295 CCATATTGGAGGAACATGAGATGC 59.542 45.833 0.00 0.00 40.96 3.91
507 532 1.848388 TGGAGGAACATGAGATGCCAT 59.152 47.619 0.00 0.00 0.00 4.40
510 535 3.548770 GAGGAACATGAGATGCCATCAA 58.451 45.455 7.56 0.00 0.00 2.57
556 641 7.457024 AACTTTTACCGCTAATATTGGTTGT 57.543 32.000 0.00 0.00 37.20 3.32
558 643 8.205131 ACTTTTACCGCTAATATTGGTTGTAG 57.795 34.615 0.00 0.00 37.20 2.74
559 644 8.042515 ACTTTTACCGCTAATATTGGTTGTAGA 58.957 33.333 0.00 0.00 37.20 2.59
560 645 8.967664 TTTTACCGCTAATATTGGTTGTAGAT 57.032 30.769 0.00 0.00 37.20 1.98
561 646 8.967664 TTTACCGCTAATATTGGTTGTAGATT 57.032 30.769 0.00 0.00 37.20 2.40
562 647 8.597662 TTACCGCTAATATTGGTTGTAGATTC 57.402 34.615 0.00 0.00 37.20 2.52
564 649 6.482308 ACCGCTAATATTGGTTGTAGATTCAC 59.518 38.462 0.00 0.00 29.87 3.18
565 650 6.073222 CCGCTAATATTGGTTGTAGATTCACC 60.073 42.308 0.00 0.00 0.00 4.02
567 652 7.870954 CGCTAATATTGGTTGTAGATTCACCTA 59.129 37.037 0.00 0.00 0.00 3.08
568 653 9.726438 GCTAATATTGGTTGTAGATTCACCTAT 57.274 33.333 0.00 0.00 0.00 2.57
573 658 6.509418 TGGTTGTAGATTCACCTATTTTGC 57.491 37.500 0.00 0.00 0.00 3.68
574 659 6.245408 TGGTTGTAGATTCACCTATTTTGCT 58.755 36.000 0.00 0.00 0.00 3.91
576 661 6.183360 GGTTGTAGATTCACCTATTTTGCTCC 60.183 42.308 0.00 0.00 0.00 4.70
577 662 5.116180 TGTAGATTCACCTATTTTGCTCCG 58.884 41.667 0.00 0.00 0.00 4.63
578 663 4.222124 AGATTCACCTATTTTGCTCCGT 57.778 40.909 0.00 0.00 0.00 4.69
579 664 5.353394 AGATTCACCTATTTTGCTCCGTA 57.647 39.130 0.00 0.00 0.00 4.02
583 668 7.990886 AGATTCACCTATTTTGCTCCGTAAATA 59.009 33.333 0.00 0.00 0.00 1.40
584 669 7.548196 TTCACCTATTTTGCTCCGTAAATAG 57.452 36.000 0.00 0.00 41.07 1.73
585 670 5.526111 TCACCTATTTTGCTCCGTAAATAGC 59.474 40.000 0.00 0.00 40.51 2.97
586 671 4.820173 ACCTATTTTGCTCCGTAAATAGCC 59.180 41.667 0.00 0.00 40.51 3.93
587 672 4.819630 CCTATTTTGCTCCGTAAATAGCCA 59.180 41.667 0.00 0.00 40.51 4.75
588 673 4.632538 ATTTTGCTCCGTAAATAGCCAC 57.367 40.909 0.00 0.00 37.97 5.01
589 674 3.343941 TTTGCTCCGTAAATAGCCACT 57.656 42.857 0.00 0.00 37.97 4.00
590 675 3.343941 TTGCTCCGTAAATAGCCACTT 57.656 42.857 0.00 0.00 37.97 3.16
591 676 2.627945 TGCTCCGTAAATAGCCACTTG 58.372 47.619 0.00 0.00 37.97 3.16
593 678 3.007635 GCTCCGTAAATAGCCACTTGTT 58.992 45.455 0.00 0.00 32.40 2.83
594 679 3.181510 GCTCCGTAAATAGCCACTTGTTG 60.182 47.826 0.00 0.00 32.40 3.33
595 680 4.250464 CTCCGTAAATAGCCACTTGTTGA 58.750 43.478 0.00 0.00 0.00 3.18
596 681 4.643463 TCCGTAAATAGCCACTTGTTGAA 58.357 39.130 0.00 0.00 0.00 2.69
597 682 5.064558 TCCGTAAATAGCCACTTGTTGAAA 58.935 37.500 0.00 0.00 0.00 2.69
598 683 5.708230 TCCGTAAATAGCCACTTGTTGAAAT 59.292 36.000 0.00 0.00 0.00 2.17
599 684 6.027749 CCGTAAATAGCCACTTGTTGAAATC 58.972 40.000 0.00 0.00 0.00 2.17
600 685 6.027749 CGTAAATAGCCACTTGTTGAAATCC 58.972 40.000 0.00 0.00 0.00 3.01
601 686 5.405935 AAATAGCCACTTGTTGAAATCCC 57.594 39.130 0.00 0.00 0.00 3.85
603 688 3.806949 AGCCACTTGTTGAAATCCCTA 57.193 42.857 0.00 0.00 0.00 3.53
604 689 3.690460 AGCCACTTGTTGAAATCCCTAG 58.310 45.455 0.00 0.00 0.00 3.02
609 694 6.003950 CCACTTGTTGAAATCCCTAGAAAGA 58.996 40.000 0.00 0.00 0.00 2.52
611 696 7.829211 CCACTTGTTGAAATCCCTAGAAAGATA 59.171 37.037 0.00 0.00 0.00 1.98
612 697 9.231297 CACTTGTTGAAATCCCTAGAAAGATAA 57.769 33.333 0.00 0.00 0.00 1.75
613 698 9.807921 ACTTGTTGAAATCCCTAGAAAGATAAA 57.192 29.630 0.00 0.00 0.00 1.40
632 868 9.780186 AAGATAAATATTTAGAAACGGAGGGAG 57.220 33.333 13.15 0.00 0.00 4.30
637 873 1.386533 TAGAAACGGAGGGAGTAGCG 58.613 55.000 0.00 0.00 0.00 4.26
638 874 0.611340 AGAAACGGAGGGAGTAGCGT 60.611 55.000 0.00 0.00 0.00 5.07
639 875 0.458025 GAAACGGAGGGAGTAGCGTG 60.458 60.000 0.00 0.00 0.00 5.34
644 880 0.671251 GGAGGGAGTAGCGTGATCAG 59.329 60.000 0.00 0.00 0.00 2.90
655 891 7.011482 GGAGTAGCGTGATCAGAAATTACAAAT 59.989 37.037 0.00 0.00 0.00 2.32
656 892 8.268850 AGTAGCGTGATCAGAAATTACAAATT 57.731 30.769 0.00 0.00 0.00 1.82
673 910 9.662545 ATTACAAATTAAAAACAATGCTGTTGC 57.337 25.926 2.86 0.00 45.25 4.17
757 999 2.040412 AGGCCCTAGGAGTTCAAAGTTG 59.960 50.000 11.48 0.00 0.00 3.16
774 1016 7.220030 TCAAAGTTGAGAGAGCATCTAAAAGT 58.780 34.615 0.00 0.00 37.77 2.66
797 1039 5.968387 TTTTTCGTTTTGTGTGTGTGTTT 57.032 30.435 0.00 0.00 0.00 2.83
798 1040 5.968387 TTTTCGTTTTGTGTGTGTGTTTT 57.032 30.435 0.00 0.00 0.00 2.43
799 1041 5.968387 TTTCGTTTTGTGTGTGTGTTTTT 57.032 30.435 0.00 0.00 0.00 1.94
800 1042 5.562705 TTCGTTTTGTGTGTGTGTTTTTC 57.437 34.783 0.00 0.00 0.00 2.29
801 1043 4.861210 TCGTTTTGTGTGTGTGTTTTTCT 58.139 34.783 0.00 0.00 0.00 2.52
802 1044 5.282510 TCGTTTTGTGTGTGTGTTTTTCTT 58.717 33.333 0.00 0.00 0.00 2.52
803 1045 6.436261 TCGTTTTGTGTGTGTGTTTTTCTTA 58.564 32.000 0.00 0.00 0.00 2.10
804 1046 6.916387 TCGTTTTGTGTGTGTGTTTTTCTTAA 59.084 30.769 0.00 0.00 0.00 1.85
805 1047 7.434307 TCGTTTTGTGTGTGTGTTTTTCTTAAA 59.566 29.630 0.00 0.00 0.00 1.52
806 1048 8.056571 CGTTTTGTGTGTGTGTTTTTCTTAAAA 58.943 29.630 0.00 0.00 0.00 1.52
807 1049 9.704098 GTTTTGTGTGTGTGTTTTTCTTAAAAA 57.296 25.926 0.00 0.00 37.99 1.94
856 1115 5.298026 GTGGAGAGAATTTTAGGATTGGAGC 59.702 44.000 0.00 0.00 0.00 4.70
873 1132 2.353839 CGTGCTGCAAAGCCACAC 60.354 61.111 2.77 0.00 32.51 3.82
889 1159 3.568007 GCCACACTGGACAGAAAATACAA 59.432 43.478 6.29 0.00 40.96 2.41
891 1161 5.063204 CCACACTGGACAGAAAATACAAGA 58.937 41.667 6.29 0.00 40.96 3.02
898 1168 5.071788 TGGACAGAAAATACAAGAGGAGTGT 59.928 40.000 0.00 0.00 0.00 3.55
927 1197 2.270986 GCTTTGGGTGGGTCTGCAG 61.271 63.158 7.63 7.63 0.00 4.41
928 1198 2.203480 TTTGGGTGGGTCTGCAGC 60.203 61.111 9.47 4.04 0.00 5.25
929 1199 2.981914 CTTTGGGTGGGTCTGCAGCA 62.982 60.000 9.47 0.00 0.00 4.41
931 1201 3.640407 GGGTGGGTCTGCAGCAGA 61.640 66.667 21.85 21.85 38.25 4.26
939 1209 2.135890 TCTGCAGCAGACCAAGACA 58.864 52.632 21.85 0.00 35.39 3.41
940 1210 0.469494 TCTGCAGCAGACCAAGACAA 59.531 50.000 21.85 0.00 35.39 3.18
942 1212 1.168407 TGCAGCAGACCAAGACAAGC 61.168 55.000 0.00 0.00 0.00 4.01
943 1213 1.168407 GCAGCAGACCAAGACAAGCA 61.168 55.000 0.00 0.00 0.00 3.91
944 1214 1.311859 CAGCAGACCAAGACAAGCAA 58.688 50.000 0.00 0.00 0.00 3.91
946 1216 1.678101 AGCAGACCAAGACAAGCAAAC 59.322 47.619 0.00 0.00 0.00 2.93
947 1217 1.678101 GCAGACCAAGACAAGCAAACT 59.322 47.619 0.00 0.00 0.00 2.66
992 1262 3.145286 TCTCACAGACAGACAGACAGAG 58.855 50.000 0.00 0.00 0.00 3.35
994 1264 2.881513 TCACAGACAGACAGACAGAGAC 59.118 50.000 0.00 0.00 0.00 3.36
1014 1326 1.676968 CACCATGACTCCCGACCAA 59.323 57.895 0.00 0.00 0.00 3.67
1021 1336 1.605058 GACTCCCGACCAAGCTGCTA 61.605 60.000 0.90 0.00 0.00 3.49
1022 1337 0.978146 ACTCCCGACCAAGCTGCTAT 60.978 55.000 0.90 0.00 0.00 2.97
1023 1338 0.249657 CTCCCGACCAAGCTGCTATC 60.250 60.000 0.90 0.23 0.00 2.08
1024 1339 1.592669 CCCGACCAAGCTGCTATCG 60.593 63.158 18.52 18.52 0.00 2.92
1025 1340 2.240500 CCGACCAAGCTGCTATCGC 61.241 63.158 19.52 4.48 0.00 4.58
1027 1342 1.144936 GACCAAGCTGCTATCGCCT 59.855 57.895 0.90 0.00 34.43 5.52
1213 1528 0.251653 TGGTACGTTCCTCTGCTCCT 60.252 55.000 12.78 0.00 0.00 3.69
1214 1529 0.456628 GGTACGTTCCTCTGCTCCTC 59.543 60.000 3.61 0.00 0.00 3.71
1215 1530 0.456628 GTACGTTCCTCTGCTCCTCC 59.543 60.000 0.00 0.00 0.00 4.30
1227 1542 1.344191 GCTCCTCCCTCTTCATGCCT 61.344 60.000 0.00 0.00 0.00 4.75
1228 1543 2.036929 GCTCCTCCCTCTTCATGCCTA 61.037 57.143 0.00 0.00 0.00 3.93
1229 1544 2.618794 CTCCTCCCTCTTCATGCCTAT 58.381 52.381 0.00 0.00 0.00 2.57
1244 1559 7.423844 TCATGCCTATTATCCACCTATACAG 57.576 40.000 0.00 0.00 0.00 2.74
1256 1571 2.292267 CCTATACAGGGTTGCTTGCTG 58.708 52.381 0.00 0.00 38.41 4.41
1257 1572 1.672881 CTATACAGGGTTGCTTGCTGC 59.327 52.381 0.00 0.00 43.25 5.25
1258 1573 0.038744 ATACAGGGTTGCTTGCTGCT 59.961 50.000 0.00 0.00 43.37 4.24
1268 1583 2.011947 TGCTTGCTGCTATGCTAACTG 58.988 47.619 0.00 0.00 43.37 3.16
1269 1584 2.012673 GCTTGCTGCTATGCTAACTGT 58.987 47.619 0.00 0.00 38.95 3.55
1321 1636 2.109229 AGCTGTGCTGTATATCCCCT 57.891 50.000 0.00 0.00 37.57 4.79
1322 1637 1.974236 AGCTGTGCTGTATATCCCCTC 59.026 52.381 0.00 0.00 37.57 4.30
1323 1638 1.337260 GCTGTGCTGTATATCCCCTCG 60.337 57.143 0.00 0.00 0.00 4.63
1324 1639 0.679505 TGTGCTGTATATCCCCTCGC 59.320 55.000 0.00 0.00 0.00 5.03
1344 1659 5.581605 TCGCCAAATGATAATGCTTTCTTC 58.418 37.500 0.00 0.00 0.00 2.87
1362 1681 7.752686 GCTTTCTTCAGTTTGATAATCTCCAAC 59.247 37.037 0.00 0.00 31.26 3.77
1365 1684 8.498054 TCTTCAGTTTGATAATCTCCAACATC 57.502 34.615 0.00 0.00 33.09 3.06
1368 1687 6.317140 TCAGTTTGATAATCTCCAACATCAGC 59.683 38.462 0.00 0.00 33.09 4.26
1369 1688 6.094464 CAGTTTGATAATCTCCAACATCAGCA 59.906 38.462 0.00 0.00 33.09 4.41
1370 1689 6.318144 AGTTTGATAATCTCCAACATCAGCAG 59.682 38.462 0.00 0.00 33.09 4.24
1371 1690 5.619132 TGATAATCTCCAACATCAGCAGA 57.381 39.130 0.00 0.00 0.00 4.26
1372 1691 5.363101 TGATAATCTCCAACATCAGCAGAC 58.637 41.667 0.00 0.00 0.00 3.51
1373 1692 2.706339 ATCTCCAACATCAGCAGACC 57.294 50.000 0.00 0.00 0.00 3.85
1374 1693 0.247460 TCTCCAACATCAGCAGACCG 59.753 55.000 0.00 0.00 0.00 4.79
1375 1694 0.247460 CTCCAACATCAGCAGACCGA 59.753 55.000 0.00 0.00 0.00 4.69
1376 1695 0.904649 TCCAACATCAGCAGACCGAT 59.095 50.000 0.00 0.00 0.00 4.18
1377 1696 1.278985 TCCAACATCAGCAGACCGATT 59.721 47.619 0.00 0.00 0.00 3.34
1378 1697 2.086869 CCAACATCAGCAGACCGATTT 58.913 47.619 0.00 0.00 0.00 2.17
1379 1698 2.096496 CCAACATCAGCAGACCGATTTC 59.904 50.000 0.00 0.00 0.00 2.17
1404 1725 9.910267 TCCTATAACTGTGTCACTAGTTACATA 57.090 33.333 20.59 9.48 40.87 2.29
1420 1741 7.759489 AGTTACATACTTTGATTTCCTGCAA 57.241 32.000 0.00 0.00 31.29 4.08
1426 1747 7.178274 ACATACTTTGATTTCCTGCAACCATTA 59.822 33.333 0.00 0.00 0.00 1.90
1438 1759 5.008019 CCTGCAACCATTAGCTATAACTGTG 59.992 44.000 0.00 0.00 0.00 3.66
1439 1760 4.335315 TGCAACCATTAGCTATAACTGTGC 59.665 41.667 0.00 1.75 0.00 4.57
1450 1771 4.260784 GCTATAACTGTGCCCTGAAATTCG 60.261 45.833 0.00 0.00 0.00 3.34
1457 1778 1.281867 TGCCCTGAAATTCGGATGTCT 59.718 47.619 2.89 0.00 0.00 3.41
1458 1779 1.672881 GCCCTGAAATTCGGATGTCTG 59.327 52.381 2.89 0.00 0.00 3.51
1467 1788 2.542020 TCGGATGTCTGCTTGTTCAA 57.458 45.000 0.00 0.00 0.00 2.69
1469 1790 3.411446 TCGGATGTCTGCTTGTTCAAAT 58.589 40.909 0.00 0.00 0.00 2.32
1499 1829 4.010349 GGTTATATCTGGTTATGGCAGCC 58.990 47.826 3.66 3.66 0.00 4.85
1500 1830 4.506625 GGTTATATCTGGTTATGGCAGCCA 60.507 45.833 18.99 18.99 38.19 4.75
1535 1865 0.843309 TGTCCCCTCTCAAAACAGCA 59.157 50.000 0.00 0.00 0.00 4.41
1556 1886 6.019559 CAGCAAAAAGGCTAAAACTTTGTCTC 60.020 38.462 0.00 0.00 43.68 3.36
1573 1907 4.855340 TGTCTCTAAATTGACCCAATCCC 58.145 43.478 0.00 0.00 32.43 3.85
1583 1917 1.219131 ACCCAATCCCACCTAACCCC 61.219 60.000 0.00 0.00 0.00 4.95
1589 1923 0.104356 TCCCACCTAACCCCTGTTCA 60.104 55.000 0.00 0.00 35.87 3.18
1594 1928 1.703513 ACCTAACCCCTGTTCAGAACC 59.296 52.381 10.93 0.00 35.87 3.62
1604 1938 1.138069 TGTTCAGAACCAAGTCTGCGA 59.862 47.619 10.93 0.00 44.01 5.10
1609 1943 1.222115 GAACCAAGTCTGCGACGCTT 61.222 55.000 22.08 3.56 37.67 4.68
1611 1945 2.856032 CAAGTCTGCGACGCTTGG 59.144 61.111 22.08 11.13 37.67 3.61
1658 1993 2.972505 CGCAAGTCGGTTGGCAGT 60.973 61.111 0.00 0.00 36.56 4.40
1661 1996 0.602905 GCAAGTCGGTTGGCAGTAGT 60.603 55.000 0.00 0.00 36.56 2.73
1663 1998 0.756903 AAGTCGGTTGGCAGTAGTGT 59.243 50.000 0.00 0.00 0.00 3.55
1665 2000 1.544691 AGTCGGTTGGCAGTAGTGTAG 59.455 52.381 0.00 0.00 0.00 2.74
1675 2010 3.306818 GCAGTAGTGTAGCCTATAACGC 58.693 50.000 0.00 0.00 0.00 4.84
1721 2057 2.018515 TGGTCATATGTGTGCAGCATG 58.981 47.619 12.46 0.00 40.87 4.06
1746 2082 1.876156 GTTTGTGTCCCTCTTGAGCTG 59.124 52.381 0.00 0.00 0.00 4.24
1798 2137 1.931172 CGGTAACTAACATTCCTGCCG 59.069 52.381 0.00 0.00 0.00 5.69
1802 2141 4.216902 GGTAACTAACATTCCTGCCGTTTT 59.783 41.667 0.00 0.00 0.00 2.43
1834 2173 1.588674 GACAACACATGTTCCGTGGA 58.411 50.000 0.00 0.00 44.12 4.02
1918 2260 3.129813 ACGATTATACAGAGAACACGCCA 59.870 43.478 0.00 0.00 0.00 5.69
1942 2284 1.079405 CAGTGGGTATGCGAACGGT 60.079 57.895 0.00 0.00 0.00 4.83
1966 2308 3.869272 GCCACCGCTTCATCGCAG 61.869 66.667 0.00 0.00 0.00 5.18
1972 2314 0.531532 CCGCTTCATCGCAGGAAGAT 60.532 55.000 12.60 0.00 43.46 2.40
1973 2315 0.857935 CGCTTCATCGCAGGAAGATC 59.142 55.000 12.60 0.00 43.46 2.75
1975 2317 1.596727 GCTTCATCGCAGGAAGATCAC 59.403 52.381 12.60 0.00 43.46 3.06
1983 2331 1.871418 CAGGAAGATCACCCTGGAGA 58.129 55.000 19.90 0.00 44.68 3.71
1988 2336 1.661463 AGATCACCCTGGAGAAAGCA 58.339 50.000 0.00 0.00 0.00 3.91
2062 2410 5.695816 GGTCAAGATATCTGACAAGCTGATC 59.304 44.000 24.29 13.47 36.66 2.92
2068 2416 1.690283 CTGACAAGCTGATCGGCGTG 61.690 60.000 32.49 32.49 44.73 5.34
2086 2434 0.605319 TGTTCATGGTCGACAAGCCC 60.605 55.000 18.91 0.00 0.00 5.19
2243 2591 3.753797 GGCTAGAAAACTGAAAGAGGTGG 59.246 47.826 0.00 0.00 37.43 4.61
2247 2595 3.947834 AGAAAACTGAAAGAGGTGGTGTG 59.052 43.478 0.00 0.00 37.43 3.82
2267 2615 4.081087 TGTGGGCTTTCTTATCTACAGGAC 60.081 45.833 0.00 0.00 0.00 3.85
2268 2616 3.132289 TGGGCTTTCTTATCTACAGGACG 59.868 47.826 0.00 0.00 0.00 4.79
2283 2634 0.647410 GGACGCACATGACGATTCAG 59.353 55.000 17.41 0.00 34.35 3.02
2308 2659 6.588719 TTATGATTTAACTTGGCACTTGCT 57.411 33.333 0.38 0.00 41.70 3.91
2309 2660 7.695480 TTATGATTTAACTTGGCACTTGCTA 57.305 32.000 0.38 0.00 41.70 3.49
2310 2661 6.588719 ATGATTTAACTTGGCACTTGCTAA 57.411 33.333 0.38 0.05 41.70 3.09
2311 2662 6.588719 TGATTTAACTTGGCACTTGCTAAT 57.411 33.333 0.01 0.00 40.68 1.73
2312 2663 6.389091 TGATTTAACTTGGCACTTGCTAATG 58.611 36.000 0.01 0.00 40.68 1.90
2320 2671 3.262151 TGGCACTTGCTAATGTAGTGGTA 59.738 43.478 0.38 0.00 39.66 3.25
2386 2768 2.601763 CGAGGACGTACAAAGGCATAAC 59.398 50.000 0.00 0.00 34.56 1.89
2449 2831 1.804151 GGTGATGTTGTTGCTAAGCGA 59.196 47.619 0.00 0.00 0.00 4.93
2464 2846 4.090930 GCTAAGCGACGTAAAGATTTCACA 59.909 41.667 0.00 0.00 0.00 3.58
2530 2912 2.424956 GGATGACCCTGCTAAGCAAAAG 59.575 50.000 0.00 0.00 38.41 2.27
2558 2940 7.333921 GTGAGACACTTGAGAATTTGATCATCT 59.666 37.037 0.00 0.00 0.00 2.90
2602 2984 8.055181 TGGCTTATTCCTCTTTCATGTCTTAAT 58.945 33.333 0.00 0.00 0.00 1.40
2604 2986 9.113838 GCTTATTCCTCTTTCATGTCTTAATGA 57.886 33.333 0.00 0.00 34.75 2.57
2608 2990 7.009179 TCCTCTTTCATGTCTTAATGACTGT 57.991 36.000 0.00 0.00 45.54 3.55
2609 2991 8.134202 TCCTCTTTCATGTCTTAATGACTGTA 57.866 34.615 0.00 0.00 45.54 2.74
2610 2992 8.035394 TCCTCTTTCATGTCTTAATGACTGTAC 58.965 37.037 0.00 0.00 45.54 2.90
2611 2993 7.819415 CCTCTTTCATGTCTTAATGACTGTACA 59.181 37.037 0.00 0.00 45.54 2.90
2612 2994 9.376075 CTCTTTCATGTCTTAATGACTGTACAT 57.624 33.333 0.00 0.00 45.54 2.29
2616 2998 8.593492 TCATGTCTTAATGACTGTACATATGC 57.407 34.615 1.58 0.00 45.54 3.14
2617 2999 7.657354 TCATGTCTTAATGACTGTACATATGCC 59.343 37.037 1.58 0.00 45.54 4.40
2618 3000 7.124573 TGTCTTAATGACTGTACATATGCCT 57.875 36.000 1.58 0.00 45.54 4.75
2619 3001 7.564793 TGTCTTAATGACTGTACATATGCCTT 58.435 34.615 1.58 0.00 45.54 4.35
2620 3002 8.046708 TGTCTTAATGACTGTACATATGCCTTT 58.953 33.333 1.58 0.00 45.54 3.11
2621 3003 8.893727 GTCTTAATGACTGTACATATGCCTTTT 58.106 33.333 1.58 0.00 42.21 2.27
2622 3004 9.461312 TCTTAATGACTGTACATATGCCTTTTT 57.539 29.630 1.58 0.00 0.00 1.94
2623 3005 9.507280 CTTAATGACTGTACATATGCCTTTTTG 57.493 33.333 1.58 0.00 0.00 2.44
2624 3006 7.466746 AATGACTGTACATATGCCTTTTTGT 57.533 32.000 1.58 0.00 0.00 2.83
2625 3007 6.892658 TGACTGTACATATGCCTTTTTGTT 57.107 33.333 1.58 0.00 0.00 2.83
2626 3008 7.283625 TGACTGTACATATGCCTTTTTGTTT 57.716 32.000 1.58 0.00 0.00 2.83
2627 3009 7.721402 TGACTGTACATATGCCTTTTTGTTTT 58.279 30.769 1.58 0.00 0.00 2.43
2628 3010 8.200792 TGACTGTACATATGCCTTTTTGTTTTT 58.799 29.630 1.58 0.00 0.00 1.94
2677 3059 5.062683 CCTGATGTCATGTAACAGAGAAACG 59.937 44.000 10.08 0.00 31.50 3.60
2678 3060 5.538118 TGATGTCATGTAACAGAGAAACGT 58.462 37.500 0.00 0.00 31.50 3.99
2725 3107 3.519510 TGCTACCTTGCTGAGTCCTTATT 59.480 43.478 0.00 0.00 0.00 1.40
2730 3112 4.080863 ACCTTGCTGAGTCCTTATTACAGG 60.081 45.833 0.00 0.00 34.86 4.00
2736 3118 6.382859 TGCTGAGTCCTTATTACAGGTCATTA 59.617 38.462 0.00 0.00 35.15 1.90
2738 3120 7.386299 GCTGAGTCCTTATTACAGGTCATTATG 59.614 40.741 0.00 0.00 35.15 1.90
2818 3200 4.883585 GGAAATGATTGTGTGGATGCTCTA 59.116 41.667 0.00 0.00 0.00 2.43
2855 3237 0.601311 GTCTGGCAGTCTTCAAGCGT 60.601 55.000 15.27 0.00 0.00 5.07
2896 3278 7.631717 AAAGCTAAAGGACATACTCAATTCC 57.368 36.000 0.00 0.00 0.00 3.01
3101 3483 9.690434 CTCATTTACAGATTCGTAAGTTTAAGC 57.310 33.333 0.00 0.00 33.11 3.09
3114 3496 3.518590 AGTTTAAGCGGATCTACCAACG 58.481 45.455 0.00 0.00 38.90 4.10
3117 3499 1.722011 AAGCGGATCTACCAACGTTG 58.278 50.000 21.47 21.47 38.90 4.10
3176 3558 0.907486 CTGTGGCCAATCTCCAGAGA 59.093 55.000 7.24 0.00 44.98 3.10
3179 3561 0.907486 TGGCCAATCTCCAGAGACAG 59.093 55.000 0.61 0.00 40.75 3.51
3197 3579 2.022195 CAGATGCCAAAGGACATCAGG 58.978 52.381 16.86 8.97 44.16 3.86
3284 3666 1.974236 ACTCCTGGTCCTGAACTTCAG 59.026 52.381 11.37 11.37 43.91 3.02
3345 3732 9.436957 TGTTAGTATTCCACAAAAGAGATTCTC 57.563 33.333 5.49 5.49 0.00 2.87
3360 3747 8.010733 AAGAGATTCTCTTCTGTAATCTCCAG 57.989 38.462 20.81 0.00 46.42 3.86
3361 3748 6.729690 AGATTCTCTTCTGTAATCTCCAGG 57.270 41.667 0.00 0.00 35.55 4.45
3442 3829 5.883661 AGCGCCATAATTGATGCATATTAC 58.116 37.500 2.29 0.00 33.79 1.89
3566 3953 2.010497 TCTGACTCTGAATCTCGGTCG 58.990 52.381 0.00 0.00 0.00 4.79
3567 3954 0.452184 TGACTCTGAATCTCGGTCGC 59.548 55.000 0.00 0.00 0.00 5.19
3577 3965 0.173481 TCTCGGTCGCCAGAAAGATG 59.827 55.000 0.00 0.00 0.00 2.90
3629 4017 8.269424 GCTACAAGTATTATCATCTGAACAACG 58.731 37.037 0.00 0.00 0.00 4.10
3796 4190 7.843490 TGTAGGTTTCACTTAGATTGTATGC 57.157 36.000 0.00 0.00 0.00 3.14
3808 4202 4.298626 AGATTGTATGCCTTACTCCCTCA 58.701 43.478 0.00 0.00 0.00 3.86
3852 4246 2.455674 GTGTATGCACTGGTCAGACA 57.544 50.000 6.69 3.32 42.13 3.41
3853 4247 2.341257 GTGTATGCACTGGTCAGACAG 58.659 52.381 6.69 0.90 42.13 3.51
3854 4248 2.029020 GTGTATGCACTGGTCAGACAGA 60.029 50.000 6.69 0.00 42.13 3.41
3858 4259 4.558226 ATGCACTGGTCAGACAGAAATA 57.442 40.909 2.17 0.00 40.97 1.40
3884 4285 4.545678 AGAGGACACTGAGAGAATAGCAT 58.454 43.478 0.00 0.00 0.00 3.79
3914 4315 9.770097 ATTGTGATCACGATAGACATAAAAGAT 57.230 29.630 24.47 0.00 41.38 2.40
3915 4316 8.803201 TGTGATCACGATAGACATAAAAGATC 57.197 34.615 20.54 0.00 41.38 2.75
3952 4354 6.264909 CAGAATTTCTGCACAAACTTGAAC 57.735 37.500 13.20 0.00 37.72 3.18
3963 4365 3.689649 ACAAACTTGAACTGTCACTGGTC 59.310 43.478 0.00 0.00 31.90 4.02
3990 4396 6.418819 GTGACATGAAAGTGAATTTGAAGGTG 59.581 38.462 0.00 0.00 0.00 4.00
3995 4401 8.706035 CATGAAAGTGAATTTGAAGGTGATTTC 58.294 33.333 0.00 0.00 0.00 2.17
3999 4405 5.299279 AGTGAATTTGAAGGTGATTTCGTGT 59.701 36.000 0.00 0.00 0.00 4.49
4002 4408 7.481798 GTGAATTTGAAGGTGATTTCGTGTATC 59.518 37.037 0.00 0.00 0.00 2.24
4022 4428 4.976224 TCGCTGCTAGTTATCAACAGTA 57.024 40.909 0.00 0.00 0.00 2.74
4028 4434 7.272299 CGCTGCTAGTTATCAACAGTATATCAG 59.728 40.741 0.00 0.00 0.00 2.90
4031 4437 9.750125 TGCTAGTTATCAACAGTATATCAGTTG 57.250 33.333 0.00 0.00 42.37 3.16
4035 4441 7.764443 AGTTATCAACAGTATATCAGTTGCGTT 59.236 33.333 8.98 0.00 41.31 4.84
4037 4443 6.880822 TCAACAGTATATCAGTTGCGTTAC 57.119 37.500 8.98 0.00 41.31 2.50
4042 4448 3.513680 ATATCAGTTGCGTTACGGTGA 57.486 42.857 6.94 0.00 0.00 4.02
4045 4451 0.110823 CAGTTGCGTTACGGTGAAGC 60.111 55.000 6.94 3.98 0.00 3.86
4047 4453 0.584876 GTTGCGTTACGGTGAAGCTT 59.415 50.000 6.94 0.00 0.00 3.74
4053 4459 3.422732 GCGTTACGGTGAAGCTTAAGTTC 60.423 47.826 6.94 7.45 0.00 3.01
4054 4460 3.985925 CGTTACGGTGAAGCTTAAGTTCT 59.014 43.478 0.00 0.00 0.00 3.01
4067 4491 4.697352 GCTTAAGTTCTGAAATCTGCCTGA 59.303 41.667 4.02 0.00 0.00 3.86
4086 4512 3.349927 TGAAAATCATGGCAGGTGAGAG 58.650 45.455 0.00 0.00 0.00 3.20
4090 4516 2.479566 TCATGGCAGGTGAGAGAAAC 57.520 50.000 0.00 0.00 0.00 2.78
4115 4541 8.966868 ACCACATCTTAATTATGTACCTTTTGG 58.033 33.333 3.90 0.00 39.48 3.28
4155 4665 7.505258 TGTTGGTTATATGTTAGCTGCTGATA 58.495 34.615 13.43 2.28 0.00 2.15
4258 4787 7.272144 AGGGTTTCTTGGTCTTAGAATGTAT 57.728 36.000 0.00 0.00 32.09 2.29
4273 4804 3.715648 ATGTATCCTCCCCAGACTTCT 57.284 47.619 0.00 0.00 0.00 2.85
4328 4863 2.390288 CGAAACATCGCCGTCGTG 59.610 61.111 0.00 0.00 36.96 4.35
4340 4875 1.298157 CCGTCGTGTTGACCATGCAT 61.298 55.000 0.00 0.00 45.23 3.96
4344 4879 2.033747 GTCGTGTTGACCATGCATATCG 60.034 50.000 0.00 0.00 42.04 2.92
4406 4944 9.208022 CAAGACTATATTGTCAGTCAAACAGAA 57.792 33.333 17.69 0.00 42.99 3.02
4415 4953 6.918626 TGTCAGTCAAACAGAATTCAACAAA 58.081 32.000 8.44 0.00 0.00 2.83
4421 4959 8.415553 AGTCAAACAGAATTCAACAAATCATCA 58.584 29.630 8.44 0.00 0.00 3.07
4449 4987 7.448469 TCAGTATCCTTTTTCTTTTCTCCCTTG 59.552 37.037 0.00 0.00 0.00 3.61
4500 5043 6.756542 GCCAACAACACAAAAAGAAAGACTAT 59.243 34.615 0.00 0.00 0.00 2.12
4501 5044 7.277760 GCCAACAACACAAAAAGAAAGACTATT 59.722 33.333 0.00 0.00 0.00 1.73
4502 5045 9.796120 CCAACAACACAAAAAGAAAGACTATTA 57.204 29.630 0.00 0.00 0.00 0.98
4535 5078 8.687824 AAAAGACTACACAAGTTCAAACATTG 57.312 30.769 0.00 0.78 39.07 2.82
4536 5079 7.391148 AAGACTACACAAGTTCAAACATTGT 57.609 32.000 0.00 1.33 39.07 2.71
4542 5085 6.949578 CACAAGTTCAAACATTGTGTTCTT 57.050 33.333 19.16 0.00 45.49 2.52
4543 5086 7.350110 CACAAGTTCAAACATTGTGTTCTTT 57.650 32.000 19.16 0.00 45.49 2.52
4544 5087 7.447430 CACAAGTTCAAACATTGTGTTCTTTC 58.553 34.615 19.16 0.00 45.49 2.62
4545 5088 6.307800 ACAAGTTCAAACATTGTGTTCTTTCG 59.692 34.615 8.77 0.00 40.14 3.46
4546 5089 5.339990 AGTTCAAACATTGTGTTCTTTCGG 58.660 37.500 0.00 0.00 40.14 4.30
4547 5090 4.974368 TCAAACATTGTGTTCTTTCGGT 57.026 36.364 0.00 0.00 40.14 4.69
4548 5091 5.317733 TCAAACATTGTGTTCTTTCGGTT 57.682 34.783 0.00 0.00 40.14 4.44
4549 5092 6.438259 TCAAACATTGTGTTCTTTCGGTTA 57.562 33.333 0.00 0.00 40.14 2.85
4550 5093 6.491394 TCAAACATTGTGTTCTTTCGGTTAG 58.509 36.000 0.00 0.00 40.14 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.610242 CGGATCTCGTAGCTATTGCAATC 59.390 47.826 16.86 2.18 42.74 2.67
44 45 6.628065 GTGTATATTTATCGCGGATCTCGTAG 59.372 42.308 6.13 2.73 41.72 3.51
60 61 9.008965 TGTACTTGCAATGAACTGTGTATATTT 57.991 29.630 0.00 0.00 0.00 1.40
96 97 7.983484 CGGGTCACCAGTTTAGTTTAGTATATT 59.017 37.037 0.00 0.00 36.13 1.28
99 100 5.337813 CCGGGTCACCAGTTTAGTTTAGTAT 60.338 44.000 0.00 0.00 36.13 2.12
101 102 3.244318 CCGGGTCACCAGTTTAGTTTAGT 60.244 47.826 0.00 0.00 36.13 2.24
122 123 3.793559 AGATCTTGTATTACACACGGCC 58.206 45.455 0.00 0.00 36.69 6.13
123 124 6.924060 AGATAAGATCTTGTATTACACACGGC 59.076 38.462 18.47 0.00 36.69 5.68
135 136 9.647918 TTCCACTAGTCATAGATAAGATCTTGT 57.352 33.333 18.47 11.67 40.76 3.16
163 164 7.464577 CGTGAACGTGATTATTCATGACATTCT 60.465 37.037 12.61 0.00 42.15 2.40
183 184 1.920574 CCATCTCGATCACACGTGAAC 59.079 52.381 25.01 9.04 43.58 3.18
187 188 1.751437 TCTCCATCTCGATCACACGT 58.249 50.000 0.00 0.00 34.70 4.49
210 211 8.973182 TATTGGTCAATTCATGCATATGCATAT 58.027 29.630 36.15 26.12 44.16 1.78
211 212 8.245491 GTATTGGTCAATTCATGCATATGCATA 58.755 33.333 36.15 25.18 44.16 3.14
239 240 2.365068 CGACCAGTCAGCGACAACG 61.365 63.158 10.52 0.00 42.93 4.10
240 241 1.007734 TCGACCAGTCAGCGACAAC 60.008 57.895 10.52 0.00 34.60 3.32
241 242 3.439008 TCGACCAGTCAGCGACAA 58.561 55.556 10.52 0.00 34.60 3.18
244 245 2.210961 CTATAGTCGACCAGTCAGCGA 58.789 52.381 13.01 0.00 0.00 4.93
245 246 1.264557 CCTATAGTCGACCAGTCAGCG 59.735 57.143 13.01 0.00 0.00 5.18
263 264 2.375174 TCTGTCAATTGTTAGGCCACCT 59.625 45.455 5.01 0.00 37.71 4.00
265 266 2.162408 GCTCTGTCAATTGTTAGGCCAC 59.838 50.000 5.01 0.00 0.00 5.01
270 271 5.679734 ACACTTGCTCTGTCAATTGTTAG 57.320 39.130 5.13 5.45 36.76 2.34
271 272 5.221028 CCAACACTTGCTCTGTCAATTGTTA 60.221 40.000 5.13 0.00 43.36 2.41
272 273 4.440525 CCAACACTTGCTCTGTCAATTGTT 60.441 41.667 5.13 11.77 44.89 2.83
273 274 3.067180 CCAACACTTGCTCTGTCAATTGT 59.933 43.478 5.13 0.00 40.18 2.71
275 276 3.554934 TCCAACACTTGCTCTGTCAATT 58.445 40.909 0.00 0.00 0.00 2.32
277 278 2.708216 TCCAACACTTGCTCTGTCAA 57.292 45.000 0.00 0.00 0.00 3.18
278 279 2.170397 TCTTCCAACACTTGCTCTGTCA 59.830 45.455 0.00 0.00 0.00 3.58
279 280 2.838736 TCTTCCAACACTTGCTCTGTC 58.161 47.619 0.00 0.00 0.00 3.51
280 281 3.281727 TTCTTCCAACACTTGCTCTGT 57.718 42.857 0.00 0.00 0.00 3.41
281 282 3.879295 TCTTTCTTCCAACACTTGCTCTG 59.121 43.478 0.00 0.00 0.00 3.35
282 283 4.156455 TCTTTCTTCCAACACTTGCTCT 57.844 40.909 0.00 0.00 0.00 4.09
283 284 4.900635 TTCTTTCTTCCAACACTTGCTC 57.099 40.909 0.00 0.00 0.00 4.26
284 285 4.438744 CGTTTCTTTCTTCCAACACTTGCT 60.439 41.667 0.00 0.00 0.00 3.91
285 286 3.791353 CGTTTCTTTCTTCCAACACTTGC 59.209 43.478 0.00 0.00 0.00 4.01
286 287 4.142469 ACCGTTTCTTTCTTCCAACACTTG 60.142 41.667 0.00 0.00 0.00 3.16
287 288 4.014406 ACCGTTTCTTTCTTCCAACACTT 58.986 39.130 0.00 0.00 0.00 3.16
289 290 3.375922 TGACCGTTTCTTTCTTCCAACAC 59.624 43.478 0.00 0.00 0.00 3.32
290 291 3.611970 TGACCGTTTCTTTCTTCCAACA 58.388 40.909 0.00 0.00 0.00 3.33
291 292 4.625972 TTGACCGTTTCTTTCTTCCAAC 57.374 40.909 0.00 0.00 0.00 3.77
292 293 5.845391 ATTTGACCGTTTCTTTCTTCCAA 57.155 34.783 0.00 0.00 0.00 3.53
298 300 7.309920 TGGCTAATAATTTGACCGTTTCTTTC 58.690 34.615 0.00 0.00 0.00 2.62
301 303 6.177610 TCTGGCTAATAATTTGACCGTTTCT 58.822 36.000 0.00 0.00 0.00 2.52
323 325 8.817876 AGTCATGAGTCATATTCATCATCATCT 58.182 33.333 5.03 0.00 33.14 2.90
411 435 2.158842 GGGACCTTGACCTCATCTCATG 60.159 54.545 0.00 0.00 0.00 3.07
453 477 4.481368 AACACCGCACCAGATTATTCTA 57.519 40.909 0.00 0.00 0.00 2.10
454 478 3.350219 AACACCGCACCAGATTATTCT 57.650 42.857 0.00 0.00 0.00 2.40
455 479 3.002348 GCTAACACCGCACCAGATTATTC 59.998 47.826 0.00 0.00 0.00 1.75
456 480 2.943033 GCTAACACCGCACCAGATTATT 59.057 45.455 0.00 0.00 0.00 1.40
457 481 2.093181 TGCTAACACCGCACCAGATTAT 60.093 45.455 0.00 0.00 31.40 1.28
459 483 0.036164 TGCTAACACCGCACCAGATT 59.964 50.000 0.00 0.00 31.40 2.40
460 484 1.676968 TGCTAACACCGCACCAGAT 59.323 52.632 0.00 0.00 31.40 2.90
466 490 2.508586 TATGGCGTGCTAACACCGCA 62.509 55.000 12.68 0.00 44.40 5.69
467 491 1.157870 ATATGGCGTGCTAACACCGC 61.158 55.000 0.00 0.00 44.40 5.68
468 492 1.003972 CAATATGGCGTGCTAACACCG 60.004 52.381 0.00 0.00 44.40 4.94
469 493 1.333619 CCAATATGGCGTGCTAACACC 59.666 52.381 0.00 0.00 44.40 4.16
470 494 2.285083 TCCAATATGGCGTGCTAACAC 58.715 47.619 0.00 0.00 38.79 3.32
473 497 1.765904 TCCTCCAATATGGCGTGCTAA 59.234 47.619 0.00 0.00 37.47 3.09
475 499 0.546122 TTCCTCCAATATGGCGTGCT 59.454 50.000 0.00 0.00 37.47 4.40
494 518 4.028131 ACCATTTTGATGGCATCTCATGT 58.972 39.130 26.49 13.74 45.47 3.21
501 525 7.422465 AATAAGTGTACCATTTTGATGGCAT 57.578 32.000 0.00 0.00 45.47 4.40
529 614 9.843334 CAACCAATATTAGCGGTAAAAGTTTTA 57.157 29.630 11.60 3.88 31.12 1.52
541 626 6.706270 AGGTGAATCTACAACCAATATTAGCG 59.294 38.462 0.00 0.00 0.00 4.26
548 633 7.397192 AGCAAAATAGGTGAATCTACAACCAAT 59.603 33.333 0.00 0.00 0.00 3.16
549 634 6.719370 AGCAAAATAGGTGAATCTACAACCAA 59.281 34.615 0.00 0.00 0.00 3.67
550 635 6.245408 AGCAAAATAGGTGAATCTACAACCA 58.755 36.000 0.00 0.00 0.00 3.67
551 636 6.183360 GGAGCAAAATAGGTGAATCTACAACC 60.183 42.308 0.00 0.00 0.00 3.77
552 637 6.456988 CGGAGCAAAATAGGTGAATCTACAAC 60.457 42.308 0.00 0.00 0.00 3.32
553 638 5.584649 CGGAGCAAAATAGGTGAATCTACAA 59.415 40.000 0.00 0.00 0.00 2.41
554 639 5.116180 CGGAGCAAAATAGGTGAATCTACA 58.884 41.667 0.00 0.00 0.00 2.74
556 641 5.353394 ACGGAGCAAAATAGGTGAATCTA 57.647 39.130 0.00 0.00 0.00 1.98
558 643 6.431198 TTTACGGAGCAAAATAGGTGAATC 57.569 37.500 0.00 0.00 0.00 2.52
559 644 7.255139 GCTATTTACGGAGCAAAATAGGTGAAT 60.255 37.037 13.70 0.00 42.28 2.57
560 645 6.037830 GCTATTTACGGAGCAAAATAGGTGAA 59.962 38.462 13.70 0.00 42.28 3.18
561 646 5.526111 GCTATTTACGGAGCAAAATAGGTGA 59.474 40.000 13.70 0.00 42.28 4.02
562 647 5.277828 GGCTATTTACGGAGCAAAATAGGTG 60.278 44.000 13.70 0.00 42.28 4.00
564 649 4.819630 TGGCTATTTACGGAGCAAAATAGG 59.180 41.667 13.70 1.03 42.28 2.57
565 650 5.527582 AGTGGCTATTTACGGAGCAAAATAG 59.472 40.000 9.43 9.43 43.59 1.73
567 652 4.270008 AGTGGCTATTTACGGAGCAAAAT 58.730 39.130 0.00 0.00 40.64 1.82
568 653 3.681593 AGTGGCTATTTACGGAGCAAAA 58.318 40.909 0.00 0.00 40.64 2.44
569 654 3.343941 AGTGGCTATTTACGGAGCAAA 57.656 42.857 0.00 0.00 40.64 3.68
571 656 2.027561 ACAAGTGGCTATTTACGGAGCA 60.028 45.455 0.00 0.00 40.64 4.26
572 657 2.629051 ACAAGTGGCTATTTACGGAGC 58.371 47.619 0.00 0.00 38.00 4.70
573 658 4.250464 TCAACAAGTGGCTATTTACGGAG 58.750 43.478 0.00 0.00 0.00 4.63
574 659 4.274602 TCAACAAGTGGCTATTTACGGA 57.725 40.909 0.00 0.00 0.00 4.69
576 661 6.027749 GGATTTCAACAAGTGGCTATTTACG 58.972 40.000 0.00 0.00 0.00 3.18
577 662 6.152831 AGGGATTTCAACAAGTGGCTATTTAC 59.847 38.462 0.00 0.00 0.00 2.01
578 663 6.252995 AGGGATTTCAACAAGTGGCTATTTA 58.747 36.000 0.00 0.00 0.00 1.40
579 664 5.086621 AGGGATTTCAACAAGTGGCTATTT 58.913 37.500 0.00 0.00 0.00 1.40
583 668 2.683211 AGGGATTTCAACAAGTGGCT 57.317 45.000 0.00 0.00 0.00 4.75
584 669 3.686016 TCTAGGGATTTCAACAAGTGGC 58.314 45.455 0.00 0.00 0.00 5.01
585 670 6.003950 TCTTTCTAGGGATTTCAACAAGTGG 58.996 40.000 0.00 0.00 0.00 4.00
586 671 7.693969 ATCTTTCTAGGGATTTCAACAAGTG 57.306 36.000 0.00 0.00 0.00 3.16
587 672 9.807921 TTTATCTTTCTAGGGATTTCAACAAGT 57.192 29.630 0.00 0.00 0.00 3.16
611 696 6.990939 GCTACTCCCTCCGTTTCTAAATATTT 59.009 38.462 5.89 5.89 0.00 1.40
612 697 6.522946 GCTACTCCCTCCGTTTCTAAATATT 58.477 40.000 0.00 0.00 0.00 1.28
613 698 5.278858 CGCTACTCCCTCCGTTTCTAAATAT 60.279 44.000 0.00 0.00 0.00 1.28
616 701 2.165030 CGCTACTCCCTCCGTTTCTAAA 59.835 50.000 0.00 0.00 0.00 1.85
617 702 1.747355 CGCTACTCCCTCCGTTTCTAA 59.253 52.381 0.00 0.00 0.00 2.10
618 703 1.340405 ACGCTACTCCCTCCGTTTCTA 60.340 52.381 0.00 0.00 0.00 2.10
619 704 0.611340 ACGCTACTCCCTCCGTTTCT 60.611 55.000 0.00 0.00 0.00 2.52
620 705 0.458025 CACGCTACTCCCTCCGTTTC 60.458 60.000 0.00 0.00 0.00 2.78
621 706 0.896940 TCACGCTACTCCCTCCGTTT 60.897 55.000 0.00 0.00 0.00 3.60
622 707 0.683504 ATCACGCTACTCCCTCCGTT 60.684 55.000 0.00 0.00 0.00 4.44
626 711 1.681538 TCTGATCACGCTACTCCCTC 58.318 55.000 0.00 0.00 0.00 4.30
628 713 2.961526 TTTCTGATCACGCTACTCCC 57.038 50.000 0.00 0.00 0.00 4.30
632 868 9.982291 TTAATTTGTAATTTCTGATCACGCTAC 57.018 29.630 0.00 0.00 0.00 3.58
655 891 6.442952 ACGATAGCAACAGCATTGTTTTTAA 58.557 32.000 0.00 0.00 42.28 1.52
656 892 6.007936 ACGATAGCAACAGCATTGTTTTTA 57.992 33.333 0.00 0.00 42.28 1.52
662 898 6.202762 TCCTTATTACGATAGCAACAGCATTG 59.797 38.462 0.00 0.00 42.67 2.82
667 904 8.088981 ACCTAATCCTTATTACGATAGCAACAG 58.911 37.037 0.00 0.00 42.67 3.16
710 947 6.918892 TTGGATTGTGAGATTTACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
780 1022 5.568747 AAGAAAAACACACACACAAAACG 57.431 34.783 0.00 0.00 0.00 3.60
781 1023 9.704098 TTTTTAAGAAAAACACACACACAAAAC 57.296 25.926 0.00 0.00 35.57 2.43
834 1093 4.513318 CGCTCCAATCCTAAAATTCTCTCC 59.487 45.833 0.00 0.00 0.00 3.71
836 1095 4.878397 CACGCTCCAATCCTAAAATTCTCT 59.122 41.667 0.00 0.00 0.00 3.10
837 1096 4.496507 GCACGCTCCAATCCTAAAATTCTC 60.497 45.833 0.00 0.00 0.00 2.87
842 1101 2.083774 CAGCACGCTCCAATCCTAAAA 58.916 47.619 0.00 0.00 0.00 1.52
843 1102 1.737838 CAGCACGCTCCAATCCTAAA 58.262 50.000 0.00 0.00 0.00 1.85
844 1103 0.744414 GCAGCACGCTCCAATCCTAA 60.744 55.000 0.00 0.00 37.77 2.69
866 1125 2.664402 ATTTTCTGTCCAGTGTGGCT 57.336 45.000 0.00 0.00 37.47 4.75
867 1126 3.146066 TGTATTTTCTGTCCAGTGTGGC 58.854 45.455 0.00 0.00 37.47 5.01
870 1129 5.071788 TCCTCTTGTATTTTCTGTCCAGTGT 59.928 40.000 0.00 0.00 0.00 3.55
873 1132 5.641209 CACTCCTCTTGTATTTTCTGTCCAG 59.359 44.000 0.00 0.00 0.00 3.86
889 1159 1.687612 CAATGGGCCACACTCCTCT 59.312 57.895 9.28 0.00 0.00 3.69
891 1161 2.765969 CCAATGGGCCACACTCCT 59.234 61.111 9.28 0.00 0.00 3.69
927 1197 1.678101 AGTTTGCTTGTCTTGGTCTGC 59.322 47.619 0.00 0.00 0.00 4.26
928 1198 4.576463 ACTTAGTTTGCTTGTCTTGGTCTG 59.424 41.667 0.00 0.00 0.00 3.51
929 1199 4.576463 CACTTAGTTTGCTTGTCTTGGTCT 59.424 41.667 0.00 0.00 0.00 3.85
931 1201 3.632145 CCACTTAGTTTGCTTGTCTTGGT 59.368 43.478 0.00 0.00 0.00 3.67
933 1203 3.550842 GCCCACTTAGTTTGCTTGTCTTG 60.551 47.826 0.00 0.00 0.00 3.02
934 1204 2.623416 GCCCACTTAGTTTGCTTGTCTT 59.377 45.455 0.00 0.00 0.00 3.01
938 1208 1.336240 GCAGCCCACTTAGTTTGCTTG 60.336 52.381 3.02 1.90 0.00 4.01
939 1209 0.961753 GCAGCCCACTTAGTTTGCTT 59.038 50.000 3.02 0.00 0.00 3.91
940 1210 1.237285 CGCAGCCCACTTAGTTTGCT 61.237 55.000 0.16 0.16 0.00 3.91
992 1262 1.987855 TCGGGAGTCATGGTGGGTC 60.988 63.158 0.00 0.00 0.00 4.46
994 1264 2.584608 GTCGGGAGTCATGGTGGG 59.415 66.667 0.00 0.00 0.00 4.61
1021 1336 1.072505 TAGGGTAGGGAGGAGGCGAT 61.073 60.000 0.00 0.00 0.00 4.58
1022 1337 1.698840 TAGGGTAGGGAGGAGGCGA 60.699 63.158 0.00 0.00 0.00 5.54
1023 1338 1.531128 GTAGGGTAGGGAGGAGGCG 60.531 68.421 0.00 0.00 0.00 5.52
1024 1339 1.152290 GGTAGGGTAGGGAGGAGGC 60.152 68.421 0.00 0.00 0.00 4.70
1025 1340 0.483770 GAGGTAGGGTAGGGAGGAGG 59.516 65.000 0.00 0.00 0.00 4.30
1027 1342 2.004408 GCGAGGTAGGGTAGGGAGGA 62.004 65.000 0.00 0.00 0.00 3.71
1213 1528 4.287067 GTGGATAATAGGCATGAAGAGGGA 59.713 45.833 0.00 0.00 0.00 4.20
1214 1529 4.566488 GGTGGATAATAGGCATGAAGAGGG 60.566 50.000 0.00 0.00 0.00 4.30
1215 1530 4.288105 AGGTGGATAATAGGCATGAAGAGG 59.712 45.833 0.00 0.00 0.00 3.69
1227 1542 6.088819 AGCAACCCTGTATAGGTGGATAATA 58.911 40.000 4.65 0.00 42.96 0.98
1228 1543 4.913968 AGCAACCCTGTATAGGTGGATAAT 59.086 41.667 4.65 0.00 42.96 1.28
1229 1544 4.303794 AGCAACCCTGTATAGGTGGATAA 58.696 43.478 4.65 0.00 42.96 1.75
1256 1571 1.667724 CCACTGCACAGTTAGCATAGC 59.332 52.381 0.00 0.00 41.82 2.97
1257 1572 3.251479 TCCACTGCACAGTTAGCATAG 57.749 47.619 0.00 0.00 41.82 2.23
1258 1573 3.912496 ATCCACTGCACAGTTAGCATA 57.088 42.857 0.00 0.00 41.82 3.14
1311 1626 3.695830 TCATTTGGCGAGGGGATATAC 57.304 47.619 0.00 0.00 0.00 1.47
1312 1627 6.356556 CATTATCATTTGGCGAGGGGATATA 58.643 40.000 0.00 0.00 0.00 0.86
1313 1628 4.927267 TTATCATTTGGCGAGGGGATAT 57.073 40.909 0.00 0.00 0.00 1.63
1314 1629 4.588899 CATTATCATTTGGCGAGGGGATA 58.411 43.478 0.00 0.00 0.00 2.59
1315 1630 3.424703 CATTATCATTTGGCGAGGGGAT 58.575 45.455 0.00 0.00 0.00 3.85
1317 1632 1.270550 GCATTATCATTTGGCGAGGGG 59.729 52.381 0.00 0.00 0.00 4.79
1318 1633 2.233271 AGCATTATCATTTGGCGAGGG 58.767 47.619 0.00 0.00 0.00 4.30
1319 1634 3.996150 AAGCATTATCATTTGGCGAGG 57.004 42.857 0.00 0.00 0.00 4.63
1320 1635 5.179045 AGAAAGCATTATCATTTGGCGAG 57.821 39.130 0.00 0.00 0.00 5.03
1321 1636 5.125257 TGAAGAAAGCATTATCATTTGGCGA 59.875 36.000 0.00 0.00 0.00 5.54
1322 1637 5.342433 TGAAGAAAGCATTATCATTTGGCG 58.658 37.500 0.00 0.00 0.00 5.69
1323 1638 6.335777 ACTGAAGAAAGCATTATCATTTGGC 58.664 36.000 0.00 0.00 0.00 4.52
1324 1639 8.653338 CAAACTGAAGAAAGCATTATCATTTGG 58.347 33.333 0.00 0.00 0.00 3.28
1344 1659 6.094464 TGCTGATGTTGGAGATTATCAAACTG 59.906 38.462 0.59 0.00 41.77 3.16
1362 1681 2.322355 AGGAAATCGGTCTGCTGATG 57.678 50.000 0.00 0.00 40.40 3.07
1365 1684 4.747108 CAGTTATAGGAAATCGGTCTGCTG 59.253 45.833 0.00 0.00 0.00 4.41
1368 1687 5.661458 ACACAGTTATAGGAAATCGGTCTG 58.339 41.667 0.00 0.00 0.00 3.51
1369 1688 5.421056 TGACACAGTTATAGGAAATCGGTCT 59.579 40.000 0.00 0.00 0.00 3.85
1370 1689 5.519206 GTGACACAGTTATAGGAAATCGGTC 59.481 44.000 0.00 0.00 0.00 4.79
1371 1690 5.187186 AGTGACACAGTTATAGGAAATCGGT 59.813 40.000 8.59 0.00 0.00 4.69
1372 1691 5.661458 AGTGACACAGTTATAGGAAATCGG 58.339 41.667 8.59 0.00 0.00 4.18
1373 1692 7.481642 ACTAGTGACACAGTTATAGGAAATCG 58.518 38.462 8.59 0.00 0.00 3.34
1376 1695 9.081204 TGTAACTAGTGACACAGTTATAGGAAA 57.919 33.333 22.26 7.82 38.95 3.13
1377 1696 8.640063 TGTAACTAGTGACACAGTTATAGGAA 57.360 34.615 22.26 8.29 38.95 3.36
1378 1697 8.818622 ATGTAACTAGTGACACAGTTATAGGA 57.181 34.615 15.63 13.36 38.95 2.94
1379 1698 9.947669 GTATGTAACTAGTGACACAGTTATAGG 57.052 37.037 15.63 4.35 38.95 2.57
1400 1719 4.832266 TGGTTGCAGGAAATCAAAGTATGT 59.168 37.500 0.00 0.00 0.00 2.29
1401 1720 5.389859 TGGTTGCAGGAAATCAAAGTATG 57.610 39.130 0.00 0.00 0.00 2.39
1404 1725 4.961438 AATGGTTGCAGGAAATCAAAGT 57.039 36.364 0.00 0.00 0.00 2.66
1420 1741 3.716872 AGGGCACAGTTATAGCTAATGGT 59.283 43.478 0.00 0.00 0.00 3.55
1426 1747 4.510167 ATTTCAGGGCACAGTTATAGCT 57.490 40.909 0.00 0.00 0.00 3.32
1438 1759 1.672881 CAGACATCCGAATTTCAGGGC 59.327 52.381 0.00 0.00 0.00 5.19
1439 1760 1.672881 GCAGACATCCGAATTTCAGGG 59.327 52.381 0.00 0.00 0.00 4.45
1450 1771 7.115378 CACTAAAATTTGAACAAGCAGACATCC 59.885 37.037 0.00 0.00 0.00 3.51
1457 1778 5.606348 ACCCACTAAAATTTGAACAAGCA 57.394 34.783 0.00 0.00 0.00 3.91
1458 1779 9.869757 ATATAACCCACTAAAATTTGAACAAGC 57.130 29.630 0.00 0.00 0.00 4.01
1469 1790 7.722285 GCCATAACCAGATATAACCCACTAAAA 59.278 37.037 0.00 0.00 0.00 1.52
1502 1832 2.653115 GACAAAAGGGGCAGCTGC 59.347 61.111 30.88 30.88 41.14 5.25
1504 1834 2.118294 GGGACAAAAGGGGCAGCT 59.882 61.111 0.00 0.00 0.00 4.24
1505 1835 2.997315 GGGGACAAAAGGGGCAGC 60.997 66.667 0.00 0.00 0.00 5.25
1508 1838 1.000771 GAGAGGGGACAAAAGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
1509 1839 0.777446 TTGAGAGGGGACAAAAGGGG 59.223 55.000 0.00 0.00 0.00 4.79
1510 1840 2.628178 GTTTTGAGAGGGGACAAAAGGG 59.372 50.000 0.00 0.00 43.39 3.95
1556 1886 3.981212 AGGTGGGATTGGGTCAATTTAG 58.019 45.455 0.00 0.00 33.90 1.85
1573 1907 2.552373 GGTTCTGAACAGGGGTTAGGTG 60.552 54.545 21.01 0.00 37.36 4.00
1583 1917 1.528586 CGCAGACTTGGTTCTGAACAG 59.471 52.381 21.01 13.32 45.19 3.16
1604 1938 0.533755 GATATGCAGGAGCCAAGCGT 60.534 55.000 0.00 4.51 41.13 5.07
1609 1943 0.841961 AAGCTGATATGCAGGAGCCA 59.158 50.000 0.00 0.00 45.03 4.75
1611 1945 1.964552 ACAAGCTGATATGCAGGAGC 58.035 50.000 0.00 0.00 45.03 4.70
1644 1979 0.756903 ACACTACTGCCAACCGACTT 59.243 50.000 0.00 0.00 0.00 3.01
1654 1989 3.243301 TGCGTTATAGGCTACACTACTGC 60.243 47.826 0.00 0.00 0.00 4.40
1656 1991 5.346522 GTTTGCGTTATAGGCTACACTACT 58.653 41.667 0.00 0.00 0.00 2.57
1657 1992 4.505556 GGTTTGCGTTATAGGCTACACTAC 59.494 45.833 0.00 0.00 0.00 2.73
1658 1993 4.160065 TGGTTTGCGTTATAGGCTACACTA 59.840 41.667 0.00 0.00 0.00 2.74
1661 1996 3.613494 TGGTTTGCGTTATAGGCTACA 57.387 42.857 0.00 0.00 0.00 2.74
1663 1998 3.472652 CCATGGTTTGCGTTATAGGCTA 58.527 45.455 2.57 0.00 0.00 3.93
1665 2000 1.269051 GCCATGGTTTGCGTTATAGGC 60.269 52.381 14.67 0.00 0.00 3.93
1670 2005 2.785562 AGTAAGCCATGGTTTGCGTTA 58.214 42.857 22.85 0.15 0.00 3.18
1675 2010 4.000988 AGACGTTAGTAAGCCATGGTTTG 58.999 43.478 22.85 8.16 0.00 2.93
1721 2057 2.622942 TCAAGAGGGACACAAACATTGC 59.377 45.455 0.00 0.00 0.00 3.56
1724 2060 2.107204 AGCTCAAGAGGGACACAAACAT 59.893 45.455 0.00 0.00 0.00 2.71
1781 2120 5.048573 GGAAAAACGGCAGGAATGTTAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
1782 2121 4.261867 GGAAAAACGGCAGGAATGTTAGTT 60.262 41.667 0.00 0.00 0.00 2.24
1783 2122 3.254903 GGAAAAACGGCAGGAATGTTAGT 59.745 43.478 0.00 0.00 0.00 2.24
1784 2123 3.506067 AGGAAAAACGGCAGGAATGTTAG 59.494 43.478 0.00 0.00 0.00 2.34
1798 2137 4.821805 TGTTGTCCTGAGATGAGGAAAAAC 59.178 41.667 0.00 0.00 44.04 2.43
1802 2141 2.972021 TGTGTTGTCCTGAGATGAGGAA 59.028 45.455 0.00 0.00 44.04 3.36
1834 2173 3.402681 CATCGTGGCTGGGGAGGT 61.403 66.667 0.00 0.00 0.00 3.85
1903 2245 2.930887 GCTTGATGGCGTGTTCTCTGTA 60.931 50.000 0.00 0.00 0.00 2.74
1918 2260 0.541392 TCGCATACCCACTGCTTGAT 59.459 50.000 0.00 0.00 37.48 2.57
1942 2284 0.473755 ATGAAGCGGTGGCCATATGA 59.526 50.000 9.72 0.00 41.24 2.15
1966 2308 2.682269 GCTTTCTCCAGGGTGATCTTCC 60.682 54.545 0.00 0.00 0.00 3.46
1972 2314 1.371183 CGTGCTTTCTCCAGGGTGA 59.629 57.895 0.00 0.00 0.00 4.02
1973 2315 1.672356 CCGTGCTTTCTCCAGGGTG 60.672 63.158 0.00 0.00 34.44 4.61
1975 2317 2.045926 CCCGTGCTTTCTCCAGGG 60.046 66.667 0.00 0.00 37.84 4.45
1980 2328 1.301677 CTCCTTGCCCGTGCTTTCTC 61.302 60.000 0.00 0.00 38.71 2.87
1983 2331 1.150536 TTCTCCTTGCCCGTGCTTT 59.849 52.632 0.00 0.00 38.71 3.51
1988 2336 1.990160 TTGTGGTTCTCCTTGCCCGT 61.990 55.000 0.00 0.00 34.23 5.28
2062 2410 2.431771 TCGACCATGAACACGCCG 60.432 61.111 0.00 0.00 0.00 6.46
2068 2416 2.171635 GGGCTTGTCGACCATGAAC 58.828 57.895 14.12 0.00 42.15 3.18
2086 2434 2.885644 CTCCAATCCGTCGGCGTG 60.886 66.667 9.28 6.72 36.15 5.34
2243 2591 4.081087 TCCTGTAGATAAGAAAGCCCACAC 60.081 45.833 0.00 0.00 0.00 3.82
2247 2595 3.718815 CGTCCTGTAGATAAGAAAGCCC 58.281 50.000 0.00 0.00 0.00 5.19
2267 2615 2.880822 AAACTGAATCGTCATGTGCG 57.119 45.000 6.19 6.19 31.85 5.34
2268 2616 5.469373 TCATAAACTGAATCGTCATGTGC 57.531 39.130 0.00 0.00 31.85 4.57
2283 2634 6.868339 AGCAAGTGCCAAGTTAAATCATAAAC 59.132 34.615 0.00 0.00 43.38 2.01
2386 2768 8.169268 GTGGACTTCACTAATTCAAATAGTTCG 58.831 37.037 0.00 0.00 42.86 3.95
2449 2831 4.957296 ACTCCACTGTGAAATCTTTACGT 58.043 39.130 9.86 0.00 0.00 3.57
2464 2846 2.127708 AGGTGGTTGAAGAACTCCACT 58.872 47.619 11.93 0.00 46.42 4.00
2530 2912 4.389374 TCAAATTCTCAAGTGTCTCACCC 58.611 43.478 0.00 0.00 34.49 4.61
2576 2958 5.441718 AGACATGAAAGAGGAATAAGCCA 57.558 39.130 0.00 0.00 0.00 4.75
2577 2959 7.865706 TTAAGACATGAAAGAGGAATAAGCC 57.134 36.000 0.00 0.00 0.00 4.35
2578 2960 9.113838 TCATTAAGACATGAAAGAGGAATAAGC 57.886 33.333 0.00 0.00 29.81 3.09
2602 2984 6.892658 AACAAAAAGGCATATGTACAGTCA 57.107 33.333 0.33 0.00 0.00 3.41
2626 3008 6.000840 GGGAATAAACCATCAAAGGCAAAAA 58.999 36.000 0.00 0.00 0.00 1.94
2627 3009 5.513962 GGGGAATAAACCATCAAAGGCAAAA 60.514 40.000 0.00 0.00 0.00 2.44
2628 3010 4.019771 GGGGAATAAACCATCAAAGGCAAA 60.020 41.667 0.00 0.00 0.00 3.68
2642 3024 4.478317 ACATGACATCAGGAGGGGAATAAA 59.522 41.667 0.00 0.00 0.00 1.40
2677 3059 4.233005 GACTGTCCTAACCGACACTTTAC 58.767 47.826 0.00 0.00 37.85 2.01
2678 3060 3.058016 CGACTGTCCTAACCGACACTTTA 60.058 47.826 1.55 0.00 37.85 1.85
2725 3107 3.731431 ACCAGGGACATAATGACCTGTA 58.269 45.455 16.30 0.00 41.17 2.74
2730 3112 4.780815 TGATGAACCAGGGACATAATGAC 58.219 43.478 0.00 0.00 0.00 3.06
2736 3118 5.336102 AGAAAAATGATGAACCAGGGACAT 58.664 37.500 0.00 0.00 0.00 3.06
2738 3120 4.142600 CGAGAAAAATGATGAACCAGGGAC 60.143 45.833 0.00 0.00 0.00 4.46
2855 3237 3.568007 AGCTTTAGTTCCGCAACATTCAA 59.432 39.130 0.00 0.00 34.60 2.69
2896 3278 2.743928 GCAGCGTCCACTGAAGGG 60.744 66.667 0.00 0.00 40.25 3.95
2986 3368 2.633509 GCCCTTTGCAGCTGACCAG 61.634 63.158 20.43 8.69 40.77 4.00
3101 3483 0.719465 GCACAACGTTGGTAGATCCG 59.281 55.000 30.34 10.21 39.52 4.18
3114 3496 2.514205 ATGTCTTTTGCCTGCACAAC 57.486 45.000 0.00 0.00 0.00 3.32
3117 3499 4.178545 ACATTATGTCTTTTGCCTGCAC 57.821 40.909 0.00 0.00 0.00 4.57
3176 3558 2.619849 CCTGATGTCCTTTGGCATCTGT 60.620 50.000 8.43 0.00 41.33 3.41
3179 3561 2.425143 TCCTGATGTCCTTTGGCATC 57.575 50.000 0.34 0.34 41.19 3.91
3284 3666 2.440539 ATGTATCGACATTCTCGCCC 57.559 50.000 0.00 0.00 44.18 6.13
3343 3730 2.223923 CGGCCTGGAGATTACAGAAGAG 60.224 54.545 0.00 0.00 38.20 2.85
3345 3732 1.757118 TCGGCCTGGAGATTACAGAAG 59.243 52.381 0.00 0.00 38.20 2.85
3348 3735 2.874701 CAAATCGGCCTGGAGATTACAG 59.125 50.000 15.08 7.60 36.20 2.74
3360 3747 1.676006 CCAGGTTATGTCAAATCGGCC 59.324 52.381 0.00 0.00 0.00 6.13
3361 3748 2.097466 CACCAGGTTATGTCAAATCGGC 59.903 50.000 0.00 0.00 0.00 5.54
3424 3811 7.309920 TGCTGCTGTAATATGCATCAATTATG 58.690 34.615 0.19 2.24 38.59 1.90
3430 3817 3.143728 CCTGCTGCTGTAATATGCATCA 58.856 45.455 0.19 0.00 38.59 3.07
3566 3953 1.003580 TGAGACCACCATCTTTCTGGC 59.996 52.381 0.00 0.00 40.15 4.85
3567 3954 2.704572 GTGAGACCACCATCTTTCTGG 58.295 52.381 0.00 0.00 42.35 3.86
3588 3976 1.409064 TGTAGCGCAATCACTAGGAGG 59.591 52.381 11.47 0.00 0.00 4.30
3796 4190 1.560146 GGGAGGTTTGAGGGAGTAAGG 59.440 57.143 0.00 0.00 0.00 2.69
3808 4202 9.860393 ACTATCTAATTATCTATGGGGAGGTTT 57.140 33.333 0.00 0.00 0.00 3.27
3842 4236 6.047870 CCTCTTCATATTTCTGTCTGACCAG 58.952 44.000 5.17 3.40 0.00 4.00
3843 4237 5.721480 TCCTCTTCATATTTCTGTCTGACCA 59.279 40.000 5.17 0.00 0.00 4.02
3844 4238 6.045955 GTCCTCTTCATATTTCTGTCTGACC 58.954 44.000 5.17 0.00 0.00 4.02
3845 4239 6.533367 GTGTCCTCTTCATATTTCTGTCTGAC 59.467 42.308 0.00 0.00 0.00 3.51
3846 4240 6.438741 AGTGTCCTCTTCATATTTCTGTCTGA 59.561 38.462 0.00 0.00 0.00 3.27
3848 4242 6.438741 TCAGTGTCCTCTTCATATTTCTGTCT 59.561 38.462 0.00 0.00 0.00 3.41
3849 4243 6.634805 TCAGTGTCCTCTTCATATTTCTGTC 58.365 40.000 0.00 0.00 0.00 3.51
3850 4244 6.438741 TCTCAGTGTCCTCTTCATATTTCTGT 59.561 38.462 0.00 0.00 0.00 3.41
3851 4245 6.871844 TCTCAGTGTCCTCTTCATATTTCTG 58.128 40.000 0.00 0.00 0.00 3.02
3852 4246 6.894654 TCTCTCAGTGTCCTCTTCATATTTCT 59.105 38.462 0.00 0.00 0.00 2.52
3853 4247 7.106439 TCTCTCAGTGTCCTCTTCATATTTC 57.894 40.000 0.00 0.00 0.00 2.17
3854 4248 7.487822 TTCTCTCAGTGTCCTCTTCATATTT 57.512 36.000 0.00 0.00 0.00 1.40
3858 4259 5.068987 GCTATTCTCTCAGTGTCCTCTTCAT 59.931 44.000 0.00 0.00 0.00 2.57
3933 4335 5.105797 TGACAGTTCAAGTTTGTGCAGAAAT 60.106 36.000 12.62 0.00 0.00 2.17
3940 4342 3.440173 ACCAGTGACAGTTCAAGTTTGTG 59.560 43.478 0.00 0.00 31.90 3.33
3941 4343 3.686016 ACCAGTGACAGTTCAAGTTTGT 58.314 40.909 0.00 0.00 31.90 2.83
3963 4365 6.639686 CCTTCAAATTCACTTTCATGTCACTG 59.360 38.462 0.00 0.00 0.00 3.66
3972 4374 6.918022 ACGAAATCACCTTCAAATTCACTTTC 59.082 34.615 0.00 0.00 0.00 2.62
3990 4396 3.372954 ACTAGCAGCGATACACGAAATC 58.627 45.455 0.00 0.00 45.77 2.17
3995 4401 3.885358 TGATAACTAGCAGCGATACACG 58.115 45.455 0.00 0.00 45.66 4.49
3999 4405 5.515797 ACTGTTGATAACTAGCAGCGATA 57.484 39.130 0.00 0.00 0.00 2.92
4002 4408 7.084486 TGATATACTGTTGATAACTAGCAGCG 58.916 38.462 0.00 0.00 0.00 5.18
4022 4428 3.513680 TCACCGTAACGCAACTGATAT 57.486 42.857 0.00 0.00 0.00 1.63
4028 4434 0.584876 AAGCTTCACCGTAACGCAAC 59.415 50.000 0.00 0.00 0.00 4.17
4031 4437 2.064014 ACTTAAGCTTCACCGTAACGC 58.936 47.619 0.00 0.00 0.00 4.84
4035 4441 4.859304 TCAGAACTTAAGCTTCACCGTA 57.141 40.909 0.00 0.00 0.00 4.02
4037 4443 5.409826 AGATTTCAGAACTTAAGCTTCACCG 59.590 40.000 0.00 0.00 0.00 4.94
4042 4448 5.182760 CAGGCAGATTTCAGAACTTAAGCTT 59.817 40.000 3.48 3.48 0.00 3.74
4045 4451 6.808008 TTCAGGCAGATTTCAGAACTTAAG 57.192 37.500 0.00 0.00 0.00 1.85
4047 4453 7.448161 TGATTTTCAGGCAGATTTCAGAACTTA 59.552 33.333 0.00 0.00 0.00 2.24
4053 4459 5.348986 CCATGATTTTCAGGCAGATTTCAG 58.651 41.667 0.00 0.00 0.00 3.02
4054 4460 4.382254 GCCATGATTTTCAGGCAGATTTCA 60.382 41.667 0.00 0.00 39.14 2.69
4067 4491 3.726557 TCTCTCACCTGCCATGATTTT 57.273 42.857 0.00 0.00 0.00 1.82
4090 4516 9.184523 TCCAAAAGGTACATAATTAAGATGTGG 57.815 33.333 13.50 6.67 38.03 4.17
4124 4550 8.950210 GCAGCTAACATATAACCAACATATGAT 58.050 33.333 10.38 0.00 38.21 2.45
4134 4560 6.591834 CCTGTATCAGCAGCTAACATATAACC 59.408 42.308 0.00 0.00 35.28 2.85
4172 4682 4.383173 TCATGCAACATCAGCTACTATGG 58.617 43.478 0.00 0.00 0.00 2.74
4232 4761 7.086685 ACATTCTAAGACCAAGAAACCCTTA 57.913 36.000 0.00 0.00 36.60 2.69
4258 4787 2.044492 ACACATAGAAGTCTGGGGAGGA 59.956 50.000 0.00 0.00 0.00 3.71
4300 4831 3.920112 CGATGTTTCGCTAACCCTAAC 57.080 47.619 0.00 0.00 38.75 2.34
4321 4856 1.298157 ATGCATGGTCAACACGACGG 61.298 55.000 0.00 0.00 46.42 4.79
4328 4863 5.673337 ATTGTACGATATGCATGGTCAAC 57.327 39.130 10.16 8.94 0.00 3.18
4449 4987 2.062971 ATGATGTTGAGGCCACATCC 57.937 50.000 24.46 11.47 39.42 3.51
4509 5052 9.139174 CAATGTTTGAACTTGTGTAGTCTTTTT 57.861 29.630 0.00 0.00 35.54 1.94
4510 5053 8.303876 ACAATGTTTGAACTTGTGTAGTCTTTT 58.696 29.630 9.37 0.00 35.54 2.27
4511 5054 7.754924 CACAATGTTTGAACTTGTGTAGTCTTT 59.245 33.333 19.53 0.00 39.87 2.52
4512 5055 7.094377 ACACAATGTTTGAACTTGTGTAGTCTT 60.094 33.333 25.56 12.51 46.59 3.01
4513 5056 6.374333 ACACAATGTTTGAACTTGTGTAGTCT 59.626 34.615 25.56 12.93 46.59 3.24
4514 5057 6.551736 ACACAATGTTTGAACTTGTGTAGTC 58.448 36.000 25.56 0.00 46.59 2.59
4515 5058 6.509418 ACACAATGTTTGAACTTGTGTAGT 57.491 33.333 25.56 13.36 46.59 2.73
4519 5062 6.949578 AAGAACACAATGTTTGAACTTGTG 57.050 33.333 22.74 22.74 41.28 3.33
4520 5063 6.307800 CGAAAGAACACAATGTTTGAACTTGT 59.692 34.615 0.00 1.78 41.28 3.16
4521 5064 6.237542 CCGAAAGAACACAATGTTTGAACTTG 60.238 38.462 0.00 1.25 41.28 3.16
4522 5065 5.804979 CCGAAAGAACACAATGTTTGAACTT 59.195 36.000 0.00 0.00 41.28 2.66
4523 5066 5.105917 ACCGAAAGAACACAATGTTTGAACT 60.106 36.000 0.00 0.00 41.28 3.01
4524 5067 5.099575 ACCGAAAGAACACAATGTTTGAAC 58.900 37.500 0.00 0.00 41.28 3.18
4525 5068 5.317733 ACCGAAAGAACACAATGTTTGAA 57.682 34.783 0.00 0.00 41.28 2.69
4526 5069 4.974368 ACCGAAAGAACACAATGTTTGA 57.026 36.364 0.00 0.00 41.28 2.69
4527 5070 6.732181 CTAACCGAAAGAACACAATGTTTG 57.268 37.500 0.00 0.00 41.28 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.