Multiple sequence alignment - TraesCS1D01G003700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G003700 chr1D 100.000 2780 0 0 1 2780 2065389 2068168 0.000000e+00 5134.0
1 TraesCS1D01G003700 chr1D 95.146 206 10 0 1542 1747 2511317 2511522 2.670000e-85 326.0
2 TraesCS1D01G003700 chr1A 86.111 756 57 16 1 721 1106872 1107614 0.000000e+00 771.0
3 TraesCS1D01G003700 chr1A 86.111 756 57 16 1 721 1112715 1113457 0.000000e+00 771.0
4 TraesCS1D01G003700 chr1A 85.884 758 54 22 1 721 1118547 1119288 0.000000e+00 758.0
5 TraesCS1D01G003700 chr1A 85.469 757 60 19 1 721 1100833 1101575 0.000000e+00 743.0
6 TraesCS1D01G003700 chr1A 93.541 449 12 5 1476 1917 1145287 1145725 0.000000e+00 652.0
7 TraesCS1D01G003700 chr1A 78.754 353 22 20 882 1212 1144352 1144673 1.310000e-43 187.0
8 TraesCS1D01G003700 chr1A 93.860 114 2 1 1975 2088 1145841 1145949 1.710000e-37 167.0
9 TraesCS1D01G003700 chr1A 86.861 137 5 7 2229 2352 1146164 1146300 1.040000e-29 141.0
10 TraesCS1D01G003700 chr1B 92.145 331 17 6 1457 1784 1199201 1199525 2.520000e-125 459.0
11 TraesCS1D01G003700 chr1B 88.034 234 3 7 992 1224 1198848 1199057 1.280000e-63 254.0
12 TraesCS1D01G003700 chr1B 89.447 199 14 3 2419 2611 1200348 1200545 7.690000e-61 244.0
13 TraesCS1D01G003700 chr1B 89.103 156 11 4 2229 2378 1200197 1200352 3.660000e-44 189.0
14 TraesCS1D01G003700 chr1B 89.474 57 5 1 2613 2669 1200569 1200624 1.380000e-08 71.3
15 TraesCS1D01G003700 chr7B 90.535 243 20 3 1541 1780 714294799 714295041 4.470000e-83 318.0
16 TraesCS1D01G003700 chr3D 85.930 199 20 7 24 218 390568244 390568438 3.630000e-49 206.0
17 TraesCS1D01G003700 chr6D 85.500 200 20 7 24 218 175085449 175085254 1.690000e-47 200.0
18 TraesCS1D01G003700 chr5D 81.855 248 34 10 24 266 287834383 287834624 6.070000e-47 198.0
19 TraesCS1D01G003700 chr5B 81.048 248 34 10 24 266 218871501 218871740 4.730000e-43 185.0
20 TraesCS1D01G003700 chr6B 80.972 247 34 11 26 266 447630652 447630891 1.700000e-42 183.0
21 TraesCS1D01G003700 chr6B 93.684 95 6 0 172 266 301057171 301057265 2.890000e-30 143.0
22 TraesCS1D01G003700 chr2D 93.684 95 6 0 172 266 286768367 286768273 2.890000e-30 143.0
23 TraesCS1D01G003700 chr2B 81.579 76 10 4 737 812 59043228 59043157 2.990000e-05 60.2
24 TraesCS1D01G003700 chr2B 88.000 50 4 2 772 821 513679395 513679348 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G003700 chr1D 2065389 2068168 2779 False 5134.00 5134 100.0000 1 2780 1 chr1D.!!$F1 2779
1 TraesCS1D01G003700 chr1A 1106872 1107614 742 False 771.00 771 86.1110 1 721 1 chr1A.!!$F2 720
2 TraesCS1D01G003700 chr1A 1112715 1113457 742 False 771.00 771 86.1110 1 721 1 chr1A.!!$F3 720
3 TraesCS1D01G003700 chr1A 1118547 1119288 741 False 758.00 758 85.8840 1 721 1 chr1A.!!$F4 720
4 TraesCS1D01G003700 chr1A 1100833 1101575 742 False 743.00 743 85.4690 1 721 1 chr1A.!!$F1 720
5 TraesCS1D01G003700 chr1A 1144352 1146300 1948 False 286.75 652 88.2540 882 2352 4 chr1A.!!$F5 1470
6 TraesCS1D01G003700 chr1B 1198848 1200624 1776 False 243.46 459 89.6406 992 2669 5 chr1B.!!$F1 1677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 909 0.105039 GATTGGGCTAGGGTCACTCG 59.895 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2723 0.031716 TCAGCCCAGAGTAGCCTGAT 60.032 55.0 0.0 0.0 36.29 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.053048 CGCTCAACGCCTATGTATCG 58.947 55.000 0.00 0.00 34.21 2.92
22 23 2.470821 GCTCAACGCCTATGTATCGTT 58.529 47.619 0.00 0.00 45.77 3.85
52 53 3.513438 GCGTGTGTTGTGGTGGCA 61.513 61.111 0.00 0.00 0.00 4.92
82 83 1.586154 CTGGGTTGTTGGGATCGTGC 61.586 60.000 0.00 0.00 0.00 5.34
126 127 7.623297 GCAAAAGCCTTTTTCGGTAATATTTGG 60.623 37.037 0.00 0.00 34.34 3.28
127 128 6.599356 AAGCCTTTTTCGGTAATATTTGGT 57.401 33.333 0.00 0.00 0.00 3.67
208 209 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
232 233 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
263 264 8.961294 AGACAAATATTTGAGAATGGAGAGAG 57.039 34.615 30.18 3.44 40.55 3.20
353 354 0.774491 ATTACACACCCCACCACCCT 60.774 55.000 0.00 0.00 0.00 4.34
394 415 1.150827 TTCGTCTGTCGTCGAAGCTA 58.849 50.000 0.00 0.00 40.34 3.32
397 418 0.520827 GTCTGTCGTCGAAGCTACCG 60.521 60.000 0.00 2.38 0.00 4.02
398 419 1.868251 CTGTCGTCGAAGCTACCGC 60.868 63.158 0.00 0.00 0.00 5.68
417 438 8.129211 GCTACCGCTAAATTTGAAGTAAATGAT 58.871 33.333 0.00 0.00 38.93 2.45
418 439 9.438291 CTACCGCTAAATTTGAAGTAAATGATG 57.562 33.333 0.00 0.00 38.93 3.07
419 440 8.050778 ACCGCTAAATTTGAAGTAAATGATGA 57.949 30.769 0.00 0.00 38.93 2.92
420 441 8.686334 ACCGCTAAATTTGAAGTAAATGATGAT 58.314 29.630 0.00 0.00 38.93 2.45
443 464 2.329614 CCCGCCACCCGTAAAAGTG 61.330 63.158 0.00 0.00 34.38 3.16
444 465 1.301874 CCGCCACCCGTAAAAGTGA 60.302 57.895 0.00 0.00 36.01 3.41
445 466 0.885596 CCGCCACCCGTAAAAGTGAA 60.886 55.000 0.00 0.00 36.01 3.18
446 467 0.515564 CGCCACCCGTAAAAGTGAAG 59.484 55.000 0.00 0.00 36.01 3.02
478 499 4.600111 ACTAGTGTTCCCCCTAATTGTTCA 59.400 41.667 0.00 0.00 0.00 3.18
499 520 9.569074 TGTTCATATATTATAGGGCCCTCTAAA 57.431 33.333 32.80 21.37 0.00 1.85
565 602 6.980593 ACTATGAGATTAGTGCTTCTGCTAG 58.019 40.000 0.00 0.00 40.48 3.42
566 603 5.867903 ATGAGATTAGTGCTTCTGCTAGT 57.132 39.130 0.00 0.00 40.48 2.57
567 604 5.667539 TGAGATTAGTGCTTCTGCTAGTT 57.332 39.130 0.00 0.00 40.48 2.24
571 608 6.648192 AGATTAGTGCTTCTGCTAGTTCATT 58.352 36.000 0.00 0.00 40.48 2.57
587 625 6.952935 AGTTCATTGCACGTTTTACAAAAA 57.047 29.167 0.00 0.00 0.00 1.94
632 670 1.401905 CTCGCAATCCAGGTTTTAGGC 59.598 52.381 0.00 0.00 0.00 3.93
638 676 2.413310 TCCAGGTTTTAGGCGGATTC 57.587 50.000 0.00 0.00 0.00 2.52
640 678 2.307686 TCCAGGTTTTAGGCGGATTCTT 59.692 45.455 0.00 0.00 0.00 2.52
646 684 4.556233 GTTTTAGGCGGATTCTTGCTTTT 58.444 39.130 0.00 0.00 0.00 2.27
648 686 4.957759 TTAGGCGGATTCTTGCTTTTAC 57.042 40.909 0.00 0.00 0.00 2.01
655 693 5.117135 GCGGATTCTTGCTTTTACAGAAAAC 59.883 40.000 0.00 0.00 31.23 2.43
661 699 2.962421 TGCTTTTACAGAAAACCCCCTG 59.038 45.455 0.00 0.00 36.53 4.45
679 717 4.321230 CCCCTGTTGTTTCTGCTAATCAAC 60.321 45.833 14.35 14.35 38.82 3.18
681 719 4.466828 CTGTTGTTTCTGCTAATCAACCG 58.533 43.478 16.69 10.80 37.96 4.44
699 737 4.281898 ACCGGCAGTCAAGTATTAAGTT 57.718 40.909 0.00 0.00 0.00 2.66
729 767 4.454728 GCTTTTGCATAAACCCATCAGA 57.545 40.909 0.00 0.00 46.58 3.27
730 768 4.427312 GCTTTTGCATAAACCCATCAGAG 58.573 43.478 0.00 0.00 46.58 3.35
731 769 4.082026 GCTTTTGCATAAACCCATCAGAGT 60.082 41.667 0.00 0.00 46.58 3.24
732 770 5.643379 TTTTGCATAAACCCATCAGAGTC 57.357 39.130 0.00 0.00 0.00 3.36
733 771 4.574674 TTGCATAAACCCATCAGAGTCT 57.425 40.909 0.00 0.00 0.00 3.24
734 772 4.574674 TGCATAAACCCATCAGAGTCTT 57.425 40.909 0.00 0.00 0.00 3.01
735 773 5.692115 TGCATAAACCCATCAGAGTCTTA 57.308 39.130 0.00 0.00 0.00 2.10
736 774 6.061022 TGCATAAACCCATCAGAGTCTTAA 57.939 37.500 0.00 0.00 0.00 1.85
737 775 6.662755 TGCATAAACCCATCAGAGTCTTAAT 58.337 36.000 0.00 0.00 0.00 1.40
738 776 7.118723 TGCATAAACCCATCAGAGTCTTAATT 58.881 34.615 0.00 0.00 0.00 1.40
739 777 7.283127 TGCATAAACCCATCAGAGTCTTAATTC 59.717 37.037 0.00 0.00 0.00 2.17
740 778 7.283127 GCATAAACCCATCAGAGTCTTAATTCA 59.717 37.037 0.00 0.00 0.00 2.57
741 779 9.347240 CATAAACCCATCAGAGTCTTAATTCAT 57.653 33.333 0.00 0.00 0.00 2.57
742 780 7.636150 AAACCCATCAGAGTCTTAATTCATG 57.364 36.000 0.00 0.00 0.00 3.07
743 781 6.566079 ACCCATCAGAGTCTTAATTCATGA 57.434 37.500 0.00 0.00 0.00 3.07
744 782 7.146715 ACCCATCAGAGTCTTAATTCATGAT 57.853 36.000 0.00 0.00 0.00 2.45
745 783 7.580910 ACCCATCAGAGTCTTAATTCATGATT 58.419 34.615 0.00 0.00 0.00 2.57
746 784 8.717717 ACCCATCAGAGTCTTAATTCATGATTA 58.282 33.333 0.00 0.00 0.00 1.75
747 785 9.736414 CCCATCAGAGTCTTAATTCATGATTAT 57.264 33.333 0.00 0.00 30.56 1.28
751 789 9.565090 TCAGAGTCTTAATTCATGATTATTGGG 57.435 33.333 0.00 0.00 30.56 4.12
752 790 9.347240 CAGAGTCTTAATTCATGATTATTGGGT 57.653 33.333 0.00 0.00 30.56 4.51
753 791 9.927081 AGAGTCTTAATTCATGATTATTGGGTT 57.073 29.630 0.00 0.00 30.56 4.11
757 795 9.586732 TCTTAATTCATGATTATTGGGTTAGGG 57.413 33.333 0.00 0.00 30.56 3.53
758 796 8.719645 TTAATTCATGATTATTGGGTTAGGGG 57.280 34.615 0.00 0.00 30.56 4.79
759 797 4.112634 TCATGATTATTGGGTTAGGGGC 57.887 45.455 0.00 0.00 0.00 5.80
760 798 2.649531 TGATTATTGGGTTAGGGGCG 57.350 50.000 0.00 0.00 0.00 6.13
761 799 1.244816 GATTATTGGGTTAGGGGCGC 58.755 55.000 0.00 0.00 0.00 6.53
762 800 0.536460 ATTATTGGGTTAGGGGCGCG 60.536 55.000 0.00 0.00 0.00 6.86
763 801 1.912826 TTATTGGGTTAGGGGCGCGT 61.913 55.000 8.43 0.47 0.00 6.01
764 802 2.596553 TATTGGGTTAGGGGCGCGTG 62.597 60.000 8.43 0.00 0.00 5.34
766 804 4.171103 GGGTTAGGGGCGCGTGAT 62.171 66.667 8.43 0.00 0.00 3.06
767 805 2.799452 GGGTTAGGGGCGCGTGATA 61.799 63.158 8.43 0.00 0.00 2.15
768 806 1.370064 GGTTAGGGGCGCGTGATAT 59.630 57.895 8.43 0.00 0.00 1.63
769 807 0.949105 GGTTAGGGGCGCGTGATATG 60.949 60.000 8.43 0.00 0.00 1.78
770 808 0.949105 GTTAGGGGCGCGTGATATGG 60.949 60.000 8.43 0.00 0.00 2.74
771 809 1.404479 TTAGGGGCGCGTGATATGGT 61.404 55.000 8.43 0.00 0.00 3.55
772 810 1.404479 TAGGGGCGCGTGATATGGTT 61.404 55.000 8.43 0.00 0.00 3.67
773 811 1.822186 GGGGCGCGTGATATGGTTT 60.822 57.895 8.43 0.00 0.00 3.27
774 812 1.381165 GGGGCGCGTGATATGGTTTT 61.381 55.000 8.43 0.00 0.00 2.43
775 813 0.454196 GGGCGCGTGATATGGTTTTT 59.546 50.000 8.43 0.00 0.00 1.94
776 814 1.533129 GGGCGCGTGATATGGTTTTTC 60.533 52.381 8.43 0.00 0.00 2.29
777 815 1.400494 GGCGCGTGATATGGTTTTTCT 59.600 47.619 8.43 0.00 0.00 2.52
778 816 2.159435 GGCGCGTGATATGGTTTTTCTT 60.159 45.455 8.43 0.00 0.00 2.52
779 817 3.098636 GCGCGTGATATGGTTTTTCTTC 58.901 45.455 8.43 0.00 0.00 2.87
780 818 3.680789 CGCGTGATATGGTTTTTCTTCC 58.319 45.455 0.00 0.00 0.00 3.46
781 819 3.680789 GCGTGATATGGTTTTTCTTCCG 58.319 45.455 0.00 0.00 0.00 4.30
782 820 3.126343 GCGTGATATGGTTTTTCTTCCGT 59.874 43.478 0.00 0.00 0.00 4.69
783 821 4.379082 GCGTGATATGGTTTTTCTTCCGTT 60.379 41.667 0.00 0.00 0.00 4.44
784 822 5.086058 CGTGATATGGTTTTTCTTCCGTTG 58.914 41.667 0.00 0.00 0.00 4.10
785 823 4.857037 GTGATATGGTTTTTCTTCCGTTGC 59.143 41.667 0.00 0.00 0.00 4.17
786 824 4.520874 TGATATGGTTTTTCTTCCGTTGCA 59.479 37.500 0.00 0.00 0.00 4.08
787 825 3.810310 ATGGTTTTTCTTCCGTTGCAA 57.190 38.095 0.00 0.00 0.00 4.08
788 826 2.882324 TGGTTTTTCTTCCGTTGCAAC 58.118 42.857 19.89 19.89 0.00 4.17
797 835 3.952675 CGTTGCAACGCACAGGCT 61.953 61.111 35.89 0.00 46.06 4.58
798 836 2.050985 GTTGCAACGCACAGGCTC 60.051 61.111 14.90 0.00 38.71 4.70
799 837 2.203195 TTGCAACGCACAGGCTCT 60.203 55.556 0.00 0.00 38.71 4.09
800 838 1.823470 TTGCAACGCACAGGCTCTT 60.823 52.632 0.00 0.00 38.71 2.85
801 839 1.785041 TTGCAACGCACAGGCTCTTC 61.785 55.000 0.00 0.00 38.71 2.87
802 840 1.963338 GCAACGCACAGGCTCTTCT 60.963 57.895 0.00 0.00 38.10 2.85
803 841 1.510480 GCAACGCACAGGCTCTTCTT 61.510 55.000 0.00 0.00 38.10 2.52
804 842 0.236711 CAACGCACAGGCTCTTCTTG 59.763 55.000 0.00 0.00 38.10 3.02
805 843 0.886490 AACGCACAGGCTCTTCTTGG 60.886 55.000 0.00 0.00 38.10 3.61
806 844 2.684843 CGCACAGGCTCTTCTTGGC 61.685 63.158 0.00 0.00 38.10 4.52
807 845 1.303155 GCACAGGCTCTTCTTGGCT 60.303 57.895 0.00 0.00 41.11 4.75
810 848 3.913107 AGGCTCTTCTTGGCTGGT 58.087 55.556 0.00 0.00 38.92 4.00
811 849 3.088923 AGGCTCTTCTTGGCTGGTA 57.911 52.632 0.00 0.00 38.92 3.25
812 850 0.908198 AGGCTCTTCTTGGCTGGTAG 59.092 55.000 0.00 0.00 38.92 3.18
813 851 0.905357 GGCTCTTCTTGGCTGGTAGA 59.095 55.000 0.00 0.00 0.00 2.59
814 852 1.279271 GGCTCTTCTTGGCTGGTAGAA 59.721 52.381 0.00 0.00 0.00 2.10
815 853 2.351455 GCTCTTCTTGGCTGGTAGAAC 58.649 52.381 0.00 0.00 0.00 3.01
816 854 2.027653 GCTCTTCTTGGCTGGTAGAACT 60.028 50.000 0.00 0.00 0.00 3.01
817 855 3.855858 CTCTTCTTGGCTGGTAGAACTC 58.144 50.000 0.00 0.00 0.00 3.01
818 856 3.239449 TCTTCTTGGCTGGTAGAACTCA 58.761 45.455 0.00 0.00 0.00 3.41
819 857 3.646162 TCTTCTTGGCTGGTAGAACTCAA 59.354 43.478 0.00 0.00 0.00 3.02
820 858 3.402628 TCTTGGCTGGTAGAACTCAAC 57.597 47.619 0.00 0.00 0.00 3.18
821 859 2.703536 TCTTGGCTGGTAGAACTCAACA 59.296 45.455 0.00 0.00 0.00 3.33
822 860 3.135712 TCTTGGCTGGTAGAACTCAACAA 59.864 43.478 0.00 0.00 0.00 2.83
823 861 3.126001 TGGCTGGTAGAACTCAACAAG 57.874 47.619 0.00 0.00 0.00 3.16
824 862 2.438021 TGGCTGGTAGAACTCAACAAGT 59.562 45.455 0.00 0.00 41.10 3.16
835 873 5.705609 AACTCAACAAGTTCACAAGTGTT 57.294 34.783 0.00 0.00 45.28 3.32
836 874 5.046910 ACTCAACAAGTTCACAAGTGTTG 57.953 39.130 8.68 8.68 33.03 3.33
837 875 4.082787 ACTCAACAAGTTCACAAGTGTTGG 60.083 41.667 13.64 8.28 37.71 3.77
838 876 3.192422 TCAACAAGTTCACAAGTGTTGGG 59.808 43.478 13.64 0.00 37.71 4.12
839 877 1.476488 ACAAGTTCACAAGTGTTGGGC 59.524 47.619 0.00 0.00 32.92 5.36
840 878 1.750778 CAAGTTCACAAGTGTTGGGCT 59.249 47.619 0.00 0.00 32.92 5.19
841 879 1.392589 AGTTCACAAGTGTTGGGCTG 58.607 50.000 0.00 0.00 32.92 4.85
842 880 0.249031 GTTCACAAGTGTTGGGCTGC 60.249 55.000 0.00 0.00 32.92 5.25
843 881 1.723608 TTCACAAGTGTTGGGCTGCG 61.724 55.000 0.00 0.00 32.92 5.18
844 882 3.595758 ACAAGTGTTGGGCTGCGC 61.596 61.111 10.06 10.06 34.12 6.09
845 883 3.594775 CAAGTGTTGGGCTGCGCA 61.595 61.111 15.90 15.90 0.00 6.09
846 884 3.289834 AAGTGTTGGGCTGCGCAG 61.290 61.111 32.83 32.83 0.00 5.18
847 885 3.772853 AAGTGTTGGGCTGCGCAGA 62.773 57.895 40.21 17.93 0.00 4.26
848 886 3.730761 GTGTTGGGCTGCGCAGAG 61.731 66.667 40.21 17.53 0.00 3.35
849 887 4.254709 TGTTGGGCTGCGCAGAGT 62.255 61.111 40.21 0.00 0.00 3.24
850 888 3.730761 GTTGGGCTGCGCAGAGTG 61.731 66.667 40.21 16.28 0.00 3.51
854 892 4.479993 GGCTGCGCAGAGTGGGAT 62.480 66.667 40.21 0.00 31.21 3.85
855 893 2.437359 GCTGCGCAGAGTGGGATT 60.437 61.111 40.21 0.00 31.21 3.01
856 894 2.758089 GCTGCGCAGAGTGGGATTG 61.758 63.158 40.21 11.77 31.21 2.67
857 895 2.046023 TGCGCAGAGTGGGATTGG 60.046 61.111 5.66 0.00 31.21 3.16
858 896 2.825836 GCGCAGAGTGGGATTGGG 60.826 66.667 0.30 0.00 31.21 4.12
859 897 2.825836 CGCAGAGTGGGATTGGGC 60.826 66.667 0.00 0.00 31.21 5.36
860 898 2.679716 GCAGAGTGGGATTGGGCT 59.320 61.111 0.00 0.00 0.00 5.19
861 899 1.915228 GCAGAGTGGGATTGGGCTA 59.085 57.895 0.00 0.00 0.00 3.93
862 900 0.179034 GCAGAGTGGGATTGGGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
863 901 0.471617 CAGAGTGGGATTGGGCTAGG 59.528 60.000 0.00 0.00 0.00 3.02
864 902 0.695803 AGAGTGGGATTGGGCTAGGG 60.696 60.000 0.00 0.00 0.00 3.53
865 903 0.988678 GAGTGGGATTGGGCTAGGGT 60.989 60.000 0.00 0.00 0.00 4.34
866 904 0.988678 AGTGGGATTGGGCTAGGGTC 60.989 60.000 0.00 0.00 0.00 4.46
867 905 1.083895 TGGGATTGGGCTAGGGTCA 59.916 57.895 0.00 0.00 0.00 4.02
868 906 1.279025 TGGGATTGGGCTAGGGTCAC 61.279 60.000 0.00 0.00 0.00 3.67
869 907 0.988678 GGGATTGGGCTAGGGTCACT 60.989 60.000 0.00 0.00 0.00 3.41
870 908 0.470341 GGATTGGGCTAGGGTCACTC 59.530 60.000 0.00 0.00 0.00 3.51
871 909 0.105039 GATTGGGCTAGGGTCACTCG 59.895 60.000 0.00 0.00 0.00 4.18
872 910 1.972660 ATTGGGCTAGGGTCACTCGC 61.973 60.000 0.00 0.00 37.18 5.03
873 911 4.208686 GGGCTAGGGTCACTCGCG 62.209 72.222 0.00 0.00 38.69 5.87
874 912 4.208686 GGCTAGGGTCACTCGCGG 62.209 72.222 6.13 0.00 38.69 6.46
875 913 4.208686 GCTAGGGTCACTCGCGGG 62.209 72.222 3.27 3.27 0.00 6.13
876 914 4.208686 CTAGGGTCACTCGCGGGC 62.209 72.222 5.51 0.00 0.00 6.13
877 915 4.753662 TAGGGTCACTCGCGGGCT 62.754 66.667 5.51 0.00 0.00 5.19
907 945 1.530323 GCCCGCCTTGTTTCTTCTTA 58.470 50.000 0.00 0.00 0.00 2.10
909 947 2.097629 GCCCGCCTTGTTTCTTCTTATC 59.902 50.000 0.00 0.00 0.00 1.75
910 948 2.683362 CCCGCCTTGTTTCTTCTTATCC 59.317 50.000 0.00 0.00 0.00 2.59
919 957 4.717280 TGTTTCTTCTTATCCTCCTCCTCC 59.283 45.833 0.00 0.00 0.00 4.30
920 958 4.909355 TTCTTCTTATCCTCCTCCTCCT 57.091 45.455 0.00 0.00 0.00 3.69
921 959 4.463050 TCTTCTTATCCTCCTCCTCCTC 57.537 50.000 0.00 0.00 0.00 3.71
922 960 3.141272 TCTTCTTATCCTCCTCCTCCTCC 59.859 52.174 0.00 0.00 0.00 4.30
923 961 2.808355 TCTTATCCTCCTCCTCCTCCT 58.192 52.381 0.00 0.00 0.00 3.69
924 962 2.719705 TCTTATCCTCCTCCTCCTCCTC 59.280 54.545 0.00 0.00 0.00 3.71
925 963 2.542257 TATCCTCCTCCTCCTCCTCT 57.458 55.000 0.00 0.00 0.00 3.69
926 964 2.542257 ATCCTCCTCCTCCTCCTCTA 57.458 55.000 0.00 0.00 0.00 2.43
929 967 2.719705 TCCTCCTCCTCCTCCTCTATTC 59.280 54.545 0.00 0.00 0.00 1.75
936 974 2.425102 CCTCCTCCTCTATTCCTTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
938 976 1.964933 CCTCCTCTATTCCTTCCGTCC 59.035 57.143 0.00 0.00 0.00 4.79
940 978 2.888414 CTCCTCTATTCCTTCCGTCCTC 59.112 54.545 0.00 0.00 0.00 3.71
953 991 1.171308 CGTCCTCGTGGGTCTTCTTA 58.829 55.000 3.23 0.00 36.25 2.10
955 993 2.223525 CGTCCTCGTGGGTCTTCTTATC 60.224 54.545 3.23 0.00 36.25 1.75
956 994 2.101082 GTCCTCGTGGGTCTTCTTATCC 59.899 54.545 3.23 0.00 36.25 2.59
966 1020 4.225267 GGGTCTTCTTATCCTCTTGTTCCA 59.775 45.833 0.00 0.00 0.00 3.53
974 1028 0.393077 CCTCTTGTTCCACCGTGAGT 59.607 55.000 0.00 0.00 0.00 3.41
975 1029 1.502231 CTCTTGTTCCACCGTGAGTG 58.498 55.000 0.00 0.00 46.83 3.51
1075 1141 4.435970 TCCTCCGGTCCAGCGCTA 62.436 66.667 10.99 0.00 0.00 4.26
1076 1142 3.905678 CCTCCGGTCCAGCGCTAG 61.906 72.222 10.99 1.56 0.00 3.42
1077 1143 4.577246 CTCCGGTCCAGCGCTAGC 62.577 72.222 10.99 4.06 45.58 3.42
1087 1153 3.900892 GCGCTAGCTCCTACGCCA 61.901 66.667 13.93 0.00 45.35 5.69
1093 1159 4.208686 GCTCCTACGCCACCTCGG 62.209 72.222 0.00 0.00 38.11 4.63
1224 1294 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
1225 1295 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1226 1296 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1228 1298 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
1231 1301 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1233 1303 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
1234 1304 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1235 1305 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1236 1306 1.705450 CTCCCTCCCTCCCTCCCTA 60.705 68.421 0.00 0.00 0.00 3.53
1238 1308 2.615773 CCTCCCTCCCTCCCTACC 59.384 72.222 0.00 0.00 0.00 3.18
1242 1318 0.342313 TCCCTCCCTCCCTACCTTTC 59.658 60.000 0.00 0.00 0.00 2.62
1249 1325 2.853077 CCCTCCCTACCTTTCATTCCTT 59.147 50.000 0.00 0.00 0.00 3.36
1254 1330 6.062258 TCCCTACCTTTCATTCCTTACTTG 57.938 41.667 0.00 0.00 0.00 3.16
1255 1331 5.550403 TCCCTACCTTTCATTCCTTACTTGT 59.450 40.000 0.00 0.00 0.00 3.16
1256 1332 6.731919 TCCCTACCTTTCATTCCTTACTTGTA 59.268 38.462 0.00 0.00 0.00 2.41
1258 1334 8.053355 CCCTACCTTTCATTCCTTACTTGTATT 58.947 37.037 0.00 0.00 0.00 1.89
1260 1336 7.939784 ACCTTTCATTCCTTACTTGTATTCC 57.060 36.000 0.00 0.00 0.00 3.01
1261 1337 7.466804 ACCTTTCATTCCTTACTTGTATTCCA 58.533 34.615 0.00 0.00 0.00 3.53
1265 1341 8.877864 TTCATTCCTTACTTGTATTCCACATT 57.122 30.769 0.00 0.00 36.90 2.71
1266 1342 8.877864 TCATTCCTTACTTGTATTCCACATTT 57.122 30.769 0.00 0.00 36.90 2.32
1268 1344 7.461182 TTCCTTACTTGTATTCCACATTTGG 57.539 36.000 0.00 0.00 45.56 3.28
1269 1345 6.548321 TCCTTACTTGTATTCCACATTTGGT 58.452 36.000 0.00 0.00 44.35 3.67
1311 1407 6.037610 TGCTTTTCTTCTTCAGAGTTGAGTTC 59.962 38.462 0.00 0.00 34.15 3.01
1312 1408 6.037610 GCTTTTCTTCTTCAGAGTTGAGTTCA 59.962 38.462 0.00 0.00 34.15 3.18
1313 1409 7.545362 TTTTCTTCTTCAGAGTTGAGTTCAG 57.455 36.000 0.00 0.00 34.15 3.02
1314 1410 5.860941 TCTTCTTCAGAGTTGAGTTCAGT 57.139 39.130 0.00 0.00 34.15 3.41
1315 1411 6.227298 TCTTCTTCAGAGTTGAGTTCAGTT 57.773 37.500 0.00 0.00 34.15 3.16
1327 1423 3.879295 TGAGTTCAGTTCAGGCTTGAAAG 59.121 43.478 13.42 9.17 44.49 2.62
1329 1425 2.952310 GTTCAGTTCAGGCTTGAAAGGT 59.048 45.455 13.42 0.00 44.49 3.50
1330 1426 3.297134 TCAGTTCAGGCTTGAAAGGTT 57.703 42.857 13.42 0.00 44.49 3.50
1331 1427 2.951642 TCAGTTCAGGCTTGAAAGGTTG 59.048 45.455 13.42 9.50 44.49 3.77
1333 1429 2.689983 AGTTCAGGCTTGAAAGGTTGTG 59.310 45.455 13.42 0.00 44.49 3.33
1336 1432 1.750778 CAGGCTTGAAAGGTTGTGTGT 59.249 47.619 0.00 0.00 0.00 3.72
1351 1469 5.865552 GGTTGTGTGTGATACATTACGTAGT 59.134 40.000 0.00 0.00 43.40 2.73
1372 1855 7.174426 CGTAGTATAGGTAGTGGATGAACATGA 59.826 40.741 0.00 0.00 0.00 3.07
1373 1856 7.531857 AGTATAGGTAGTGGATGAACATGAG 57.468 40.000 0.00 0.00 0.00 2.90
1374 1857 7.298374 AGTATAGGTAGTGGATGAACATGAGA 58.702 38.462 0.00 0.00 0.00 3.27
1375 1858 7.952930 AGTATAGGTAGTGGATGAACATGAGAT 59.047 37.037 0.00 0.00 0.00 2.75
1376 1859 5.965033 AGGTAGTGGATGAACATGAGATT 57.035 39.130 0.00 0.00 0.00 2.40
1377 1860 6.319048 AGGTAGTGGATGAACATGAGATTT 57.681 37.500 0.00 0.00 0.00 2.17
1378 1861 7.437713 AGGTAGTGGATGAACATGAGATTTA 57.562 36.000 0.00 0.00 0.00 1.40
1379 1862 8.038862 AGGTAGTGGATGAACATGAGATTTAT 57.961 34.615 0.00 0.00 0.00 1.40
1380 1863 8.497745 AGGTAGTGGATGAACATGAGATTTATT 58.502 33.333 0.00 0.00 0.00 1.40
1381 1864 9.125026 GGTAGTGGATGAACATGAGATTTATTT 57.875 33.333 0.00 0.00 0.00 1.40
1384 1867 9.911788 AGTGGATGAACATGAGATTTATTTACT 57.088 29.630 0.00 0.00 0.00 2.24
1387 1870 9.455847 GGATGAACATGAGATTTATTTACTTGC 57.544 33.333 0.00 0.00 0.00 4.01
1388 1871 9.455847 GATGAACATGAGATTTATTTACTTGCC 57.544 33.333 0.00 0.00 0.00 4.52
1389 1872 8.579850 TGAACATGAGATTTATTTACTTGCCT 57.420 30.769 0.00 0.00 0.00 4.75
1390 1873 9.679661 TGAACATGAGATTTATTTACTTGCCTA 57.320 29.630 0.00 0.00 0.00 3.93
1392 1875 8.159344 ACATGAGATTTATTTACTTGCCTAGC 57.841 34.615 0.00 0.00 0.00 3.42
1393 1876 7.995488 ACATGAGATTTATTTACTTGCCTAGCT 59.005 33.333 0.00 0.00 0.00 3.32
1394 1877 7.792374 TGAGATTTATTTACTTGCCTAGCTG 57.208 36.000 0.00 0.00 0.00 4.24
1395 1878 6.260936 TGAGATTTATTTACTTGCCTAGCTGC 59.739 38.462 0.00 0.00 0.00 5.25
1396 1879 4.875544 TTTATTTACTTGCCTAGCTGCG 57.124 40.909 0.00 0.00 0.00 5.18
1414 1897 5.066505 AGCTGCGTTATTATCTTCCCAAAAG 59.933 40.000 0.00 0.00 0.00 2.27
1430 1913 7.996758 TCCCAAAAGGAGTATCTATCTTCTT 57.003 36.000 0.00 0.00 40.93 2.52
1431 1914 8.024145 TCCCAAAAGGAGTATCTATCTTCTTC 57.976 38.462 0.00 0.00 40.93 2.87
1432 1915 7.846823 TCCCAAAAGGAGTATCTATCTTCTTCT 59.153 37.037 0.00 0.00 40.93 2.85
1433 1916 8.490311 CCCAAAAGGAGTATCTATCTTCTTCTT 58.510 37.037 0.00 0.00 38.24 2.52
1434 1917 9.541143 CCAAAAGGAGTATCTATCTTCTTCTTC 57.459 37.037 0.00 0.00 30.39 2.87
1464 1947 9.982651 TTTTGAGGATAAAAGGAGTATCTATCG 57.017 33.333 0.00 0.00 33.73 2.92
1473 1956 5.140747 AGGAGTATCTATCGGTTGAATGC 57.859 43.478 0.00 0.00 33.73 3.56
1474 1960 3.921021 GGAGTATCTATCGGTTGAATGCG 59.079 47.826 0.00 0.00 33.73 4.73
1502 1988 9.408648 TCAGTGGTTAAGAAAGAAAGAAAGAAT 57.591 29.630 0.00 0.00 0.00 2.40
1529 2022 9.464714 GAATGAATGAAAGAATGAATGATCTGG 57.535 33.333 0.00 0.00 0.00 3.86
1805 2305 4.588951 TGATCGATGAGCCATAGTTAAGGT 59.411 41.667 0.54 0.00 0.00 3.50
1862 2387 9.636879 CACATCAACCATTTCAATGTAATGTAA 57.363 29.630 10.82 0.00 34.60 2.41
1897 2422 6.913873 ATGCAAAATGGATTTATGTTCAGC 57.086 33.333 0.00 0.00 0.00 4.26
1917 2442 3.898123 AGCTTTCCTTTTCTCCCCTTTTC 59.102 43.478 0.00 0.00 0.00 2.29
1919 2444 4.345257 GCTTTCCTTTTCTCCCCTTTTCTT 59.655 41.667 0.00 0.00 0.00 2.52
1920 2445 5.740224 GCTTTCCTTTTCTCCCCTTTTCTTG 60.740 44.000 0.00 0.00 0.00 3.02
1921 2446 4.806952 TCCTTTTCTCCCCTTTTCTTGA 57.193 40.909 0.00 0.00 0.00 3.02
2036 2626 9.828852 CAAACCAAATTGATGTTTTATGATTGG 57.171 29.630 0.00 0.00 40.39 3.16
2037 2627 8.564509 AACCAAATTGATGTTTTATGATTGGG 57.435 30.769 0.00 0.00 39.21 4.12
2038 2628 7.915930 ACCAAATTGATGTTTTATGATTGGGA 58.084 30.769 0.00 0.00 39.21 4.37
2039 2629 8.550585 ACCAAATTGATGTTTTATGATTGGGAT 58.449 29.630 0.00 0.00 39.21 3.85
2040 2630 8.832521 CCAAATTGATGTTTTATGATTGGGATG 58.167 33.333 0.00 0.00 32.99 3.51
2086 2676 5.344743 TCTTGGTTCAGATGTGGAGTATC 57.655 43.478 0.00 0.00 0.00 2.24
2103 2693 0.391263 ATCCTCGTTTGAACCCGAGC 60.391 55.000 7.67 0.00 46.94 5.03
2121 2711 3.723260 GAGCCAGAGAAATGGTAGCTAC 58.277 50.000 15.88 15.88 42.75 3.58
2122 2712 3.107601 AGCCAGAGAAATGGTAGCTACA 58.892 45.455 24.75 11.73 42.75 2.74
2123 2713 3.519510 AGCCAGAGAAATGGTAGCTACAA 59.480 43.478 24.75 15.26 42.75 2.41
2124 2714 4.019321 AGCCAGAGAAATGGTAGCTACAAA 60.019 41.667 24.75 13.05 42.75 2.83
2125 2715 4.095036 GCCAGAGAAATGGTAGCTACAAAC 59.905 45.833 24.75 8.79 42.75 2.93
2126 2716 4.636206 CCAGAGAAATGGTAGCTACAAACC 59.364 45.833 24.75 11.30 35.47 3.27
2133 2723 3.491342 TGGTAGCTACAAACCAAATGCA 58.509 40.909 24.75 7.08 42.74 3.96
2134 2724 4.085733 TGGTAGCTACAAACCAAATGCAT 58.914 39.130 24.75 0.00 42.74 3.96
2135 2725 4.157656 TGGTAGCTACAAACCAAATGCATC 59.842 41.667 24.75 3.42 42.74 3.91
2136 2726 4.157656 GGTAGCTACAAACCAAATGCATCA 59.842 41.667 24.75 0.00 35.73 3.07
2137 2727 4.445452 AGCTACAAACCAAATGCATCAG 57.555 40.909 0.00 0.00 0.00 2.90
2138 2728 3.194116 AGCTACAAACCAAATGCATCAGG 59.806 43.478 14.08 14.08 0.00 3.86
2139 2729 2.460757 ACAAACCAAATGCATCAGGC 57.539 45.000 15.26 0.00 45.13 4.85
2140 2730 1.972795 ACAAACCAAATGCATCAGGCT 59.027 42.857 15.26 2.86 45.15 4.58
2141 2731 3.164268 ACAAACCAAATGCATCAGGCTA 58.836 40.909 15.26 0.00 45.15 3.93
2142 2732 3.056607 ACAAACCAAATGCATCAGGCTAC 60.057 43.478 15.26 0.00 45.15 3.58
2143 2733 2.814805 ACCAAATGCATCAGGCTACT 57.185 45.000 15.26 0.00 45.15 2.57
2144 2734 2.648059 ACCAAATGCATCAGGCTACTC 58.352 47.619 15.26 0.00 45.15 2.59
2145 2735 2.240667 ACCAAATGCATCAGGCTACTCT 59.759 45.455 15.26 0.00 45.15 3.24
2146 2736 2.617308 CCAAATGCATCAGGCTACTCTG 59.383 50.000 0.00 0.00 45.15 3.35
2147 2737 2.617308 CAAATGCATCAGGCTACTCTGG 59.383 50.000 0.00 0.00 45.15 3.86
2166 2960 5.569355 TCTGGGCTGAACATGAATTAAGAA 58.431 37.500 0.00 0.00 0.00 2.52
2167 2961 6.009589 TCTGGGCTGAACATGAATTAAGAAA 58.990 36.000 0.00 0.00 0.00 2.52
2168 2962 6.151648 TCTGGGCTGAACATGAATTAAGAAAG 59.848 38.462 0.00 0.00 0.00 2.62
2220 3105 0.310854 GTTGTTGGTTCAGCTTCGGG 59.689 55.000 0.00 0.00 0.00 5.14
2264 3175 6.620678 TCCAAATTTTGAGCGATTTTCTAGG 58.379 36.000 10.72 0.00 0.00 3.02
2277 3188 8.138712 AGCGATTTTCTAGGTTATTACTCTCAG 58.861 37.037 0.00 0.00 0.00 3.35
2359 3286 7.921214 ACTAGTCATTTATGAGATGGTAACACG 59.079 37.037 0.00 0.00 44.35 4.49
2363 3290 7.656837 TCATTTATGAGATGGTAACACGTCGC 61.657 42.308 0.00 0.00 40.27 5.19
2368 3295 1.740905 TGGTAACACGTCGCAGGAA 59.259 52.632 0.00 0.00 46.17 3.36
2374 3301 1.664649 CACGTCGCAGGAAGAAGCA 60.665 57.895 0.00 0.00 0.00 3.91
2375 3302 1.069090 ACGTCGCAGGAAGAAGCAA 59.931 52.632 0.00 0.00 0.00 3.91
2376 3303 0.531974 ACGTCGCAGGAAGAAGCAAA 60.532 50.000 0.00 0.00 0.00 3.68
2377 3304 0.586319 CGTCGCAGGAAGAAGCAAAA 59.414 50.000 0.00 0.00 0.00 2.44
2378 3305 1.197721 CGTCGCAGGAAGAAGCAAAAT 59.802 47.619 0.00 0.00 0.00 1.82
2379 3306 2.726066 CGTCGCAGGAAGAAGCAAAATC 60.726 50.000 0.00 0.00 0.00 2.17
2380 3307 1.812571 TCGCAGGAAGAAGCAAAATCC 59.187 47.619 0.00 0.00 0.00 3.01
2381 3308 1.466360 CGCAGGAAGAAGCAAAATCCG 60.466 52.381 0.00 0.00 37.05 4.18
2382 3309 1.733718 GCAGGAAGAAGCAAAATCCGC 60.734 52.381 0.00 0.00 37.05 5.54
2383 3310 1.541147 CAGGAAGAAGCAAAATCCGCA 59.459 47.619 0.00 0.00 37.05 5.69
2384 3311 1.815003 AGGAAGAAGCAAAATCCGCAG 59.185 47.619 0.00 0.00 37.05 5.18
2385 3312 1.622232 GAAGAAGCAAAATCCGCAGC 58.378 50.000 0.00 0.00 0.00 5.25
2386 3313 1.200948 GAAGAAGCAAAATCCGCAGCT 59.799 47.619 0.00 0.00 39.37 4.24
2387 3314 0.524862 AGAAGCAAAATCCGCAGCTG 59.475 50.000 10.11 10.11 37.41 4.24
2388 3315 0.242017 GAAGCAAAATCCGCAGCTGT 59.758 50.000 16.64 0.00 37.41 4.40
2389 3316 0.675633 AAGCAAAATCCGCAGCTGTT 59.324 45.000 16.64 0.00 37.41 3.16
2390 3317 1.533625 AGCAAAATCCGCAGCTGTTA 58.466 45.000 16.64 1.08 35.72 2.41
2391 3318 1.885887 AGCAAAATCCGCAGCTGTTAA 59.114 42.857 16.64 0.72 35.72 2.01
2392 3319 2.493278 AGCAAAATCCGCAGCTGTTAAT 59.507 40.909 16.64 3.31 35.72 1.40
2393 3320 3.056607 AGCAAAATCCGCAGCTGTTAATT 60.057 39.130 16.64 9.40 35.72 1.40
2394 3321 3.679502 GCAAAATCCGCAGCTGTTAATTT 59.320 39.130 16.64 14.51 0.00 1.82
2395 3322 4.434593 GCAAAATCCGCAGCTGTTAATTTG 60.435 41.667 16.64 18.90 0.00 2.32
2396 3323 3.508744 AATCCGCAGCTGTTAATTTGG 57.491 42.857 16.64 6.37 0.00 3.28
2397 3324 1.173043 TCCGCAGCTGTTAATTTGGG 58.827 50.000 16.64 4.48 0.00 4.12
2398 3325 1.173043 CCGCAGCTGTTAATTTGGGA 58.827 50.000 16.64 0.00 0.00 4.37
2399 3326 1.750778 CCGCAGCTGTTAATTTGGGAT 59.249 47.619 16.64 0.00 0.00 3.85
2400 3327 2.223572 CCGCAGCTGTTAATTTGGGATC 60.224 50.000 16.64 0.00 0.00 3.36
2401 3328 2.423185 CGCAGCTGTTAATTTGGGATCA 59.577 45.455 16.64 0.00 0.00 2.92
2402 3329 3.067180 CGCAGCTGTTAATTTGGGATCAT 59.933 43.478 16.64 0.00 0.00 2.45
2403 3330 4.440525 CGCAGCTGTTAATTTGGGATCATT 60.441 41.667 16.64 0.00 0.00 2.57
2404 3331 5.045872 GCAGCTGTTAATTTGGGATCATTC 58.954 41.667 16.64 0.00 0.00 2.67
2405 3332 5.163478 GCAGCTGTTAATTTGGGATCATTCT 60.163 40.000 16.64 0.00 0.00 2.40
2406 3333 6.628844 GCAGCTGTTAATTTGGGATCATTCTT 60.629 38.462 16.64 0.00 0.00 2.52
2407 3334 6.755141 CAGCTGTTAATTTGGGATCATTCTTG 59.245 38.462 5.25 0.00 0.00 3.02
2408 3335 6.664816 AGCTGTTAATTTGGGATCATTCTTGA 59.335 34.615 0.00 0.00 36.00 3.02
2409 3336 6.976925 GCTGTTAATTTGGGATCATTCTTGAG 59.023 38.462 0.00 0.00 34.73 3.02
2410 3337 7.363268 GCTGTTAATTTGGGATCATTCTTGAGT 60.363 37.037 0.00 0.00 34.73 3.41
2411 3338 9.177608 CTGTTAATTTGGGATCATTCTTGAGTA 57.822 33.333 0.00 0.00 34.73 2.59
2412 3339 9.527157 TGTTAATTTGGGATCATTCTTGAGTAA 57.473 29.630 0.00 0.00 34.73 2.24
2415 3342 7.830099 ATTTGGGATCATTCTTGAGTAATCC 57.170 36.000 0.00 0.00 34.73 3.01
2416 3343 6.581388 TTGGGATCATTCTTGAGTAATCCT 57.419 37.500 0.00 0.00 34.73 3.24
2417 3344 6.581388 TGGGATCATTCTTGAGTAATCCTT 57.419 37.500 0.00 0.00 34.73 3.36
2418 3345 6.595682 TGGGATCATTCTTGAGTAATCCTTC 58.404 40.000 0.00 0.00 34.73 3.46
2459 3386 7.976135 ACTACAGCATATGAATTCAAGATCC 57.024 36.000 13.09 0.00 0.00 3.36
2463 3390 6.002082 CAGCATATGAATTCAAGATCCTCCA 58.998 40.000 13.09 0.00 0.00 3.86
2469 3396 9.878737 ATATGAATTCAAGATCCTCCAGAAAAT 57.121 29.630 13.09 0.00 0.00 1.82
2474 3401 5.804639 TCAAGATCCTCCAGAAAATCGAAA 58.195 37.500 0.00 0.00 0.00 3.46
2478 3405 6.476378 AGATCCTCCAGAAAATCGAAAAAGA 58.524 36.000 0.00 0.00 0.00 2.52
2492 3419 8.431020 AATCGAAAAAGATTACGTGCTTTTAC 57.569 30.769 19.12 5.52 41.88 2.01
2521 3448 3.243816 ACCCCGCACCGTAAACCT 61.244 61.111 0.00 0.00 0.00 3.50
2525 3452 2.031465 CGCACCGTAAACCTGGGT 59.969 61.111 0.00 0.00 33.37 4.51
2557 3484 3.358932 ATGTCCCCGCAATCCCACC 62.359 63.158 0.00 0.00 0.00 4.61
2568 3500 2.097466 GCAATCCCACCTAACATTGTCG 59.903 50.000 0.00 0.00 0.00 4.35
2643 3598 8.532977 ACATATGCCAAAAATAAGACACAAAC 57.467 30.769 1.58 0.00 0.00 2.93
2648 3603 8.755696 TGCCAAAAATAAGACACAAACATATC 57.244 30.769 0.00 0.00 0.00 1.63
2649 3604 7.816995 TGCCAAAAATAAGACACAAACATATCC 59.183 33.333 0.00 0.00 0.00 2.59
2657 3612 9.685276 ATAAGACACAAACATATCCATCTTTCA 57.315 29.630 0.00 0.00 0.00 2.69
2673 3628 9.342308 TCCATCTTTCATCATGTATAAAAGACC 57.658 33.333 13.47 0.00 38.40 3.85
2674 3629 9.347240 CCATCTTTCATCATGTATAAAAGACCT 57.653 33.333 13.47 2.47 38.40 3.85
2676 3631 8.964476 TCTTTCATCATGTATAAAAGACCTCC 57.036 34.615 9.59 0.00 32.57 4.30
2677 3632 8.772250 TCTTTCATCATGTATAAAAGACCTCCT 58.228 33.333 9.59 0.00 32.57 3.69
2678 3633 8.737168 TTTCATCATGTATAAAAGACCTCCTG 57.263 34.615 0.00 0.00 0.00 3.86
2679 3634 6.830912 TCATCATGTATAAAAGACCTCCTGG 58.169 40.000 0.00 0.00 39.83 4.45
2689 3644 3.890527 ACCTCCTGGTGATTGATGC 57.109 52.632 0.00 0.00 46.51 3.91
2690 3645 1.293062 ACCTCCTGGTGATTGATGCT 58.707 50.000 0.00 0.00 46.51 3.79
2691 3646 2.481441 ACCTCCTGGTGATTGATGCTA 58.519 47.619 0.00 0.00 46.51 3.49
2692 3647 3.051581 ACCTCCTGGTGATTGATGCTAT 58.948 45.455 0.00 0.00 46.51 2.97
2693 3648 3.461085 ACCTCCTGGTGATTGATGCTATT 59.539 43.478 0.00 0.00 46.51 1.73
2694 3649 4.070716 CCTCCTGGTGATTGATGCTATTC 58.929 47.826 0.00 0.00 0.00 1.75
2695 3650 4.070716 CTCCTGGTGATTGATGCTATTCC 58.929 47.826 0.00 0.00 0.00 3.01
2696 3651 3.459227 TCCTGGTGATTGATGCTATTCCA 59.541 43.478 0.00 0.00 0.00 3.53
2697 3652 3.567164 CCTGGTGATTGATGCTATTCCAC 59.433 47.826 0.00 0.00 0.00 4.02
2698 3653 3.554934 TGGTGATTGATGCTATTCCACC 58.445 45.455 0.00 0.00 41.98 4.61
2699 3654 2.887152 GGTGATTGATGCTATTCCACCC 59.113 50.000 0.00 0.00 37.27 4.61
2700 3655 3.435601 GGTGATTGATGCTATTCCACCCT 60.436 47.826 0.00 0.00 37.27 4.34
2701 3656 4.210331 GTGATTGATGCTATTCCACCCTT 58.790 43.478 0.00 0.00 0.00 3.95
2702 3657 4.276926 GTGATTGATGCTATTCCACCCTTC 59.723 45.833 0.00 0.00 0.00 3.46
2703 3658 3.297134 TTGATGCTATTCCACCCTTCC 57.703 47.619 0.00 0.00 0.00 3.46
2704 3659 1.494721 TGATGCTATTCCACCCTTCCC 59.505 52.381 0.00 0.00 0.00 3.97
2705 3660 0.853530 ATGCTATTCCACCCTTCCCC 59.146 55.000 0.00 0.00 0.00 4.81
2706 3661 1.286305 TGCTATTCCACCCTTCCCCC 61.286 60.000 0.00 0.00 0.00 5.40
2723 3678 3.022557 CCCCCATCATCTTCATTGTGT 57.977 47.619 0.00 0.00 0.00 3.72
2724 3679 4.169059 CCCCCATCATCTTCATTGTGTA 57.831 45.455 0.00 0.00 0.00 2.90
2725 3680 4.139786 CCCCCATCATCTTCATTGTGTAG 58.860 47.826 0.00 0.00 0.00 2.74
2726 3681 3.567164 CCCCATCATCTTCATTGTGTAGC 59.433 47.826 0.00 0.00 0.00 3.58
2727 3682 3.567164 CCCATCATCTTCATTGTGTAGCC 59.433 47.826 0.00 0.00 0.00 3.93
2728 3683 3.249320 CCATCATCTTCATTGTGTAGCCG 59.751 47.826 0.00 0.00 0.00 5.52
2729 3684 3.885724 TCATCTTCATTGTGTAGCCGA 57.114 42.857 0.00 0.00 0.00 5.54
2730 3685 3.785486 TCATCTTCATTGTGTAGCCGAG 58.215 45.455 0.00 0.00 0.00 4.63
2731 3686 3.195610 TCATCTTCATTGTGTAGCCGAGT 59.804 43.478 0.00 0.00 0.00 4.18
2732 3687 2.959516 TCTTCATTGTGTAGCCGAGTG 58.040 47.619 0.00 0.00 0.00 3.51
2733 3688 2.299013 TCTTCATTGTGTAGCCGAGTGT 59.701 45.455 0.00 0.00 0.00 3.55
2734 3689 2.078849 TCATTGTGTAGCCGAGTGTG 57.921 50.000 0.00 0.00 0.00 3.82
2735 3690 1.078709 CATTGTGTAGCCGAGTGTGG 58.921 55.000 0.00 0.00 0.00 4.17
2736 3691 0.685097 ATTGTGTAGCCGAGTGTGGT 59.315 50.000 0.00 0.00 0.00 4.16
2737 3692 1.330234 TTGTGTAGCCGAGTGTGGTA 58.670 50.000 0.00 0.00 0.00 3.25
2738 3693 0.599558 TGTGTAGCCGAGTGTGGTAC 59.400 55.000 0.00 0.00 37.25 3.34
2739 3694 0.108945 GTGTAGCCGAGTGTGGTACC 60.109 60.000 4.43 4.43 36.19 3.34
2740 3695 0.540133 TGTAGCCGAGTGTGGTACCA 60.540 55.000 11.60 11.60 36.19 3.25
2741 3696 0.108945 GTAGCCGAGTGTGGTACCAC 60.109 60.000 33.97 33.97 46.33 4.16
2742 3697 1.252904 TAGCCGAGTGTGGTACCACC 61.253 60.000 36.26 27.55 45.63 4.61
2753 3708 1.071699 TGGTACCACCACTTCTCTTGC 59.928 52.381 11.60 0.00 44.79 4.01
2754 3709 1.348036 GGTACCACCACTTCTCTTGCT 59.652 52.381 7.15 0.00 38.42 3.91
2755 3710 2.613223 GGTACCACCACTTCTCTTGCTC 60.613 54.545 7.15 0.00 38.42 4.26
2756 3711 0.034059 ACCACCACTTCTCTTGCTCG 59.966 55.000 0.00 0.00 0.00 5.03
2757 3712 0.034059 CCACCACTTCTCTTGCTCGT 59.966 55.000 0.00 0.00 0.00 4.18
2758 3713 1.423395 CACCACTTCTCTTGCTCGTC 58.577 55.000 0.00 0.00 0.00 4.20
2759 3714 1.040646 ACCACTTCTCTTGCTCGTCA 58.959 50.000 0.00 0.00 0.00 4.35
2760 3715 1.269831 ACCACTTCTCTTGCTCGTCAC 60.270 52.381 0.00 0.00 0.00 3.67
2761 3716 1.423395 CACTTCTCTTGCTCGTCACC 58.577 55.000 0.00 0.00 0.00 4.02
2762 3717 0.318762 ACTTCTCTTGCTCGTCACCC 59.681 55.000 0.00 0.00 0.00 4.61
2763 3718 0.605589 CTTCTCTTGCTCGTCACCCT 59.394 55.000 0.00 0.00 0.00 4.34
2764 3719 0.603569 TTCTCTTGCTCGTCACCCTC 59.396 55.000 0.00 0.00 0.00 4.30
2765 3720 0.251386 TCTCTTGCTCGTCACCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
2766 3721 0.605589 CTCTTGCTCGTCACCCTCTT 59.394 55.000 0.00 0.00 0.00 2.85
2767 3722 1.001406 CTCTTGCTCGTCACCCTCTTT 59.999 52.381 0.00 0.00 0.00 2.52
2768 3723 1.000955 TCTTGCTCGTCACCCTCTTTC 59.999 52.381 0.00 0.00 0.00 2.62
2769 3724 0.034896 TTGCTCGTCACCCTCTTTCC 59.965 55.000 0.00 0.00 0.00 3.13
2770 3725 0.832135 TGCTCGTCACCCTCTTTCCT 60.832 55.000 0.00 0.00 0.00 3.36
2771 3726 1.183549 GCTCGTCACCCTCTTTCCTA 58.816 55.000 0.00 0.00 0.00 2.94
2772 3727 1.135053 GCTCGTCACCCTCTTTCCTAC 60.135 57.143 0.00 0.00 0.00 3.18
2773 3728 1.132643 CTCGTCACCCTCTTTCCTACG 59.867 57.143 0.00 0.00 0.00 3.51
2774 3729 0.458025 CGTCACCCTCTTTCCTACGC 60.458 60.000 0.00 0.00 0.00 4.42
2775 3730 0.896226 GTCACCCTCTTTCCTACGCT 59.104 55.000 0.00 0.00 0.00 5.07
2776 3731 1.275573 GTCACCCTCTTTCCTACGCTT 59.724 52.381 0.00 0.00 0.00 4.68
2777 3732 2.494870 GTCACCCTCTTTCCTACGCTTA 59.505 50.000 0.00 0.00 0.00 3.09
2778 3733 2.494870 TCACCCTCTTTCCTACGCTTAC 59.505 50.000 0.00 0.00 0.00 2.34
2779 3734 2.232941 CACCCTCTTTCCTACGCTTACA 59.767 50.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.223971 CCAAGGAACGATACATAGGCGT 60.224 50.000 0.00 0.00 40.35 5.68
8 9 2.404215 CCAAGGAACGATACATAGGCG 58.596 52.381 0.00 0.00 0.00 5.52
20 21 1.822186 ACGCACACACCCAAGGAAC 60.822 57.895 0.00 0.00 0.00 3.62
22 23 2.203139 CACGCACACACCCAAGGA 60.203 61.111 0.00 0.00 0.00 3.36
52 53 1.975660 ACAACCCAGTACAAACGCAT 58.024 45.000 0.00 0.00 0.00 4.73
82 83 6.806739 GCTTTTGCCCCGCTTTATATATAAAG 59.193 38.462 29.34 29.34 43.97 1.85
102 103 7.446769 ACCAAATATTACCGAAAAAGGCTTTT 58.553 30.769 19.14 19.14 37.46 2.27
146 147 9.955102 TCTACATATATCCGTATGTTGTAGTCT 57.045 33.333 5.04 0.00 41.29 3.24
189 190 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
193 194 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
238 239 8.547173 ACTCTCTCCATTCTCAAATATTTGTCT 58.453 33.333 23.95 8.00 39.18 3.41
239 240 8.729805 ACTCTCTCCATTCTCAAATATTTGTC 57.270 34.615 23.95 0.00 39.18 3.18
299 300 7.276218 ACACATGATATGCAATGCAAAAACTAC 59.724 33.333 13.45 0.80 43.62 2.73
394 415 8.050778 TCATCATTTACTTCAAATTTAGCGGT 57.949 30.769 0.00 0.00 34.49 5.68
417 438 3.488569 GGGTGGCGGGATGGATCA 61.489 66.667 0.00 0.00 0.00 2.92
418 439 4.626081 CGGGTGGCGGGATGGATC 62.626 72.222 0.00 0.00 0.00 3.36
420 441 4.781616 TACGGGTGGCGGGATGGA 62.782 66.667 0.00 0.00 0.00 3.41
466 487 9.574516 GGCCCTATAATATATGAACAATTAGGG 57.425 37.037 7.88 7.88 0.00 3.53
467 488 9.574516 GGGCCCTATAATATATGAACAATTAGG 57.425 37.037 17.04 0.00 0.00 2.69
499 520 4.095483 GTCAGCCTCACGATCAATGAAAAT 59.905 41.667 0.00 0.00 0.00 1.82
507 528 2.768253 AAATGTCAGCCTCACGATCA 57.232 45.000 0.00 0.00 0.00 2.92
545 566 5.185828 TGAACTAGCAGAAGCACTAATCTCA 59.814 40.000 0.00 0.00 45.49 3.27
587 625 6.805016 TGATTCTCAGAAAGATAGAGGCTT 57.195 37.500 0.00 0.00 32.82 4.35
588 626 6.383726 AGTTGATTCTCAGAAAGATAGAGGCT 59.616 38.462 0.00 0.00 32.82 4.58
589 627 6.581712 AGTTGATTCTCAGAAAGATAGAGGC 58.418 40.000 0.00 0.00 32.82 4.70
591 629 6.417635 GCGAGTTGATTCTCAGAAAGATAGAG 59.582 42.308 0.00 0.00 32.82 2.43
592 630 6.127619 TGCGAGTTGATTCTCAGAAAGATAGA 60.128 38.462 0.00 0.00 32.82 1.98
593 631 6.038985 TGCGAGTTGATTCTCAGAAAGATAG 58.961 40.000 0.00 0.00 32.82 2.08
594 632 5.965922 TGCGAGTTGATTCTCAGAAAGATA 58.034 37.500 0.00 0.00 32.82 1.98
595 633 4.825422 TGCGAGTTGATTCTCAGAAAGAT 58.175 39.130 0.00 0.00 32.82 2.40
596 634 4.257267 TGCGAGTTGATTCTCAGAAAGA 57.743 40.909 0.00 0.00 34.46 2.52
597 635 4.997905 TTGCGAGTTGATTCTCAGAAAG 57.002 40.909 0.00 0.00 34.46 2.62
598 636 4.393062 GGATTGCGAGTTGATTCTCAGAAA 59.607 41.667 0.00 0.00 34.46 2.52
601 639 3.264947 TGGATTGCGAGTTGATTCTCAG 58.735 45.455 0.00 0.00 34.46 3.35
614 652 0.098728 CGCCTAAAACCTGGATTGCG 59.901 55.000 0.00 2.92 34.52 4.85
632 670 6.675515 GTTTTCTGTAAAAGCAAGAATCCG 57.324 37.500 0.00 0.00 35.29 4.18
646 684 3.673543 AACAACAGGGGGTTTTCTGTA 57.326 42.857 0.00 0.00 42.67 2.74
648 686 3.031013 AGAAACAACAGGGGGTTTTCTG 58.969 45.455 0.00 0.00 35.98 3.02
655 693 2.286365 TTAGCAGAAACAACAGGGGG 57.714 50.000 0.00 0.00 0.00 5.40
661 699 3.821841 CCGGTTGATTAGCAGAAACAAC 58.178 45.455 13.00 13.00 39.67 3.32
679 717 8.603242 AATATAACTTAATACTTGACTGCCGG 57.397 34.615 0.00 0.00 0.00 6.13
699 737 7.548097 TGGGTTTATGCAAAAGCGAAAATATA 58.452 30.769 13.52 0.00 0.00 0.86
717 755 8.548025 TCATGAATTAAGACTCTGATGGGTTTA 58.452 33.333 0.00 0.00 0.00 2.01
721 759 9.736414 ATAATCATGAATTAAGACTCTGATGGG 57.264 33.333 0.00 0.00 33.59 4.00
725 763 9.565090 CCCAATAATCATGAATTAAGACTCTGA 57.435 33.333 0.00 0.00 33.59 3.27
726 764 9.347240 ACCCAATAATCATGAATTAAGACTCTG 57.653 33.333 0.00 0.00 33.59 3.35
727 765 9.927081 AACCCAATAATCATGAATTAAGACTCT 57.073 29.630 0.00 0.00 33.59 3.24
731 769 9.586732 CCCTAACCCAATAATCATGAATTAAGA 57.413 33.333 0.00 0.00 33.59 2.10
732 770 8.806146 CCCCTAACCCAATAATCATGAATTAAG 58.194 37.037 0.00 0.00 33.59 1.85
733 771 7.234577 GCCCCTAACCCAATAATCATGAATTAA 59.765 37.037 0.00 0.00 33.59 1.40
734 772 6.723977 GCCCCTAACCCAATAATCATGAATTA 59.276 38.462 0.00 0.00 34.37 1.40
735 773 5.543790 GCCCCTAACCCAATAATCATGAATT 59.456 40.000 0.00 0.00 0.00 2.17
736 774 5.086621 GCCCCTAACCCAATAATCATGAAT 58.913 41.667 0.00 0.00 0.00 2.57
737 775 4.479158 GCCCCTAACCCAATAATCATGAA 58.521 43.478 0.00 0.00 0.00 2.57
738 776 3.497763 CGCCCCTAACCCAATAATCATGA 60.498 47.826 0.00 0.00 0.00 3.07
739 777 2.819608 CGCCCCTAACCCAATAATCATG 59.180 50.000 0.00 0.00 0.00 3.07
740 778 2.817839 GCGCCCCTAACCCAATAATCAT 60.818 50.000 0.00 0.00 0.00 2.45
741 779 1.477923 GCGCCCCTAACCCAATAATCA 60.478 52.381 0.00 0.00 0.00 2.57
742 780 1.244816 GCGCCCCTAACCCAATAATC 58.755 55.000 0.00 0.00 0.00 1.75
743 781 0.536460 CGCGCCCCTAACCCAATAAT 60.536 55.000 0.00 0.00 0.00 1.28
744 782 1.153127 CGCGCCCCTAACCCAATAA 60.153 57.895 0.00 0.00 0.00 1.40
745 783 2.368821 ACGCGCCCCTAACCCAATA 61.369 57.895 5.73 0.00 0.00 1.90
746 784 3.723922 ACGCGCCCCTAACCCAAT 61.724 61.111 5.73 0.00 0.00 3.16
747 785 4.708386 CACGCGCCCCTAACCCAA 62.708 66.667 5.73 0.00 0.00 4.12
749 787 2.108278 ATATCACGCGCCCCTAACCC 62.108 60.000 5.73 0.00 0.00 4.11
750 788 0.949105 CATATCACGCGCCCCTAACC 60.949 60.000 5.73 0.00 0.00 2.85
751 789 0.949105 CCATATCACGCGCCCCTAAC 60.949 60.000 5.73 0.00 0.00 2.34
752 790 1.369692 CCATATCACGCGCCCCTAA 59.630 57.895 5.73 0.00 0.00 2.69
753 791 1.404479 AACCATATCACGCGCCCCTA 61.404 55.000 5.73 0.00 0.00 3.53
754 792 2.265467 AAACCATATCACGCGCCCCT 62.265 55.000 5.73 0.00 0.00 4.79
755 793 1.381165 AAAACCATATCACGCGCCCC 61.381 55.000 5.73 0.00 0.00 5.80
756 794 0.454196 AAAAACCATATCACGCGCCC 59.546 50.000 5.73 0.00 0.00 6.13
757 795 1.400494 AGAAAAACCATATCACGCGCC 59.600 47.619 5.73 0.00 0.00 6.53
758 796 2.825086 AGAAAAACCATATCACGCGC 57.175 45.000 5.73 0.00 0.00 6.86
759 797 3.680789 GGAAGAAAAACCATATCACGCG 58.319 45.455 3.53 3.53 0.00 6.01
760 798 3.126343 ACGGAAGAAAAACCATATCACGC 59.874 43.478 0.00 0.00 0.00 5.34
761 799 4.939509 ACGGAAGAAAAACCATATCACG 57.060 40.909 0.00 0.00 0.00 4.35
762 800 4.857037 GCAACGGAAGAAAAACCATATCAC 59.143 41.667 0.00 0.00 0.00 3.06
763 801 4.520874 TGCAACGGAAGAAAAACCATATCA 59.479 37.500 0.00 0.00 0.00 2.15
764 802 5.054390 TGCAACGGAAGAAAAACCATATC 57.946 39.130 0.00 0.00 0.00 1.63
765 803 5.227152 GTTGCAACGGAAGAAAAACCATAT 58.773 37.500 14.90 0.00 0.00 1.78
766 804 4.612943 GTTGCAACGGAAGAAAAACCATA 58.387 39.130 14.90 0.00 0.00 2.74
767 805 3.453424 GTTGCAACGGAAGAAAAACCAT 58.547 40.909 14.90 0.00 0.00 3.55
768 806 2.882324 GTTGCAACGGAAGAAAAACCA 58.118 42.857 14.90 0.00 0.00 3.67
781 819 2.050985 GAGCCTGTGCGTTGCAAC 60.051 61.111 19.89 19.89 41.47 4.17
782 820 1.785041 GAAGAGCCTGTGCGTTGCAA 61.785 55.000 0.00 0.00 41.47 4.08
783 821 2.203195 AAGAGCCTGTGCGTTGCA 60.203 55.556 0.00 0.00 44.33 4.08
784 822 1.510480 AAGAAGAGCCTGTGCGTTGC 61.510 55.000 0.00 0.00 44.33 4.17
785 823 0.236711 CAAGAAGAGCCTGTGCGTTG 59.763 55.000 0.00 0.00 44.33 4.10
786 824 0.886490 CCAAGAAGAGCCTGTGCGTT 60.886 55.000 0.00 0.00 44.33 4.84
787 825 1.302033 CCAAGAAGAGCCTGTGCGT 60.302 57.895 0.00 0.00 44.33 5.24
788 826 2.684843 GCCAAGAAGAGCCTGTGCG 61.685 63.158 0.00 0.00 44.33 5.34
789 827 1.303155 AGCCAAGAAGAGCCTGTGC 60.303 57.895 0.00 0.00 37.95 4.57
790 828 0.959372 CCAGCCAAGAAGAGCCTGTG 60.959 60.000 0.00 0.00 0.00 3.66
791 829 1.377994 CCAGCCAAGAAGAGCCTGT 59.622 57.895 0.00 0.00 0.00 4.00
792 830 0.615331 TACCAGCCAAGAAGAGCCTG 59.385 55.000 0.00 0.00 0.00 4.85
793 831 0.908198 CTACCAGCCAAGAAGAGCCT 59.092 55.000 0.00 0.00 0.00 4.58
794 832 0.905357 TCTACCAGCCAAGAAGAGCC 59.095 55.000 0.00 0.00 0.00 4.70
795 833 2.027653 AGTTCTACCAGCCAAGAAGAGC 60.028 50.000 0.00 0.00 32.56 4.09
796 834 3.259374 TGAGTTCTACCAGCCAAGAAGAG 59.741 47.826 0.00 0.00 32.56 2.85
797 835 3.239449 TGAGTTCTACCAGCCAAGAAGA 58.761 45.455 0.00 0.00 32.56 2.87
798 836 3.685139 TGAGTTCTACCAGCCAAGAAG 57.315 47.619 0.00 0.00 32.56 2.85
799 837 3.135712 TGTTGAGTTCTACCAGCCAAGAA 59.864 43.478 0.00 0.00 0.00 2.52
800 838 2.703536 TGTTGAGTTCTACCAGCCAAGA 59.296 45.455 0.00 0.00 0.00 3.02
801 839 3.126001 TGTTGAGTTCTACCAGCCAAG 57.874 47.619 0.00 0.00 0.00 3.61
802 840 3.118038 ACTTGTTGAGTTCTACCAGCCAA 60.118 43.478 0.00 0.00 33.92 4.52
803 841 2.438021 ACTTGTTGAGTTCTACCAGCCA 59.562 45.455 0.00 0.00 33.92 4.75
804 842 3.127425 ACTTGTTGAGTTCTACCAGCC 57.873 47.619 0.00 0.00 33.92 4.85
817 855 3.510719 CCCAACACTTGTGAACTTGTTG 58.489 45.455 7.83 6.37 45.52 3.33
818 856 2.094234 GCCCAACACTTGTGAACTTGTT 60.094 45.455 7.83 0.00 32.34 2.83
819 857 1.476488 GCCCAACACTTGTGAACTTGT 59.524 47.619 7.83 0.00 0.00 3.16
820 858 1.750778 AGCCCAACACTTGTGAACTTG 59.249 47.619 7.83 2.21 0.00 3.16
821 859 1.750778 CAGCCCAACACTTGTGAACTT 59.249 47.619 7.83 0.00 0.00 2.66
822 860 1.392589 CAGCCCAACACTTGTGAACT 58.607 50.000 7.83 0.00 0.00 3.01
823 861 0.249031 GCAGCCCAACACTTGTGAAC 60.249 55.000 7.83 0.00 0.00 3.18
824 862 1.723608 CGCAGCCCAACACTTGTGAA 61.724 55.000 7.83 0.00 0.00 3.18
825 863 2.186160 CGCAGCCCAACACTTGTGA 61.186 57.895 7.83 0.00 0.00 3.58
826 864 2.332514 CGCAGCCCAACACTTGTG 59.667 61.111 0.00 0.00 0.00 3.33
839 877 2.110967 CCAATCCCACTCTGCGCAG 61.111 63.158 31.53 31.53 0.00 5.18
840 878 2.046023 CCAATCCCACTCTGCGCA 60.046 61.111 10.98 10.98 0.00 6.09
841 879 2.825836 CCCAATCCCACTCTGCGC 60.826 66.667 0.00 0.00 0.00 6.09
842 880 1.971505 TAGCCCAATCCCACTCTGCG 61.972 60.000 0.00 0.00 0.00 5.18
843 881 0.179034 CTAGCCCAATCCCACTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
844 882 0.471617 CCTAGCCCAATCCCACTCTG 59.528 60.000 0.00 0.00 0.00 3.35
845 883 0.695803 CCCTAGCCCAATCCCACTCT 60.696 60.000 0.00 0.00 0.00 3.24
846 884 0.988678 ACCCTAGCCCAATCCCACTC 60.989 60.000 0.00 0.00 0.00 3.51
847 885 0.988678 GACCCTAGCCCAATCCCACT 60.989 60.000 0.00 0.00 0.00 4.00
848 886 1.279025 TGACCCTAGCCCAATCCCAC 61.279 60.000 0.00 0.00 0.00 4.61
849 887 1.083895 TGACCCTAGCCCAATCCCA 59.916 57.895 0.00 0.00 0.00 4.37
850 888 0.988678 AGTGACCCTAGCCCAATCCC 60.989 60.000 0.00 0.00 0.00 3.85
851 889 0.470341 GAGTGACCCTAGCCCAATCC 59.530 60.000 0.00 0.00 0.00 3.01
852 890 0.105039 CGAGTGACCCTAGCCCAATC 59.895 60.000 0.00 0.00 0.00 2.67
853 891 1.972660 GCGAGTGACCCTAGCCCAAT 61.973 60.000 0.00 0.00 35.93 3.16
854 892 2.656069 GCGAGTGACCCTAGCCCAA 61.656 63.158 0.00 0.00 35.93 4.12
855 893 3.075005 GCGAGTGACCCTAGCCCA 61.075 66.667 0.00 0.00 35.93 5.36
856 894 4.208686 CGCGAGTGACCCTAGCCC 62.209 72.222 0.00 0.00 38.46 5.19
857 895 4.208686 CCGCGAGTGACCCTAGCC 62.209 72.222 8.23 0.00 38.46 3.93
858 896 4.208686 CCCGCGAGTGACCCTAGC 62.209 72.222 8.23 0.00 38.33 3.42
859 897 4.208686 GCCCGCGAGTGACCCTAG 62.209 72.222 8.23 0.00 0.00 3.02
860 898 4.753662 AGCCCGCGAGTGACCCTA 62.754 66.667 8.23 0.00 0.00 3.53
886 924 2.978018 GAAGAAACAAGGCGGGCCG 61.978 63.158 24.35 24.35 41.95 6.13
907 945 2.542257 TAGAGGAGGAGGAGGAGGAT 57.458 55.000 0.00 0.00 0.00 3.24
909 947 2.225267 GGAATAGAGGAGGAGGAGGAGG 60.225 59.091 0.00 0.00 0.00 4.30
910 948 2.721906 AGGAATAGAGGAGGAGGAGGAG 59.278 54.545 0.00 0.00 0.00 3.69
919 957 2.888414 GAGGACGGAAGGAATAGAGGAG 59.112 54.545 0.00 0.00 0.00 3.69
920 958 2.748798 CGAGGACGGAAGGAATAGAGGA 60.749 54.545 0.00 0.00 35.72 3.71
921 959 1.609555 CGAGGACGGAAGGAATAGAGG 59.390 57.143 0.00 0.00 35.72 3.69
922 960 2.033550 CACGAGGACGGAAGGAATAGAG 59.966 54.545 0.00 0.00 44.46 2.43
923 961 2.022195 CACGAGGACGGAAGGAATAGA 58.978 52.381 0.00 0.00 44.46 1.98
924 962 1.067212 CCACGAGGACGGAAGGAATAG 59.933 57.143 0.00 0.00 44.46 1.73
925 963 1.108776 CCACGAGGACGGAAGGAATA 58.891 55.000 0.00 0.00 44.46 1.75
926 964 1.614241 CCCACGAGGACGGAAGGAAT 61.614 60.000 0.00 0.00 44.46 3.01
929 967 2.995574 ACCCACGAGGACGGAAGG 60.996 66.667 0.00 0.00 44.46 3.46
936 974 2.024273 AGGATAAGAAGACCCACGAGGA 60.024 50.000 0.00 0.00 39.89 3.71
938 976 3.292460 AGAGGATAAGAAGACCCACGAG 58.708 50.000 0.00 0.00 0.00 4.18
940 978 3.195825 ACAAGAGGATAAGAAGACCCACG 59.804 47.826 0.00 0.00 0.00 4.94
953 991 1.276421 CTCACGGTGGAACAAGAGGAT 59.724 52.381 8.50 0.00 44.16 3.24
955 993 0.393077 ACTCACGGTGGAACAAGAGG 59.607 55.000 8.50 0.00 44.16 3.69
956 994 1.068588 TCACTCACGGTGGAACAAGAG 59.931 52.381 8.50 0.00 44.16 2.85
966 1020 0.955178 CTGACAGACTCACTCACGGT 59.045 55.000 0.00 0.00 0.00 4.83
974 1028 2.048784 GCAGCGCTGACAGACTCA 60.049 61.111 40.21 0.00 0.00 3.41
975 1029 1.419874 GATGCAGCGCTGACAGACTC 61.420 60.000 40.21 24.39 0.00 3.36
976 1030 1.447489 GATGCAGCGCTGACAGACT 60.447 57.895 40.21 21.12 0.00 3.24
977 1031 2.459442 GGATGCAGCGCTGACAGAC 61.459 63.158 40.21 27.98 0.00 3.51
978 1032 2.125391 GGATGCAGCGCTGACAGA 60.125 61.111 40.21 20.15 0.00 3.41
979 1033 1.773054 GATGGATGCAGCGCTGACAG 61.773 60.000 40.21 15.35 0.00 3.51
980 1034 1.816679 GATGGATGCAGCGCTGACA 60.817 57.895 40.21 33.22 0.00 3.58
981 1035 2.541120 GGATGGATGCAGCGCTGAC 61.541 63.158 40.21 29.09 0.00 3.51
982 1036 2.203112 GGATGGATGCAGCGCTGA 60.203 61.111 40.21 24.64 0.00 4.26
983 1037 1.897137 ATGGATGGATGCAGCGCTG 60.897 57.895 32.83 32.83 0.00 5.18
1073 1139 1.787057 CGAGGTGGCGTAGGAGCTAG 61.787 65.000 0.00 0.00 37.29 3.42
1074 1140 1.822613 CGAGGTGGCGTAGGAGCTA 60.823 63.158 0.00 0.00 37.29 3.32
1075 1141 3.141488 CGAGGTGGCGTAGGAGCT 61.141 66.667 0.00 0.00 37.29 4.09
1076 1142 4.208686 CCGAGGTGGCGTAGGAGC 62.209 72.222 0.00 0.00 0.00 4.70
1077 1143 2.754658 ACCGAGGTGGCGTAGGAG 60.755 66.667 0.00 0.00 43.94 3.69
1078 1144 2.753043 GACCGAGGTGGCGTAGGA 60.753 66.667 0.00 0.00 43.94 2.94
1079 1145 4.189188 CGACCGAGGTGGCGTAGG 62.189 72.222 0.00 0.00 43.94 3.18
1080 1146 4.189188 CCGACCGAGGTGGCGTAG 62.189 72.222 0.00 0.00 43.94 3.51
1084 1150 4.754667 GAACCCGACCGAGGTGGC 62.755 72.222 0.00 0.00 43.94 5.01
1085 1151 4.430765 CGAACCCGACCGAGGTGG 62.431 72.222 0.00 0.00 46.41 4.61
1121 1187 4.527583 CGAGGCTGAGGCTGAGGC 62.528 72.222 19.63 19.63 38.98 4.70
1122 1188 3.847602 CCGAGGCTGAGGCTGAGG 61.848 72.222 15.18 13.01 38.98 3.86
1171 1240 1.787847 CGACGATGGTGTTCTTGGC 59.212 57.895 0.00 0.00 0.00 4.52
1206 1275 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1224 1294 0.044244 TGAAAGGTAGGGAGGGAGGG 59.956 60.000 0.00 0.00 0.00 4.30
1225 1295 2.198334 ATGAAAGGTAGGGAGGGAGG 57.802 55.000 0.00 0.00 0.00 4.30
1226 1296 2.439880 GGAATGAAAGGTAGGGAGGGAG 59.560 54.545 0.00 0.00 0.00 4.30
1228 1298 2.493091 AGGAATGAAAGGTAGGGAGGG 58.507 52.381 0.00 0.00 0.00 4.30
1231 1301 5.550403 ACAAGTAAGGAATGAAAGGTAGGGA 59.450 40.000 0.00 0.00 0.00 4.20
1233 1303 9.110502 GAATACAAGTAAGGAATGAAAGGTAGG 57.889 37.037 0.00 0.00 0.00 3.18
1234 1304 9.110502 GGAATACAAGTAAGGAATGAAAGGTAG 57.889 37.037 0.00 0.00 0.00 3.18
1235 1305 8.607713 TGGAATACAAGTAAGGAATGAAAGGTA 58.392 33.333 0.00 0.00 0.00 3.08
1236 1306 7.393515 GTGGAATACAAGTAAGGAATGAAAGGT 59.606 37.037 0.00 0.00 0.00 3.50
1238 1308 8.335532 TGTGGAATACAAGTAAGGAATGAAAG 57.664 34.615 0.00 0.00 36.06 2.62
1242 1318 8.915871 CAAATGTGGAATACAAGTAAGGAATG 57.084 34.615 0.00 0.00 43.77 2.67
1261 1337 1.422531 ATGCAACCCACACCAAATGT 58.577 45.000 0.00 0.00 44.81 2.71
1265 1341 1.047596 AGCAATGCAACCCACACCAA 61.048 50.000 8.35 0.00 0.00 3.67
1266 1342 1.457267 AGCAATGCAACCCACACCA 60.457 52.632 8.35 0.00 0.00 4.17
1268 1344 0.038892 CAGAGCAATGCAACCCACAC 60.039 55.000 8.35 0.00 0.00 3.82
1269 1345 1.808531 GCAGAGCAATGCAACCCACA 61.809 55.000 8.35 0.00 45.77 4.17
1311 1407 2.689983 ACAACCTTTCAAGCCTGAACTG 59.310 45.455 0.00 0.00 41.34 3.16
1312 1408 2.689983 CACAACCTTTCAAGCCTGAACT 59.310 45.455 0.00 0.00 41.34 3.01
1313 1409 2.427095 ACACAACCTTTCAAGCCTGAAC 59.573 45.455 0.00 0.00 41.34 3.18
1314 1410 2.426738 CACACAACCTTTCAAGCCTGAA 59.573 45.455 0.00 0.00 39.87 3.02
1315 1411 2.023673 CACACAACCTTTCAAGCCTGA 58.976 47.619 0.00 0.00 0.00 3.86
1327 1423 5.865552 ACTACGTAATGTATCACACACAACC 59.134 40.000 0.00 0.00 40.86 3.77
1329 1425 9.940166 CTATACTACGTAATGTATCACACACAA 57.060 33.333 9.93 0.00 40.86 3.33
1330 1426 8.562052 CCTATACTACGTAATGTATCACACACA 58.438 37.037 9.93 0.00 40.86 3.72
1331 1427 8.562892 ACCTATACTACGTAATGTATCACACAC 58.437 37.037 9.93 0.00 40.86 3.82
1336 1432 9.440773 CCACTACCTATACTACGTAATGTATCA 57.559 37.037 9.93 0.14 32.42 2.15
1351 1469 8.727100 AATCTCATGTTCATCCACTACCTATA 57.273 34.615 0.00 0.00 0.00 1.31
1372 1855 5.237344 CGCAGCTAGGCAAGTAAATAAATCT 59.763 40.000 0.00 0.00 0.00 2.40
1373 1856 5.007724 ACGCAGCTAGGCAAGTAAATAAATC 59.992 40.000 0.00 0.00 0.00 2.17
1374 1857 4.881850 ACGCAGCTAGGCAAGTAAATAAAT 59.118 37.500 0.00 0.00 0.00 1.40
1375 1858 4.258543 ACGCAGCTAGGCAAGTAAATAAA 58.741 39.130 0.00 0.00 0.00 1.40
1376 1859 3.869065 ACGCAGCTAGGCAAGTAAATAA 58.131 40.909 0.00 0.00 0.00 1.40
1377 1860 3.536956 ACGCAGCTAGGCAAGTAAATA 57.463 42.857 0.00 0.00 0.00 1.40
1378 1861 2.403252 ACGCAGCTAGGCAAGTAAAT 57.597 45.000 0.00 0.00 0.00 1.40
1379 1862 2.178912 AACGCAGCTAGGCAAGTAAA 57.821 45.000 0.00 0.00 0.00 2.01
1380 1863 3.536956 ATAACGCAGCTAGGCAAGTAA 57.463 42.857 0.00 0.00 0.00 2.24
1381 1864 3.536956 AATAACGCAGCTAGGCAAGTA 57.463 42.857 0.00 0.00 0.00 2.24
1382 1865 2.403252 AATAACGCAGCTAGGCAAGT 57.597 45.000 0.00 0.00 0.00 3.16
1383 1866 4.310769 AGATAATAACGCAGCTAGGCAAG 58.689 43.478 0.00 0.00 0.00 4.01
1384 1867 4.336889 AGATAATAACGCAGCTAGGCAA 57.663 40.909 0.00 0.00 0.00 4.52
1385 1868 4.307432 GAAGATAATAACGCAGCTAGGCA 58.693 43.478 0.00 0.00 0.00 4.75
1386 1869 3.680458 GGAAGATAATAACGCAGCTAGGC 59.320 47.826 0.00 0.00 0.00 3.93
1387 1870 4.246458 GGGAAGATAATAACGCAGCTAGG 58.754 47.826 0.00 0.00 0.00 3.02
1388 1871 4.883083 TGGGAAGATAATAACGCAGCTAG 58.117 43.478 0.00 0.00 0.00 3.42
1389 1872 4.948341 TGGGAAGATAATAACGCAGCTA 57.052 40.909 0.00 0.00 0.00 3.32
1390 1873 3.838244 TGGGAAGATAATAACGCAGCT 57.162 42.857 0.00 0.00 0.00 4.24
1391 1874 4.893424 TTTGGGAAGATAATAACGCAGC 57.107 40.909 0.00 0.00 0.00 5.25
1392 1875 5.588648 TCCTTTTGGGAAGATAATAACGCAG 59.411 40.000 0.00 0.00 41.91 5.18
1393 1876 5.502079 TCCTTTTGGGAAGATAATAACGCA 58.498 37.500 0.00 0.00 41.91 5.24
1394 1877 5.589050 ACTCCTTTTGGGAAGATAATAACGC 59.411 40.000 0.00 0.00 44.58 4.84
1395 1878 8.904099 ATACTCCTTTTGGGAAGATAATAACG 57.096 34.615 0.00 0.00 44.58 3.18
1438 1921 9.982651 CGATAGATACTCCTTTTATCCTCAAAA 57.017 33.333 0.00 0.00 39.76 2.44
1439 1922 8.585881 CCGATAGATACTCCTTTTATCCTCAAA 58.414 37.037 0.00 0.00 39.76 2.69
1440 1923 7.728981 ACCGATAGATACTCCTTTTATCCTCAA 59.271 37.037 0.00 0.00 39.76 3.02
1441 1924 7.239438 ACCGATAGATACTCCTTTTATCCTCA 58.761 38.462 0.00 0.00 39.76 3.86
1442 1925 7.706100 ACCGATAGATACTCCTTTTATCCTC 57.294 40.000 0.00 0.00 39.76 3.71
1443 1926 7.728981 TCAACCGATAGATACTCCTTTTATCCT 59.271 37.037 0.00 0.00 39.76 3.24
1444 1927 7.893658 TCAACCGATAGATACTCCTTTTATCC 58.106 38.462 0.00 0.00 39.76 2.59
1445 1928 9.930693 ATTCAACCGATAGATACTCCTTTTATC 57.069 33.333 0.00 0.00 39.76 1.75
1446 1929 9.712305 CATTCAACCGATAGATACTCCTTTTAT 57.288 33.333 0.00 0.00 39.76 1.40
1447 1930 7.656137 GCATTCAACCGATAGATACTCCTTTTA 59.344 37.037 0.00 0.00 39.76 1.52
1448 1931 6.483640 GCATTCAACCGATAGATACTCCTTTT 59.516 38.462 0.00 0.00 39.76 2.27
1449 1932 5.992217 GCATTCAACCGATAGATACTCCTTT 59.008 40.000 0.00 0.00 39.76 3.11
1450 1933 5.542779 GCATTCAACCGATAGATACTCCTT 58.457 41.667 0.00 0.00 39.76 3.36
1451 1934 4.321304 CGCATTCAACCGATAGATACTCCT 60.321 45.833 0.00 0.00 39.76 3.69
1452 1935 3.921021 CGCATTCAACCGATAGATACTCC 59.079 47.826 0.00 0.00 39.76 3.85
1453 1936 4.547532 ACGCATTCAACCGATAGATACTC 58.452 43.478 0.00 0.00 39.76 2.59
1454 1937 4.585955 ACGCATTCAACCGATAGATACT 57.414 40.909 0.00 0.00 39.76 2.12
1455 1938 4.743151 TGAACGCATTCAACCGATAGATAC 59.257 41.667 0.00 0.00 41.99 2.24
1464 1947 0.951558 ACCACTGAACGCATTCAACC 59.048 50.000 0.00 0.00 44.28 3.77
1473 1956 6.598753 TCTTTCTTTCTTAACCACTGAACG 57.401 37.500 0.00 0.00 0.00 3.95
1474 1960 8.674607 TCTTTCTTTCTTTCTTAACCACTGAAC 58.325 33.333 0.00 0.00 0.00 3.18
1506 1992 8.762481 ATCCAGATCATTCATTCTTTCATTCA 57.238 30.769 0.00 0.00 0.00 2.57
1514 2007 6.937465 CACATCAGATCCAGATCATTCATTCT 59.063 38.462 10.17 0.00 40.22 2.40
1518 2011 4.202430 CCCACATCAGATCCAGATCATTCA 60.202 45.833 10.17 0.00 40.22 2.57
1529 2022 1.673168 GCCTGAACCCACATCAGATC 58.327 55.000 5.16 0.00 45.74 2.75
1755 2255 0.902531 TCTTGTTGAGGTCGATCCCC 59.097 55.000 0.00 0.00 36.75 4.81
1805 2305 5.012046 TCAAGAAGATGTTGTTGCTAGGAGA 59.988 40.000 7.53 0.00 36.96 3.71
1871 2396 7.707893 GCTGAACATAAATCCATTTTGCATACT 59.292 33.333 0.00 0.00 0.00 2.12
1893 2418 2.065799 AGGGGAGAAAAGGAAAGCTGA 58.934 47.619 0.00 0.00 0.00 4.26
1897 2422 5.598417 TCAAGAAAAGGGGAGAAAAGGAAAG 59.402 40.000 0.00 0.00 0.00 2.62
1917 2442 8.248945 ACTCATCAAGGAAAATAGCAAATCAAG 58.751 33.333 0.00 0.00 0.00 3.02
1919 2444 7.707624 ACTCATCAAGGAAAATAGCAAATCA 57.292 32.000 0.00 0.00 0.00 2.57
1947 2518 9.970553 ATGATCCAGTATGATGCTTAACATTAT 57.029 29.630 0.00 0.00 39.84 1.28
1949 2520 8.701908 AATGATCCAGTATGATGCTTAACATT 57.298 30.769 0.00 0.00 39.84 2.71
2036 2626 3.872459 AACATCCTTCCCTGATCATCC 57.128 47.619 0.00 0.00 0.00 3.51
2037 2627 7.000472 TCATAAAACATCCTTCCCTGATCATC 59.000 38.462 0.00 0.00 0.00 2.92
2038 2628 6.914665 TCATAAAACATCCTTCCCTGATCAT 58.085 36.000 0.00 0.00 0.00 2.45
2039 2629 6.325993 TCATAAAACATCCTTCCCTGATCA 57.674 37.500 0.00 0.00 0.00 2.92
2040 2630 7.723172 AGAATCATAAAACATCCTTCCCTGATC 59.277 37.037 0.00 0.00 0.00 2.92
2088 2678 1.301401 CTGGCTCGGGTTCAAACGA 60.301 57.895 0.00 0.00 37.56 3.85
2089 2679 1.291877 CTCTGGCTCGGGTTCAAACG 61.292 60.000 0.00 0.00 0.00 3.60
2090 2680 0.034896 TCTCTGGCTCGGGTTCAAAC 59.965 55.000 0.00 0.00 0.00 2.93
2091 2681 0.762418 TTCTCTGGCTCGGGTTCAAA 59.238 50.000 0.00 0.00 0.00 2.69
2092 2682 0.762418 TTTCTCTGGCTCGGGTTCAA 59.238 50.000 0.00 0.00 0.00 2.69
2093 2683 0.984230 ATTTCTCTGGCTCGGGTTCA 59.016 50.000 0.00 0.00 0.00 3.18
2094 2684 1.373570 CATTTCTCTGGCTCGGGTTC 58.626 55.000 0.00 0.00 0.00 3.62
2095 2685 0.035056 CCATTTCTCTGGCTCGGGTT 60.035 55.000 0.00 0.00 0.00 4.11
2096 2686 1.201429 ACCATTTCTCTGGCTCGGGT 61.201 55.000 0.00 0.00 40.15 5.28
2097 2687 0.830648 TACCATTTCTCTGGCTCGGG 59.169 55.000 0.00 0.00 40.15 5.14
2103 2693 4.636206 GGTTTGTAGCTACCATTTCTCTGG 59.364 45.833 21.01 0.00 42.35 3.86
2121 2711 2.754946 AGCCTGATGCATTTGGTTTG 57.245 45.000 16.77 0.00 44.83 2.93
2122 2712 3.434309 AGTAGCCTGATGCATTTGGTTT 58.566 40.909 16.77 10.25 44.83 3.27
2123 2713 3.019564 GAGTAGCCTGATGCATTTGGTT 58.980 45.455 16.77 14.21 44.83 3.67
2124 2714 2.240667 AGAGTAGCCTGATGCATTTGGT 59.759 45.455 16.77 9.82 44.83 3.67
2125 2715 2.617308 CAGAGTAGCCTGATGCATTTGG 59.383 50.000 0.00 7.62 44.83 3.28
2126 2716 2.617308 CCAGAGTAGCCTGATGCATTTG 59.383 50.000 0.00 0.00 44.83 2.32
2127 2717 2.422519 CCCAGAGTAGCCTGATGCATTT 60.423 50.000 0.00 0.00 44.83 2.32
2128 2718 1.142465 CCCAGAGTAGCCTGATGCATT 59.858 52.381 0.00 0.00 44.83 3.56
2129 2719 0.763652 CCCAGAGTAGCCTGATGCAT 59.236 55.000 0.00 0.00 44.83 3.96
2130 2720 1.976132 GCCCAGAGTAGCCTGATGCA 61.976 60.000 0.00 0.00 44.83 3.96
2131 2721 1.227793 GCCCAGAGTAGCCTGATGC 60.228 63.158 0.00 0.00 36.29 3.91
2132 2722 0.106335 CAGCCCAGAGTAGCCTGATG 59.894 60.000 0.00 0.00 36.29 3.07
2133 2723 0.031716 TCAGCCCAGAGTAGCCTGAT 60.032 55.000 0.00 0.00 36.29 2.90
2134 2724 0.252239 TTCAGCCCAGAGTAGCCTGA 60.252 55.000 0.00 0.00 36.29 3.86
2135 2725 0.107945 GTTCAGCCCAGAGTAGCCTG 60.108 60.000 0.00 0.00 0.00 4.85
2136 2726 0.545309 TGTTCAGCCCAGAGTAGCCT 60.545 55.000 0.00 0.00 0.00 4.58
2137 2727 0.543749 ATGTTCAGCCCAGAGTAGCC 59.456 55.000 0.00 0.00 0.00 3.93
2138 2728 1.208052 TCATGTTCAGCCCAGAGTAGC 59.792 52.381 0.00 0.00 0.00 3.58
2139 2729 3.616956 TTCATGTTCAGCCCAGAGTAG 57.383 47.619 0.00 0.00 0.00 2.57
2140 2730 4.574674 AATTCATGTTCAGCCCAGAGTA 57.425 40.909 0.00 0.00 0.00 2.59
2141 2731 3.446442 AATTCATGTTCAGCCCAGAGT 57.554 42.857 0.00 0.00 0.00 3.24
2142 2732 5.188434 TCTTAATTCATGTTCAGCCCAGAG 58.812 41.667 0.00 0.00 0.00 3.35
2143 2733 5.178096 TCTTAATTCATGTTCAGCCCAGA 57.822 39.130 0.00 0.00 0.00 3.86
2144 2734 5.902613 TTCTTAATTCATGTTCAGCCCAG 57.097 39.130 0.00 0.00 0.00 4.45
2145 2735 6.009589 TCTTTCTTAATTCATGTTCAGCCCA 58.990 36.000 0.00 0.00 0.00 5.36
2146 2736 6.515272 TCTTTCTTAATTCATGTTCAGCCC 57.485 37.500 0.00 0.00 0.00 5.19
2147 2737 8.866956 CAATTCTTTCTTAATTCATGTTCAGCC 58.133 33.333 0.00 0.00 0.00 4.85
2166 2960 7.787623 AGAATTCCTTTCCACATCAATTCTT 57.212 32.000 0.65 0.00 37.31 2.52
2167 2961 7.787623 AAGAATTCCTTTCCACATCAATTCT 57.212 32.000 0.65 0.00 40.60 2.40
2200 3085 0.310854 CCGAAGCTGAACCAACAACC 59.689 55.000 0.00 0.00 0.00 3.77
2220 3105 4.940046 TGGAGACATGCAGATCTCTTTTTC 59.060 41.667 22.62 11.07 41.05 2.29
2359 3286 2.414691 GGATTTTGCTTCTTCCTGCGAC 60.415 50.000 0.00 0.00 0.00 5.19
2363 3290 1.541147 TGCGGATTTTGCTTCTTCCTG 59.459 47.619 0.00 0.00 0.00 3.86
2368 3295 0.524862 CAGCTGCGGATTTTGCTTCT 59.475 50.000 0.00 0.00 33.03 2.85
2374 3301 4.244862 CCAAATTAACAGCTGCGGATTTT 58.755 39.130 15.27 5.08 0.00 1.82
2375 3302 3.368323 CCCAAATTAACAGCTGCGGATTT 60.368 43.478 15.27 13.87 0.00 2.17
2376 3303 2.166254 CCCAAATTAACAGCTGCGGATT 59.834 45.455 15.27 8.37 0.00 3.01
2377 3304 1.750778 CCCAAATTAACAGCTGCGGAT 59.249 47.619 15.27 1.72 0.00 4.18
2378 3305 1.173043 CCCAAATTAACAGCTGCGGA 58.827 50.000 15.27 0.00 0.00 5.54
2379 3306 1.173043 TCCCAAATTAACAGCTGCGG 58.827 50.000 15.27 0.00 0.00 5.69
2380 3307 2.423185 TGATCCCAAATTAACAGCTGCG 59.577 45.455 15.27 0.00 0.00 5.18
2381 3308 4.660789 ATGATCCCAAATTAACAGCTGC 57.339 40.909 15.27 0.00 0.00 5.25
2382 3309 6.461110 AGAATGATCCCAAATTAACAGCTG 57.539 37.500 13.48 13.48 0.00 4.24
2383 3310 6.664816 TCAAGAATGATCCCAAATTAACAGCT 59.335 34.615 0.00 0.00 0.00 4.24
2384 3311 6.866480 TCAAGAATGATCCCAAATTAACAGC 58.134 36.000 0.00 0.00 0.00 4.40
2385 3312 8.059798 ACTCAAGAATGATCCCAAATTAACAG 57.940 34.615 0.00 0.00 34.37 3.16
2386 3313 9.527157 TTACTCAAGAATGATCCCAAATTAACA 57.473 29.630 0.00 0.00 34.37 2.41
2389 3316 9.354673 GGATTACTCAAGAATGATCCCAAATTA 57.645 33.333 0.00 0.00 34.37 1.40
2390 3317 8.063770 AGGATTACTCAAGAATGATCCCAAATT 58.936 33.333 0.00 0.00 33.32 1.82
2391 3318 7.589993 AGGATTACTCAAGAATGATCCCAAAT 58.410 34.615 0.00 0.00 33.32 2.32
2392 3319 6.973642 AGGATTACTCAAGAATGATCCCAAA 58.026 36.000 0.00 0.00 33.32 3.28
2393 3320 6.581388 AGGATTACTCAAGAATGATCCCAA 57.419 37.500 0.00 0.00 33.32 4.12
2394 3321 6.158520 TGAAGGATTACTCAAGAATGATCCCA 59.841 38.462 0.00 0.00 33.32 4.37
2395 3322 6.595682 TGAAGGATTACTCAAGAATGATCCC 58.404 40.000 0.00 0.00 33.32 3.85
2396 3323 8.511604 TTTGAAGGATTACTCAAGAATGATCC 57.488 34.615 0.00 0.00 34.37 3.36
2416 3343 9.982291 GCTGTAGTATCGTTGAATATTTTTGAA 57.018 29.630 0.00 0.00 0.00 2.69
2417 3344 9.157104 TGCTGTAGTATCGTTGAATATTTTTGA 57.843 29.630 0.00 0.00 0.00 2.69
2418 3345 9.935682 ATGCTGTAGTATCGTTGAATATTTTTG 57.064 29.630 0.00 0.00 0.00 2.44
2430 3357 8.360390 TCTTGAATTCATATGCTGTAGTATCGT 58.640 33.333 9.40 0.00 0.00 3.73
2438 3365 6.002704 GGAGGATCTTGAATTCATATGCTGT 58.997 40.000 22.05 7.00 33.73 4.40
2459 3386 7.478667 CACGTAATCTTTTTCGATTTTCTGGAG 59.521 37.037 0.00 0.00 35.40 3.86
2463 3390 6.899114 AGCACGTAATCTTTTTCGATTTTCT 58.101 32.000 0.00 0.00 35.40 2.52
2469 3396 6.365050 GGTAAAAGCACGTAATCTTTTTCGA 58.635 36.000 20.09 7.00 41.26 3.71
2474 3401 3.760151 GGGGGTAAAAGCACGTAATCTTT 59.240 43.478 0.00 0.00 34.30 2.52
2502 3429 3.729698 GTTTACGGTGCGGGGTGC 61.730 66.667 0.00 0.00 46.70 5.01
2539 3466 2.275418 GTGGGATTGCGGGGACAT 59.725 61.111 0.00 0.00 0.00 3.06
2557 3484 7.953158 AATCTGGATGATACGACAATGTTAG 57.047 36.000 0.00 0.00 34.45 2.34
2611 3544 9.023967 GTCTTATTTTTGGCATATGTTGATGAC 57.976 33.333 4.29 0.00 35.18 3.06
2648 3603 9.347240 AGGTCTTTTATACATGATGAAAGATGG 57.653 33.333 18.72 3.05 46.22 3.51
2653 3608 7.775093 CCAGGAGGTCTTTTATACATGATGAAA 59.225 37.037 0.00 0.00 0.00 2.69
2672 3627 3.784511 ATAGCATCAATCACCAGGAGG 57.215 47.619 0.00 0.00 42.21 4.30
2673 3628 4.070716 GGAATAGCATCAATCACCAGGAG 58.929 47.826 0.00 0.00 0.00 3.69
2674 3629 3.459227 TGGAATAGCATCAATCACCAGGA 59.541 43.478 0.00 0.00 0.00 3.86
2675 3630 3.567164 GTGGAATAGCATCAATCACCAGG 59.433 47.826 0.00 0.00 0.00 4.45
2676 3631 3.567164 GGTGGAATAGCATCAATCACCAG 59.433 47.826 0.00 0.00 41.78 4.00
2677 3632 3.554934 GGTGGAATAGCATCAATCACCA 58.445 45.455 0.00 0.00 41.78 4.17
2678 3633 2.887152 GGGTGGAATAGCATCAATCACC 59.113 50.000 0.00 0.00 41.54 4.02
2679 3634 3.825328 AGGGTGGAATAGCATCAATCAC 58.175 45.455 0.00 0.00 0.00 3.06
2680 3635 4.464008 GAAGGGTGGAATAGCATCAATCA 58.536 43.478 0.00 0.00 0.00 2.57
2681 3636 3.823304 GGAAGGGTGGAATAGCATCAATC 59.177 47.826 0.00 0.00 0.00 2.67
2682 3637 3.437052 GGGAAGGGTGGAATAGCATCAAT 60.437 47.826 0.00 0.00 0.00 2.57
2683 3638 2.091885 GGGAAGGGTGGAATAGCATCAA 60.092 50.000 0.00 0.00 0.00 2.57
2684 3639 1.494721 GGGAAGGGTGGAATAGCATCA 59.505 52.381 0.00 0.00 0.00 3.07
2685 3640 1.202940 GGGGAAGGGTGGAATAGCATC 60.203 57.143 0.00 0.00 0.00 3.91
2686 3641 0.853530 GGGGAAGGGTGGAATAGCAT 59.146 55.000 0.00 0.00 0.00 3.79
2687 3642 1.286305 GGGGGAAGGGTGGAATAGCA 61.286 60.000 0.00 0.00 0.00 3.49
2688 3643 1.537172 GGGGGAAGGGTGGAATAGC 59.463 63.158 0.00 0.00 0.00 2.97
2703 3658 3.022557 ACACAATGAAGATGATGGGGG 57.977 47.619 0.00 0.00 0.00 5.40
2704 3659 3.567164 GCTACACAATGAAGATGATGGGG 59.433 47.826 0.00 0.00 0.00 4.96
2705 3660 3.567164 GGCTACACAATGAAGATGATGGG 59.433 47.826 0.00 0.00 0.00 4.00
2706 3661 3.249320 CGGCTACACAATGAAGATGATGG 59.751 47.826 0.00 0.00 0.00 3.51
2707 3662 4.122046 TCGGCTACACAATGAAGATGATG 58.878 43.478 0.00 0.00 0.00 3.07
2708 3663 4.141846 ACTCGGCTACACAATGAAGATGAT 60.142 41.667 0.00 0.00 0.00 2.45
2709 3664 3.195610 ACTCGGCTACACAATGAAGATGA 59.804 43.478 0.00 0.00 0.00 2.92
2710 3665 3.308053 CACTCGGCTACACAATGAAGATG 59.692 47.826 0.00 0.00 0.00 2.90
2711 3666 3.055819 ACACTCGGCTACACAATGAAGAT 60.056 43.478 0.00 0.00 0.00 2.40
2712 3667 2.299013 ACACTCGGCTACACAATGAAGA 59.701 45.455 0.00 0.00 0.00 2.87
2713 3668 2.413112 CACACTCGGCTACACAATGAAG 59.587 50.000 0.00 0.00 0.00 3.02
2714 3669 2.412870 CACACTCGGCTACACAATGAA 58.587 47.619 0.00 0.00 0.00 2.57
2715 3670 1.337728 CCACACTCGGCTACACAATGA 60.338 52.381 0.00 0.00 0.00 2.57
2716 3671 1.078709 CCACACTCGGCTACACAATG 58.921 55.000 0.00 0.00 0.00 2.82
2717 3672 0.685097 ACCACACTCGGCTACACAAT 59.315 50.000 0.00 0.00 0.00 2.71
2718 3673 1.000060 GTACCACACTCGGCTACACAA 60.000 52.381 0.00 0.00 0.00 3.33
2719 3674 0.599558 GTACCACACTCGGCTACACA 59.400 55.000 0.00 0.00 0.00 3.72
2720 3675 0.108945 GGTACCACACTCGGCTACAC 60.109 60.000 7.15 0.00 0.00 2.90
2721 3676 0.540133 TGGTACCACACTCGGCTACA 60.540 55.000 11.60 0.00 0.00 2.74
2722 3677 0.108945 GTGGTACCACACTCGGCTAC 60.109 60.000 35.21 8.06 45.53 3.58
2723 3678 2.269978 GTGGTACCACACTCGGCTA 58.730 57.895 35.21 0.00 45.53 3.93
2724 3679 3.057337 GTGGTACCACACTCGGCT 58.943 61.111 35.21 0.00 45.53 5.52
2725 3680 2.874664 TGGTGGTACCACACTCGGC 61.875 63.158 38.81 24.06 44.79 5.54
2726 3681 3.462169 TGGTGGTACCACACTCGG 58.538 61.111 38.81 0.00 44.79 4.63
2734 3689 1.348036 AGCAAGAGAAGTGGTGGTACC 59.652 52.381 4.43 4.43 39.22 3.34
2735 3690 2.689646 GAGCAAGAGAAGTGGTGGTAC 58.310 52.381 0.00 0.00 0.00 3.34
2736 3691 1.272490 CGAGCAAGAGAAGTGGTGGTA 59.728 52.381 0.00 0.00 0.00 3.25
2737 3692 0.034059 CGAGCAAGAGAAGTGGTGGT 59.966 55.000 0.00 0.00 0.00 4.16
2738 3693 0.034059 ACGAGCAAGAGAAGTGGTGG 59.966 55.000 0.00 0.00 0.00 4.61
2739 3694 1.269778 TGACGAGCAAGAGAAGTGGTG 60.270 52.381 0.00 0.00 0.00 4.17
2740 3695 1.040646 TGACGAGCAAGAGAAGTGGT 58.959 50.000 0.00 0.00 0.00 4.16
2741 3696 1.423395 GTGACGAGCAAGAGAAGTGG 58.577 55.000 0.00 0.00 0.00 4.00
2742 3697 1.423395 GGTGACGAGCAAGAGAAGTG 58.577 55.000 0.00 0.00 0.00 3.16
2743 3698 0.318762 GGGTGACGAGCAAGAGAAGT 59.681 55.000 0.00 0.00 0.00 3.01
2744 3699 0.605589 AGGGTGACGAGCAAGAGAAG 59.394 55.000 0.00 0.00 0.00 2.85
2745 3700 0.603569 GAGGGTGACGAGCAAGAGAA 59.396 55.000 0.00 0.00 0.00 2.87
2746 3701 0.251386 AGAGGGTGACGAGCAAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
2747 3702 0.605589 AAGAGGGTGACGAGCAAGAG 59.394 55.000 0.00 0.00 0.00 2.85
2748 3703 1.000955 GAAAGAGGGTGACGAGCAAGA 59.999 52.381 0.00 0.00 0.00 3.02
2749 3704 1.433534 GAAAGAGGGTGACGAGCAAG 58.566 55.000 0.00 0.00 0.00 4.01
2750 3705 0.034896 GGAAAGAGGGTGACGAGCAA 59.965 55.000 0.00 0.00 0.00 3.91
2751 3706 0.832135 AGGAAAGAGGGTGACGAGCA 60.832 55.000 0.00 0.00 0.00 4.26
2752 3707 1.135053 GTAGGAAAGAGGGTGACGAGC 60.135 57.143 0.00 0.00 0.00 5.03
2753 3708 1.132643 CGTAGGAAAGAGGGTGACGAG 59.867 57.143 0.00 0.00 0.00 4.18
2754 3709 1.171308 CGTAGGAAAGAGGGTGACGA 58.829 55.000 0.00 0.00 0.00 4.20
2755 3710 0.458025 GCGTAGGAAAGAGGGTGACG 60.458 60.000 0.00 0.00 0.00 4.35
2756 3711 0.896226 AGCGTAGGAAAGAGGGTGAC 59.104 55.000 0.00 0.00 0.00 3.67
2757 3712 1.640917 AAGCGTAGGAAAGAGGGTGA 58.359 50.000 0.00 0.00 0.00 4.02
2758 3713 2.232941 TGTAAGCGTAGGAAAGAGGGTG 59.767 50.000 0.00 0.00 0.00 4.61
2759 3714 2.532843 TGTAAGCGTAGGAAAGAGGGT 58.467 47.619 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.