Multiple sequence alignment - TraesCS1D01G003000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G003000 chr1D 100.000 4771 0 0 1 4771 698208 693438 0.000000e+00 8811.0
1 TraesCS1D01G003000 chr1D 87.456 2854 326 14 1206 4050 494547887 494550717 0.000000e+00 3258.0
2 TraesCS1D01G003000 chr1D 84.835 2842 384 25 1206 4025 448180 450996 0.000000e+00 2817.0
3 TraesCS1D01G003000 chr1D 86.278 2587 302 28 1445 3990 619904 617330 0.000000e+00 2761.0
4 TraesCS1D01G003000 chr1D 85.482 2583 350 21 1206 3771 460171 462745 0.000000e+00 2669.0
5 TraesCS1D01G003000 chr1D 86.326 2428 316 13 1445 3860 648799 651222 0.000000e+00 2630.0
6 TraesCS1D01G003000 chr1D 86.069 2053 280 6 1443 3493 393464 395512 0.000000e+00 2202.0
7 TraesCS1D01G003000 chr1D 93.101 1174 40 6 1 1133 182698183 182699356 0.000000e+00 1681.0
8 TraesCS1D01G003000 chr1D 88.288 555 52 5 5 559 438565066 438565607 0.000000e+00 652.0
9 TraesCS1D01G003000 chr1D 84.777 381 39 8 4051 4420 615760 615388 9.760000e-97 364.0
10 TraesCS1D01G003000 chr1D 83.186 226 36 2 4434 4659 615321 615098 6.260000e-49 206.0
11 TraesCS1D01G003000 chr1D 85.119 168 23 2 1275 1442 393226 393391 2.280000e-38 171.0
12 TraesCS1D01G003000 chr1D 91.111 45 3 1 3857 3900 220062156 220062112 5.160000e-05 60.2
13 TraesCS1D01G003000 chr1B 86.905 2856 337 19 1206 4050 687786426 687789255 0.000000e+00 3168.0
14 TraesCS1D01G003000 chr1B 85.748 2575 311 32 1445 3984 4115772 4118325 0.000000e+00 2671.0
15 TraesCS1D01G003000 chr1B 86.061 2475 297 26 1448 3885 4482431 4479968 0.000000e+00 2615.0
16 TraesCS1D01G003000 chr1B 86.738 2330 300 7 1448 3771 4509597 4507271 0.000000e+00 2582.0
17 TraesCS1D01G003000 chr1B 85.017 2583 337 28 1448 3990 4560402 4557830 0.000000e+00 2580.0
18 TraesCS1D01G003000 chr1B 86.532 2324 306 7 1445 3764 3952388 3954708 0.000000e+00 2551.0
19 TraesCS1D01G003000 chr1B 88.735 577 46 11 1 562 265017809 265017237 0.000000e+00 688.0
20 TraesCS1D01G003000 chr1B 83.558 371 44 6 4051 4412 4478357 4477995 9.900000e-87 331.0
21 TraesCS1D01G003000 chr1B 86.219 283 35 3 4052 4331 4126584 4126865 2.160000e-78 303.0
22 TraesCS1D01G003000 chr1B 87.815 238 25 3 4097 4331 4556147 4555911 4.700000e-70 276.0
23 TraesCS1D01G003000 chr1B 91.623 191 16 0 4440 4630 4477913 4477723 1.020000e-66 265.0
24 TraesCS1D01G003000 chr1B 84.249 273 32 3 4062 4331 4031265 4031529 6.130000e-64 255.0
25 TraesCS1D01G003000 chr1B 84.337 249 39 0 1207 1455 4855459 4855211 1.330000e-60 244.0
26 TraesCS1D01G003000 chr1B 80.827 266 41 6 3790 4050 4759006 4758746 2.910000e-47 200.0
27 TraesCS1D01G003000 chr1B 83.673 196 30 1 4464 4659 4031713 4031906 2.930000e-42 183.0
28 TraesCS1D01G003000 chr1B 76.901 355 56 20 1217 1558 3983694 3984035 1.360000e-40 178.0
29 TraesCS1D01G003000 chr1B 79.835 243 47 2 1142 1383 46825179 46824938 4.910000e-40 176.0
30 TraesCS1D01G003000 chr1B 82.653 196 27 5 4468 4659 3947602 3947794 2.950000e-37 167.0
31 TraesCS1D01G003000 chr1B 79.149 235 43 4 1215 1446 4115469 4115700 1.780000e-34 158.0
32 TraesCS1D01G003000 chr1B 85.517 145 19 2 4516 4659 4819058 4818915 2.970000e-32 150.0
33 TraesCS1D01G003000 chr1B 88.889 90 8 2 4051 4140 4188782 4188869 5.050000e-20 110.0
34 TraesCS1D01G003000 chr1B 81.905 105 16 2 3946 4050 3998437 3998538 8.510000e-13 86.1
35 TraesCS1D01G003000 chr1A 86.888 2593 312 21 1448 4025 3655977 3653398 0.000000e+00 2880.0
36 TraesCS1D01G003000 chr1A 85.276 2805 364 36 1215 3990 3680424 3677640 0.000000e+00 2846.0
37 TraesCS1D01G003000 chr1A 86.270 2520 309 21 1445 3933 2975256 2977769 0.000000e+00 2702.0
38 TraesCS1D01G003000 chr1A 85.374 629 92 0 1206 1834 593290104 593290732 0.000000e+00 652.0
39 TraesCS1D01G003000 chr1A 84.054 370 43 6 4051 4412 2979355 2979716 4.570000e-90 342.0
40 TraesCS1D01G003000 chr1A 87.413 286 28 6 4052 4331 3676190 3675907 5.960000e-84 322.0
41 TraesCS1D01G003000 chr1A 85.443 316 35 7 4100 4412 3449361 3449054 7.700000e-83 318.0
42 TraesCS1D01G003000 chr1A 85.171 263 36 2 3790 4049 3669097 3668835 2.830000e-67 267.0
43 TraesCS1D01G003000 chr1A 91.099 191 17 0 4440 4630 2979798 2979988 4.740000e-65 259.0
44 TraesCS1D01G003000 chr1A 84.711 242 23 5 4095 4325 2987496 2987734 3.710000e-56 230.0
45 TraesCS1D01G003000 chr1A 82.642 265 38 5 3790 4050 3488365 3488105 1.340000e-55 228.0
46 TraesCS1D01G003000 chr1A 83.913 230 33 2 4441 4669 3448970 3448744 2.890000e-52 217.0
47 TraesCS1D01G003000 chr1A 82.490 257 33 7 3790 4041 2986019 2986268 1.040000e-51 215.0
48 TraesCS1D01G003000 chr1A 84.360 211 29 4 1247 1455 3701450 3701242 2.250000e-48 204.0
49 TraesCS1D01G003000 chr1A 82.328 232 33 4 4434 4659 27217999 27218228 1.350000e-45 195.0
50 TraesCS1D01G003000 chr1A 89.189 111 12 0 4516 4626 2987951 2988061 6.440000e-29 139.0
51 TraesCS1D01G003000 chr1A 80.986 142 15 5 3728 3860 3500375 3500237 8.450000e-18 102.0
52 TraesCS1D01G003000 chr1A 89.286 84 5 3 4251 4331 3659280 3659198 8.450000e-18 102.0
53 TraesCS1D01G003000 chr3D 87.154 2312 284 8 1448 3752 560056873 560054568 0.000000e+00 2612.0
54 TraesCS1D01G003000 chr3D 93.191 1175 39 6 1 1134 304855516 304854342 0.000000e+00 1688.0
55 TraesCS1D01G003000 chr3D 92.596 1175 45 12 1 1133 122020971 122019797 0.000000e+00 1650.0
56 TraesCS1D01G003000 chr3D 92.119 1180 47 9 4 1138 55663558 55664736 0.000000e+00 1622.0
57 TraesCS1D01G003000 chr3D 87.104 915 78 17 1 893 116240525 116241421 0.000000e+00 1000.0
58 TraesCS1D01G003000 chr3D 87.455 558 62 5 5 562 111668974 111668425 1.870000e-178 636.0
59 TraesCS1D01G003000 chr3D 77.682 233 50 2 1215 1446 560057178 560056947 1.790000e-29 141.0
60 TraesCS1D01G003000 chr3D 93.333 45 2 1 3864 3907 12424549 12424505 1.110000e-06 65.8
61 TraesCS1D01G003000 chr2D 93.617 1175 34 7 1 1134 369231523 369232697 0.000000e+00 1716.0
62 TraesCS1D01G003000 chr5D 93.112 1176 40 5 1 1135 409933320 409934495 0.000000e+00 1685.0
63 TraesCS1D01G003000 chr4D 92.930 1174 42 4 1 1133 37467365 37466192 0.000000e+00 1670.0
64 TraesCS1D01G003000 chr4D 89.520 563 45 8 1 559 223851754 223852306 0.000000e+00 701.0
65 TraesCS1D01G003000 chr5A 93.043 1150 62 6 1 1134 636917134 636918281 0.000000e+00 1664.0
66 TraesCS1D01G003000 chr7D 92.681 1175 44 17 1 1134 467964590 467965763 0.000000e+00 1655.0
67 TraesCS1D01G003000 chr6D 86.354 916 72 21 1 893 151873377 151874262 0.000000e+00 950.0
68 TraesCS1D01G003000 chr6D 89.408 557 42 9 5 559 194430336 194430877 0.000000e+00 686.0
69 TraesCS1D01G003000 chr7A 84.560 978 103 25 1 950 498511217 498512174 0.000000e+00 926.0
70 TraesCS1D01G003000 chr5B 91.055 559 41 5 1 559 147655384 147655933 0.000000e+00 747.0
71 TraesCS1D01G003000 chr5B 90.468 577 36 12 1 562 583966669 583966097 0.000000e+00 743.0
72 TraesCS1D01G003000 chr2B 88.448 554 53 6 6 559 444259967 444260509 0.000000e+00 658.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G003000 chr1D 693438 698208 4770 True 8811.000000 8811 100.000000 1 4771 1 chr1D.!!$R1 4770
1 TraesCS1D01G003000 chr1D 494547887 494550717 2830 False 3258.000000 3258 87.456000 1206 4050 1 chr1D.!!$F6 2844
2 TraesCS1D01G003000 chr1D 448180 450996 2816 False 2817.000000 2817 84.835000 1206 4025 1 chr1D.!!$F1 2819
3 TraesCS1D01G003000 chr1D 460171 462745 2574 False 2669.000000 2669 85.482000 1206 3771 1 chr1D.!!$F2 2565
4 TraesCS1D01G003000 chr1D 648799 651222 2423 False 2630.000000 2630 86.326000 1445 3860 1 chr1D.!!$F3 2415
5 TraesCS1D01G003000 chr1D 182698183 182699356 1173 False 1681.000000 1681 93.101000 1 1133 1 chr1D.!!$F4 1132
6 TraesCS1D01G003000 chr1D 393226 395512 2286 False 1186.500000 2202 85.594000 1275 3493 2 chr1D.!!$F7 2218
7 TraesCS1D01G003000 chr1D 615098 619904 4806 True 1110.333333 2761 84.747000 1445 4659 3 chr1D.!!$R3 3214
8 TraesCS1D01G003000 chr1D 438565066 438565607 541 False 652.000000 652 88.288000 5 559 1 chr1D.!!$F5 554
9 TraesCS1D01G003000 chr1B 687786426 687789255 2829 False 3168.000000 3168 86.905000 1206 4050 1 chr1B.!!$F7 2844
10 TraesCS1D01G003000 chr1B 4507271 4509597 2326 True 2582.000000 2582 86.738000 1448 3771 1 chr1B.!!$R1 2323
11 TraesCS1D01G003000 chr1B 3952388 3954708 2320 False 2551.000000 2551 86.532000 1445 3764 1 chr1B.!!$F2 2319
12 TraesCS1D01G003000 chr1B 4555911 4560402 4491 True 1428.000000 2580 86.416000 1448 4331 2 chr1B.!!$R8 2883
13 TraesCS1D01G003000 chr1B 4115469 4118325 2856 False 1414.500000 2671 82.448500 1215 3984 2 chr1B.!!$F9 2769
14 TraesCS1D01G003000 chr1B 4477723 4482431 4708 True 1070.333333 2615 87.080667 1448 4630 3 chr1B.!!$R7 3182
15 TraesCS1D01G003000 chr1B 265017237 265017809 572 True 688.000000 688 88.735000 1 562 1 chr1B.!!$R6 561
16 TraesCS1D01G003000 chr1B 4031265 4031906 641 False 219.000000 255 83.961000 4062 4659 2 chr1B.!!$F8 597
17 TraesCS1D01G003000 chr1A 3675907 3680424 4517 True 1584.000000 2846 86.344500 1215 4331 2 chr1A.!!$R7 3116
18 TraesCS1D01G003000 chr1A 3653398 3659280 5882 True 1491.000000 2880 88.087000 1448 4331 2 chr1A.!!$R6 2883
19 TraesCS1D01G003000 chr1A 2975256 2979988 4732 False 1101.000000 2702 87.141000 1445 4630 3 chr1A.!!$F3 3185
20 TraesCS1D01G003000 chr1A 593290104 593290732 628 False 652.000000 652 85.374000 1206 1834 1 chr1A.!!$F2 628
21 TraesCS1D01G003000 chr1A 3448744 3449361 617 True 267.500000 318 84.678000 4100 4669 2 chr1A.!!$R5 569
22 TraesCS1D01G003000 chr3D 304854342 304855516 1174 True 1688.000000 1688 93.191000 1 1134 1 chr3D.!!$R4 1133
23 TraesCS1D01G003000 chr3D 122019797 122020971 1174 True 1650.000000 1650 92.596000 1 1133 1 chr3D.!!$R3 1132
24 TraesCS1D01G003000 chr3D 55663558 55664736 1178 False 1622.000000 1622 92.119000 4 1138 1 chr3D.!!$F1 1134
25 TraesCS1D01G003000 chr3D 560054568 560057178 2610 True 1376.500000 2612 82.418000 1215 3752 2 chr3D.!!$R5 2537
26 TraesCS1D01G003000 chr3D 116240525 116241421 896 False 1000.000000 1000 87.104000 1 893 1 chr3D.!!$F2 892
27 TraesCS1D01G003000 chr3D 111668425 111668974 549 True 636.000000 636 87.455000 5 562 1 chr3D.!!$R2 557
28 TraesCS1D01G003000 chr2D 369231523 369232697 1174 False 1716.000000 1716 93.617000 1 1134 1 chr2D.!!$F1 1133
29 TraesCS1D01G003000 chr5D 409933320 409934495 1175 False 1685.000000 1685 93.112000 1 1135 1 chr5D.!!$F1 1134
30 TraesCS1D01G003000 chr4D 37466192 37467365 1173 True 1670.000000 1670 92.930000 1 1133 1 chr4D.!!$R1 1132
31 TraesCS1D01G003000 chr4D 223851754 223852306 552 False 701.000000 701 89.520000 1 559 1 chr4D.!!$F1 558
32 TraesCS1D01G003000 chr5A 636917134 636918281 1147 False 1664.000000 1664 93.043000 1 1134 1 chr5A.!!$F1 1133
33 TraesCS1D01G003000 chr7D 467964590 467965763 1173 False 1655.000000 1655 92.681000 1 1134 1 chr7D.!!$F1 1133
34 TraesCS1D01G003000 chr6D 151873377 151874262 885 False 950.000000 950 86.354000 1 893 1 chr6D.!!$F1 892
35 TraesCS1D01G003000 chr6D 194430336 194430877 541 False 686.000000 686 89.408000 5 559 1 chr6D.!!$F2 554
36 TraesCS1D01G003000 chr7A 498511217 498512174 957 False 926.000000 926 84.560000 1 950 1 chr7A.!!$F1 949
37 TraesCS1D01G003000 chr5B 147655384 147655933 549 False 747.000000 747 91.055000 1 559 1 chr5B.!!$F1 558
38 TraesCS1D01G003000 chr5B 583966097 583966669 572 True 743.000000 743 90.468000 1 562 1 chr5B.!!$R1 561
39 TraesCS1D01G003000 chr2B 444259967 444260509 542 False 658.000000 658 88.448000 6 559 1 chr2B.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 1045 1.006832 GTATCGCACACGCCTTCATT 58.993 50.0 0.00 0.0 39.84 2.57 F
1867 3728 0.258774 ACTGGATCCGGGGGAAAATG 59.741 55.0 24.68 0.0 34.34 2.32 F
2562 4427 0.474184 CTCTTGTGGTGGGGTTCAGT 59.526 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 3969 0.034186 TTCATGCAGGCCCCTAGTTG 60.034 55.0 0.00 0.0 0.00 3.16 R
3312 5189 0.034756 TGTGTACGCCAGTTCTGCAT 59.965 50.0 3.51 0.0 0.00 3.96 R
4034 5962 0.178992 ATGGGTGTCACAAGTGGGTG 60.179 55.0 5.12 0.0 40.16 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 356 1.271108 TGAACGAACCTGCCATGCTAA 60.271 47.619 0.00 0.00 0.00 3.09
376 397 2.774234 ACCGATCAATGAGTTCCTCCAT 59.226 45.455 0.00 0.00 0.00 3.41
460 486 2.416547 AGAAGACGATCAAACAATGGCG 59.583 45.455 0.00 0.00 34.73 5.69
576 637 4.072088 GAGCGAACGGTTGCCACG 62.072 66.667 9.67 0.00 37.36 4.94
828 890 1.030457 CTTCATCTGGCTGCCCATTC 58.970 55.000 17.53 0.00 41.21 2.67
899 1045 1.006832 GTATCGCACACGCCTTCATT 58.993 50.000 0.00 0.00 39.84 2.57
931 1077 4.515191 CGTTTCTTTTGTTCCTCCTCATCA 59.485 41.667 0.00 0.00 0.00 3.07
1041 1189 5.759963 ACGTTTTATGCATTTCACGGTTTA 58.240 33.333 21.24 0.00 31.93 2.01
1135 1283 2.687842 GCATCCTGCAGTAGTGAGC 58.312 57.895 13.81 4.11 44.26 4.26
1137 1285 1.406614 GCATCCTGCAGTAGTGAGCTT 60.407 52.381 13.81 0.00 44.26 3.74
1138 1286 2.938756 GCATCCTGCAGTAGTGAGCTTT 60.939 50.000 13.81 0.00 44.26 3.51
1139 1287 2.462456 TCCTGCAGTAGTGAGCTTTG 57.538 50.000 13.81 0.00 0.00 2.77
1140 1288 1.694150 TCCTGCAGTAGTGAGCTTTGT 59.306 47.619 13.81 0.00 0.00 2.83
1141 1289 2.104792 TCCTGCAGTAGTGAGCTTTGTT 59.895 45.455 13.81 0.00 0.00 2.83
1142 1290 2.481952 CCTGCAGTAGTGAGCTTTGTTC 59.518 50.000 13.81 0.00 0.00 3.18
1143 1291 3.133691 CTGCAGTAGTGAGCTTTGTTCA 58.866 45.455 5.25 0.00 0.00 3.18
1144 1292 3.540617 TGCAGTAGTGAGCTTTGTTCAA 58.459 40.909 0.42 0.00 0.00 2.69
1145 1293 3.312421 TGCAGTAGTGAGCTTTGTTCAAC 59.688 43.478 0.42 0.00 0.00 3.18
1146 1294 3.561725 GCAGTAGTGAGCTTTGTTCAACT 59.438 43.478 0.42 0.00 0.00 3.16
1147 1295 4.553547 GCAGTAGTGAGCTTTGTTCAACTG 60.554 45.833 0.42 10.03 35.90 3.16
1148 1296 3.561725 AGTAGTGAGCTTTGTTCAACTGC 59.438 43.478 0.00 0.00 0.00 4.40
1149 1297 2.648059 AGTGAGCTTTGTTCAACTGCT 58.352 42.857 10.39 10.39 36.63 4.24
1150 1298 3.019564 AGTGAGCTTTGTTCAACTGCTT 58.980 40.909 11.39 0.00 33.83 3.91
1151 1299 3.445096 AGTGAGCTTTGTTCAACTGCTTT 59.555 39.130 11.39 2.48 33.83 3.51
1152 1300 4.082026 AGTGAGCTTTGTTCAACTGCTTTT 60.082 37.500 11.39 2.24 33.83 2.27
1153 1301 4.627035 GTGAGCTTTGTTCAACTGCTTTTT 59.373 37.500 11.39 0.00 33.83 1.94
1154 1302 4.864247 TGAGCTTTGTTCAACTGCTTTTTC 59.136 37.500 11.39 3.45 33.83 2.29
1155 1303 4.819769 AGCTTTGTTCAACTGCTTTTTCA 58.180 34.783 6.47 0.00 0.00 2.69
1156 1304 4.866486 AGCTTTGTTCAACTGCTTTTTCAG 59.134 37.500 6.47 0.00 39.86 3.02
1159 1307 4.370364 TGTTCAACTGCTTTTTCAGGTC 57.630 40.909 0.00 0.00 38.36 3.85
1160 1308 3.130340 TGTTCAACTGCTTTTTCAGGTCC 59.870 43.478 0.00 0.00 38.36 4.46
1162 1310 3.360867 TCAACTGCTTTTTCAGGTCCAA 58.639 40.909 0.00 0.00 38.36 3.53
1163 1311 3.960102 TCAACTGCTTTTTCAGGTCCAAT 59.040 39.130 0.00 0.00 38.36 3.16
1165 1313 4.590850 ACTGCTTTTTCAGGTCCAATTC 57.409 40.909 0.00 0.00 38.36 2.17
1166 1314 3.321968 ACTGCTTTTTCAGGTCCAATTCC 59.678 43.478 0.00 0.00 38.36 3.01
1167 1315 3.303938 TGCTTTTTCAGGTCCAATTCCA 58.696 40.909 0.00 0.00 0.00 3.53
1169 1317 4.347583 TGCTTTTTCAGGTCCAATTCCAAT 59.652 37.500 0.00 0.00 0.00 3.16
1171 1319 5.279657 GCTTTTTCAGGTCCAATTCCAATCT 60.280 40.000 0.00 0.00 0.00 2.40
1172 1320 6.742363 GCTTTTTCAGGTCCAATTCCAATCTT 60.742 38.462 0.00 0.00 0.00 2.40
1173 1321 5.982890 TTTCAGGTCCAATTCCAATCTTC 57.017 39.130 0.00 0.00 0.00 2.87
1175 1323 5.197224 TCAGGTCCAATTCCAATCTTCAT 57.803 39.130 0.00 0.00 0.00 2.57
1176 1324 5.195940 TCAGGTCCAATTCCAATCTTCATC 58.804 41.667 0.00 0.00 0.00 2.92
1177 1325 4.951715 CAGGTCCAATTCCAATCTTCATCA 59.048 41.667 0.00 0.00 0.00 3.07
1178 1326 4.952335 AGGTCCAATTCCAATCTTCATCAC 59.048 41.667 0.00 0.00 0.00 3.06
1179 1327 4.706476 GGTCCAATTCCAATCTTCATCACA 59.294 41.667 0.00 0.00 0.00 3.58
1180 1328 5.185635 GGTCCAATTCCAATCTTCATCACAA 59.814 40.000 0.00 0.00 0.00 3.33
1185 1333 7.705325 CCAATTCCAATCTTCATCACAAATCTC 59.295 37.037 0.00 0.00 0.00 2.75
1186 1334 7.949690 ATTCCAATCTTCATCACAAATCTCA 57.050 32.000 0.00 0.00 0.00 3.27
1187 1335 6.748333 TCCAATCTTCATCACAAATCTCAC 57.252 37.500 0.00 0.00 0.00 3.51
1188 1336 6.240145 TCCAATCTTCATCACAAATCTCACA 58.760 36.000 0.00 0.00 0.00 3.58
1189 1337 6.716173 TCCAATCTTCATCACAAATCTCACAA 59.284 34.615 0.00 0.00 0.00 3.33
1190 1338 7.231115 TCCAATCTTCATCACAAATCTCACAAA 59.769 33.333 0.00 0.00 0.00 2.83
1191 1339 7.541091 CCAATCTTCATCACAAATCTCACAAAG 59.459 37.037 0.00 0.00 0.00 2.77
1192 1340 7.991084 ATCTTCATCACAAATCTCACAAAGA 57.009 32.000 0.00 0.00 38.72 2.52
1194 1342 7.813645 TCTTCATCACAAATCTCACAAAGATG 58.186 34.615 0.00 0.00 44.26 2.90
1195 1343 6.505044 TCATCACAAATCTCACAAAGATGG 57.495 37.500 0.00 0.00 44.26 3.51
1197 1345 5.947228 TCACAAATCTCACAAAGATGGAC 57.053 39.130 0.00 0.00 44.26 4.02
1198 1346 5.375773 TCACAAATCTCACAAAGATGGACA 58.624 37.500 0.00 0.00 44.26 4.02
1200 1348 6.491062 TCACAAATCTCACAAAGATGGACATT 59.509 34.615 0.00 0.00 44.26 2.71
1201 1349 6.805271 CACAAATCTCACAAAGATGGACATTC 59.195 38.462 0.00 0.00 44.26 2.67
1203 1351 7.884877 ACAAATCTCACAAAGATGGACATTCTA 59.115 33.333 0.00 0.00 44.26 2.10
1204 1352 8.733458 CAAATCTCACAAAGATGGACATTCTAA 58.267 33.333 0.00 0.00 44.26 2.10
1211 1359 7.064371 CACAAAGATGGACATTCTAACTCTCTG 59.936 40.741 0.00 0.00 0.00 3.35
1233 1381 4.488879 GTGAAAATCAAATCACAGGCTCC 58.511 43.478 1.30 0.00 44.19 4.70
1236 1384 4.996788 AAATCAAATCACAGGCTCCATC 57.003 40.909 0.00 0.00 0.00 3.51
1242 1390 3.402681 ACAGGCTCCATCCCACCG 61.403 66.667 0.00 0.00 0.00 4.94
1246 1394 4.424711 GCTCCATCCCACCGGCAA 62.425 66.667 0.00 0.00 0.00 4.52
1268 1416 1.209019 AGGCAACCTCACTATGCTCAG 59.791 52.381 0.00 0.00 39.94 3.35
1281 1429 5.477510 ACTATGCTCAGTGAACTTTCTCTG 58.522 41.667 12.76 12.76 45.37 3.35
1303 1451 6.040278 TCTGTTTACAAATCAAATCACAGGCA 59.960 34.615 0.00 0.00 0.00 4.75
1342 1490 3.009723 GGCATCTTGTCGAATCTCCAAA 58.990 45.455 0.00 0.00 0.00 3.28
1402 1550 6.374417 TTCCTGACAGCTTAGGAAATACTT 57.626 37.500 17.30 0.00 46.97 2.24
1427 1575 6.598457 TCCAAGCTAGTAGTACTACAACTCTG 59.402 42.308 29.87 20.64 38.48 3.35
1428 1576 6.183360 CCAAGCTAGTAGTACTACAACTCTGG 60.183 46.154 29.87 24.29 38.48 3.86
1567 3424 5.942961 TCATAAACCTTGTTGTACTTGGGA 58.057 37.500 0.00 0.00 0.00 4.37
1691 3548 8.960591 CATTCCAAGGAGTTTAAAGACATGTAT 58.039 33.333 0.00 0.00 0.00 2.29
1734 3591 3.211045 TGAGTCAAACCAACTAACAGGC 58.789 45.455 0.00 0.00 0.00 4.85
1737 3594 2.032290 GTCAAACCAACTAACAGGCGAC 60.032 50.000 0.00 0.00 0.00 5.19
1838 3695 3.117738 CCAAATCTAGGTGCATCTTCCCT 60.118 47.826 3.93 0.37 0.00 4.20
1851 3708 5.221521 TGCATCTTCCCTGCTAATAGTACTG 60.222 44.000 5.39 0.00 40.34 2.74
1852 3713 5.788450 CATCTTCCCTGCTAATAGTACTGG 58.212 45.833 5.39 0.00 0.00 4.00
1856 3717 4.417437 TCCCTGCTAATAGTACTGGATCC 58.583 47.826 4.20 4.20 0.00 3.36
1857 3718 3.193691 CCCTGCTAATAGTACTGGATCCG 59.806 52.174 7.39 4.62 0.00 4.18
1860 3721 2.496470 GCTAATAGTACTGGATCCGGGG 59.504 54.545 24.68 11.17 0.00 5.73
1861 3722 2.025636 AATAGTACTGGATCCGGGGG 57.974 55.000 24.68 8.70 0.00 5.40
1867 3728 0.258774 ACTGGATCCGGGGGAAAATG 59.741 55.000 24.68 0.00 34.34 2.32
1906 3767 4.336280 ACCTCCAATCCTTTCTAAACTGC 58.664 43.478 0.00 0.00 0.00 4.40
1970 3832 4.590647 TGGTGAGATCCCACAAGATATCTC 59.409 45.833 9.77 0.00 43.00 2.75
2054 3916 6.478344 CCTACACAGATAGAAAAGCTAAGCAG 59.522 42.308 0.00 0.00 31.66 4.24
2078 3940 8.132362 CAGTCTAGAATACCTTGATATATCCGC 58.868 40.741 10.25 0.00 0.00 5.54
2083 3945 7.680730 AGAATACCTTGATATATCCGCAAACT 58.319 34.615 10.25 0.00 0.00 2.66
2107 3969 3.133721 ACTGAGTGGATCAATACCTGAGC 59.866 47.826 0.00 0.00 39.89 4.26
2131 3993 0.704076 AGGGGCCTGCATGAAACTAA 59.296 50.000 0.84 0.00 0.00 2.24
2132 3994 1.106285 GGGGCCTGCATGAAACTAAG 58.894 55.000 0.84 0.00 0.00 2.18
2200 4062 2.159254 GCGATTGGAAATTTAGCAGGCA 60.159 45.455 0.00 0.00 0.00 4.75
2292 4154 7.993101 TGGAGATGCTAGAATTTCTGAATTTG 58.007 34.615 9.22 0.00 35.65 2.32
2342 4204 1.217244 CCTCCTTTGCAAGCATGGC 59.783 57.895 0.00 0.00 33.57 4.40
2361 4223 1.334149 GCGAGCCTTTCAACACTTGAC 60.334 52.381 0.00 0.00 39.87 3.18
2385 4247 3.009033 TGTCCTACAATGACTTGGAAGGG 59.991 47.826 8.32 0.00 38.88 3.95
2438 4300 5.546526 TGCTTCAACAAGTTGGTTTCTTTT 58.453 33.333 12.54 0.00 40.78 2.27
2468 4330 3.181458 GGTCTGTGTGGTAACCTTTCTGA 60.181 47.826 0.00 0.00 0.00 3.27
2492 4354 4.074970 CTGCCACCTTGTTATTCAACTCT 58.925 43.478 0.00 0.00 35.56 3.24
2518 4383 2.009774 CTGCTCACCATAAACGGAAGG 58.990 52.381 0.00 0.00 0.00 3.46
2528 4393 5.184287 ACCATAAACGGAAGGTAATTGGTTG 59.816 40.000 0.00 0.00 31.32 3.77
2535 4400 4.218852 CGGAAGGTAATTGGTTGGCTTTTA 59.781 41.667 0.00 0.00 0.00 1.52
2556 4421 0.604578 CAATTGCTCTTGTGGTGGGG 59.395 55.000 0.00 0.00 0.00 4.96
2562 4427 0.474184 CTCTTGTGGTGGGGTTCAGT 59.526 55.000 0.00 0.00 0.00 3.41
2579 4444 4.177165 TCAGTATTGTTGCTGCAATTGG 57.823 40.909 19.11 4.83 39.50 3.16
2593 4458 6.127394 TGCTGCAATTGGTGTCATAATAATGT 60.127 34.615 7.72 0.00 34.50 2.71
2654 4519 3.623453 GCTGAAGCAAGGGACCTATTCTT 60.623 47.826 0.00 6.12 41.59 2.52
2822 4693 2.093764 AGCTTCATCAGACCGAAGAAGG 60.094 50.000 13.45 0.00 45.48 3.46
2871 4742 8.702438 CACAGTGAAATGGAAATTTTATCACAC 58.298 33.333 17.29 14.72 0.00 3.82
2877 4748 6.773976 ATGGAAATTTTATCACACATCCGT 57.226 33.333 0.00 0.00 0.00 4.69
2943 4814 9.186323 CCAGTGTATAAATTTCTCGTCTATGAG 57.814 37.037 0.00 0.00 37.33 2.90
2985 4856 2.094752 CCACGGGACATTGGAAAATGAC 60.095 50.000 5.49 0.00 33.25 3.06
3022 4893 8.497745 AGGAATTAGATTGGCAGAAGAGAATTA 58.502 33.333 0.00 0.00 0.00 1.40
3097 4968 5.420421 AGTCCACCTATAATCCATCGAGATG 59.580 44.000 6.12 6.12 38.51 2.90
3264 5136 2.701073 ACCTTACTTCTCACGTCACG 57.299 50.000 0.00 0.00 0.00 4.35
3279 5152 2.415491 CGTCACGAGCATTCACCTCTAA 60.415 50.000 0.00 0.00 0.00 2.10
3361 5238 6.159293 TGTGACAGAGAAATGTGATGTCTAC 58.841 40.000 5.37 3.32 40.67 2.59
3381 5258 2.727544 CTTTGGGGTGGTTGTGCG 59.272 61.111 0.00 0.00 0.00 5.34
3447 5324 0.250727 TTCTCAAGCGGGGAACAAGG 60.251 55.000 0.00 0.00 0.00 3.61
3448 5325 2.282180 TCAAGCGGGGAACAAGGC 60.282 61.111 0.00 0.00 0.00 4.35
3453 5330 3.451894 CGGGGAACAAGGCATGCC 61.452 66.667 30.12 30.12 0.00 4.40
3483 5360 2.119484 ATTCTGGACCAACGGCCGAA 62.119 55.000 35.90 12.92 0.00 4.30
3484 5361 2.046314 CTGGACCAACGGCCGAAT 60.046 61.111 35.90 18.04 0.00 3.34
3502 5379 3.551551 GAATACGCCAACAACAACAGAC 58.448 45.455 0.00 0.00 0.00 3.51
3521 5398 2.294074 ACGAGAGTAGCTTAGCTCTGG 58.706 52.381 11.09 16.69 46.88 3.86
3530 5407 2.170187 AGCTTAGCTCTGGTCATCAAGG 59.830 50.000 0.00 0.00 30.62 3.61
3535 5412 0.325933 CTCTGGTCATCAAGGTGGCA 59.674 55.000 0.00 0.00 0.00 4.92
3536 5413 0.770499 TCTGGTCATCAAGGTGGCAA 59.230 50.000 0.00 0.00 0.00 4.52
3564 5441 5.047566 TGTTTGGAATCTTCTCCACAAGA 57.952 39.130 0.00 0.00 45.37 3.02
3627 5504 0.398381 CCCTCTTCTAGCTCCTGCCT 60.398 60.000 0.00 0.00 40.80 4.75
3660 5541 3.189287 AGTGCACTTACATTACAGCAAGC 59.811 43.478 15.25 0.00 33.37 4.01
3718 5601 3.323774 TCCAGGGTAATCGTAGTGGAT 57.676 47.619 0.00 0.00 0.00 3.41
3744 5633 4.913345 CGATTTAGGTTTCCGTTTTTGACC 59.087 41.667 0.00 0.00 0.00 4.02
3804 5718 1.066143 ACACGGGATGAGTTGATGACC 60.066 52.381 0.00 0.00 0.00 4.02
3822 5737 7.497595 TGATGACCCATTGTAAGTCTATGTAC 58.502 38.462 0.00 0.00 0.00 2.90
3826 5741 6.113411 ACCCATTGTAAGTCTATGTACTTGC 58.887 40.000 0.00 4.54 39.95 4.01
3835 5750 4.158764 AGTCTATGTACTTGCAGACACTCC 59.841 45.833 11.97 0.00 39.90 3.85
3837 5752 2.820059 TGTACTTGCAGACACTCCTG 57.180 50.000 0.00 0.00 37.23 3.86
3841 5760 1.227943 TTGCAGACACTCCTGGCAC 60.228 57.895 0.00 0.00 34.82 5.01
3842 5761 1.981951 TTGCAGACACTCCTGGCACA 61.982 55.000 0.00 0.00 34.82 4.57
3855 5774 1.360192 GGCACAGTGAAAGCACCAC 59.640 57.895 4.15 0.00 46.32 4.16
3901 5820 5.593010 CAAGGGTTTTCCACGTAAAAATGA 58.407 37.500 10.21 0.00 42.91 2.57
3907 5831 6.697892 GGTTTTCCACGTAAAAATGATTGTCA 59.302 34.615 10.21 0.00 40.31 3.58
3918 5842 7.718272 AAAAATGATTGTCATGTGTTCTTGG 57.282 32.000 0.00 0.00 37.15 3.61
3924 5848 7.950512 TGATTGTCATGTGTTCTTGGTATTTT 58.049 30.769 0.00 0.00 0.00 1.82
3925 5849 8.081633 TGATTGTCATGTGTTCTTGGTATTTTC 58.918 33.333 0.00 0.00 0.00 2.29
3934 5858 6.695713 GTGTTCTTGGTATTTTCCTGTTTGTC 59.304 38.462 0.00 0.00 0.00 3.18
3990 5918 7.745620 AATTTGTTTTGTGGGTTGTTTGTAA 57.254 28.000 0.00 0.00 0.00 2.41
3991 5919 7.745620 ATTTGTTTTGTGGGTTGTTTGTAAA 57.254 28.000 0.00 0.00 0.00 2.01
4025 5953 5.689819 CGGTGCCTATGCTTATATTTGTTC 58.310 41.667 0.00 0.00 38.71 3.18
4041 5969 1.758280 TGTTCAGACGTAACACCCACT 59.242 47.619 0.00 0.00 32.07 4.00
4078 7744 4.873746 TTTCTTCCTAGGGATATCAGCG 57.126 45.455 9.46 0.00 0.00 5.18
4088 7754 5.336150 AGGGATATCAGCGTCATAATCAG 57.664 43.478 4.83 0.00 0.00 2.90
4090 7756 5.952347 AGGGATATCAGCGTCATAATCAGTA 59.048 40.000 4.83 0.00 0.00 2.74
4134 7805 2.372264 CAATTGACATACCTGCTGCCT 58.628 47.619 0.00 0.00 0.00 4.75
4165 7836 2.209064 CTGCTGCATGACCACTTGGC 62.209 60.000 1.31 0.00 39.32 4.52
4196 7867 7.604164 CAGGTAAGTTAAGCTCAGAATCAAGAA 59.396 37.037 0.00 0.00 0.00 2.52
4203 7877 5.280654 AGCTCAGAATCAAGAATCTCCTC 57.719 43.478 0.00 0.00 0.00 3.71
4209 7883 4.464244 AGAATCAAGAATCTCCTCGTGTGA 59.536 41.667 0.00 0.00 0.00 3.58
4213 7887 4.220602 TCAAGAATCTCCTCGTGTGATTGA 59.779 41.667 8.83 0.00 37.32 2.57
4222 7896 4.157105 TCCTCGTGTGATTGAAGATACGAA 59.843 41.667 0.00 0.00 39.62 3.85
4235 7909 7.177832 TGAAGATACGAAGGGACTGAATTTA 57.822 36.000 0.00 0.00 40.86 1.40
4302 7976 9.829507 ATTTTCCAACATACAAAATGAGAACAA 57.170 25.926 0.00 0.00 30.29 2.83
4315 7992 6.757897 AATGAGAACAACAAACAGAGAACA 57.242 33.333 0.00 0.00 0.00 3.18
4325 8002 6.222038 ACAAACAGAGAACAGTCTTGTCTA 57.778 37.500 0.00 0.00 36.23 2.59
4353 8030 9.469807 AAATAAGCAAATGAACGATACACAAAA 57.530 25.926 0.00 0.00 0.00 2.44
4354 8031 9.638239 AATAAGCAAATGAACGATACACAAAAT 57.362 25.926 0.00 0.00 0.00 1.82
4355 8032 7.566858 AAGCAAATGAACGATACACAAAATC 57.433 32.000 0.00 0.00 0.00 2.17
4365 8042 5.046878 ACGATACACAAAATCAGTACAGGGA 60.047 40.000 0.00 0.00 0.00 4.20
4373 8050 6.433093 ACAAAATCAGTACAGGGATTACAACC 59.567 38.462 7.56 0.00 33.57 3.77
4391 8069 1.208259 CCAAAGTGCCAAAGAAACGC 58.792 50.000 0.00 0.00 0.00 4.84
4399 8077 2.622942 TGCCAAAGAAACGCTTCAGATT 59.377 40.909 0.78 0.00 35.24 2.40
4414 8092 8.475639 ACGCTTCAGATTAAATCTTAGACCTAA 58.524 33.333 0.00 0.00 37.58 2.69
4459 8199 4.770531 GGTAAGGAAAACTAGTTGGCCAAT 59.229 41.667 23.66 13.16 0.00 3.16
4512 8263 2.412591 ACAGCATAAGAGCCATACCCT 58.587 47.619 0.00 0.00 34.23 4.34
4533 8284 1.067212 CCATAAGTTCCTCCTCGTCGG 59.933 57.143 0.00 0.00 0.00 4.79
4536 8287 1.533469 AAGTTCCTCCTCGTCGGTGG 61.533 60.000 7.87 7.87 45.92 4.61
4542 8293 1.077285 TCCTCGTCGGTGGCATCTA 60.077 57.895 0.00 0.00 0.00 1.98
4547 8298 1.442148 GTCGGTGGCATCTAGGACC 59.558 63.158 0.00 0.00 0.00 4.46
4557 8308 3.118223 GGCATCTAGGACCTTGTAGCTTT 60.118 47.826 0.00 0.00 0.00 3.51
4564 8315 5.256806 AGGACCTTGTAGCTTTTACCAAT 57.743 39.130 0.00 0.00 0.00 3.16
4565 8316 5.010282 AGGACCTTGTAGCTTTTACCAATG 58.990 41.667 0.00 0.00 0.00 2.82
4601 8352 6.183810 TCATTGCTCACATCCATAAGATCT 57.816 37.500 0.00 0.00 30.59 2.75
4621 8372 1.590932 ATCATCTCGTCTTGCATGCC 58.409 50.000 16.68 0.00 0.00 4.40
4635 8386 2.579207 CATGCCCTGCAGATTTGAAG 57.421 50.000 17.39 0.00 43.65 3.02
4645 8396 4.194640 TGCAGATTTGAAGAGCAGGTATC 58.805 43.478 0.00 0.00 0.00 2.24
4652 8403 4.736126 TGAAGAGCAGGTATCGATTCAA 57.264 40.909 1.71 0.00 0.00 2.69
4653 8404 4.686972 TGAAGAGCAGGTATCGATTCAAG 58.313 43.478 1.71 0.00 0.00 3.02
4660 8411 4.026804 GCAGGTATCGATTCAAGTGTAACG 60.027 45.833 1.71 0.00 45.86 3.18
4661 8412 5.100259 CAGGTATCGATTCAAGTGTAACGT 58.900 41.667 1.71 0.00 45.86 3.99
4664 8415 6.971184 AGGTATCGATTCAAGTGTAACGTAAG 59.029 38.462 1.71 0.00 45.86 2.34
4665 8416 6.968904 GGTATCGATTCAAGTGTAACGTAAGA 59.031 38.462 1.71 0.00 45.86 2.10
4669 8420 7.780313 TCGATTCAAGTGTAACGTAAGAAAAG 58.220 34.615 0.00 0.00 45.86 2.27
4670 8421 6.515340 CGATTCAAGTGTAACGTAAGAAAAGC 59.485 38.462 0.00 0.00 45.86 3.51
4671 8422 6.665474 TTCAAGTGTAACGTAAGAAAAGCA 57.335 33.333 0.00 0.00 45.86 3.91
4672 8423 6.665474 TCAAGTGTAACGTAAGAAAAGCAA 57.335 33.333 0.00 0.00 45.86 3.91
4673 8424 7.254227 TCAAGTGTAACGTAAGAAAAGCAAT 57.746 32.000 0.00 0.00 45.86 3.56
4674 8425 7.349711 TCAAGTGTAACGTAAGAAAAGCAATC 58.650 34.615 0.00 0.00 45.86 2.67
4675 8426 6.854496 AGTGTAACGTAAGAAAAGCAATCA 57.146 33.333 0.00 0.00 45.86 2.57
4676 8427 7.254227 AGTGTAACGTAAGAAAAGCAATCAA 57.746 32.000 0.00 0.00 45.86 2.57
4677 8428 7.699566 AGTGTAACGTAAGAAAAGCAATCAAA 58.300 30.769 0.00 0.00 45.86 2.69
4678 8429 7.642586 AGTGTAACGTAAGAAAAGCAATCAAAC 59.357 33.333 0.00 0.00 45.86 2.93
4679 8430 6.629649 TGTAACGTAAGAAAAGCAATCAAACG 59.370 34.615 0.00 0.00 43.62 3.60
4680 8431 5.412526 ACGTAAGAAAAGCAATCAAACGA 57.587 34.783 13.39 0.00 43.62 3.85
4681 8432 5.440685 ACGTAAGAAAAGCAATCAAACGAG 58.559 37.500 13.39 0.00 43.62 4.18
4682 8433 5.235616 ACGTAAGAAAAGCAATCAAACGAGA 59.764 36.000 13.39 0.00 43.62 4.04
4683 8434 5.785599 CGTAAGAAAAGCAATCAAACGAGAG 59.214 40.000 0.00 0.00 43.02 3.20
4684 8435 4.152607 AGAAAAGCAATCAAACGAGAGC 57.847 40.909 0.00 0.00 0.00 4.09
4685 8436 3.565482 AGAAAAGCAATCAAACGAGAGCA 59.435 39.130 0.00 0.00 0.00 4.26
4686 8437 2.977405 AAGCAATCAAACGAGAGCAC 57.023 45.000 0.00 0.00 0.00 4.40
4687 8438 2.175878 AGCAATCAAACGAGAGCACT 57.824 45.000 0.00 0.00 0.00 4.40
4688 8439 3.319137 AGCAATCAAACGAGAGCACTA 57.681 42.857 0.00 0.00 0.00 2.74
4689 8440 3.664107 AGCAATCAAACGAGAGCACTAA 58.336 40.909 0.00 0.00 0.00 2.24
4690 8441 4.065088 AGCAATCAAACGAGAGCACTAAA 58.935 39.130 0.00 0.00 0.00 1.85
4691 8442 4.083802 AGCAATCAAACGAGAGCACTAAAC 60.084 41.667 0.00 0.00 0.00 2.01
4692 8443 4.083802 GCAATCAAACGAGAGCACTAAACT 60.084 41.667 0.00 0.00 0.00 2.66
4693 8444 5.120208 GCAATCAAACGAGAGCACTAAACTA 59.880 40.000 0.00 0.00 0.00 2.24
4694 8445 6.347402 GCAATCAAACGAGAGCACTAAACTAA 60.347 38.462 0.00 0.00 0.00 2.24
4695 8446 7.624344 GCAATCAAACGAGAGCACTAAACTAAT 60.624 37.037 0.00 0.00 0.00 1.73
4696 8447 8.869897 CAATCAAACGAGAGCACTAAACTAATA 58.130 33.333 0.00 0.00 0.00 0.98
4697 8448 9.601217 AATCAAACGAGAGCACTAAACTAATAT 57.399 29.630 0.00 0.00 0.00 1.28
4699 8450 9.731819 TCAAACGAGAGCACTAAACTAATATAG 57.268 33.333 0.00 0.00 0.00 1.31
4700 8451 8.969267 CAAACGAGAGCACTAAACTAATATAGG 58.031 37.037 0.00 0.00 0.00 2.57
4701 8452 6.679843 ACGAGAGCACTAAACTAATATAGGC 58.320 40.000 0.00 0.00 0.00 3.93
4702 8453 6.490721 ACGAGAGCACTAAACTAATATAGGCT 59.509 38.462 0.00 0.00 32.20 4.58
4703 8454 7.664731 ACGAGAGCACTAAACTAATATAGGCTA 59.335 37.037 0.00 0.00 30.75 3.93
4704 8455 7.964011 CGAGAGCACTAAACTAATATAGGCTAC 59.036 40.741 0.00 0.00 30.75 3.58
4705 8456 8.943594 AGAGCACTAAACTAATATAGGCTACT 57.056 34.615 0.00 0.00 30.75 2.57
4706 8457 8.798402 AGAGCACTAAACTAATATAGGCTACTG 58.202 37.037 0.00 0.00 30.75 2.74
4707 8458 7.379750 AGCACTAAACTAATATAGGCTACTGC 58.620 38.462 0.00 0.00 38.76 4.40
4718 8469 3.339547 GCTACTGCCACCAAAGGAA 57.660 52.632 0.00 0.00 0.00 3.36
4719 8470 1.839424 GCTACTGCCACCAAAGGAAT 58.161 50.000 0.00 0.00 0.00 3.01
4720 8471 1.474077 GCTACTGCCACCAAAGGAATG 59.526 52.381 0.00 0.00 0.00 2.67
4721 8472 2.879756 GCTACTGCCACCAAAGGAATGA 60.880 50.000 0.00 0.00 0.00 2.57
4722 8473 2.610438 ACTGCCACCAAAGGAATGAT 57.390 45.000 0.00 0.00 0.00 2.45
4723 8474 2.893424 ACTGCCACCAAAGGAATGATT 58.107 42.857 0.00 0.00 0.00 2.57
4724 8475 4.046286 ACTGCCACCAAAGGAATGATTA 57.954 40.909 0.00 0.00 0.00 1.75
4725 8476 4.415596 ACTGCCACCAAAGGAATGATTAA 58.584 39.130 0.00 0.00 0.00 1.40
4726 8477 4.837860 ACTGCCACCAAAGGAATGATTAAA 59.162 37.500 0.00 0.00 0.00 1.52
4727 8478 5.484998 ACTGCCACCAAAGGAATGATTAAAT 59.515 36.000 0.00 0.00 0.00 1.40
4728 8479 5.732633 TGCCACCAAAGGAATGATTAAATG 58.267 37.500 0.00 0.00 0.00 2.32
4729 8480 4.571984 GCCACCAAAGGAATGATTAAATGC 59.428 41.667 0.00 0.00 0.00 3.56
4730 8481 5.627503 GCCACCAAAGGAATGATTAAATGCT 60.628 40.000 0.00 0.00 0.00 3.79
4731 8482 6.044682 CCACCAAAGGAATGATTAAATGCTC 58.955 40.000 0.00 0.00 0.00 4.26
4732 8483 6.044682 CACCAAAGGAATGATTAAATGCTCC 58.955 40.000 0.00 0.00 0.00 4.70
4733 8484 5.721000 ACCAAAGGAATGATTAAATGCTCCA 59.279 36.000 0.00 0.00 0.00 3.86
4734 8485 6.127253 ACCAAAGGAATGATTAAATGCTCCAG 60.127 38.462 0.00 0.00 0.00 3.86
4735 8486 6.278363 CAAAGGAATGATTAAATGCTCCAGG 58.722 40.000 0.00 0.00 0.00 4.45
4736 8487 5.393068 AGGAATGATTAAATGCTCCAGGA 57.607 39.130 0.00 0.00 0.00 3.86
4737 8488 5.961897 AGGAATGATTAAATGCTCCAGGAT 58.038 37.500 0.00 0.00 0.00 3.24
4738 8489 7.095183 AGGAATGATTAAATGCTCCAGGATA 57.905 36.000 0.00 0.00 0.00 2.59
4739 8490 7.529555 AGGAATGATTAAATGCTCCAGGATAA 58.470 34.615 0.00 0.00 0.00 1.75
4740 8491 8.175431 AGGAATGATTAAATGCTCCAGGATAAT 58.825 33.333 0.00 0.00 0.00 1.28
4741 8492 8.465201 GGAATGATTAAATGCTCCAGGATAATC 58.535 37.037 10.94 10.94 0.00 1.75
4742 8493 8.945195 AATGATTAAATGCTCCAGGATAATCA 57.055 30.769 18.66 18.66 36.21 2.57
4743 8494 9.543231 AATGATTAAATGCTCCAGGATAATCAT 57.457 29.630 20.58 20.58 40.28 2.45
4744 8495 8.344446 TGATTAAATGCTCCAGGATAATCATG 57.656 34.615 14.68 0.00 30.85 3.07
4764 8515 3.950397 TGGAGAACCAATAACATTCGCT 58.050 40.909 0.00 0.00 43.91 4.93
4765 8516 4.331968 TGGAGAACCAATAACATTCGCTT 58.668 39.130 0.00 0.00 43.91 4.68
4766 8517 4.764823 TGGAGAACCAATAACATTCGCTTT 59.235 37.500 0.00 0.00 43.91 3.51
4767 8518 5.106317 TGGAGAACCAATAACATTCGCTTTC 60.106 40.000 0.00 0.00 43.91 2.62
4768 8519 5.123979 GGAGAACCAATAACATTCGCTTTCT 59.876 40.000 0.00 0.00 35.97 2.52
4769 8520 6.183309 AGAACCAATAACATTCGCTTTCTC 57.817 37.500 0.00 0.00 0.00 2.87
4770 8521 5.940470 AGAACCAATAACATTCGCTTTCTCT 59.060 36.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 234 3.050275 GCCGTGACCTTGCTGACC 61.050 66.667 0.00 0.00 0.00 4.02
349 356 1.153369 CTCATTGATCGGTGCCGGT 60.153 57.895 10.94 2.84 40.25 5.28
376 397 1.600413 CCGATCTGAATGATGACGCGA 60.600 52.381 15.93 0.00 35.14 5.87
460 486 0.112412 TTGCCTTCACCCTTCCTTCC 59.888 55.000 0.00 0.00 0.00 3.46
828 890 4.582701 TGTGATTAGGCAACACAAAAGG 57.417 40.909 0.00 0.00 40.72 3.11
899 1045 0.103937 CAAAAGAAACGGGCAGCCAA 59.896 50.000 15.19 0.00 0.00 4.52
1135 1283 5.170748 ACCTGAAAAAGCAGTTGAACAAAG 58.829 37.500 0.00 0.00 34.06 2.77
1137 1285 4.381505 GGACCTGAAAAAGCAGTTGAACAA 60.382 41.667 0.00 0.00 34.06 2.83
1138 1286 3.130340 GGACCTGAAAAAGCAGTTGAACA 59.870 43.478 0.00 0.00 34.06 3.18
1139 1287 3.130340 TGGACCTGAAAAAGCAGTTGAAC 59.870 43.478 0.00 0.00 34.06 3.18
1140 1288 3.360867 TGGACCTGAAAAAGCAGTTGAA 58.639 40.909 0.00 0.00 34.06 2.69
1141 1289 3.011566 TGGACCTGAAAAAGCAGTTGA 57.988 42.857 0.00 0.00 34.06 3.18
1142 1290 3.799281 TTGGACCTGAAAAAGCAGTTG 57.201 42.857 0.00 0.00 34.06 3.16
1143 1291 4.202253 GGAATTGGACCTGAAAAAGCAGTT 60.202 41.667 0.00 0.00 34.06 3.16
1144 1292 3.321968 GGAATTGGACCTGAAAAAGCAGT 59.678 43.478 0.00 0.00 34.06 4.40
1145 1293 3.321682 TGGAATTGGACCTGAAAAAGCAG 59.678 43.478 0.00 0.00 35.66 4.24
1146 1294 3.303938 TGGAATTGGACCTGAAAAAGCA 58.696 40.909 0.00 0.00 0.00 3.91
1147 1295 4.335400 TTGGAATTGGACCTGAAAAAGC 57.665 40.909 0.00 0.00 0.00 3.51
1148 1296 6.350629 AGATTGGAATTGGACCTGAAAAAG 57.649 37.500 0.00 0.00 0.00 2.27
1149 1297 6.326064 TGAAGATTGGAATTGGACCTGAAAAA 59.674 34.615 0.00 0.00 0.00 1.94
1150 1298 5.837979 TGAAGATTGGAATTGGACCTGAAAA 59.162 36.000 0.00 0.00 0.00 2.29
1151 1299 5.392995 TGAAGATTGGAATTGGACCTGAAA 58.607 37.500 0.00 0.00 0.00 2.69
1152 1300 4.996793 TGAAGATTGGAATTGGACCTGAA 58.003 39.130 0.00 0.00 0.00 3.02
1153 1301 4.656100 TGAAGATTGGAATTGGACCTGA 57.344 40.909 0.00 0.00 0.00 3.86
1154 1302 4.951715 TGATGAAGATTGGAATTGGACCTG 59.048 41.667 0.00 0.00 0.00 4.00
1155 1303 4.952335 GTGATGAAGATTGGAATTGGACCT 59.048 41.667 0.00 0.00 0.00 3.85
1156 1304 4.706476 TGTGATGAAGATTGGAATTGGACC 59.294 41.667 0.00 0.00 0.00 4.46
1159 1307 7.553334 AGATTTGTGATGAAGATTGGAATTGG 58.447 34.615 0.00 0.00 0.00 3.16
1160 1308 8.248253 TGAGATTTGTGATGAAGATTGGAATTG 58.752 33.333 0.00 0.00 0.00 2.32
1162 1310 7.395206 TGTGAGATTTGTGATGAAGATTGGAAT 59.605 33.333 0.00 0.00 0.00 3.01
1163 1311 6.716173 TGTGAGATTTGTGATGAAGATTGGAA 59.284 34.615 0.00 0.00 0.00 3.53
1165 1313 6.505044 TGTGAGATTTGTGATGAAGATTGG 57.495 37.500 0.00 0.00 0.00 3.16
1166 1314 8.294577 TCTTTGTGAGATTTGTGATGAAGATTG 58.705 33.333 0.00 0.00 0.00 2.67
1167 1315 8.400184 TCTTTGTGAGATTTGTGATGAAGATT 57.600 30.769 0.00 0.00 0.00 2.40
1169 1317 7.094506 CCATCTTTGTGAGATTTGTGATGAAGA 60.095 37.037 0.00 0.00 42.55 2.87
1171 1319 6.716173 TCCATCTTTGTGAGATTTGTGATGAA 59.284 34.615 0.00 0.00 42.55 2.57
1172 1320 6.149973 GTCCATCTTTGTGAGATTTGTGATGA 59.850 38.462 0.00 0.00 42.55 2.92
1173 1321 6.072342 TGTCCATCTTTGTGAGATTTGTGATG 60.072 38.462 0.00 0.00 42.55 3.07
1175 1323 5.375773 TGTCCATCTTTGTGAGATTTGTGA 58.624 37.500 0.00 0.00 42.55 3.58
1176 1324 5.694231 TGTCCATCTTTGTGAGATTTGTG 57.306 39.130 0.00 0.00 42.55 3.33
1177 1325 6.718454 AGAATGTCCATCTTTGTGAGATTTGT 59.282 34.615 0.00 0.00 42.55 2.83
1178 1326 7.154435 AGAATGTCCATCTTTGTGAGATTTG 57.846 36.000 0.00 0.00 42.55 2.32
1179 1327 8.734386 GTTAGAATGTCCATCTTTGTGAGATTT 58.266 33.333 0.00 0.00 42.55 2.17
1180 1328 8.105829 AGTTAGAATGTCCATCTTTGTGAGATT 58.894 33.333 0.00 0.00 42.55 2.40
1185 1333 7.064371 CAGAGAGTTAGAATGTCCATCTTTGTG 59.936 40.741 0.00 0.00 0.00 3.33
1186 1334 7.102346 CAGAGAGTTAGAATGTCCATCTTTGT 58.898 38.462 0.00 0.00 0.00 2.83
1187 1335 7.064371 CACAGAGAGTTAGAATGTCCATCTTTG 59.936 40.741 0.00 0.00 0.00 2.77
1188 1336 7.038729 TCACAGAGAGTTAGAATGTCCATCTTT 60.039 37.037 0.00 0.00 0.00 2.52
1189 1337 6.438741 TCACAGAGAGTTAGAATGTCCATCTT 59.561 38.462 0.00 0.00 0.00 2.40
1190 1338 5.954752 TCACAGAGAGTTAGAATGTCCATCT 59.045 40.000 0.00 0.00 0.00 2.90
1191 1339 6.214191 TCACAGAGAGTTAGAATGTCCATC 57.786 41.667 0.00 0.00 0.00 3.51
1192 1340 6.611613 TTCACAGAGAGTTAGAATGTCCAT 57.388 37.500 0.00 0.00 0.00 3.41
1193 1341 6.419484 TTTCACAGAGAGTTAGAATGTCCA 57.581 37.500 0.00 0.00 0.00 4.02
1194 1342 7.604164 TGATTTTCACAGAGAGTTAGAATGTCC 59.396 37.037 0.00 0.00 0.00 4.02
1195 1343 8.539770 TGATTTTCACAGAGAGTTAGAATGTC 57.460 34.615 0.00 0.00 0.00 3.06
1200 1348 8.993121 GTGATTTGATTTTCACAGAGAGTTAGA 58.007 33.333 0.00 0.00 41.48 2.10
1201 1349 8.777413 TGTGATTTGATTTTCACAGAGAGTTAG 58.223 33.333 1.84 0.00 45.35 2.34
1203 1351 7.572523 TGTGATTTGATTTTCACAGAGAGTT 57.427 32.000 1.84 0.00 45.35 3.01
1211 1359 4.022068 TGGAGCCTGTGATTTGATTTTCAC 60.022 41.667 0.00 0.00 42.05 3.18
1230 1378 0.250467 CTATTGCCGGTGGGATGGAG 60.250 60.000 1.90 0.00 34.06 3.86
1233 1381 1.898574 GCCTATTGCCGGTGGGATG 60.899 63.158 1.90 0.00 34.06 3.51
1236 1384 2.044451 TTGCCTATTGCCGGTGGG 60.044 61.111 1.90 0.00 40.16 4.61
1242 1390 2.710096 TAGTGAGGTTGCCTATTGCC 57.290 50.000 0.00 0.00 40.16 4.52
1244 1392 3.812053 GAGCATAGTGAGGTTGCCTATTG 59.188 47.826 0.00 0.00 37.07 1.90
1246 1394 3.041211 TGAGCATAGTGAGGTTGCCTAT 58.959 45.455 0.00 0.00 37.07 2.57
1268 1416 9.567848 TTTGATTTGTAAACAGAGAAAGTTCAC 57.432 29.630 0.00 0.00 0.00 3.18
1277 1425 6.583806 GCCTGTGATTTGATTTGTAAACAGAG 59.416 38.462 0.00 0.00 0.00 3.35
1281 1429 5.982516 TGTGCCTGTGATTTGATTTGTAAAC 59.017 36.000 0.00 0.00 0.00 2.01
1303 1451 4.046286 TGCCCAATTCTGAAGGTATTGT 57.954 40.909 0.00 0.00 0.00 2.71
1342 1490 3.697045 TGGTTGTCGGACAAGTCAAAATT 59.303 39.130 22.99 0.00 39.00 1.82
1400 1548 7.337436 AGAGTTGTAGTACTACTAGCTTGGAAG 59.663 40.741 28.56 0.00 34.48 3.46
1402 1550 6.598457 CAGAGTTGTAGTACTACTAGCTTGGA 59.402 42.308 28.56 7.79 34.48 3.53
1414 1562 6.698380 TCTGATTTTCCCAGAGTTGTAGTAC 58.302 40.000 0.00 0.00 35.89 2.73
1427 1575 2.879026 GAGCCGGTTATCTGATTTTCCC 59.121 50.000 1.90 0.00 0.00 3.97
1428 1576 3.541632 TGAGCCGGTTATCTGATTTTCC 58.458 45.455 1.90 0.00 0.00 3.13
1567 3424 5.992217 GTCCTGAAAGTGAGTTGTTAGACAT 59.008 40.000 0.00 0.00 0.00 3.06
1691 3548 4.513406 AGGTGAAGTTGAACCAAACCTA 57.487 40.909 10.58 0.00 39.05 3.08
1734 3591 4.333649 ACACCAAAATGCTGAGATATGTCG 59.666 41.667 0.00 0.00 0.00 4.35
1737 3594 5.571784 ACACACCAAAATGCTGAGATATG 57.428 39.130 0.00 0.00 0.00 1.78
1834 3691 4.417437 GGATCCAGTACTATTAGCAGGGA 58.583 47.826 6.95 0.00 0.00 4.20
1838 3695 3.162666 CCCGGATCCAGTACTATTAGCA 58.837 50.000 13.41 0.00 0.00 3.49
1851 3708 0.257616 TCACATTTTCCCCCGGATCC 59.742 55.000 0.73 0.00 0.00 3.36
1852 3713 2.230660 GATCACATTTTCCCCCGGATC 58.769 52.381 0.73 0.00 0.00 3.36
1856 3717 0.732571 CGTGATCACATTTTCCCCCG 59.267 55.000 24.93 3.73 0.00 5.73
1857 3718 1.102978 CCGTGATCACATTTTCCCCC 58.897 55.000 24.93 0.00 0.00 5.40
1860 3721 2.163613 GGAACCCGTGATCACATTTTCC 59.836 50.000 24.93 24.03 0.00 3.13
1861 3722 2.817258 TGGAACCCGTGATCACATTTTC 59.183 45.455 24.93 20.06 0.00 2.29
1867 3728 1.949465 GGTATGGAACCCGTGATCAC 58.051 55.000 16.21 16.21 43.16 3.06
1906 3767 4.024670 AGTGTTAGCTCTACTAGGTTGGG 58.975 47.826 0.00 0.00 37.13 4.12
1956 3818 6.414732 TGTTAAAGTGGAGATATCTTGTGGG 58.585 40.000 6.70 0.00 0.00 4.61
1970 3832 9.778741 TCAGGCTATATAGATTTGTTAAAGTGG 57.221 33.333 14.16 0.00 0.00 4.00
2054 3916 7.997482 TGCGGATATATCAAGGTATTCTAGAC 58.003 38.462 14.60 0.00 0.00 2.59
2078 3940 7.065085 CAGGTATTGATCCACTCAGTAAGTTTG 59.935 40.741 0.00 0.00 35.45 2.93
2083 3945 5.163405 GCTCAGGTATTGATCCACTCAGTAA 60.163 44.000 0.00 0.00 34.68 2.24
2107 3969 0.034186 TTCATGCAGGCCCCTAGTTG 60.034 55.000 0.00 0.00 0.00 3.16
2131 3993 6.542821 TGTTATTGTTGATCTTCAAGGACCT 58.457 36.000 0.00 0.00 37.00 3.85
2132 3994 6.817765 TGTTATTGTTGATCTTCAAGGACC 57.182 37.500 0.00 0.00 37.00 4.46
2200 4062 4.202020 GCTCACATCAAACATGATCTGCAT 60.202 41.667 0.00 0.00 37.85 3.96
2214 4076 4.650734 TGAGGTTATTGTTGCTCACATCA 58.349 39.130 0.00 0.00 34.43 3.07
2292 4154 5.565592 TGCCACTGAATTGATTATGTGAC 57.434 39.130 8.96 1.39 0.00 3.67
2304 4166 2.029623 GATGGAATGCTGCCACTGAAT 58.970 47.619 0.00 0.00 38.44 2.57
2342 4204 1.070577 CGTCAAGTGTTGAAAGGCTCG 60.071 52.381 0.00 0.00 42.15 5.03
2361 4223 3.313012 TCCAAGTCATTGTAGGACACG 57.687 47.619 0.00 0.00 37.74 4.49
2385 4247 3.357079 CGTGCTGTTGGGACTGGC 61.357 66.667 0.00 0.00 33.95 4.85
2438 4300 5.072600 AGGTTACCACACAGACCTTTATTGA 59.927 40.000 3.51 0.00 39.41 2.57
2463 4325 0.550914 AACAAGGTGGCAGGTCAGAA 59.449 50.000 0.00 0.00 0.00 3.02
2468 4330 2.890945 GTTGAATAACAAGGTGGCAGGT 59.109 45.455 0.00 0.00 39.30 4.00
2492 4354 3.181479 CCGTTTATGGTGAGCAGCTACTA 60.181 47.826 0.00 0.00 0.00 1.82
2528 4393 3.989817 CACAAGAGCAATTGGTAAAAGCC 59.010 43.478 10.70 0.00 34.36 4.35
2535 4400 1.331214 CCACCACAAGAGCAATTGGT 58.669 50.000 10.50 10.50 43.39 3.67
2556 4421 4.386652 CCAATTGCAGCAACAATACTGAAC 59.613 41.667 10.85 0.00 39.32 3.18
2562 4427 3.320256 TGACACCAATTGCAGCAACAATA 59.680 39.130 10.85 0.00 39.32 1.90
2593 4458 8.338072 TGTGGTTTTCTCTTGTTACAACTAAA 57.662 30.769 0.00 0.00 0.00 1.85
2654 4519 9.709495 CTAATCTTCCATCAAAATTCCAAACAA 57.291 29.630 0.00 0.00 0.00 2.83
2822 4693 7.031975 GTGAAATCTTCTTTCATCATCCAACC 58.968 38.462 3.94 0.00 40.12 3.77
2862 4733 3.915536 TCGTTGACGGATGTGTGATAAA 58.084 40.909 3.48 0.00 40.29 1.40
2871 4742 1.464608 ACAATGCTTCGTTGACGGATG 59.535 47.619 3.48 0.00 40.29 3.51
2877 4748 4.930963 ACATTTTGACAATGCTTCGTTGA 58.069 34.783 5.85 0.00 34.77 3.18
2943 4814 3.206964 GAGGCTTCCCTGCTTAATGTAC 58.793 50.000 0.00 0.00 43.12 2.90
2985 4856 5.049818 CCAATCTAATTCCTTTGCTAGCTCG 60.050 44.000 17.23 3.94 0.00 5.03
3022 4893 1.202855 AGCCACATCAGTTGCAAGAGT 60.203 47.619 0.00 0.00 38.77 3.24
3067 4938 5.387113 TGGATTATAGGTGGACTGCATTT 57.613 39.130 0.00 0.00 0.00 2.32
3097 4968 4.844267 AGTAAAATGTTGTTGCTCGTGAC 58.156 39.130 0.00 0.00 0.00 3.67
3250 5122 0.598562 ATGCTCGTGACGTGAGAAGT 59.401 50.000 11.51 0.00 35.43 3.01
3264 5136 6.259550 ACAAATTGTTAGAGGTGAATGCTC 57.740 37.500 0.00 0.00 0.00 4.26
3312 5189 0.034756 TGTGTACGCCAGTTCTGCAT 59.965 50.000 3.51 0.00 0.00 3.96
3361 5238 1.741525 CACAACCACCCCAAAGCTG 59.258 57.895 0.00 0.00 0.00 4.24
3381 5258 0.761802 CTTCCCCATCAGTAGCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
3416 5293 4.363999 CCGCTTGAGAAACTACCATCTAG 58.636 47.826 0.00 0.00 0.00 2.43
3447 5324 2.880890 AGAATATCTTTCACCGGCATGC 59.119 45.455 9.90 9.90 0.00 4.06
3448 5325 3.251729 CCAGAATATCTTTCACCGGCATG 59.748 47.826 0.00 0.00 0.00 4.06
3453 5330 4.137116 TGGTCCAGAATATCTTTCACCG 57.863 45.455 0.00 0.00 0.00 4.94
3483 5360 1.529438 CGTCTGTTGTTGTTGGCGTAT 59.471 47.619 0.00 0.00 0.00 3.06
3484 5361 0.931702 CGTCTGTTGTTGTTGGCGTA 59.068 50.000 0.00 0.00 0.00 4.42
3502 5379 2.289547 GACCAGAGCTAAGCTACTCTCG 59.710 54.545 10.12 7.42 41.31 4.04
3521 5398 4.240096 CAAGAAATTGCCACCTTGATGAC 58.760 43.478 0.00 0.00 38.52 3.06
3530 5407 5.299949 AGATTCCAAACAAGAAATTGCCAC 58.700 37.500 0.00 0.00 0.00 5.01
3535 5412 7.601705 TGGAGAAGATTCCAAACAAGAAATT 57.398 32.000 0.00 0.00 44.09 1.82
3564 5441 2.996734 CCCGCATGGTTGGCCTTT 60.997 61.111 3.32 0.00 35.27 3.11
3627 5504 3.731136 GTGCACTGAAAGGCACGA 58.269 55.556 10.32 0.00 45.94 4.35
3660 5541 5.750067 TCGGATCATATATCAACATGCATCG 59.250 40.000 0.00 0.00 0.00 3.84
3698 5580 2.832643 TCCACTACGATTACCCTGGA 57.167 50.000 0.00 0.00 0.00 3.86
3718 5601 2.188062 AACGGAAACCTAAATCGGCA 57.812 45.000 0.00 0.00 0.00 5.69
3744 5633 1.539065 GGTGGCATATGAGTGACTCGG 60.539 57.143 6.97 0.00 32.35 4.63
3804 5718 7.010552 GTCTGCAAGTACATAGACTTACAATGG 59.989 40.741 0.00 0.00 37.57 3.16
3822 5737 1.071987 TGCCAGGAGTGTCTGCAAG 59.928 57.895 0.00 0.00 33.64 4.01
3826 5741 0.602106 CACTGTGCCAGGAGTGTCTG 60.602 60.000 0.00 0.00 35.78 3.51
3835 5750 1.102809 TGGTGCTTTCACTGTGCCAG 61.103 55.000 2.12 2.43 42.72 4.85
3837 5752 1.360192 GTGGTGCTTTCACTGTGCC 59.640 57.895 2.12 0.00 42.72 5.01
3841 5760 1.648720 CACGGTGGTGCTTTCACTG 59.351 57.895 0.00 10.42 44.59 3.66
3842 5761 4.141144 CACGGTGGTGCTTTCACT 57.859 55.556 0.00 0.00 42.72 3.41
3855 5774 2.671357 GAAAAACCACGGGCACACGG 62.671 60.000 0.00 0.00 38.39 4.94
3901 5820 7.233348 AGGAAAATACCAAGAACACATGACAAT 59.767 33.333 0.00 0.00 0.00 2.71
3907 5831 6.976934 AACAGGAAAATACCAAGAACACAT 57.023 33.333 0.00 0.00 0.00 3.21
3918 5842 4.226761 CAAGCGGACAAACAGGAAAATAC 58.773 43.478 0.00 0.00 0.00 1.89
3924 5848 1.896660 GGCAAGCGGACAAACAGGA 60.897 57.895 0.00 0.00 0.00 3.86
3925 5849 2.644992 GGCAAGCGGACAAACAGG 59.355 61.111 0.00 0.00 0.00 4.00
3934 5858 1.083489 TGTTAGAAATCGGCAAGCGG 58.917 50.000 0.00 0.00 0.00 5.52
3991 5919 3.490761 GCATAGGCACCGCATACATTTTT 60.491 43.478 0.00 0.00 40.72 1.94
4007 5935 7.715265 ACGTCTGAACAAATATAAGCATAGG 57.285 36.000 0.00 0.00 0.00 2.57
4025 5953 1.864711 CACAAGTGGGTGTTACGTCTG 59.135 52.381 0.00 0.00 34.09 3.51
4034 5962 0.178992 ATGGGTGTCACAAGTGGGTG 60.179 55.000 5.12 0.00 40.16 4.61
4041 5969 3.417069 AGAAATCGATGGGTGTCACAA 57.583 42.857 0.00 0.00 0.00 3.33
4088 7754 7.148722 GCAAGACTGACTAGTTTCTGTTCATAC 60.149 40.741 0.00 0.00 37.25 2.39
4090 7756 5.698545 GCAAGACTGACTAGTTTCTGTTCAT 59.301 40.000 0.00 0.00 37.25 2.57
4134 7805 2.594303 CAGCAGTCCCGGCAAACA 60.594 61.111 0.00 0.00 0.00 2.83
4165 7836 1.661112 GAGCTTAACTTACCTGCTGCG 59.339 52.381 0.00 0.00 33.83 5.18
4196 7867 5.506483 CGTATCTTCAATCACACGAGGAGAT 60.506 44.000 0.00 0.00 0.00 2.75
4203 7877 3.551890 CCCTTCGTATCTTCAATCACACG 59.448 47.826 0.00 0.00 0.00 4.49
4209 7883 5.677319 TTCAGTCCCTTCGTATCTTCAAT 57.323 39.130 0.00 0.00 0.00 2.57
4213 7887 9.110502 GAATTAAATTCAGTCCCTTCGTATCTT 57.889 33.333 0.00 0.00 39.09 2.40
4235 7909 4.706962 GGAAGCTGGTATGGACTTTGAATT 59.293 41.667 0.00 0.00 0.00 2.17
4302 7976 5.091261 AGACAAGACTGTTCTCTGTTTGT 57.909 39.130 0.00 0.00 35.30 2.83
4331 8008 7.144661 TGATTTTGTGTATCGTTCATTTGCTT 58.855 30.769 0.00 0.00 0.00 3.91
4333 8010 6.582295 ACTGATTTTGTGTATCGTTCATTTGC 59.418 34.615 0.00 0.00 0.00 3.68
4340 8017 5.642063 CCCTGTACTGATTTTGTGTATCGTT 59.358 40.000 0.60 0.00 0.00 3.85
4342 8019 5.416083 TCCCTGTACTGATTTTGTGTATCG 58.584 41.667 0.60 0.00 0.00 2.92
4345 8022 7.681679 TGTAATCCCTGTACTGATTTTGTGTA 58.318 34.615 0.60 0.00 33.46 2.90
4349 8026 6.432783 TGGTTGTAATCCCTGTACTGATTTTG 59.567 38.462 0.60 0.00 33.46 2.44
4352 8029 5.772393 TGGTTGTAATCCCTGTACTGATT 57.228 39.130 0.60 6.27 35.48 2.57
4353 8030 5.772393 TTGGTTGTAATCCCTGTACTGAT 57.228 39.130 0.60 0.00 0.00 2.90
4354 8031 5.072600 ACTTTGGTTGTAATCCCTGTACTGA 59.927 40.000 0.60 0.00 0.00 3.41
4355 8032 5.181245 CACTTTGGTTGTAATCCCTGTACTG 59.819 44.000 0.00 0.00 0.00 2.74
4365 8042 5.606348 TTCTTTGGCACTTTGGTTGTAAT 57.394 34.783 0.00 0.00 0.00 1.89
4373 8050 2.208326 AGCGTTTCTTTGGCACTTTG 57.792 45.000 0.00 0.00 0.00 2.77
4428 8106 9.901172 CCAACTAGTTTTCCTTACCAGTTATAT 57.099 33.333 5.07 0.00 28.65 0.86
4430 8108 6.657966 GCCAACTAGTTTTCCTTACCAGTTAT 59.342 38.462 5.07 0.00 28.65 1.89
4431 8109 5.999600 GCCAACTAGTTTTCCTTACCAGTTA 59.000 40.000 5.07 0.00 28.65 2.24
4432 8110 4.825634 GCCAACTAGTTTTCCTTACCAGTT 59.174 41.667 5.07 0.00 29.46 3.16
4434 8112 3.756963 GGCCAACTAGTTTTCCTTACCAG 59.243 47.826 5.07 0.00 0.00 4.00
4512 8263 2.022195 CGACGAGGAGGAACTTATGGA 58.978 52.381 0.00 0.00 41.55 3.41
4533 8284 2.483889 GCTACAAGGTCCTAGATGCCAC 60.484 54.545 0.00 0.00 0.00 5.01
4536 8287 3.828875 AAGCTACAAGGTCCTAGATGC 57.171 47.619 0.00 0.00 0.00 3.91
4542 8293 4.717279 TTGGTAAAAGCTACAAGGTCCT 57.283 40.909 0.00 0.00 0.00 3.85
4547 8298 6.981722 AGAAACCATTGGTAAAAGCTACAAG 58.018 36.000 9.20 0.00 33.12 3.16
4557 8308 9.703892 CAATGAAATACAAGAAACCATTGGTAA 57.296 29.630 9.20 0.00 37.07 2.85
4564 8315 6.040278 TGTGAGCAATGAAATACAAGAAACCA 59.960 34.615 0.00 0.00 0.00 3.67
4565 8316 6.446318 TGTGAGCAATGAAATACAAGAAACC 58.554 36.000 0.00 0.00 0.00 3.27
4601 8352 2.548707 GGGCATGCAAGACGAGATGATA 60.549 50.000 21.36 0.00 0.00 2.15
4626 8377 5.543507 ATCGATACCTGCTCTTCAAATCT 57.456 39.130 0.00 0.00 0.00 2.40
4631 8382 4.160439 ACTTGAATCGATACCTGCTCTTCA 59.840 41.667 0.00 0.00 0.00 3.02
4632 8383 4.505922 CACTTGAATCGATACCTGCTCTTC 59.494 45.833 0.00 0.00 0.00 2.87
4635 8386 3.786635 ACACTTGAATCGATACCTGCTC 58.213 45.455 0.00 0.00 0.00 4.26
4645 8396 6.515340 GCTTTTCTTACGTTACACTTGAATCG 59.485 38.462 0.00 0.00 0.00 3.34
4652 8403 6.854496 TGATTGCTTTTCTTACGTTACACT 57.146 33.333 0.00 0.00 0.00 3.55
4653 8404 7.356154 CGTTTGATTGCTTTTCTTACGTTACAC 60.356 37.037 0.00 0.00 0.00 2.90
4660 8411 5.565638 GCTCTCGTTTGATTGCTTTTCTTAC 59.434 40.000 0.00 0.00 0.00 2.34
4661 8412 5.238432 TGCTCTCGTTTGATTGCTTTTCTTA 59.762 36.000 0.00 0.00 0.00 2.10
4664 8415 3.665871 GTGCTCTCGTTTGATTGCTTTTC 59.334 43.478 0.00 0.00 0.00 2.29
4665 8416 3.316308 AGTGCTCTCGTTTGATTGCTTTT 59.684 39.130 0.00 0.00 0.00 2.27
4669 8420 4.083802 AGTTTAGTGCTCTCGTTTGATTGC 60.084 41.667 0.00 0.00 0.00 3.56
4670 8421 5.597813 AGTTTAGTGCTCTCGTTTGATTG 57.402 39.130 0.00 0.00 0.00 2.67
4671 8422 7.907214 ATTAGTTTAGTGCTCTCGTTTGATT 57.093 32.000 0.00 0.00 0.00 2.57
4673 8424 9.731819 CTATATTAGTTTAGTGCTCTCGTTTGA 57.268 33.333 0.00 0.00 0.00 2.69
4674 8425 8.969267 CCTATATTAGTTTAGTGCTCTCGTTTG 58.031 37.037 0.00 0.00 0.00 2.93
4675 8426 7.652507 GCCTATATTAGTTTAGTGCTCTCGTTT 59.347 37.037 0.00 0.00 0.00 3.60
4676 8427 7.014422 AGCCTATATTAGTTTAGTGCTCTCGTT 59.986 37.037 0.00 0.00 0.00 3.85
4677 8428 6.490721 AGCCTATATTAGTTTAGTGCTCTCGT 59.509 38.462 0.00 0.00 0.00 4.18
4678 8429 6.915349 AGCCTATATTAGTTTAGTGCTCTCG 58.085 40.000 0.00 0.00 0.00 4.04
4679 8430 9.016438 AGTAGCCTATATTAGTTTAGTGCTCTC 57.984 37.037 0.00 0.00 0.00 3.20
4680 8431 8.798402 CAGTAGCCTATATTAGTTTAGTGCTCT 58.202 37.037 0.00 0.00 0.00 4.09
4681 8432 7.542824 GCAGTAGCCTATATTAGTTTAGTGCTC 59.457 40.741 11.33 0.00 36.83 4.26
4682 8433 7.379750 GCAGTAGCCTATATTAGTTTAGTGCT 58.620 38.462 11.33 0.00 36.83 4.40
4683 8434 7.583860 GCAGTAGCCTATATTAGTTTAGTGC 57.416 40.000 0.00 0.00 34.74 4.40
4700 8451 1.474077 CATTCCTTTGGTGGCAGTAGC 59.526 52.381 0.00 0.00 41.10 3.58
4701 8452 3.071874 TCATTCCTTTGGTGGCAGTAG 57.928 47.619 0.00 0.00 0.00 2.57
4702 8453 3.737559 ATCATTCCTTTGGTGGCAGTA 57.262 42.857 0.00 0.00 0.00 2.74
4703 8454 2.610438 ATCATTCCTTTGGTGGCAGT 57.390 45.000 0.00 0.00 0.00 4.40
4704 8455 5.404466 TTTAATCATTCCTTTGGTGGCAG 57.596 39.130 0.00 0.00 0.00 4.85
4705 8456 5.732633 CATTTAATCATTCCTTTGGTGGCA 58.267 37.500 0.00 0.00 0.00 4.92
4706 8457 4.571984 GCATTTAATCATTCCTTTGGTGGC 59.428 41.667 0.00 0.00 0.00 5.01
4707 8458 5.981174 AGCATTTAATCATTCCTTTGGTGG 58.019 37.500 0.00 0.00 0.00 4.61
4708 8459 6.044682 GGAGCATTTAATCATTCCTTTGGTG 58.955 40.000 0.00 0.00 0.00 4.17
4709 8460 5.721000 TGGAGCATTTAATCATTCCTTTGGT 59.279 36.000 0.00 0.00 0.00 3.67
4710 8461 6.224665 TGGAGCATTTAATCATTCCTTTGG 57.775 37.500 0.00 0.00 0.00 3.28
4711 8462 6.097270 TCCTGGAGCATTTAATCATTCCTTTG 59.903 38.462 0.00 0.00 0.00 2.77
4712 8463 6.197168 TCCTGGAGCATTTAATCATTCCTTT 58.803 36.000 0.00 0.00 0.00 3.11
4713 8464 5.769835 TCCTGGAGCATTTAATCATTCCTT 58.230 37.500 0.00 0.00 0.00 3.36
4714 8465 5.393068 TCCTGGAGCATTTAATCATTCCT 57.607 39.130 0.00 0.00 0.00 3.36
4715 8466 7.765695 TTATCCTGGAGCATTTAATCATTCC 57.234 36.000 1.52 0.00 0.00 3.01
4716 8467 9.017509 TGATTATCCTGGAGCATTTAATCATTC 57.982 33.333 18.83 3.40 33.46 2.67
4717 8468 8.945195 TGATTATCCTGGAGCATTTAATCATT 57.055 30.769 18.83 0.00 33.46 2.57
4718 8469 8.967918 CATGATTATCCTGGAGCATTTAATCAT 58.032 33.333 23.97 23.97 42.82 2.45
4719 8470 7.395206 CCATGATTATCCTGGAGCATTTAATCA 59.605 37.037 22.40 22.40 39.20 2.57
4720 8471 7.613022 TCCATGATTATCCTGGAGCATTTAATC 59.387 37.037 13.89 15.39 36.47 1.75
4721 8472 7.472741 TCCATGATTATCCTGGAGCATTTAAT 58.527 34.615 13.89 0.80 36.47 1.40
4722 8473 6.851318 TCCATGATTATCCTGGAGCATTTAA 58.149 36.000 13.89 0.00 36.47 1.52
4723 8474 6.452757 TCCATGATTATCCTGGAGCATTTA 57.547 37.500 13.89 0.00 36.47 1.40
4724 8475 5.322754 CTCCATGATTATCCTGGAGCATTT 58.677 41.667 25.73 0.00 46.88 2.32
4725 8476 4.919793 CTCCATGATTATCCTGGAGCATT 58.080 43.478 25.73 0.00 46.88 3.56
4726 8477 4.571369 CTCCATGATTATCCTGGAGCAT 57.429 45.455 25.73 0.67 46.88 3.79
4730 8481 4.306391 TGGTTCTCCATGATTATCCTGGA 58.694 43.478 16.33 16.33 38.58 3.86
4731 8482 4.712051 TGGTTCTCCATGATTATCCTGG 57.288 45.455 9.79 9.79 39.03 4.45
4732 8483 7.720957 TGTTATTGGTTCTCCATGATTATCCTG 59.279 37.037 0.00 0.00 43.91 3.86
4733 8484 7.815383 TGTTATTGGTTCTCCATGATTATCCT 58.185 34.615 0.00 0.00 43.91 3.24
4734 8485 8.641498 ATGTTATTGGTTCTCCATGATTATCC 57.359 34.615 0.00 0.00 43.91 2.59
4736 8487 8.786898 CGAATGTTATTGGTTCTCCATGATTAT 58.213 33.333 0.00 0.00 43.91 1.28
4737 8488 7.255104 GCGAATGTTATTGGTTCTCCATGATTA 60.255 37.037 0.00 0.00 43.91 1.75
4738 8489 6.460123 GCGAATGTTATTGGTTCTCCATGATT 60.460 38.462 0.00 0.00 43.91 2.57
4739 8490 5.009010 GCGAATGTTATTGGTTCTCCATGAT 59.991 40.000 0.00 0.00 43.91 2.45
4740 8491 4.335315 GCGAATGTTATTGGTTCTCCATGA 59.665 41.667 0.00 0.00 43.91 3.07
4741 8492 4.336433 AGCGAATGTTATTGGTTCTCCATG 59.664 41.667 0.00 0.00 43.91 3.66
4742 8493 4.526970 AGCGAATGTTATTGGTTCTCCAT 58.473 39.130 0.00 0.00 43.91 3.41
4743 8494 3.950397 AGCGAATGTTATTGGTTCTCCA 58.050 40.909 0.00 0.00 42.66 3.86
4744 8495 4.965119 AAGCGAATGTTATTGGTTCTCC 57.035 40.909 0.00 0.00 0.00 3.71
4745 8496 6.092807 AGAGAAAGCGAATGTTATTGGTTCTC 59.907 38.462 0.00 0.00 0.00 2.87
4746 8497 5.940470 AGAGAAAGCGAATGTTATTGGTTCT 59.060 36.000 0.00 0.00 0.00 3.01
4747 8498 6.183309 AGAGAAAGCGAATGTTATTGGTTC 57.817 37.500 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.