Multiple sequence alignment - TraesCS1D01G002900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G002900 chr1D 100.000 5612 0 0 1 5612 646425 652036 0.000000e+00 10364.0
1 TraesCS1D01G002900 chr1D 86.134 2589 340 13 2143 4722 620136 617558 0.000000e+00 2774.0
2 TraesCS1D01G002900 chr1D 85.370 1203 174 2 972 2173 494546939 494548140 0.000000e+00 1245.0
3 TraesCS1D01G002900 chr1D 83.548 310 32 8 545 843 391866 392167 7.160000e-69 272.0
4 TraesCS1D01G002900 chr1D 92.143 140 11 0 498 637 646876 647015 1.230000e-46 198.0
5 TraesCS1D01G002900 chr1D 92.143 140 11 0 452 591 646922 647061 1.230000e-46 198.0
6 TraesCS1D01G002900 chr1D 90.000 80 8 0 5189 5268 464270 464349 2.770000e-18 104.0
7 TraesCS1D01G002900 chr1A 88.805 3984 392 37 845 4790 3657536 3653569 0.000000e+00 4837.0
8 TraesCS1D01G002900 chr1A 91.004 2490 215 8 2145 4628 3502860 3500374 0.000000e+00 3349.0
9 TraesCS1D01G002900 chr1A 88.724 807 42 19 4661 5425 3500375 3499576 0.000000e+00 941.0
10 TraesCS1D01G002900 chr1A 86.224 617 37 22 4839 5425 3653107 3652509 4.770000e-175 625.0
11 TraesCS1D01G002900 chr1A 80.864 324 40 14 4875 5193 2979877 2980183 9.400000e-58 235.0
12 TraesCS1D01G002900 chr1A 80.696 316 43 8 4875 5189 2987954 2988252 4.370000e-56 230.0
13 TraesCS1D01G002900 chr1A 88.983 118 13 0 582 699 3016787 3016904 4.530000e-31 147.0
14 TraesCS1D01G002900 chr1A 81.333 150 18 4 5189 5328 3469726 3469577 4.600000e-21 113.0
15 TraesCS1D01G002900 chr1B 87.088 3485 432 14 973 4447 4856407 4852931 0.000000e+00 3927.0
16 TraesCS1D01G002900 chr1B 88.124 3343 311 27 2131 5425 3952144 3955448 0.000000e+00 3895.0
17 TraesCS1D01G002900 chr1B 89.215 2559 266 7 2145 4696 4096584 4099139 0.000000e+00 3188.0
18 TraesCS1D01G002900 chr1B 85.946 2590 339 18 2146 4722 4482663 4480086 0.000000e+00 2743.0
19 TraesCS1D01G002900 chr1B 86.400 2522 319 13 2183 4696 3965603 3968108 0.000000e+00 2736.0
20 TraesCS1D01G002900 chr1B 85.698 2573 354 10 2138 4703 4509837 4507272 0.000000e+00 2700.0
21 TraesCS1D01G002900 chr1B 82.804 1669 242 28 591 2241 4511231 4509590 0.000000e+00 1450.0
22 TraesCS1D01G002900 chr1B 84.008 1457 191 27 732 2157 4150490 4151935 0.000000e+00 1362.0
23 TraesCS1D01G002900 chr1B 86.196 1217 164 4 1027 2241 4483638 4482424 0.000000e+00 1314.0
24 TraesCS1D01G002900 chr1B 85.050 1204 176 4 972 2173 687785478 687786679 0.000000e+00 1223.0
25 TraesCS1D01G002900 chr1B 85.891 1134 154 6 1027 2157 3951184 3952314 0.000000e+00 1203.0
26 TraesCS1D01G002900 chr1B 87.563 394 45 3 1 390 4511901 4511508 2.380000e-123 453.0
27 TraesCS1D01G002900 chr1B 84.300 293 38 5 100 389 4535936 4535649 4.280000e-71 279.0
28 TraesCS1D01G002900 chr1B 85.824 261 27 5 582 837 4911482 4911227 9.270000e-68 268.0
29 TraesCS1D01G002900 chr1B 81.073 317 40 12 4875 5187 3947651 3947951 9.400000e-58 235.0
30 TraesCS1D01G002900 chr1B 80.805 323 42 11 4875 5193 4477834 4477528 9.400000e-58 235.0
31 TraesCS1D01G002900 chr1B 83.142 261 31 7 582 837 4148532 4148784 5.660000e-55 226.0
32 TraesCS1D01G002900 chr1B 78.209 335 46 18 4875 5186 4189214 4189544 7.420000e-44 189.0
33 TraesCS1D01G002900 chr1B 89.062 128 13 1 582 709 4538332 4538206 2.090000e-34 158.0
34 TraesCS1D01G002900 chr1B 88.281 128 14 1 582 709 4950980 4950854 9.740000e-33 152.0
35 TraesCS1D01G002900 chr1B 81.868 182 24 6 67 247 4832744 4832917 1.630000e-30 145.0
36 TraesCS1D01G002900 chr1B 88.696 115 5 2 5438 5545 3955500 3955613 3.530000e-27 134.0
37 TraesCS1D01G002900 chr1B 86.916 107 11 2 2 107 4830203 4830307 3.550000e-22 117.0
38 TraesCS1D01G002900 chr1B 100.000 32 0 0 845 876 3940872 3940903 6.070000e-05 60.2
39 TraesCS1D01G002900 chr1B 94.737 38 2 0 845 882 4537248 4537211 6.070000e-05 60.2
40 TraesCS1D01G002900 chr1B 100.000 29 0 0 845 873 4512969 4512941 3.000000e-03 54.7
41 TraesCS1D01G002900 chr3D 84.915 1233 168 16 1018 2241 560058089 560056866 0.000000e+00 1230.0
42 TraesCS1D01G002900 chr3D 78.635 337 48 15 4875 5188 560052981 560052646 9.530000e-48 202.0
43 TraesCS1D01G002900 chrUn 83.696 276 24 12 582 850 318172277 318172538 2.020000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G002900 chr1D 646425 652036 5611 False 10364.000000 10364 100.000000 1 5612 1 chr1D.!!$F3 5611
1 TraesCS1D01G002900 chr1D 617558 620136 2578 True 2774.000000 2774 86.134000 2143 4722 1 chr1D.!!$R1 2579
2 TraesCS1D01G002900 chr1D 494546939 494548140 1201 False 1245.000000 1245 85.370000 972 2173 1 chr1D.!!$F4 1201
3 TraesCS1D01G002900 chr1A 3652509 3657536 5027 True 2731.000000 4837 87.514500 845 5425 2 chr1A.!!$R3 4580
4 TraesCS1D01G002900 chr1A 3499576 3502860 3284 True 2145.000000 3349 89.864000 2145 5425 2 chr1A.!!$R2 3280
5 TraesCS1D01G002900 chr1B 4852931 4856407 3476 True 3927.000000 3927 87.088000 973 4447 1 chr1B.!!$R1 3474
6 TraesCS1D01G002900 chr1B 4096584 4099139 2555 False 3188.000000 3188 89.215000 2145 4696 1 chr1B.!!$F3 2551
7 TraesCS1D01G002900 chr1B 3965603 3968108 2505 False 2736.000000 2736 86.400000 2183 4696 1 chr1B.!!$F2 2513
8 TraesCS1D01G002900 chr1B 4477528 4483638 6110 True 1430.666667 2743 84.315667 1027 5193 3 chr1B.!!$R4 4166
9 TraesCS1D01G002900 chr1B 3947651 3955613 7962 False 1366.750000 3895 85.946000 1027 5545 4 chr1B.!!$F6 4518
10 TraesCS1D01G002900 chr1B 687785478 687786679 1201 False 1223.000000 1223 85.050000 972 2173 1 chr1B.!!$F5 1201
11 TraesCS1D01G002900 chr1B 4507272 4512969 5697 True 1164.425000 2700 89.016250 1 4703 4 chr1B.!!$R5 4702
12 TraesCS1D01G002900 chr1B 4148532 4151935 3403 False 794.000000 1362 83.575000 582 2157 2 chr1B.!!$F7 1575
13 TraesCS1D01G002900 chr3D 560052646 560058089 5443 True 716.000000 1230 81.775000 1018 5188 2 chr3D.!!$R1 4170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 3760 0.030101 GAGAGGAAGAGATGGCGACG 59.970 60.000 0.00 0.0 0.00 5.12 F
1025 4022 0.187117 TCTTCCCCAACACCATTGCA 59.813 50.000 0.00 0.0 0.00 4.08 F
1140 4140 0.322906 CCCTTCTCCACTGGAAAGCC 60.323 60.000 0.00 0.0 0.00 4.35 F
1161 4161 0.451783 CAATAGCAAGCCCACCGTTC 59.548 55.000 0.00 0.0 0.00 3.95 F
3038 6183 1.001406 GAGCGGATCAATACCTGAGGG 59.999 57.143 2.38 0.0 37.52 4.30 F
3434 6579 0.250684 TCAACTCCAATTGCAGCCGA 60.251 50.000 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 5069 2.360165 GAGCCAGATATTTGGTTGCTGG 59.640 50.000 13.5 7.02 46.82 4.85 R
3021 6166 2.036475 CAGTCCCTCAGGTATTGATCCG 59.964 54.545 0.0 0.00 34.68 4.18 R
3092 6237 0.540365 CACACCAGGCAAACTCCCAT 60.540 55.000 0.0 0.00 0.00 4.00 R
3140 6285 8.671921 CAAGATTATTGTTGCTCACATCTAACT 58.328 33.333 0.0 0.00 34.43 2.24 R
4495 7651 0.478072 TGCCTCATGGTTGGTCTTGT 59.522 50.000 0.0 0.00 35.27 3.16 R
4719 7896 1.623311 TCATCAACTCATCCCGTGTGT 59.377 47.619 0.0 0.00 36.16 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 1092 2.429478 TCAGCTTGTGTGGTCATGATG 58.571 47.619 0.00 0.00 32.69 3.07
30 1099 0.741927 TGTGGTCATGATGCTGCTCG 60.742 55.000 0.00 0.00 0.00 5.03
38 1107 0.320050 TGATGCTGCTCGGTTGTACA 59.680 50.000 0.00 0.00 0.00 2.90
62 1131 6.017770 CAGGCATTGAATTCAACACAAATTGT 60.018 34.615 22.71 1.19 41.74 2.71
66 1135 7.512297 CATTGAATTCAACACAAATTGTAGCC 58.488 34.615 22.71 0.00 37.51 3.93
69 1138 5.789643 ATTCAACACAAATTGTAGCCACT 57.210 34.783 0.00 0.00 37.51 4.00
95 1164 3.199946 TCATATTCCCTTGGACACAGGAC 59.800 47.826 0.00 0.00 0.00 3.85
96 1165 1.747444 ATTCCCTTGGACACAGGACT 58.253 50.000 0.00 0.00 0.00 3.85
98 1167 1.056660 TCCCTTGGACACAGGACTTC 58.943 55.000 0.00 0.00 0.00 3.01
129 1198 2.218673 TGGGGCCCAGGATTTGTATAA 58.781 47.619 24.76 0.00 0.00 0.98
146 1215 8.864069 TTTGTATAAACCACAATTCAACACTG 57.136 30.769 0.00 0.00 35.89 3.66
155 1224 6.153680 ACCACAATTCAACACTGAAACCTTTA 59.846 34.615 0.00 0.00 44.64 1.85
177 1247 0.035036 TTCACAACCGCCGGTGAATA 59.965 50.000 18.79 0.00 46.01 1.75
186 1256 1.597663 CGCCGGTGAATAGATTTCCAC 59.402 52.381 10.20 0.00 0.00 4.02
187 1257 1.597663 GCCGGTGAATAGATTTCCACG 59.402 52.381 1.90 0.00 0.00 4.94
189 1259 3.738899 GCCGGTGAATAGATTTCCACGTA 60.739 47.826 1.90 0.00 0.00 3.57
191 1261 4.871557 CCGGTGAATAGATTTCCACGTAAA 59.128 41.667 0.00 0.00 0.00 2.01
192 1262 5.526111 CCGGTGAATAGATTTCCACGTAAAT 59.474 40.000 0.00 0.00 0.00 1.40
193 1263 6.037830 CCGGTGAATAGATTTCCACGTAAATT 59.962 38.462 0.00 0.00 0.00 1.82
202 1275 5.376947 TTTCCACGTAAATTTTTGTTGCG 57.623 34.783 0.00 0.00 39.57 4.85
219 1292 1.663388 CGTTGCGCCACTAGTCACA 60.663 57.895 10.16 0.00 0.00 3.58
226 1299 1.000955 CGCCACTAGTCACAAGTCCTT 59.999 52.381 0.00 0.00 0.00 3.36
237 1310 6.402222 AGTCACAAGTCCTTGAGCTAAATAG 58.598 40.000 13.69 0.00 42.93 1.73
247 1320 7.918562 GTCCTTGAGCTAAATAGTCTGTTCTAG 59.081 40.741 0.00 0.00 0.00 2.43
277 1350 1.810151 GCAATCAACACGTACATGGGT 59.190 47.619 0.00 0.00 0.00 4.51
278 1351 2.159572 GCAATCAACACGTACATGGGTC 60.160 50.000 0.00 0.00 0.00 4.46
279 1352 2.396590 ATCAACACGTACATGGGTCC 57.603 50.000 0.00 0.00 0.00 4.46
282 1355 2.883730 CACGTACATGGGTCCGCG 60.884 66.667 0.00 0.00 28.18 6.46
328 1401 4.219288 CCCACTTGAGCTAAGATTTTTGCT 59.781 41.667 4.65 4.65 45.82 3.91
341 1414 1.925229 TTTTGCTTCAGCTTGTGTGC 58.075 45.000 0.00 0.00 42.66 4.57
354 1427 1.376942 GTGTGCTGGAGATGCTGCT 60.377 57.895 0.00 0.00 0.00 4.24
357 1430 0.675837 GTGCTGGAGATGCTGCTTGA 60.676 55.000 0.00 0.00 0.00 3.02
366 1439 3.276857 AGATGCTGCTTGATTGTACAGG 58.723 45.455 0.00 0.00 0.00 4.00
368 1441 1.271543 TGCTGCTTGATTGTACAGGCT 60.272 47.619 0.00 0.00 42.10 4.58
373 1446 4.081406 TGCTTGATTGTACAGGCTTTGAT 58.919 39.130 0.00 0.00 42.10 2.57
382 1455 5.565509 TGTACAGGCTTTGATATTCCACAA 58.434 37.500 0.00 0.00 0.00 3.33
390 1463 6.030228 GCTTTGATATTCCACAAGTTACAGC 58.970 40.000 0.00 0.00 0.00 4.40
391 1464 5.794687 TTGATATTCCACAAGTTACAGCG 57.205 39.130 0.00 0.00 0.00 5.18
393 1466 5.483811 TGATATTCCACAAGTTACAGCGAA 58.516 37.500 0.00 0.00 0.00 4.70
394 1467 5.935206 TGATATTCCACAAGTTACAGCGAAA 59.065 36.000 0.00 0.00 0.00 3.46
396 1469 4.966965 TTCCACAAGTTACAGCGAAAAA 57.033 36.364 0.00 0.00 0.00 1.94
398 1471 3.314080 TCCACAAGTTACAGCGAAAAAGG 59.686 43.478 0.00 0.00 0.00 3.11
399 1472 3.550030 CCACAAGTTACAGCGAAAAAGGG 60.550 47.826 0.00 0.00 0.00 3.95
402 1475 4.201980 ACAAGTTACAGCGAAAAAGGGAAC 60.202 41.667 0.00 0.00 0.00 3.62
403 1476 3.547746 AGTTACAGCGAAAAAGGGAACA 58.452 40.909 0.00 0.00 0.00 3.18
405 1478 4.583073 AGTTACAGCGAAAAAGGGAACATT 59.417 37.500 0.00 0.00 0.00 2.71
408 1481 5.523438 ACAGCGAAAAAGGGAACATTTTA 57.477 34.783 0.00 0.00 30.93 1.52
411 1484 6.183360 ACAGCGAAAAAGGGAACATTTTAGAA 60.183 34.615 0.00 0.00 30.93 2.10
412 1485 6.699642 CAGCGAAAAAGGGAACATTTTAGAAA 59.300 34.615 0.00 0.00 30.93 2.52
413 1486 7.223777 CAGCGAAAAAGGGAACATTTTAGAAAA 59.776 33.333 0.00 0.00 30.93 2.29
418 1491 9.502091 AAAAAGGGAACATTTTAGAAAATAGGC 57.498 29.630 0.05 0.00 36.52 3.93
419 1492 8.435931 AAAGGGAACATTTTAGAAAATAGGCT 57.564 30.769 0.05 0.00 36.52 4.58
420 1493 9.541884 AAAGGGAACATTTTAGAAAATAGGCTA 57.458 29.630 0.00 0.00 36.52 3.93
433 1506 8.554835 AGAAAATAGGCTACTTCAGTTTCTTC 57.445 34.615 16.42 2.04 31.75 2.87
434 1507 8.157476 AGAAAATAGGCTACTTCAGTTTCTTCA 58.843 33.333 16.42 0.00 31.75 3.02
435 1508 8.870075 AAAATAGGCTACTTCAGTTTCTTCAT 57.130 30.769 0.00 0.00 0.00 2.57
436 1509 9.959721 AAAATAGGCTACTTCAGTTTCTTCATA 57.040 29.630 0.00 0.00 0.00 2.15
441 1514 7.337942 AGGCTACTTCAGTTTCTTCATAATTGG 59.662 37.037 0.00 0.00 0.00 3.16
442 1515 7.336931 GGCTACTTCAGTTTCTTCATAATTGGA 59.663 37.037 0.00 0.00 0.00 3.53
443 1516 8.394121 GCTACTTCAGTTTCTTCATAATTGGAG 58.606 37.037 0.00 0.00 0.00 3.86
444 1517 7.150783 ACTTCAGTTTCTTCATAATTGGAGC 57.849 36.000 0.00 0.00 0.00 4.70
446 1519 6.748333 TCAGTTTCTTCATAATTGGAGCAG 57.252 37.500 0.00 0.00 0.00 4.24
449 1522 6.149973 CAGTTTCTTCATAATTGGAGCAGTGA 59.850 38.462 0.00 0.00 0.00 3.41
450 1523 6.150140 AGTTTCTTCATAATTGGAGCAGTGAC 59.850 38.462 0.00 0.00 0.00 3.67
451 1524 4.517285 TCTTCATAATTGGAGCAGTGACC 58.483 43.478 0.00 0.00 0.00 4.02
452 1525 3.998913 TCATAATTGGAGCAGTGACCA 57.001 42.857 0.00 0.00 0.00 4.02
454 1527 4.661222 TCATAATTGGAGCAGTGACCAAA 58.339 39.130 20.43 9.98 46.87 3.28
455 1528 4.701651 TCATAATTGGAGCAGTGACCAAAG 59.298 41.667 20.43 13.24 46.87 2.77
457 1530 2.727123 TTGGAGCAGTGACCAAAGAA 57.273 45.000 16.26 0.00 42.18 2.52
458 1531 2.727123 TGGAGCAGTGACCAAAGAAA 57.273 45.000 6.96 0.00 32.93 2.52
459 1532 3.228188 TGGAGCAGTGACCAAAGAAAT 57.772 42.857 6.96 0.00 32.93 2.17
460 1533 4.365514 TGGAGCAGTGACCAAAGAAATA 57.634 40.909 6.96 0.00 32.93 1.40
461 1534 4.072131 TGGAGCAGTGACCAAAGAAATAC 58.928 43.478 6.96 0.00 32.93 1.89
462 1535 3.440522 GGAGCAGTGACCAAAGAAATACC 59.559 47.826 0.00 0.00 0.00 2.73
463 1536 4.072131 GAGCAGTGACCAAAGAAATACCA 58.928 43.478 0.00 0.00 0.00 3.25
464 1537 4.666512 AGCAGTGACCAAAGAAATACCAT 58.333 39.130 0.00 0.00 0.00 3.55
466 1539 4.458989 GCAGTGACCAAAGAAATACCATCA 59.541 41.667 0.00 0.00 0.00 3.07
467 1540 5.048083 GCAGTGACCAAAGAAATACCATCAA 60.048 40.000 0.00 0.00 0.00 2.57
468 1541 6.516527 GCAGTGACCAAAGAAATACCATCAAA 60.517 38.462 0.00 0.00 0.00 2.69
469 1542 6.863126 CAGTGACCAAAGAAATACCATCAAAC 59.137 38.462 0.00 0.00 0.00 2.93
470 1543 6.549364 AGTGACCAAAGAAATACCATCAAACA 59.451 34.615 0.00 0.00 0.00 2.83
471 1544 7.069331 AGTGACCAAAGAAATACCATCAAACAA 59.931 33.333 0.00 0.00 0.00 2.83
472 1545 7.382218 GTGACCAAAGAAATACCATCAAACAAG 59.618 37.037 0.00 0.00 0.00 3.16
474 1547 7.433680 ACCAAAGAAATACCATCAAACAAGTC 58.566 34.615 0.00 0.00 0.00 3.01
475 1548 7.069331 ACCAAAGAAATACCATCAAACAAGTCA 59.931 33.333 0.00 0.00 0.00 3.41
476 1549 7.382218 CCAAAGAAATACCATCAAACAAGTCAC 59.618 37.037 0.00 0.00 0.00 3.67
477 1550 7.581213 AAGAAATACCATCAAACAAGTCACA 57.419 32.000 0.00 0.00 0.00 3.58
478 1551 7.206981 AGAAATACCATCAAACAAGTCACAG 57.793 36.000 0.00 0.00 0.00 3.66
480 1553 7.502226 AGAAATACCATCAAACAAGTCACAGAA 59.498 33.333 0.00 0.00 0.00 3.02
481 1554 6.808008 ATACCATCAAACAAGTCACAGAAG 57.192 37.500 0.00 0.00 0.00 2.85
482 1555 4.780815 ACCATCAAACAAGTCACAGAAGA 58.219 39.130 0.00 0.00 0.00 2.87
483 1556 5.380043 ACCATCAAACAAGTCACAGAAGAT 58.620 37.500 0.00 0.00 0.00 2.40
484 1557 6.533730 ACCATCAAACAAGTCACAGAAGATA 58.466 36.000 0.00 0.00 0.00 1.98
485 1558 6.428159 ACCATCAAACAAGTCACAGAAGATAC 59.572 38.462 0.00 0.00 0.00 2.24
486 1559 6.652481 CCATCAAACAAGTCACAGAAGATACT 59.348 38.462 0.00 0.00 0.00 2.12
487 1560 7.360691 CCATCAAACAAGTCACAGAAGATACTG 60.361 40.741 0.00 0.00 42.78 2.74
533 1606 5.875224 TCAAACAAATCACAGGAGATACCA 58.125 37.500 0.00 0.00 42.04 3.25
534 1607 5.939883 TCAAACAAATCACAGGAGATACCAG 59.060 40.000 0.00 0.00 42.04 4.00
536 1609 3.264193 ACAAATCACAGGAGATACCAGCA 59.736 43.478 0.00 0.00 42.04 4.41
538 1611 4.574674 AATCACAGGAGATACCAGCAAA 57.425 40.909 0.00 0.00 42.04 3.68
540 1613 5.894298 ATCACAGGAGATACCAGCAAATA 57.106 39.130 0.00 0.00 42.04 1.40
541 1614 5.692115 TCACAGGAGATACCAGCAAATAA 57.308 39.130 0.00 0.00 42.04 1.40
543 1616 6.480763 TCACAGGAGATACCAGCAAATAAAA 58.519 36.000 0.00 0.00 42.04 1.52
573 1646 9.565213 GAAATTCTATCAAACAAATCACAGGAG 57.435 33.333 0.00 0.00 0.00 3.69
574 1647 8.868522 AATTCTATCAAACAAATCACAGGAGA 57.131 30.769 0.00 0.00 0.00 3.71
575 1648 9.471702 AATTCTATCAAACAAATCACAGGAGAT 57.528 29.630 0.00 0.00 0.00 2.75
577 1650 8.948631 TCTATCAAACAAATCACAGGAGATAC 57.051 34.615 0.00 0.00 0.00 2.24
578 1651 7.987458 TCTATCAAACAAATCACAGGAGATACC 59.013 37.037 0.00 0.00 39.35 2.73
579 1652 5.875224 TCAAACAAATCACAGGAGATACCA 58.125 37.500 0.00 0.00 42.04 3.25
580 1653 5.939883 TCAAACAAATCACAGGAGATACCAG 59.060 40.000 0.00 0.00 42.04 4.00
589 1662 6.480763 TCACAGGAGATACCAGCAAATAAAA 58.519 36.000 0.00 0.00 42.04 1.52
624 3577 7.987458 TCTATCAAACAAATCACAGGAGATACC 59.013 37.037 0.00 0.00 39.35 2.73
669 3622 6.294176 GCAATGTTAACTCAAGTCCATTCAGT 60.294 38.462 7.22 0.00 0.00 3.41
672 3625 2.936919 ACTCAAGTCCATTCAGTGCA 57.063 45.000 0.00 0.00 0.00 4.57
673 3626 3.430042 ACTCAAGTCCATTCAGTGCAT 57.570 42.857 0.00 0.00 0.00 3.96
674 3627 4.558226 ACTCAAGTCCATTCAGTGCATA 57.442 40.909 0.00 0.00 0.00 3.14
679 3632 5.181811 TCAAGTCCATTCAGTGCATAAGTTG 59.818 40.000 0.00 0.00 0.00 3.16
681 3634 4.697352 AGTCCATTCAGTGCATAAGTTGTC 59.303 41.667 0.00 0.00 0.00 3.18
682 3635 3.684305 TCCATTCAGTGCATAAGTTGTCG 59.316 43.478 0.00 0.00 0.00 4.35
685 3638 2.324860 TCAGTGCATAAGTTGTCGACG 58.675 47.619 11.62 0.00 0.00 5.12
686 3639 1.390123 CAGTGCATAAGTTGTCGACGG 59.610 52.381 11.62 0.00 0.00 4.79
698 3651 0.179108 GTCGACGGAGGAGAATTGGG 60.179 60.000 0.00 0.00 0.00 4.12
709 3662 6.521427 CGGAGGAGAATTGGGAAAGATATGAT 60.521 42.308 0.00 0.00 0.00 2.45
710 3663 6.658391 GGAGGAGAATTGGGAAAGATATGATG 59.342 42.308 0.00 0.00 0.00 3.07
711 3664 7.398289 AGGAGAATTGGGAAAGATATGATGA 57.602 36.000 0.00 0.00 0.00 2.92
718 3671 4.021104 TGGGAAAGATATGATGAGTAGGCG 60.021 45.833 0.00 0.00 0.00 5.52
721 3674 6.094061 GGAAAGATATGATGAGTAGGCGTAC 58.906 44.000 8.53 8.53 0.00 3.67
765 3723 3.507162 TCCTGTGTCATTTGTCCACAT 57.493 42.857 0.00 0.00 38.34 3.21
782 3740 6.016024 TGTCCACATGAATGAGGAAAGAAAAG 60.016 38.462 10.54 0.00 46.56 2.27
783 3741 5.477984 TCCACATGAATGAGGAAAGAAAAGG 59.522 40.000 6.96 0.00 43.13 3.11
802 3760 0.030101 GAGAGGAAGAGATGGCGACG 59.970 60.000 0.00 0.00 0.00 5.12
805 3763 0.752009 AGGAAGAGATGGCGACGCTA 60.752 55.000 20.77 15.20 0.00 4.26
827 3786 1.533994 AAGGAAAACAGGCAGCCCC 60.534 57.895 8.22 0.00 0.00 5.80
829 3788 2.597510 GAAAACAGGCAGCCCCGT 60.598 61.111 8.22 2.40 39.21 5.28
846 3805 1.364626 CGTAGCAGCTGCCAAAGGAG 61.365 60.000 34.39 15.20 43.38 3.69
848 3807 0.914644 TAGCAGCTGCCAAAGGAGAT 59.085 50.000 34.39 15.49 43.38 2.75
877 3843 5.104610 ACACTGAAGAATAGTCATCCAGCAT 60.105 40.000 0.00 0.00 0.00 3.79
894 3860 1.669779 GCATCAGCATCCACTCAACTC 59.330 52.381 0.00 0.00 41.58 3.01
909 3875 2.094442 TCAACTCGTGTGTGTTCACTGA 60.094 45.455 4.59 0.00 44.14 3.41
914 3880 2.102420 TCGTGTGTGTTCACTGAAGGAT 59.898 45.455 4.59 0.00 44.14 3.24
948 3939 9.425893 CACTATTTAAATATCAGTTGAGTTGCG 57.574 33.333 8.34 0.00 0.00 4.85
949 3940 8.122952 ACTATTTAAATATCAGTTGAGTTGCGC 58.877 33.333 8.34 0.00 0.00 6.09
956 3947 1.800586 CAGTTGAGTTGCGCTGTGTAT 59.199 47.619 9.73 0.00 0.00 2.29
965 3956 1.737236 TGCGCTGTGTATTGAATCACC 59.263 47.619 9.73 0.00 34.14 4.02
969 3960 2.609459 GCTGTGTATTGAATCACCTCCG 59.391 50.000 5.67 0.00 34.14 4.63
977 3974 1.271325 TGAATCACCTCCGCAACACAT 60.271 47.619 0.00 0.00 0.00 3.21
988 3985 1.717113 CGCAACACATCATGCAAACAG 59.283 47.619 0.00 0.00 42.68 3.16
1012 4009 1.741394 GCAGCAAAATGCCATCTTCCC 60.741 52.381 0.00 0.00 46.52 3.97
1024 4021 1.205417 CATCTTCCCCAACACCATTGC 59.795 52.381 0.00 0.00 0.00 3.56
1025 4022 0.187117 TCTTCCCCAACACCATTGCA 59.813 50.000 0.00 0.00 0.00 4.08
1033 4033 2.503331 CAACACCATTGCAGTACCTCA 58.497 47.619 0.00 0.00 0.00 3.86
1039 4039 2.092968 CCATTGCAGTACCTCAGCCTAA 60.093 50.000 0.00 0.00 0.00 2.69
1060 4060 1.202989 TGTTGGTGCCATGCCTTCTTA 60.203 47.619 0.00 0.00 0.00 2.10
1102 4102 2.039418 CGTACCATGGAGGGATCTCAA 58.961 52.381 21.47 0.00 43.89 3.02
1114 4114 2.233922 GGGATCTCAACGAGGTCTCAAA 59.766 50.000 4.37 0.00 39.87 2.69
1125 4125 0.613012 GGTCTCAAAGCATGGCCCTT 60.613 55.000 0.00 0.00 0.00 3.95
1140 4140 0.322906 CCCTTCTCCACTGGAAAGCC 60.323 60.000 0.00 0.00 0.00 4.35
1146 4146 2.642311 TCTCCACTGGAAAGCCACAATA 59.358 45.455 0.00 0.00 39.92 1.90
1161 4161 0.451783 CAATAGCAAGCCCACCGTTC 59.548 55.000 0.00 0.00 0.00 3.95
1183 4183 3.269178 CAGATGAGCTCTTGGAAGGAAC 58.731 50.000 16.19 0.00 29.16 3.62
1188 4188 1.490490 AGCTCTTGGAAGGAACACACA 59.510 47.619 0.00 0.00 0.00 3.72
1233 4233 2.899838 TGCACGGCTGTTCACCAC 60.900 61.111 0.00 0.00 0.00 4.16
1281 4281 1.895707 CATCTCCTTGCCGGATGCC 60.896 63.158 5.05 0.00 42.12 4.40
1320 4320 1.016653 GTGAGCTCAACTTCTCGGCC 61.017 60.000 20.19 0.00 32.20 6.13
1347 4347 8.504811 TTCCATTCCTCACATATATTGACCTA 57.495 34.615 0.00 0.00 0.00 3.08
1365 4365 5.211174 ACCTAAGTAACAACAGTCTCCAC 57.789 43.478 0.00 0.00 0.00 4.02
1395 4395 1.614413 CCCGTTAGTATCAGCTCCCTC 59.386 57.143 0.00 0.00 0.00 4.30
1415 4415 3.650139 TCTCAGCACTTTCGGTTCTTAC 58.350 45.455 0.00 0.00 0.00 2.34
1417 4417 2.367567 TCAGCACTTTCGGTTCTTACCT 59.632 45.455 0.00 0.00 42.66 3.08
1421 4421 3.363673 GCACTTTCGGTTCTTACCTTTCG 60.364 47.826 0.00 0.00 42.66 3.46
1423 4423 1.421382 TTCGGTTCTTACCTTTCGCG 58.579 50.000 0.00 0.00 42.66 5.87
1487 4487 1.336125 GCAAAGTCTCAAGCTGCTTGT 59.664 47.619 33.94 17.72 41.66 3.16
1491 4491 2.492012 AGTCTCAAGCTGCTTGTTCTG 58.508 47.619 33.94 23.55 41.66 3.02
1514 4514 4.386049 GTCATTTAACAGACTCACAGGACG 59.614 45.833 0.40 0.00 0.00 4.79
1629 4629 5.140454 AGGCTTGTCAACCTACAAATTCTT 58.860 37.500 5.26 0.00 38.81 2.52
1694 4694 4.530875 CTTGGAAATCTGACCCAGCTAAT 58.469 43.478 0.00 0.00 0.00 1.73
1697 4697 3.633986 GGAAATCTGACCCAGCTAATTGG 59.366 47.826 0.00 0.00 38.00 3.16
1705 4705 4.076394 GACCCAGCTAATTGGTTTGTACA 58.924 43.478 0.00 0.00 36.45 2.90
1749 4749 3.584294 GCCTATACCCCAAGAACTAGGA 58.416 50.000 0.00 0.00 0.00 2.94
1780 4780 7.597386 AGTCCATTTACAAATTCTTCAGCTTC 58.403 34.615 0.00 0.00 0.00 3.86
1782 4782 7.327032 GTCCATTTACAAATTCTTCAGCTTCAC 59.673 37.037 0.00 0.00 0.00 3.18
1792 4792 8.571461 AATTCTTCAGCTTCACTCAAATGATA 57.429 30.769 0.00 0.00 0.00 2.15
1901 4901 1.065854 CCCAGAACTAGGCAACCTCAG 60.066 57.143 0.00 0.00 34.61 3.35
1909 4909 2.990066 AGGCAACCTCAGTATGCTAC 57.010 50.000 0.00 0.00 39.94 3.58
1911 4911 2.571653 AGGCAACCTCAGTATGCTACAA 59.428 45.455 0.00 0.00 39.94 2.41
2031 5031 3.199946 TCACAGGCCCAATACCTTTAGAG 59.800 47.826 0.00 0.00 34.42 2.43
2032 5032 3.054361 CACAGGCCCAATACCTTTAGAGT 60.054 47.826 0.00 0.00 34.42 3.24
2033 5033 3.591977 ACAGGCCCAATACCTTTAGAGTT 59.408 43.478 0.00 0.00 34.42 3.01
2034 5034 3.947834 CAGGCCCAATACCTTTAGAGTTG 59.052 47.826 0.00 0.00 34.42 3.16
2035 5035 3.850173 AGGCCCAATACCTTTAGAGTTGA 59.150 43.478 0.00 0.00 31.87 3.18
2036 5036 4.080299 AGGCCCAATACCTTTAGAGTTGAG 60.080 45.833 0.00 0.00 31.87 3.02
2037 5037 3.628032 GCCCAATACCTTTAGAGTTGAGC 59.372 47.826 0.00 0.00 0.00 4.26
2038 5038 4.843728 CCCAATACCTTTAGAGTTGAGCA 58.156 43.478 0.00 0.00 0.00 4.26
2039 5039 5.440610 CCCAATACCTTTAGAGTTGAGCAT 58.559 41.667 0.00 0.00 0.00 3.79
2040 5040 5.529060 CCCAATACCTTTAGAGTTGAGCATC 59.471 44.000 0.00 0.00 0.00 3.91
2041 5041 6.352516 CCAATACCTTTAGAGTTGAGCATCT 58.647 40.000 0.00 0.00 34.92 2.90
2042 5042 6.825721 CCAATACCTTTAGAGTTGAGCATCTT 59.174 38.462 0.00 0.00 34.92 2.40
2043 5043 7.201679 CCAATACCTTTAGAGTTGAGCATCTTG 60.202 40.741 0.00 0.00 34.92 3.02
2044 5044 5.489792 ACCTTTAGAGTTGAGCATCTTGA 57.510 39.130 0.00 0.00 34.92 3.02
2045 5045 6.059787 ACCTTTAGAGTTGAGCATCTTGAT 57.940 37.500 0.00 0.00 34.92 2.57
2046 5046 5.879223 ACCTTTAGAGTTGAGCATCTTGATG 59.121 40.000 6.27 6.27 34.92 3.07
2047 5047 6.111382 CCTTTAGAGTTGAGCATCTTGATGA 58.889 40.000 14.09 0.00 34.92 2.92
2048 5048 6.596888 CCTTTAGAGTTGAGCATCTTGATGAA 59.403 38.462 14.09 0.00 34.92 2.57
2049 5049 7.282675 CCTTTAGAGTTGAGCATCTTGATGAAT 59.717 37.037 14.09 2.16 34.92 2.57
2050 5050 7.783090 TTAGAGTTGAGCATCTTGATGAATC 57.217 36.000 14.09 10.81 34.92 2.52
2051 5051 5.991861 AGAGTTGAGCATCTTGATGAATCT 58.008 37.500 14.09 4.87 34.92 2.40
2052 5052 7.122138 AGAGTTGAGCATCTTGATGAATCTA 57.878 36.000 14.09 5.79 34.92 1.98
2053 5053 6.985645 AGAGTTGAGCATCTTGATGAATCTAC 59.014 38.462 14.09 14.97 34.92 2.59
2054 5054 6.647229 AGTTGAGCATCTTGATGAATCTACA 58.353 36.000 14.09 2.54 34.92 2.74
2055 5055 6.762187 AGTTGAGCATCTTGATGAATCTACAG 59.238 38.462 14.09 0.00 34.92 2.74
2056 5056 6.231258 TGAGCATCTTGATGAATCTACAGT 57.769 37.500 14.09 0.00 34.92 3.55
2057 5057 6.647229 TGAGCATCTTGATGAATCTACAGTT 58.353 36.000 14.09 0.00 34.92 3.16
2058 5058 7.108194 TGAGCATCTTGATGAATCTACAGTTT 58.892 34.615 14.09 0.00 34.92 2.66
2059 5059 7.609146 TGAGCATCTTGATGAATCTACAGTTTT 59.391 33.333 14.09 0.00 34.92 2.43
2060 5060 8.345724 AGCATCTTGATGAATCTACAGTTTTT 57.654 30.769 14.09 0.00 0.00 1.94
2061 5061 9.453572 AGCATCTTGATGAATCTACAGTTTTTA 57.546 29.630 14.09 0.00 0.00 1.52
2062 5062 9.713740 GCATCTTGATGAATCTACAGTTTTTAG 57.286 33.333 14.09 0.00 0.00 1.85
2068 5068 9.778741 TGATGAATCTACAGTTTTTAGACTTGT 57.221 29.630 0.00 0.00 0.00 3.16
2070 5070 8.603242 TGAATCTACAGTTTTTAGACTTGTCC 57.397 34.615 0.00 0.00 0.00 4.02
2071 5071 8.208224 TGAATCTACAGTTTTTAGACTTGTCCA 58.792 33.333 0.00 0.00 0.00 4.02
2072 5072 8.608844 AATCTACAGTTTTTAGACTTGTCCAG 57.391 34.615 0.00 0.00 0.00 3.86
2073 5073 5.989777 TCTACAGTTTTTAGACTTGTCCAGC 59.010 40.000 0.00 0.00 0.00 4.85
2074 5074 4.523083 ACAGTTTTTAGACTTGTCCAGCA 58.477 39.130 0.00 0.00 0.00 4.41
2075 5075 4.947388 ACAGTTTTTAGACTTGTCCAGCAA 59.053 37.500 0.00 0.00 35.50 3.91
2076 5076 5.163652 ACAGTTTTTAGACTTGTCCAGCAAC 60.164 40.000 0.00 0.00 32.90 4.17
2077 5077 4.338400 AGTTTTTAGACTTGTCCAGCAACC 59.662 41.667 0.00 0.00 32.90 3.77
2078 5078 3.569194 TTTAGACTTGTCCAGCAACCA 57.431 42.857 0.00 0.00 32.90 3.67
2079 5079 3.569194 TTAGACTTGTCCAGCAACCAA 57.431 42.857 0.00 0.00 32.90 3.67
2080 5080 2.435372 AGACTTGTCCAGCAACCAAA 57.565 45.000 0.00 0.00 32.90 3.28
2081 5081 2.949447 AGACTTGTCCAGCAACCAAAT 58.051 42.857 0.00 0.00 32.90 2.32
2082 5082 4.098914 AGACTTGTCCAGCAACCAAATA 57.901 40.909 0.00 0.00 32.90 1.40
2083 5083 4.666512 AGACTTGTCCAGCAACCAAATAT 58.333 39.130 0.00 0.00 32.90 1.28
2084 5084 4.702131 AGACTTGTCCAGCAACCAAATATC 59.298 41.667 0.00 0.00 32.90 1.63
2085 5085 4.666512 ACTTGTCCAGCAACCAAATATCT 58.333 39.130 0.00 0.00 32.90 1.98
2086 5086 4.460382 ACTTGTCCAGCAACCAAATATCTG 59.540 41.667 0.00 0.00 32.90 2.90
2087 5087 3.355378 TGTCCAGCAACCAAATATCTGG 58.645 45.455 0.00 0.00 44.18 3.86
2088 5088 2.099756 GTCCAGCAACCAAATATCTGGC 59.900 50.000 0.00 0.00 42.92 4.85
2089 5089 2.025037 TCCAGCAACCAAATATCTGGCT 60.025 45.455 0.00 0.00 42.92 4.75
2090 5090 2.360165 CCAGCAACCAAATATCTGGCTC 59.640 50.000 0.00 0.00 40.45 4.70
2091 5091 3.285484 CAGCAACCAAATATCTGGCTCT 58.715 45.455 0.00 0.00 40.45 4.09
2092 5092 4.454678 CAGCAACCAAATATCTGGCTCTA 58.545 43.478 0.00 0.00 40.45 2.43
2093 5093 5.068636 CAGCAACCAAATATCTGGCTCTAT 58.931 41.667 0.00 0.00 40.45 1.98
2094 5094 5.533903 CAGCAACCAAATATCTGGCTCTATT 59.466 40.000 0.00 0.00 40.45 1.73
2095 5095 5.767168 AGCAACCAAATATCTGGCTCTATTC 59.233 40.000 0.00 0.00 40.45 1.75
2096 5096 5.048434 GCAACCAAATATCTGGCTCTATTCC 60.048 44.000 0.00 0.00 40.45 3.01
2097 5097 6.302269 CAACCAAATATCTGGCTCTATTCCT 58.698 40.000 0.00 0.00 40.45 3.36
2098 5098 7.453393 CAACCAAATATCTGGCTCTATTCCTA 58.547 38.462 0.00 0.00 40.45 2.94
2099 5099 7.633018 ACCAAATATCTGGCTCTATTCCTAA 57.367 36.000 0.00 0.00 40.45 2.69
2100 5100 7.454225 ACCAAATATCTGGCTCTATTCCTAAC 58.546 38.462 0.00 0.00 40.45 2.34
2101 5101 7.072454 ACCAAATATCTGGCTCTATTCCTAACA 59.928 37.037 0.00 0.00 40.45 2.41
2102 5102 7.605691 CCAAATATCTGGCTCTATTCCTAACAG 59.394 40.741 0.00 0.00 0.00 3.16
2103 5103 4.615588 ATCTGGCTCTATTCCTAACAGC 57.384 45.455 0.00 0.00 0.00 4.40
2107 5107 4.529109 GGCTCTATTCCTAACAGCCTAG 57.471 50.000 0.84 0.00 45.40 3.02
2108 5108 3.259625 GGCTCTATTCCTAACAGCCTAGG 59.740 52.174 3.67 3.67 45.40 3.02
2109 5109 4.153411 GCTCTATTCCTAACAGCCTAGGA 58.847 47.826 14.75 3.28 44.75 2.94
2118 5118 6.420638 TCCTAACAGCCTAGGAAATTTAACC 58.579 40.000 14.75 0.00 43.70 2.85
2119 5119 6.012333 TCCTAACAGCCTAGGAAATTTAACCA 60.012 38.462 14.75 0.00 43.70 3.67
2120 5120 6.661805 CCTAACAGCCTAGGAAATTTAACCAA 59.338 38.462 14.75 0.00 41.02 3.67
2121 5121 5.977489 ACAGCCTAGGAAATTTAACCAAC 57.023 39.130 14.75 0.00 0.00 3.77
2122 5122 4.770531 ACAGCCTAGGAAATTTAACCAACC 59.229 41.667 14.75 0.00 0.00 3.77
2123 5123 5.016831 CAGCCTAGGAAATTTAACCAACCT 58.983 41.667 14.75 0.00 0.00 3.50
2124 5124 6.184789 CAGCCTAGGAAATTTAACCAACCTA 58.815 40.000 14.75 0.00 0.00 3.08
2125 5125 6.318900 CAGCCTAGGAAATTTAACCAACCTAG 59.681 42.308 14.75 16.27 43.53 3.02
2126 5126 6.216868 AGCCTAGGAAATTTAACCAACCTAGA 59.783 38.462 21.54 0.00 45.43 2.43
2127 5127 6.888088 GCCTAGGAAATTTAACCAACCTAGAA 59.112 38.462 21.54 0.00 45.43 2.10
2128 5128 7.067129 GCCTAGGAAATTTAACCAACCTAGAAG 59.933 40.741 21.54 11.94 45.43 2.85
2129 5129 8.107729 CCTAGGAAATTTAACCAACCTAGAAGT 58.892 37.037 21.54 0.00 45.43 3.01
2131 5131 8.859236 AGGAAATTTAACCAACCTAGAAGTAC 57.141 34.615 0.00 0.00 0.00 2.73
2132 5132 8.666821 AGGAAATTTAACCAACCTAGAAGTACT 58.333 33.333 0.00 0.00 0.00 2.73
2133 5133 9.948964 GGAAATTTAACCAACCTAGAAGTACTA 57.051 33.333 0.00 0.00 0.00 1.82
2137 5137 7.666063 TTAACCAACCTAGAAGTACTATCCC 57.334 40.000 0.00 0.00 0.00 3.85
2138 5138 5.484734 ACCAACCTAGAAGTACTATCCCT 57.515 43.478 0.00 0.00 0.00 4.20
2139 5139 5.456779 ACCAACCTAGAAGTACTATCCCTC 58.543 45.833 0.00 0.00 0.00 4.30
2140 5140 5.196165 ACCAACCTAGAAGTACTATCCCTCT 59.804 44.000 0.00 0.00 0.00 3.69
2141 5141 6.137559 CCAACCTAGAAGTACTATCCCTCTT 58.862 44.000 0.00 0.00 0.00 2.85
2142 5142 6.612049 CCAACCTAGAAGTACTATCCCTCTTT 59.388 42.308 0.00 0.00 0.00 2.52
2143 5143 7.418025 CCAACCTAGAAGTACTATCCCTCTTTG 60.418 44.444 0.00 0.00 0.00 2.77
2151 5151 9.103861 GAAGTACTATCCCTCTTTGAAAATCAG 57.896 37.037 0.00 0.00 0.00 2.90
2160 5160 6.886459 CCCTCTTTGAAAATCAGATAACAGGA 59.114 38.462 0.00 0.00 0.00 3.86
2171 5171 7.931015 ATCAGATAACAGGACCAATACCTAA 57.069 36.000 0.00 0.00 35.84 2.69
2196 5196 2.519771 TGGGCATCTTGCTGAATCTT 57.480 45.000 0.00 0.00 44.28 2.40
2217 5217 5.301045 TCTTCAAGAGTTAGACTTGTCCGAA 59.699 40.000 0.00 0.00 43.30 4.30
2250 5250 2.158711 TGGATCTATTCCTGGCAGCTTG 60.159 50.000 9.56 0.00 45.68 4.01
2273 5417 4.216472 GGGAAATATAACCAAGCTAGCAGC 59.784 45.833 18.83 0.00 42.84 5.25
2322 5466 2.746472 CGGTTCCATTCCCCAAGAGATC 60.746 54.545 0.00 0.00 0.00 2.75
2329 5473 1.801242 TCCCCAAGAGATCGGCAATA 58.199 50.000 0.00 0.00 0.00 1.90
2345 5489 5.066375 TCGGCAATATGATGAACCTTGAAAG 59.934 40.000 0.00 0.00 0.00 2.62
2357 5501 5.420739 TGAACCTTGAAAGTTTAGGCTTGTT 59.579 36.000 4.58 0.00 32.08 2.83
2387 5531 5.127031 ACCAAATTTCGGGATCAATACCAAG 59.873 40.000 1.72 0.00 0.00 3.61
2470 5614 5.683876 TTCTCTTCCTCGAGAATTTGGAT 57.316 39.130 15.71 0.00 43.17 3.41
2485 5629 7.982252 AGAATTTGGATATCTCATCAGCCTTA 58.018 34.615 2.05 0.00 0.00 2.69
2571 5715 6.152323 GTGGTAGACTTCAATACCTCAGTGTA 59.848 42.308 3.30 0.00 41.74 2.90
2604 5748 1.227102 CGATGGCCCCATTCCAAGA 59.773 57.895 0.00 0.00 37.13 3.02
2673 5817 7.504574 TCGAACCAACTAACAGGAGATATATCA 59.495 37.037 15.08 0.00 0.00 2.15
2676 5820 8.319057 ACCAACTAACAGGAGATATATCACAA 57.681 34.615 15.08 0.00 0.00 3.33
2677 5821 8.424918 ACCAACTAACAGGAGATATATCACAAG 58.575 37.037 15.08 7.36 0.00 3.16
2712 5856 3.669536 TCCACAACTCATACAAATGCGA 58.330 40.909 0.00 0.00 32.76 5.10
2732 5876 4.740695 GCGATTAGCGTCAAATAGACTCTT 59.259 41.667 0.00 0.00 39.17 2.85
2746 5890 2.909006 AGACTCTTTGGGCAGATCTCAA 59.091 45.455 0.00 0.00 0.00 3.02
2766 5910 4.629634 TCAACAAATCTAGGTGCATGTACG 59.370 41.667 7.89 0.00 0.00 3.67
2777 5921 3.187637 GGTGCATGTACGCAACTAAAAGA 59.812 43.478 7.89 0.00 46.41 2.52
2833 5977 6.184789 TCCATACCACCAATCCTTTCTAAAC 58.815 40.000 0.00 0.00 0.00 2.01
2841 5985 7.561356 CCACCAATCCTTTCTAAACTATCCAAT 59.439 37.037 0.00 0.00 0.00 3.16
2916 6061 8.180267 CCAGAAATCTGTAGTTTAGCAAATCTG 58.820 37.037 9.43 0.00 42.27 2.90
2929 6074 9.556030 GTTTAGCAAATCTGTATAAACTCAACC 57.444 33.333 0.00 0.00 35.79 3.77
3026 6171 4.328536 TCTAGGAATAGACTGAGCGGATC 58.671 47.826 0.00 0.00 0.00 3.36
3038 6183 1.001406 GAGCGGATCAATACCTGAGGG 59.999 57.143 2.38 0.00 37.52 4.30
3042 6187 2.036475 CGGATCAATACCTGAGGGACTG 59.964 54.545 2.38 0.00 41.55 3.51
3075 6220 6.597280 GCATGAAACTAGAGTCCTTGAAGATT 59.403 38.462 0.00 0.00 0.00 2.40
3087 6232 8.062065 AGTCCTTGAAGATTAACAACAACAAA 57.938 30.769 0.00 0.00 0.00 2.83
3162 6307 8.565896 TCAAGTTAGATGTGAGCAACAATAAT 57.434 30.769 0.00 0.00 43.61 1.28
3165 6310 8.798859 AGTTAGATGTGAGCAACAATAATCTT 57.201 30.769 0.00 0.00 43.61 2.40
3173 6318 3.253230 GCAACAATAATCTTGGTGGTGC 58.747 45.455 5.27 0.00 46.40 5.01
3174 6319 4.517952 CAACAATAATCTTGGTGGTGCA 57.482 40.909 0.00 0.00 33.68 4.57
3195 6340 2.639327 GCCGCAGCAACTTGGGAAT 61.639 57.895 0.00 0.00 39.53 3.01
3256 6401 1.549243 TAGTGGCAGCATTCCGTCCA 61.549 55.000 0.00 0.00 0.00 4.02
3312 6457 4.908601 TGTGTCCTACAATGACTTGGAT 57.091 40.909 0.00 0.00 36.06 3.41
3368 6513 3.181487 GCTTCAGCAAGTTGGTTTCTTCA 60.181 43.478 4.45 0.00 41.59 3.02
3379 6524 7.418337 AGTTGGTTTCTTCACAATAAAGGTT 57.582 32.000 0.00 0.00 0.00 3.50
3402 6547 1.300963 TGGCAACATCTCTGGCCTC 59.699 57.895 3.32 0.00 46.17 4.70
3424 6569 3.243367 CCAACTTTGCGATTCAACTCCAA 60.243 43.478 0.00 0.00 33.73 3.53
3434 6579 0.250684 TCAACTCCAATTGCAGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
3528 6673 7.703197 TCTGCAATTGTTGTCATAATAATGCTG 59.297 33.333 7.40 0.00 32.76 4.41
3657 6802 6.317857 GGCAACAGAAGACTTTGATGATAAC 58.682 40.000 9.94 0.00 0.00 1.89
3672 6817 5.928264 TGATGATAACTACATCATTGGAGCG 59.072 40.000 0.00 0.00 45.71 5.03
3684 6829 2.203451 GGAGCGGGAGGATACGGA 60.203 66.667 0.00 0.00 46.39 4.69
3738 6883 2.159234 GCTAGTTGCTGTGAAGAAGCTG 59.841 50.000 0.00 0.00 41.42 4.24
3870 7015 6.692681 CCCATTCAGCGTATAAATTTCTTGTG 59.307 38.462 0.00 0.00 0.00 3.33
3902 7047 3.650950 GCAGGGAAGCCTCCACCA 61.651 66.667 3.19 0.00 44.51 4.17
3957 7102 5.138125 TGGATTGGCAAAAGAGAATTGTC 57.862 39.130 3.01 0.00 33.08 3.18
4038 7183 9.058174 CCTATAATCCATCGAGATATAACGAGT 57.942 37.037 9.06 0.00 41.63 4.18
4495 7651 3.831323 TGCTTGGAATCTTCTCCACAAA 58.169 40.909 0.00 0.00 45.37 2.83
4500 7656 5.047566 TGGAATCTTCTCCACAAACAAGA 57.952 39.130 0.00 0.00 40.71 3.02
4657 7826 0.318784 CTATCGTAGCGGAGGCCAAC 60.319 60.000 5.01 0.00 41.24 3.77
4719 7896 8.593679 CCACACATATTATTACCTCCTGTATGA 58.406 37.037 0.00 0.00 0.00 2.15
4871 10526 5.506317 CCAACAGCAAGGAAAACTAGTTGAG 60.506 44.000 9.34 0.00 37.80 3.02
4882 10618 6.239232 GGAAAACTAGTTGAGTCAGTACCTCA 60.239 42.308 9.34 0.00 37.44 3.86
4947 10683 7.811236 AGTTTCTTGTATTTCATTGCTCACATG 59.189 33.333 0.00 0.00 0.00 3.21
5025 10766 6.424509 TGGATTCAGATGCAATTGAAACAAAC 59.575 34.615 16.96 8.72 36.93 2.93
5073 10836 9.467258 TCAAATGAGAATCTTGAAAACATGAAC 57.533 29.630 0.00 0.00 34.92 3.18
5136 10902 3.703001 ATCCTGACAGTTTCCGTCATT 57.297 42.857 0.93 0.00 42.27 2.57
5156 10926 7.414429 CGTCATTCATTTCAGCTCTTTATTGGA 60.414 37.037 0.00 0.00 0.00 3.53
5214 11014 8.138712 AGAATCCGAATCTAACATGAACTAGAC 58.861 37.037 0.00 0.00 0.00 2.59
5221 11021 9.092876 GAATCTAACATGAACTAGACAGGAAAG 57.907 37.037 0.00 2.46 0.00 2.62
5254 11054 6.369890 ACATACAGTGTGTTGAGCATCTTTAG 59.630 38.462 5.88 0.00 40.28 1.85
5270 11070 6.183360 GCATCTTTAGTTCACTCTGATGCAAT 60.183 38.462 22.87 0.00 43.77 3.56
5386 11201 8.088365 ACAACCTTTACAAAAATGAGCTATTCC 58.912 33.333 0.00 0.00 0.00 3.01
5389 11204 8.088365 ACCTTTACAAAAATGAGCTATTCCAAC 58.912 33.333 0.00 0.00 0.00 3.77
5425 11240 8.880244 AGAATATATAGGTGTGTATGAAGGCAA 58.120 33.333 0.00 0.00 0.00 4.52
5426 11241 8.848474 AATATATAGGTGTGTATGAAGGCAAC 57.152 34.615 0.00 0.00 0.00 4.17
5428 11243 3.439857 AGGTGTGTATGAAGGCAACAT 57.560 42.857 0.00 0.00 41.41 2.71
5429 11244 4.568072 AGGTGTGTATGAAGGCAACATA 57.432 40.909 0.00 0.00 41.41 2.29
5430 11245 4.261801 AGGTGTGTATGAAGGCAACATAC 58.738 43.478 19.65 19.65 45.67 2.39
5436 11251 5.539582 GTATGAAGGCAACATACAACGAA 57.460 39.130 20.76 0.00 45.15 3.85
5463 11315 6.761714 GGACATTTCATCGAATAGGTAGTGTT 59.238 38.462 0.00 0.00 0.00 3.32
5464 11316 7.254455 GGACATTTCATCGAATAGGTAGTGTTG 60.254 40.741 0.00 0.00 0.00 3.33
5465 11317 7.103641 ACATTTCATCGAATAGGTAGTGTTGT 58.896 34.615 0.00 0.00 0.00 3.32
5481 11333 2.158813 TGTTGTGGGAAGAGAGGTGAAC 60.159 50.000 0.00 0.00 0.00 3.18
5523 11382 1.271871 TGGGCATTTCATCGAACAGGT 60.272 47.619 0.00 0.00 0.00 4.00
5531 11390 1.153628 ATCGAACAGGTAGCGTGCC 60.154 57.895 0.00 0.00 0.00 5.01
5541 11400 1.206523 GTAGCGTGCCGGAACTAATC 58.793 55.000 11.82 0.00 0.00 1.75
5545 11404 1.202031 GCGTGCCGGAACTAATCTTTG 60.202 52.381 11.82 0.00 0.00 2.77
5546 11405 2.073816 CGTGCCGGAACTAATCTTTGT 58.926 47.619 11.82 0.00 0.00 2.83
5547 11406 2.159707 CGTGCCGGAACTAATCTTTGTG 60.160 50.000 11.82 0.00 0.00 3.33
5548 11407 2.161609 GTGCCGGAACTAATCTTTGTGG 59.838 50.000 5.05 0.00 0.00 4.17
5549 11408 1.132453 GCCGGAACTAATCTTTGTGGC 59.868 52.381 5.05 0.00 0.00 5.01
5550 11409 1.743394 CCGGAACTAATCTTTGTGGCC 59.257 52.381 0.00 0.00 0.00 5.36
5551 11410 1.743394 CGGAACTAATCTTTGTGGCCC 59.257 52.381 0.00 0.00 0.00 5.80
5552 11411 2.618045 CGGAACTAATCTTTGTGGCCCT 60.618 50.000 0.00 0.00 0.00 5.19
5553 11412 2.755103 GGAACTAATCTTTGTGGCCCTG 59.245 50.000 0.00 0.00 0.00 4.45
5554 11413 2.514458 ACTAATCTTTGTGGCCCTGG 57.486 50.000 0.00 0.00 0.00 4.45
5555 11414 1.710809 ACTAATCTTTGTGGCCCTGGT 59.289 47.619 0.00 0.00 0.00 4.00
5556 11415 2.290960 ACTAATCTTTGTGGCCCTGGTC 60.291 50.000 0.00 0.00 0.00 4.02
5557 11416 0.482446 AATCTTTGTGGCCCTGGTCA 59.518 50.000 0.00 0.00 0.00 4.02
5558 11417 0.482446 ATCTTTGTGGCCCTGGTCAA 59.518 50.000 0.00 0.00 0.00 3.18
5559 11418 0.467290 TCTTTGTGGCCCTGGTCAAC 60.467 55.000 0.00 0.00 0.00 3.18
5560 11419 0.468029 CTTTGTGGCCCTGGTCAACT 60.468 55.000 0.00 0.00 0.00 3.16
5561 11420 0.847373 TTTGTGGCCCTGGTCAACTA 59.153 50.000 0.00 0.00 0.00 2.24
5562 11421 1.072266 TTGTGGCCCTGGTCAACTAT 58.928 50.000 0.00 0.00 0.00 2.12
5563 11422 0.618458 TGTGGCCCTGGTCAACTATC 59.382 55.000 0.00 0.00 0.00 2.08
5564 11423 0.912486 GTGGCCCTGGTCAACTATCT 59.088 55.000 0.00 0.00 0.00 1.98
5565 11424 1.134371 GTGGCCCTGGTCAACTATCTC 60.134 57.143 0.00 0.00 0.00 2.75
5566 11425 0.470341 GGCCCTGGTCAACTATCTCC 59.530 60.000 0.00 0.00 0.00 3.71
5567 11426 1.501582 GCCCTGGTCAACTATCTCCT 58.498 55.000 0.00 0.00 0.00 3.69
5568 11427 1.414550 GCCCTGGTCAACTATCTCCTC 59.585 57.143 0.00 0.00 0.00 3.71
5569 11428 2.043227 CCCTGGTCAACTATCTCCTCC 58.957 57.143 0.00 0.00 0.00 4.30
5570 11429 2.626950 CCCTGGTCAACTATCTCCTCCA 60.627 54.545 0.00 0.00 0.00 3.86
5571 11430 3.107601 CCTGGTCAACTATCTCCTCCAA 58.892 50.000 0.00 0.00 0.00 3.53
5572 11431 3.519510 CCTGGTCAACTATCTCCTCCAAA 59.480 47.826 0.00 0.00 0.00 3.28
5573 11432 4.164988 CCTGGTCAACTATCTCCTCCAAAT 59.835 45.833 0.00 0.00 0.00 2.32
5574 11433 5.339530 CCTGGTCAACTATCTCCTCCAAATT 60.340 44.000 0.00 0.00 0.00 1.82
5575 11434 6.139679 TGGTCAACTATCTCCTCCAAATTT 57.860 37.500 0.00 0.00 0.00 1.82
5576 11435 6.552008 TGGTCAACTATCTCCTCCAAATTTT 58.448 36.000 0.00 0.00 0.00 1.82
5577 11436 6.434028 TGGTCAACTATCTCCTCCAAATTTTG 59.566 38.462 1.99 1.99 0.00 2.44
5578 11437 6.659242 GGTCAACTATCTCCTCCAAATTTTGA 59.341 38.462 10.72 0.00 0.00 2.69
5579 11438 7.148171 GGTCAACTATCTCCTCCAAATTTTGAG 60.148 40.741 10.72 11.45 0.00 3.02
5580 11439 7.391833 GTCAACTATCTCCTCCAAATTTTGAGT 59.608 37.037 15.87 1.01 0.00 3.41
5581 11440 7.607991 TCAACTATCTCCTCCAAATTTTGAGTC 59.392 37.037 15.87 0.00 0.00 3.36
5582 11441 7.264294 ACTATCTCCTCCAAATTTTGAGTCT 57.736 36.000 15.87 3.19 0.00 3.24
5583 11442 7.694093 ACTATCTCCTCCAAATTTTGAGTCTT 58.306 34.615 15.87 3.60 0.00 3.01
5584 11443 7.826744 ACTATCTCCTCCAAATTTTGAGTCTTC 59.173 37.037 15.87 0.00 0.00 2.87
5585 11444 6.192970 TCTCCTCCAAATTTTGAGTCTTCT 57.807 37.500 15.87 0.00 0.00 2.85
5586 11445 6.234177 TCTCCTCCAAATTTTGAGTCTTCTC 58.766 40.000 15.87 0.00 40.79 2.87
5587 11446 5.316987 TCCTCCAAATTTTGAGTCTTCTCC 58.683 41.667 15.87 0.00 39.75 3.71
5588 11447 5.072741 CCTCCAAATTTTGAGTCTTCTCCA 58.927 41.667 15.87 0.00 39.75 3.86
5589 11448 5.536161 CCTCCAAATTTTGAGTCTTCTCCAA 59.464 40.000 15.87 0.00 39.75 3.53
5590 11449 6.294397 CCTCCAAATTTTGAGTCTTCTCCAAG 60.294 42.308 15.87 0.00 39.75 3.61
5591 11450 6.364701 TCCAAATTTTGAGTCTTCTCCAAGA 58.635 36.000 10.72 0.00 39.75 3.02
5592 11451 6.833416 TCCAAATTTTGAGTCTTCTCCAAGAA 59.167 34.615 10.72 0.00 40.49 2.52
5593 11452 7.341769 TCCAAATTTTGAGTCTTCTCCAAGAAA 59.658 33.333 10.72 0.00 40.49 2.52
5594 11453 8.146412 CCAAATTTTGAGTCTTCTCCAAGAAAT 58.854 33.333 10.72 0.00 40.49 2.17
5595 11454 8.975439 CAAATTTTGAGTCTTCTCCAAGAAATG 58.025 33.333 2.88 0.00 40.49 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.497138 TCATGACCACACAAGCTGAAG 58.503 47.619 0.00 0.00 0.00 3.02
23 1092 2.391389 GCCTGTACAACCGAGCAGC 61.391 63.158 0.00 0.00 0.00 5.25
30 1099 4.782019 TGAATTCAATGCCTGTACAACC 57.218 40.909 5.45 0.00 0.00 3.77
38 1107 6.056884 ACAATTTGTGTTGAATTCAATGCCT 58.943 32.000 23.05 4.93 37.01 4.75
62 1131 1.699634 GGGAATATGAGGCAGTGGCTA 59.300 52.381 20.63 4.42 38.98 3.93
66 1135 2.173356 TCCAAGGGAATATGAGGCAGTG 59.827 50.000 0.00 0.00 0.00 3.66
69 1138 2.092429 GTGTCCAAGGGAATATGAGGCA 60.092 50.000 0.00 0.00 31.38 4.75
98 1167 1.908299 GGGCCCCAAGTCTTGTTGG 60.908 63.158 12.23 11.88 45.88 3.77
129 1198 4.466015 AGGTTTCAGTGTTGAATTGTGGTT 59.534 37.500 0.00 0.00 42.60 3.67
146 1215 4.446385 GGCGGTTGTGAAAATAAAGGTTTC 59.554 41.667 0.00 0.00 35.87 2.78
155 1224 0.820074 TCACCGGCGGTTGTGAAAAT 60.820 50.000 32.12 0.16 38.48 1.82
177 1247 6.074569 CGCAACAAAAATTTACGTGGAAATCT 60.075 34.615 0.00 0.00 0.00 2.40
186 1256 3.195846 CGCAACGCAACAAAAATTTACG 58.804 40.909 0.00 0.00 0.00 3.18
202 1275 0.512952 CTTGTGACTAGTGGCGCAAC 59.487 55.000 6.88 6.88 31.88 4.17
212 1285 5.801531 TTTAGCTCAAGGACTTGTGACTA 57.198 39.130 15.87 13.01 41.16 2.59
219 1292 6.613153 ACAGACTATTTAGCTCAAGGACTT 57.387 37.500 0.00 0.00 0.00 3.01
226 1299 8.585881 ACAAACTAGAACAGACTATTTAGCTCA 58.414 33.333 0.00 0.00 0.00 4.26
237 1310 3.554324 TGCAACGACAAACTAGAACAGAC 59.446 43.478 0.00 0.00 0.00 3.51
271 1344 3.829044 TACGTCCGCGGACCCATG 61.829 66.667 43.58 33.42 41.76 3.66
277 1350 0.664166 GTTTTCTGTACGTCCGCGGA 60.664 55.000 27.28 27.28 43.45 5.54
278 1351 1.777199 GTTTTCTGTACGTCCGCGG 59.223 57.895 22.12 22.12 43.45 6.46
279 1352 1.409579 CGTTTTCTGTACGTCCGCG 59.590 57.895 0.00 0.00 44.93 6.46
282 1355 2.938869 ACTAGCGTTTTCTGTACGTCC 58.061 47.619 0.00 0.00 40.92 4.79
341 1414 2.366533 ACAATCAAGCAGCATCTCCAG 58.633 47.619 0.00 0.00 0.00 3.86
344 1417 3.311871 CCTGTACAATCAAGCAGCATCTC 59.688 47.826 0.00 0.00 0.00 2.75
354 1427 6.889177 TGGAATATCAAAGCCTGTACAATCAA 59.111 34.615 0.00 0.00 0.00 2.57
357 1430 6.186957 TGTGGAATATCAAAGCCTGTACAAT 58.813 36.000 0.00 0.00 0.00 2.71
366 1439 6.030228 GCTGTAACTTGTGGAATATCAAAGC 58.970 40.000 0.00 0.00 0.00 3.51
368 1441 5.935206 TCGCTGTAACTTGTGGAATATCAAA 59.065 36.000 0.00 0.00 0.00 2.69
373 1446 6.293735 CCTTTTTCGCTGTAACTTGTGGAATA 60.294 38.462 0.00 0.00 0.00 1.75
382 1455 3.547746 TGTTCCCTTTTTCGCTGTAACT 58.452 40.909 0.00 0.00 0.00 2.24
393 1466 8.880244 AGCCTATTTTCTAAAATGTTCCCTTTT 58.120 29.630 10.26 0.00 38.90 2.27
394 1467 8.435931 AGCCTATTTTCTAAAATGTTCCCTTT 57.564 30.769 10.26 0.00 38.90 3.11
396 1469 8.336987 AGTAGCCTATTTTCTAAAATGTTCCCT 58.663 33.333 10.26 3.66 38.90 4.20
408 1481 8.157476 TGAAGAAACTGAAGTAGCCTATTTTCT 58.843 33.333 0.00 0.00 34.35 2.52
411 1484 9.959721 TTATGAAGAAACTGAAGTAGCCTATTT 57.040 29.630 0.00 0.00 0.00 1.40
416 1489 7.336931 TCCAATTATGAAGAAACTGAAGTAGCC 59.663 37.037 0.00 0.00 0.00 3.93
417 1490 8.268850 TCCAATTATGAAGAAACTGAAGTAGC 57.731 34.615 0.00 0.00 0.00 3.58
418 1491 8.394121 GCTCCAATTATGAAGAAACTGAAGTAG 58.606 37.037 0.00 0.00 0.00 2.57
419 1492 7.882791 TGCTCCAATTATGAAGAAACTGAAGTA 59.117 33.333 0.00 0.00 0.00 2.24
420 1493 6.716628 TGCTCCAATTATGAAGAAACTGAAGT 59.283 34.615 0.00 0.00 0.00 3.01
424 1497 6.149973 TCACTGCTCCAATTATGAAGAAACTG 59.850 38.462 0.00 0.00 0.00 3.16
425 1498 6.150140 GTCACTGCTCCAATTATGAAGAAACT 59.850 38.462 0.00 0.00 0.00 2.66
426 1499 6.317857 GTCACTGCTCCAATTATGAAGAAAC 58.682 40.000 0.00 0.00 0.00 2.78
428 1501 4.943705 GGTCACTGCTCCAATTATGAAGAA 59.056 41.667 0.00 0.00 0.00 2.52
429 1502 4.019411 TGGTCACTGCTCCAATTATGAAGA 60.019 41.667 0.00 0.00 0.00 2.87
430 1503 4.264253 TGGTCACTGCTCCAATTATGAAG 58.736 43.478 0.00 0.00 0.00 3.02
431 1504 4.299586 TGGTCACTGCTCCAATTATGAA 57.700 40.909 0.00 0.00 0.00 2.57
433 1506 4.701651 TCTTTGGTCACTGCTCCAATTATG 59.298 41.667 0.00 0.00 42.25 1.90
434 1507 4.922206 TCTTTGGTCACTGCTCCAATTAT 58.078 39.130 0.00 0.00 42.25 1.28
435 1508 4.365514 TCTTTGGTCACTGCTCCAATTA 57.634 40.909 0.00 0.00 42.25 1.40
436 1509 3.228188 TCTTTGGTCACTGCTCCAATT 57.772 42.857 0.00 0.00 42.25 2.32
439 1512 2.727123 TTTCTTTGGTCACTGCTCCA 57.273 45.000 0.00 0.00 0.00 3.86
441 1514 4.072131 TGGTATTTCTTTGGTCACTGCTC 58.928 43.478 0.00 0.00 0.00 4.26
442 1515 4.098914 TGGTATTTCTTTGGTCACTGCT 57.901 40.909 0.00 0.00 0.00 4.24
443 1516 4.458989 TGATGGTATTTCTTTGGTCACTGC 59.541 41.667 0.00 0.00 0.00 4.40
444 1517 6.573664 TTGATGGTATTTCTTTGGTCACTG 57.426 37.500 0.00 0.00 0.00 3.66
446 1519 6.744112 TGTTTGATGGTATTTCTTTGGTCAC 58.256 36.000 0.00 0.00 0.00 3.67
449 1522 7.069331 TGACTTGTTTGATGGTATTTCTTTGGT 59.931 33.333 0.00 0.00 0.00 3.67
450 1523 7.382218 GTGACTTGTTTGATGGTATTTCTTTGG 59.618 37.037 0.00 0.00 0.00 3.28
451 1524 7.920151 TGTGACTTGTTTGATGGTATTTCTTTG 59.080 33.333 0.00 0.00 0.00 2.77
452 1525 8.006298 TGTGACTTGTTTGATGGTATTTCTTT 57.994 30.769 0.00 0.00 0.00 2.52
453 1526 7.502226 TCTGTGACTTGTTTGATGGTATTTCTT 59.498 33.333 0.00 0.00 0.00 2.52
454 1527 6.998074 TCTGTGACTTGTTTGATGGTATTTCT 59.002 34.615 0.00 0.00 0.00 2.52
455 1528 7.202016 TCTGTGACTTGTTTGATGGTATTTC 57.798 36.000 0.00 0.00 0.00 2.17
457 1530 6.998074 TCTTCTGTGACTTGTTTGATGGTATT 59.002 34.615 0.00 0.00 0.00 1.89
458 1531 6.533730 TCTTCTGTGACTTGTTTGATGGTAT 58.466 36.000 0.00 0.00 0.00 2.73
459 1532 5.924356 TCTTCTGTGACTTGTTTGATGGTA 58.076 37.500 0.00 0.00 0.00 3.25
460 1533 4.780815 TCTTCTGTGACTTGTTTGATGGT 58.219 39.130 0.00 0.00 0.00 3.55
461 1534 5.954296 ATCTTCTGTGACTTGTTTGATGG 57.046 39.130 0.00 0.00 0.00 3.51
462 1535 7.172190 ACAGTATCTTCTGTGACTTGTTTGATG 59.828 37.037 0.00 0.00 45.40 3.07
463 1536 7.220030 ACAGTATCTTCTGTGACTTGTTTGAT 58.780 34.615 0.00 0.00 45.40 2.57
464 1537 6.582636 ACAGTATCTTCTGTGACTTGTTTGA 58.417 36.000 0.00 0.00 45.40 2.69
466 1539 6.582636 TGACAGTATCTTCTGTGACTTGTTT 58.417 36.000 4.06 0.00 46.81 2.83
467 1540 6.161855 TGACAGTATCTTCTGTGACTTGTT 57.838 37.500 4.06 0.00 46.81 2.83
468 1541 5.791336 TGACAGTATCTTCTGTGACTTGT 57.209 39.130 4.06 0.00 46.81 3.16
469 1542 7.664082 ATTTGACAGTATCTTCTGTGACTTG 57.336 36.000 4.06 0.00 46.81 3.16
470 1543 9.778741 TTTATTTGACAGTATCTTCTGTGACTT 57.221 29.630 4.06 0.00 46.81 3.01
471 1544 9.209175 GTTTATTTGACAGTATCTTCTGTGACT 57.791 33.333 4.06 0.00 46.81 3.41
472 1545 8.988934 TGTTTATTTGACAGTATCTTCTGTGAC 58.011 33.333 4.06 0.00 46.81 3.67
507 1580 8.106462 TGGTATCTCCTGTGATTTGTTTGATAA 58.894 33.333 0.00 0.00 37.07 1.75
508 1581 7.629157 TGGTATCTCCTGTGATTTGTTTGATA 58.371 34.615 0.00 0.00 37.07 2.15
509 1582 6.484288 TGGTATCTCCTGTGATTTGTTTGAT 58.516 36.000 0.00 0.00 37.07 2.57
510 1583 5.875224 TGGTATCTCCTGTGATTTGTTTGA 58.125 37.500 0.00 0.00 37.07 2.69
511 1584 5.392380 GCTGGTATCTCCTGTGATTTGTTTG 60.392 44.000 0.00 0.00 37.45 2.93
512 1585 4.702131 GCTGGTATCTCCTGTGATTTGTTT 59.298 41.667 0.00 0.00 37.45 2.83
514 1587 3.264193 TGCTGGTATCTCCTGTGATTTGT 59.736 43.478 0.00 0.00 37.45 2.83
515 1588 3.877559 TGCTGGTATCTCCTGTGATTTG 58.122 45.455 0.00 0.00 37.45 2.32
517 1590 4.574674 TTTGCTGGTATCTCCTGTGATT 57.425 40.909 0.00 0.00 37.45 2.57
519 1592 5.692115 TTATTTGCTGGTATCTCCTGTGA 57.308 39.130 0.00 0.00 37.45 3.58
520 1593 6.757897 TTTTATTTGCTGGTATCTCCTGTG 57.242 37.500 0.00 0.00 37.45 3.66
545 1618 9.918630 CCTGTGATTTGTTTGATAGAATTTCTT 57.081 29.630 3.86 0.00 0.00 2.52
547 1620 9.565213 CTCCTGTGATTTGTTTGATAGAATTTC 57.435 33.333 0.00 0.00 0.00 2.17
548 1621 9.300681 TCTCCTGTGATTTGTTTGATAGAATTT 57.699 29.630 0.00 0.00 0.00 1.82
551 1624 9.383519 GTATCTCCTGTGATTTGTTTGATAGAA 57.616 33.333 0.00 0.00 0.00 2.10
554 1627 7.629157 TGGTATCTCCTGTGATTTGTTTGATA 58.371 34.615 0.00 0.00 37.07 2.15
555 1628 6.484288 TGGTATCTCCTGTGATTTGTTTGAT 58.516 36.000 0.00 0.00 37.07 2.57
556 1629 5.875224 TGGTATCTCCTGTGATTTGTTTGA 58.125 37.500 0.00 0.00 37.07 2.69
557 1630 5.392380 GCTGGTATCTCCTGTGATTTGTTTG 60.392 44.000 0.00 0.00 37.45 2.93
558 1631 4.702131 GCTGGTATCTCCTGTGATTTGTTT 59.298 41.667 0.00 0.00 37.45 2.83
559 1632 4.263462 TGCTGGTATCTCCTGTGATTTGTT 60.263 41.667 0.00 0.00 37.45 2.83
560 1633 3.264193 TGCTGGTATCTCCTGTGATTTGT 59.736 43.478 0.00 0.00 37.45 2.83
561 1634 3.877559 TGCTGGTATCTCCTGTGATTTG 58.122 45.455 0.00 0.00 37.45 2.32
563 1636 4.574674 TTTGCTGGTATCTCCTGTGATT 57.425 40.909 0.00 0.00 37.45 2.57
564 1637 4.785346 ATTTGCTGGTATCTCCTGTGAT 57.215 40.909 0.00 0.00 37.45 3.06
565 1638 5.692115 TTATTTGCTGGTATCTCCTGTGA 57.308 39.130 0.00 0.00 37.45 3.58
566 1639 6.757897 TTTTATTTGCTGGTATCTCCTGTG 57.242 37.500 0.00 0.00 37.45 3.66
592 1665 9.300681 TCCTGTGATTTGTTTGATAGAATTTCT 57.699 29.630 4.03 4.03 0.00 2.52
639 3592 6.237901 TGGACTTGAGTTAACATTGCAGTAT 58.762 36.000 8.61 0.00 0.00 2.12
643 3596 5.534278 TGAATGGACTTGAGTTAACATTGCA 59.466 36.000 8.61 0.00 31.90 4.08
669 3622 1.403647 CCTCCGTCGACAACTTATGCA 60.404 52.381 17.16 0.00 0.00 3.96
672 3625 2.719739 TCTCCTCCGTCGACAACTTAT 58.280 47.619 17.16 0.00 0.00 1.73
673 3626 2.189594 TCTCCTCCGTCGACAACTTA 57.810 50.000 17.16 0.00 0.00 2.24
674 3627 1.325355 TTCTCCTCCGTCGACAACTT 58.675 50.000 17.16 0.00 0.00 2.66
679 3632 0.179108 CCCAATTCTCCTCCGTCGAC 60.179 60.000 5.18 5.18 0.00 4.20
681 3634 0.535335 TTCCCAATTCTCCTCCGTCG 59.465 55.000 0.00 0.00 0.00 5.12
682 3635 2.236395 TCTTTCCCAATTCTCCTCCGTC 59.764 50.000 0.00 0.00 0.00 4.79
685 3638 6.192970 TCATATCTTTCCCAATTCTCCTCC 57.807 41.667 0.00 0.00 0.00 4.30
686 3639 7.456725 TCATCATATCTTTCCCAATTCTCCTC 58.543 38.462 0.00 0.00 0.00 3.71
698 3651 5.795939 CGTACGCCTACTCATCATATCTTTC 59.204 44.000 0.52 0.00 0.00 2.62
718 3671 1.353076 CTAGAAAACCCACGGCGTAC 58.647 55.000 14.22 0.00 0.00 3.67
721 3674 0.320946 TTCCTAGAAAACCCACGGCG 60.321 55.000 4.80 4.80 0.00 6.46
724 3677 6.373186 GGAATTATTCCTAGAAAACCCACG 57.627 41.667 16.16 0.00 46.57 4.94
758 3716 5.964958 TTTCTTTCCTCATTCATGTGGAC 57.035 39.130 9.64 0.00 46.58 4.02
765 3723 5.310594 TCCTCTCCTTTTCTTTCCTCATTCA 59.689 40.000 0.00 0.00 0.00 2.57
782 3740 0.387565 GTCGCCATCTCTTCCTCTCC 59.612 60.000 0.00 0.00 0.00 3.71
783 3741 0.030101 CGTCGCCATCTCTTCCTCTC 59.970 60.000 0.00 0.00 0.00 3.20
802 3760 3.612717 GCTGCCTGTTTTCCTTCTTTAGC 60.613 47.826 0.00 0.00 0.00 3.09
805 3763 1.688735 GGCTGCCTGTTTTCCTTCTTT 59.311 47.619 12.43 0.00 0.00 2.52
827 3786 1.364626 CTCCTTTGGCAGCTGCTACG 61.365 60.000 35.82 23.03 41.70 3.51
829 3788 0.914644 ATCTCCTTTGGCAGCTGCTA 59.085 50.000 35.82 29.61 41.70 3.49
846 3805 3.786635 ACTATTCTTCAGTGTCGCCATC 58.213 45.455 0.00 0.00 0.00 3.51
848 3807 2.560981 TGACTATTCTTCAGTGTCGCCA 59.439 45.455 0.00 0.00 0.00 5.69
851 3810 4.998788 TGGATGACTATTCTTCAGTGTCG 58.001 43.478 0.00 0.00 0.00 4.35
877 3843 0.969149 ACGAGTTGAGTGGATGCTGA 59.031 50.000 0.00 0.00 0.00 4.26
894 3860 1.934589 TCCTTCAGTGAACACACACG 58.065 50.000 0.08 0.00 44.35 4.49
948 3939 2.609459 CGGAGGTGATTCAATACACAGC 59.391 50.000 0.00 0.00 38.57 4.40
949 3940 2.609459 GCGGAGGTGATTCAATACACAG 59.391 50.000 0.00 0.00 38.57 3.66
956 3947 1.234821 GTGTTGCGGAGGTGATTCAA 58.765 50.000 0.00 0.00 0.00 2.69
965 3956 0.522626 TTGCATGATGTGTTGCGGAG 59.477 50.000 0.00 0.00 41.80 4.63
969 3960 2.473609 CACTGTTTGCATGATGTGTTGC 59.526 45.455 0.00 0.00 39.33 4.17
977 3974 1.808531 GCTGCCCACTGTTTGCATGA 61.809 55.000 0.00 0.00 33.97 3.07
1012 4009 1.812571 GAGGTACTGCAATGGTGTTGG 59.187 52.381 0.00 0.00 41.55 3.77
1024 4021 3.055094 ACCAACATTAGGCTGAGGTACTG 60.055 47.826 0.00 0.00 41.55 2.74
1033 4033 1.477553 CATGGCACCAACATTAGGCT 58.522 50.000 0.00 0.00 0.00 4.58
1039 4039 0.251922 AGAAGGCATGGCACCAACAT 60.252 50.000 22.64 0.00 0.00 2.71
1085 4085 0.833287 CGTTGAGATCCCTCCATGGT 59.167 55.000 12.58 0.00 38.66 3.55
1102 4102 0.674895 GCCATGCTTTGAGACCTCGT 60.675 55.000 0.00 0.00 0.00 4.18
1114 4114 1.927527 AGTGGAGAAGGGCCATGCT 60.928 57.895 0.00 0.00 37.81 3.79
1125 4125 0.843309 TTGTGGCTTTCCAGTGGAGA 59.157 50.000 12.67 7.15 44.48 3.71
1140 4140 0.960364 ACGGTGGGCTTGCTATTGTG 60.960 55.000 0.00 0.00 0.00 3.33
1146 4146 3.850098 CTGGAACGGTGGGCTTGCT 62.850 63.158 0.00 0.00 0.00 3.91
1161 4161 1.836166 TCCTTCCAAGAGCTCATCTGG 59.164 52.381 17.77 18.34 38.67 3.86
1183 4183 1.829533 AGTTGCAGGGGCTTGTGTG 60.830 57.895 0.00 0.00 41.91 3.82
1188 4188 2.116125 GTCCAGTTGCAGGGGCTT 59.884 61.111 0.00 0.00 41.91 4.35
1320 4320 6.656693 GGTCAATATATGTGAGGAATGGAAGG 59.343 42.308 0.00 0.00 0.00 3.46
1347 4347 2.433239 ACCGTGGAGACTGTTGTTACTT 59.567 45.455 0.00 0.00 0.00 2.24
1379 4379 3.226777 GCTGAGAGGGAGCTGATACTAA 58.773 50.000 0.00 0.00 33.37 2.24
1395 4395 2.737252 GGTAAGAACCGAAAGTGCTGAG 59.263 50.000 0.00 0.00 33.06 3.35
1415 4415 1.901650 GAGCTGGTTGTCGCGAAAGG 61.902 60.000 12.06 0.00 0.00 3.11
1417 4417 1.227409 TGAGCTGGTTGTCGCGAAA 60.227 52.632 12.06 0.54 0.00 3.46
1421 4421 2.320587 CCTGTGAGCTGGTTGTCGC 61.321 63.158 0.00 0.00 0.00 5.19
1423 4423 0.108585 TTCCCTGTGAGCTGGTTGTC 59.891 55.000 0.00 0.00 32.49 3.18
1452 4452 0.102120 TTTGCAAGCCACCAAACTCG 59.898 50.000 0.00 0.00 0.00 4.18
1491 4491 4.386049 CGTCCTGTGAGTCTGTTAAATGAC 59.614 45.833 0.00 2.02 0.00 3.06
1514 4514 0.599060 GCCTAGAGACGCAGGGATAC 59.401 60.000 0.00 0.00 32.15 2.24
1629 4629 2.638480 AGGTGTTGTTGCTTAGCTGA 57.362 45.000 5.60 0.00 0.00 4.26
1694 4694 7.348080 TGATTACCAAACATGTACAAACCAA 57.652 32.000 0.00 0.00 0.00 3.67
1697 4697 8.865590 AAGTTGATTACCAAACATGTACAAAC 57.134 30.769 0.00 0.00 36.36 2.93
1705 4705 5.279456 GCCCTGAAAGTTGATTACCAAACAT 60.279 40.000 0.00 0.00 36.36 2.71
1749 4749 7.669722 TGAAGAATTTGTAAATGGACTAGCCTT 59.330 33.333 5.06 0.00 37.63 4.35
1780 4780 7.395190 TTGGACCTGAAATATCATTTGAGTG 57.605 36.000 0.00 0.00 34.37 3.51
1782 4782 8.139989 GGAATTGGACCTGAAATATCATTTGAG 58.860 37.037 0.00 0.00 34.37 3.02
1792 4792 5.547276 TGGAAATTGGAATTGGACCTGAAAT 59.453 36.000 0.00 0.00 0.00 2.17
1901 4901 4.932200 AGAGAGCAAGTTGTTGTAGCATAC 59.068 41.667 4.48 0.00 43.42 2.39
1909 4909 5.484173 TTTGTGTAGAGAGCAAGTTGTTG 57.516 39.130 4.48 0.00 36.67 3.33
1911 4911 5.368145 TGATTTGTGTAGAGAGCAAGTTGT 58.632 37.500 4.48 0.00 0.00 3.32
1974 4974 9.319143 GTATAGAGAACAAGTACATTGAGCATT 57.681 33.333 10.71 0.00 41.83 3.56
2031 5031 6.538021 ACTGTAGATTCATCAAGATGCTCAAC 59.462 38.462 5.19 1.61 38.65 3.18
2032 5032 6.647229 ACTGTAGATTCATCAAGATGCTCAA 58.353 36.000 5.19 0.00 38.65 3.02
2033 5033 6.231258 ACTGTAGATTCATCAAGATGCTCA 57.769 37.500 5.19 0.00 38.65 4.26
2034 5034 7.551035 AAACTGTAGATTCATCAAGATGCTC 57.449 36.000 5.19 5.10 38.65 4.26
2035 5035 7.934855 AAAACTGTAGATTCATCAAGATGCT 57.065 32.000 5.19 0.41 38.65 3.79
2036 5036 9.713740 CTAAAAACTGTAGATTCATCAAGATGC 57.286 33.333 5.19 0.00 38.65 3.91
2042 5042 9.778741 ACAAGTCTAAAAACTGTAGATTCATCA 57.221 29.630 0.00 0.00 30.52 3.07
2044 5044 9.220767 GGACAAGTCTAAAAACTGTAGATTCAT 57.779 33.333 0.00 0.00 30.52 2.57
2045 5045 8.208224 TGGACAAGTCTAAAAACTGTAGATTCA 58.792 33.333 0.00 0.00 30.52 2.57
2046 5046 8.603242 TGGACAAGTCTAAAAACTGTAGATTC 57.397 34.615 0.00 0.00 30.52 2.52
2047 5047 7.173390 GCTGGACAAGTCTAAAAACTGTAGATT 59.827 37.037 0.00 0.00 30.52 2.40
2048 5048 6.651225 GCTGGACAAGTCTAAAAACTGTAGAT 59.349 38.462 0.00 0.00 30.52 1.98
2049 5049 5.989777 GCTGGACAAGTCTAAAAACTGTAGA 59.010 40.000 0.00 0.00 0.00 2.59
2050 5050 5.758296 TGCTGGACAAGTCTAAAAACTGTAG 59.242 40.000 0.00 0.00 0.00 2.74
2051 5051 5.676552 TGCTGGACAAGTCTAAAAACTGTA 58.323 37.500 0.00 0.00 0.00 2.74
2052 5052 4.523083 TGCTGGACAAGTCTAAAAACTGT 58.477 39.130 0.00 0.00 0.00 3.55
2053 5053 5.273944 GTTGCTGGACAAGTCTAAAAACTG 58.726 41.667 0.00 0.00 39.50 3.16
2054 5054 4.338400 GGTTGCTGGACAAGTCTAAAAACT 59.662 41.667 0.00 0.00 39.50 2.66
2055 5055 4.097286 TGGTTGCTGGACAAGTCTAAAAAC 59.903 41.667 0.00 2.20 39.50 2.43
2056 5056 4.274147 TGGTTGCTGGACAAGTCTAAAAA 58.726 39.130 0.00 0.00 39.50 1.94
2057 5057 3.892284 TGGTTGCTGGACAAGTCTAAAA 58.108 40.909 0.00 0.00 39.50 1.52
2058 5058 3.569194 TGGTTGCTGGACAAGTCTAAA 57.431 42.857 0.00 0.00 39.50 1.85
2059 5059 3.569194 TTGGTTGCTGGACAAGTCTAA 57.431 42.857 0.00 0.00 39.50 2.10
2060 5060 3.569194 TTTGGTTGCTGGACAAGTCTA 57.431 42.857 0.00 0.00 39.50 2.59
2061 5061 2.435372 TTTGGTTGCTGGACAAGTCT 57.565 45.000 0.00 0.00 39.50 3.24
2062 5062 4.702131 AGATATTTGGTTGCTGGACAAGTC 59.298 41.667 0.00 0.00 39.50 3.01
2063 5063 4.460382 CAGATATTTGGTTGCTGGACAAGT 59.540 41.667 0.00 0.00 39.50 3.16
2064 5064 4.990257 CAGATATTTGGTTGCTGGACAAG 58.010 43.478 0.00 0.00 39.50 3.16
2069 5069 2.360165 GAGCCAGATATTTGGTTGCTGG 59.640 50.000 13.50 7.02 46.82 4.85
2070 5070 3.285484 AGAGCCAGATATTTGGTTGCTG 58.715 45.455 13.50 0.00 40.49 4.41
2071 5071 3.659183 AGAGCCAGATATTTGGTTGCT 57.341 42.857 13.50 4.87 40.49 3.91
2072 5072 5.048434 GGAATAGAGCCAGATATTTGGTTGC 60.048 44.000 13.50 1.93 40.49 4.17
2073 5073 6.302269 AGGAATAGAGCCAGATATTTGGTTG 58.698 40.000 13.50 0.00 40.49 3.77
2074 5074 6.521527 AGGAATAGAGCCAGATATTTGGTT 57.478 37.500 13.50 7.74 40.49 3.67
2075 5075 7.072454 TGTTAGGAATAGAGCCAGATATTTGGT 59.928 37.037 13.50 1.20 40.49 3.67
2076 5076 7.453393 TGTTAGGAATAGAGCCAGATATTTGG 58.547 38.462 7.94 7.94 41.35 3.28
2077 5077 7.118971 GCTGTTAGGAATAGAGCCAGATATTTG 59.881 40.741 0.00 0.00 0.00 2.32
2078 5078 7.164803 GCTGTTAGGAATAGAGCCAGATATTT 58.835 38.462 0.00 0.00 0.00 1.40
2079 5079 6.706295 GCTGTTAGGAATAGAGCCAGATATT 58.294 40.000 0.00 0.00 0.00 1.28
2080 5080 6.293004 GCTGTTAGGAATAGAGCCAGATAT 57.707 41.667 0.00 0.00 0.00 1.63
2081 5081 5.730296 GCTGTTAGGAATAGAGCCAGATA 57.270 43.478 0.00 0.00 0.00 1.98
2082 5082 4.615588 GCTGTTAGGAATAGAGCCAGAT 57.384 45.455 0.00 0.00 0.00 2.90
2086 5086 4.997670 TCCTAGGCTGTTAGGAATAGAGCC 60.998 50.000 2.96 0.00 44.78 4.70
2087 5087 4.153411 TCCTAGGCTGTTAGGAATAGAGC 58.847 47.826 2.96 0.00 44.78 4.09
2094 5094 6.012333 TGGTTAAATTTCCTAGGCTGTTAGGA 60.012 38.462 2.96 0.18 45.79 2.94
2095 5095 6.184789 TGGTTAAATTTCCTAGGCTGTTAGG 58.815 40.000 2.96 0.00 41.36 2.69
2096 5096 7.362660 GGTTGGTTAAATTTCCTAGGCTGTTAG 60.363 40.741 2.96 0.00 0.00 2.34
2097 5097 6.434965 GGTTGGTTAAATTTCCTAGGCTGTTA 59.565 38.462 2.96 0.00 0.00 2.41
2098 5098 5.245301 GGTTGGTTAAATTTCCTAGGCTGTT 59.755 40.000 2.96 0.00 0.00 3.16
2099 5099 4.770531 GGTTGGTTAAATTTCCTAGGCTGT 59.229 41.667 2.96 0.00 0.00 4.40
2100 5100 5.016831 AGGTTGGTTAAATTTCCTAGGCTG 58.983 41.667 2.96 0.00 0.00 4.85
2101 5101 5.270979 AGGTTGGTTAAATTTCCTAGGCT 57.729 39.130 2.96 0.00 0.00 4.58
2102 5102 6.420638 TCTAGGTTGGTTAAATTTCCTAGGC 58.579 40.000 20.22 1.59 42.49 3.93
2103 5103 8.107729 ACTTCTAGGTTGGTTAAATTTCCTAGG 58.892 37.037 20.22 0.82 42.49 3.02
2105 5105 9.948964 GTACTTCTAGGTTGGTTAAATTTCCTA 57.051 33.333 0.00 0.00 0.00 2.94
2106 5106 8.666821 AGTACTTCTAGGTTGGTTAAATTTCCT 58.333 33.333 0.00 0.00 0.00 3.36
2107 5107 8.859236 AGTACTTCTAGGTTGGTTAAATTTCC 57.141 34.615 0.00 0.00 0.00 3.13
2111 5111 8.712103 GGGATAGTACTTCTAGGTTGGTTAAAT 58.288 37.037 0.00 0.00 31.67 1.40
2112 5112 7.902941 AGGGATAGTACTTCTAGGTTGGTTAAA 59.097 37.037 0.00 0.00 31.67 1.52
2113 5113 7.425003 AGGGATAGTACTTCTAGGTTGGTTAA 58.575 38.462 0.00 0.00 31.67 2.01
2114 5114 6.989894 AGGGATAGTACTTCTAGGTTGGTTA 58.010 40.000 0.00 0.00 31.67 2.85
2115 5115 5.851418 AGGGATAGTACTTCTAGGTTGGTT 58.149 41.667 0.00 0.00 31.67 3.67
2116 5116 5.196165 AGAGGGATAGTACTTCTAGGTTGGT 59.804 44.000 0.00 0.00 31.67 3.67
2117 5117 5.707495 AGAGGGATAGTACTTCTAGGTTGG 58.293 45.833 0.00 0.00 31.67 3.77
2118 5118 7.342284 TCAAAGAGGGATAGTACTTCTAGGTTG 59.658 40.741 0.00 0.00 31.67 3.77
2119 5119 7.420029 TCAAAGAGGGATAGTACTTCTAGGTT 58.580 38.462 0.00 0.00 31.67 3.50
2120 5120 6.982899 TCAAAGAGGGATAGTACTTCTAGGT 58.017 40.000 0.00 0.00 31.67 3.08
2121 5121 7.899648 TTCAAAGAGGGATAGTACTTCTAGG 57.100 40.000 0.00 0.00 31.67 3.02
2124 5124 8.826765 TGATTTTCAAAGAGGGATAGTACTTCT 58.173 33.333 0.00 0.00 0.00 2.85
2125 5125 9.103861 CTGATTTTCAAAGAGGGATAGTACTTC 57.896 37.037 0.00 0.00 0.00 3.01
2126 5126 8.826765 TCTGATTTTCAAAGAGGGATAGTACTT 58.173 33.333 0.00 0.00 0.00 2.24
2127 5127 8.380742 TCTGATTTTCAAAGAGGGATAGTACT 57.619 34.615 0.00 0.00 0.00 2.73
2130 5130 9.620259 GTTATCTGATTTTCAAAGAGGGATAGT 57.380 33.333 0.00 0.00 0.00 2.12
2131 5131 9.618890 TGTTATCTGATTTTCAAAGAGGGATAG 57.381 33.333 0.00 0.00 0.00 2.08
2132 5132 9.618890 CTGTTATCTGATTTTCAAAGAGGGATA 57.381 33.333 0.00 0.00 0.00 2.59
2133 5133 7.559170 CCTGTTATCTGATTTTCAAAGAGGGAT 59.441 37.037 0.00 0.00 27.63 3.85
2134 5134 6.886459 CCTGTTATCTGATTTTCAAAGAGGGA 59.114 38.462 0.00 0.00 27.63 4.20
2135 5135 6.886459 TCCTGTTATCTGATTTTCAAAGAGGG 59.114 38.462 11.30 0.00 30.49 4.30
2136 5136 7.148171 GGTCCTGTTATCTGATTTTCAAAGAGG 60.148 40.741 6.86 6.86 30.64 3.69
2137 5137 7.391554 TGGTCCTGTTATCTGATTTTCAAAGAG 59.608 37.037 0.00 0.00 0.00 2.85
2138 5138 7.230747 TGGTCCTGTTATCTGATTTTCAAAGA 58.769 34.615 0.00 0.00 0.00 2.52
2139 5139 7.452880 TGGTCCTGTTATCTGATTTTCAAAG 57.547 36.000 0.00 0.00 0.00 2.77
2140 5140 7.831691 TTGGTCCTGTTATCTGATTTTCAAA 57.168 32.000 0.00 0.00 0.00 2.69
2141 5141 8.956426 GTATTGGTCCTGTTATCTGATTTTCAA 58.044 33.333 0.00 0.00 0.00 2.69
2142 5142 7.556275 GGTATTGGTCCTGTTATCTGATTTTCA 59.444 37.037 0.00 0.00 0.00 2.69
2143 5143 7.775561 AGGTATTGGTCCTGTTATCTGATTTTC 59.224 37.037 0.00 0.00 33.62 2.29
2151 5151 9.628500 AATTCTTTAGGTATTGGTCCTGTTATC 57.372 33.333 0.00 0.00 36.60 1.75
2154 5154 6.663523 CCAATTCTTTAGGTATTGGTCCTGTT 59.336 38.462 4.91 0.00 42.06 3.16
2160 5160 4.941713 TGCCCAATTCTTTAGGTATTGGT 58.058 39.130 10.70 0.00 44.33 3.67
2171 5171 2.811410 TCAGCAAGATGCCCAATTCTT 58.189 42.857 0.00 0.00 46.52 2.52
2196 5196 5.524971 TTTCGGACAAGTCTAACTCTTGA 57.475 39.130 11.72 0.00 43.17 3.02
2250 5250 4.216472 GCTGCTAGCTTGGTTATATTTCCC 59.784 45.833 17.23 0.00 38.45 3.97
2270 5270 6.997655 TGATTTACATAGAGGGATAGTGCTG 58.002 40.000 0.00 0.00 0.00 4.41
2322 5466 4.898829 TTCAAGGTTCATCATATTGCCG 57.101 40.909 0.00 0.00 0.00 5.69
2329 5473 6.012745 AGCCTAAACTTTCAAGGTTCATCAT 58.987 36.000 0.00 0.00 37.16 2.45
2345 5489 4.911514 TGGTTCTGAAACAAGCCTAAAC 57.088 40.909 5.50 0.00 37.10 2.01
2357 5501 4.402829 TGATCCCGAAATTTGGTTCTGAA 58.597 39.130 0.00 0.00 0.00 3.02
2387 5531 3.309682 GCTTTGCAACTTCCCAAAAGTTC 59.690 43.478 0.00 0.00 38.32 3.01
2433 5577 7.413438 CGAGGAAGAGAACCTGATAATTTGTTG 60.413 40.741 0.00 0.00 37.93 3.33
2470 5614 6.994496 CCAAGTTCAATAAGGCTGATGAGATA 59.006 38.462 0.00 0.00 0.00 1.98
2485 5629 4.396357 TGATACCCAACCCAAGTTCAAT 57.604 40.909 0.00 0.00 32.45 2.57
2571 5715 5.491982 GGGCCATCGAACATATTAGAAGAT 58.508 41.667 4.39 0.00 0.00 2.40
2604 5748 8.745590 ACCAAACTTGTACATGTCTTTAAACTT 58.254 29.630 14.17 0.99 0.00 2.66
2718 5862 4.579869 TCTGCCCAAAGAGTCTATTTGAC 58.420 43.478 19.25 12.08 45.67 3.18
2732 5876 4.038271 AGATTTGTTGAGATCTGCCCAA 57.962 40.909 0.00 0.00 31.65 4.12
2746 5890 2.936498 GCGTACATGCACCTAGATTTGT 59.064 45.455 0.00 0.00 34.15 2.83
2766 5910 8.504005 TGTGCTAGATTTAGTTCTTTTAGTTGC 58.496 33.333 0.00 0.00 0.00 4.17
2841 5985 9.881649 TTAGAATCGAGTGTTAGTTCTACTAGA 57.118 33.333 0.00 0.00 32.77 2.43
2916 6061 6.035758 GGTTCGATGACAGGTTGAGTTTATAC 59.964 42.308 0.00 0.00 0.00 1.47
2925 6070 5.586243 AGATAATTGGTTCGATGACAGGTTG 59.414 40.000 0.00 0.00 0.00 3.77
2929 6074 5.359756 TCCAGATAATTGGTTCGATGACAG 58.640 41.667 0.00 0.00 39.35 3.51
3021 6166 2.036475 CAGTCCCTCAGGTATTGATCCG 59.964 54.545 0.00 0.00 34.68 4.18
3026 6171 0.839946 CCCCAGTCCCTCAGGTATTG 59.160 60.000 0.00 0.00 0.00 1.90
3038 6183 2.786512 TTTCATGCAGGCCCCCAGTC 62.787 60.000 0.00 0.00 0.00 3.51
3042 6187 0.753111 CTAGTTTCATGCAGGCCCCC 60.753 60.000 0.00 0.00 0.00 5.40
3075 6220 7.118496 ACTCCCATTGAATTTGTTGTTGTTA 57.882 32.000 0.00 0.00 0.00 2.41
3087 6232 2.181975 CCAGGCAAACTCCCATTGAAT 58.818 47.619 0.00 0.00 0.00 2.57
3092 6237 0.540365 CACACCAGGCAAACTCCCAT 60.540 55.000 0.00 0.00 0.00 4.00
3140 6285 8.671921 CAAGATTATTGTTGCTCACATCTAACT 58.328 33.333 0.00 0.00 34.43 2.24
3162 6307 2.267351 CGGCAATGCACCACCAAGA 61.267 57.895 7.79 0.00 0.00 3.02
3195 6340 8.051535 AGATTCAGAAATTCTAGCATCTCCAAA 58.948 33.333 0.00 0.00 0.00 3.28
3237 6382 1.220749 GGACGGAATGCTGCCACTA 59.779 57.895 0.00 0.00 0.00 2.74
3256 6401 0.963962 CTCACCATGCTTGCAAAGGT 59.036 50.000 14.50 14.50 46.35 3.50
3321 6466 0.034337 GGAGTAGCCGTGTTGTTGGA 59.966 55.000 0.00 0.00 0.00 3.53
3368 6513 4.081420 TGTTGCCACACAAACCTTTATTGT 60.081 37.500 0.00 0.00 40.82 2.71
3379 6524 1.608055 CCAGAGATGTTGCCACACAA 58.392 50.000 0.00 0.00 35.03 3.33
3402 6547 2.293122 TGGAGTTGAATCGCAAAGTTGG 59.707 45.455 0.00 0.00 38.44 3.77
3424 6569 0.608856 TTGTGGTGATCGGCTGCAAT 60.609 50.000 0.50 0.00 0.00 3.56
3434 6579 4.553330 AGTATCTTCCGTTTGTGGTGAT 57.447 40.909 0.00 0.00 0.00 3.06
3528 6673 4.807304 TGTGGTTTTCTCTTGTTACGACTC 59.193 41.667 0.00 0.00 0.00 3.36
3657 6802 1.270518 CCTCCCGCTCCAATGATGTAG 60.271 57.143 0.00 0.00 0.00 2.74
3670 6815 0.106149 ACATTTCCGTATCCTCCCGC 59.894 55.000 0.00 0.00 0.00 6.13
3672 6817 3.640029 TGTAGACATTTCCGTATCCTCCC 59.360 47.826 0.00 0.00 0.00 4.30
3684 6829 3.821033 GGAGTTGTGCCTTGTAGACATTT 59.179 43.478 0.00 0.00 0.00 2.32
3738 6883 3.683822 CCAACTCTTCTTCTGTCTGATGC 59.316 47.826 0.00 0.00 0.00 3.91
3870 7015 2.426024 TCCCTGCTGAATGTAGTCGTAC 59.574 50.000 0.00 0.00 0.00 3.67
3902 7047 5.246981 TGTCTCCTCATTTTCCAACATCT 57.753 39.130 0.00 0.00 0.00 2.90
3957 7102 4.406069 CTTGAGCCACATCATTTACAACG 58.594 43.478 0.00 0.00 0.00 4.10
4038 7183 6.714810 AGGTTGCATCAAGTAAGATGTTGTTA 59.285 34.615 5.90 0.00 45.58 2.41
4221 7367 9.765795 GCACATAATAAGACATTAGAGTTAGGT 57.234 33.333 0.00 0.00 0.00 3.08
4467 7623 5.006386 GGAGAAGATTCCAAGCAAGAGAAA 58.994 41.667 0.00 0.00 37.20 2.52
4495 7651 0.478072 TGCCTCATGGTTGGTCTTGT 59.522 50.000 0.00 0.00 35.27 3.16
4500 7656 2.036256 GCCTGCCTCATGGTTGGT 59.964 61.111 0.00 0.00 35.27 3.67
4704 7881 3.132289 CCGTGTGTCATACAGGAGGTAAT 59.868 47.826 0.38 0.00 45.61 1.89
4719 7896 1.623311 TCATCAACTCATCCCGTGTGT 59.377 47.619 0.00 0.00 36.16 3.72
4871 10526 8.147058 AGATTACATTGATGATGAGGTACTGAC 58.853 37.037 0.00 0.00 41.55 3.51
4882 10618 5.296151 ACGTCCCAGATTACATTGATGAT 57.704 39.130 0.00 0.00 0.00 2.45
4947 10683 6.238049 GCAATACGAGATGATGGATCTTATGC 60.238 42.308 0.00 0.00 41.91 3.14
5025 10766 8.689251 TTGATTGTCTATCTTTTCTGTCTACG 57.311 34.615 0.00 0.00 34.17 3.51
5073 10836 4.460382 AGCATCCTGTTGTTTACCAGATTG 59.540 41.667 0.00 0.00 0.00 2.67
5136 10902 7.765695 AACTTCCAATAAAGAGCTGAAATGA 57.234 32.000 0.00 0.00 0.00 2.57
5156 10926 4.655963 ACAGATGACTGCAATGGTAACTT 58.344 39.130 0.00 0.00 46.95 2.66
5214 11014 5.003804 ACTGTATGTTGCCTTACTTTCCTG 58.996 41.667 0.00 0.00 0.00 3.86
5254 11054 5.006165 GCTGTACTATTGCATCAGAGTGAAC 59.994 44.000 2.30 0.00 0.00 3.18
5270 11070 4.222810 AGGACAACATGACATGCTGTACTA 59.777 41.667 27.82 0.00 45.96 1.82
5398 11213 9.541884 TGCCTTCATACACACCTATATATTCTA 57.458 33.333 0.00 0.00 0.00 2.10
5421 11236 2.550606 TGTCCTTTCGTTGTATGTTGCC 59.449 45.455 0.00 0.00 0.00 4.52
5425 11240 6.402118 CGATGAAATGTCCTTTCGTTGTATGT 60.402 38.462 0.00 0.00 45.24 2.29
5426 11241 5.959527 CGATGAAATGTCCTTTCGTTGTATG 59.040 40.000 0.00 0.00 45.24 2.39
5428 11243 5.231702 TCGATGAAATGTCCTTTCGTTGTA 58.768 37.500 8.90 0.00 45.24 2.41
5429 11244 4.062293 TCGATGAAATGTCCTTTCGTTGT 58.938 39.130 8.90 0.00 45.24 3.32
5430 11245 4.661993 TCGATGAAATGTCCTTTCGTTG 57.338 40.909 4.46 4.46 45.24 4.10
5432 11247 5.523916 CCTATTCGATGAAATGTCCTTTCGT 59.476 40.000 0.00 0.00 45.24 3.85
5433 11248 5.523916 ACCTATTCGATGAAATGTCCTTTCG 59.476 40.000 0.00 0.00 45.24 3.46
5434 11249 6.927294 ACCTATTCGATGAAATGTCCTTTC 57.073 37.500 0.00 0.00 43.05 2.62
5435 11250 7.495934 CACTACCTATTCGATGAAATGTCCTTT 59.504 37.037 0.00 0.00 0.00 3.11
5436 11251 6.986817 CACTACCTATTCGATGAAATGTCCTT 59.013 38.462 0.00 0.00 0.00 3.36
5463 11315 1.801242 TGTTCACCTCTCTTCCCACA 58.199 50.000 0.00 0.00 0.00 4.17
5464 11316 2.368875 TCTTGTTCACCTCTCTTCCCAC 59.631 50.000 0.00 0.00 0.00 4.61
5465 11317 2.368875 GTCTTGTTCACCTCTCTTCCCA 59.631 50.000 0.00 0.00 0.00 4.37
5481 11333 4.003788 ACCCCCAGCGACGTCTTG 62.004 66.667 14.70 11.56 0.00 3.02
5531 11390 1.743394 GGGCCACAAAGATTAGTTCCG 59.257 52.381 4.39 0.00 0.00 4.30
5541 11400 0.468029 AGTTGACCAGGGCCACAAAG 60.468 55.000 6.18 0.00 0.00 2.77
5545 11404 0.912486 AGATAGTTGACCAGGGCCAC 59.088 55.000 6.18 0.00 0.00 5.01
5546 11405 1.204146 GAGATAGTTGACCAGGGCCA 58.796 55.000 6.18 0.00 0.00 5.36
5547 11406 0.470341 GGAGATAGTTGACCAGGGCC 59.530 60.000 0.00 0.00 0.00 5.80
5548 11407 1.414550 GAGGAGATAGTTGACCAGGGC 59.585 57.143 0.00 0.00 0.00 5.19
5549 11408 2.043227 GGAGGAGATAGTTGACCAGGG 58.957 57.143 0.00 0.00 0.00 4.45
5550 11409 2.752030 TGGAGGAGATAGTTGACCAGG 58.248 52.381 0.00 0.00 0.00 4.45
5551 11410 4.826274 TTTGGAGGAGATAGTTGACCAG 57.174 45.455 0.00 0.00 0.00 4.00
5552 11411 5.779241 AATTTGGAGGAGATAGTTGACCA 57.221 39.130 0.00 0.00 0.00 4.02
5553 11412 6.659242 TCAAAATTTGGAGGAGATAGTTGACC 59.341 38.462 5.83 0.00 0.00 4.02
5554 11413 7.391833 ACTCAAAATTTGGAGGAGATAGTTGAC 59.608 37.037 23.57 0.00 35.45 3.18
5555 11414 7.461749 ACTCAAAATTTGGAGGAGATAGTTGA 58.538 34.615 23.57 4.26 35.45 3.18
5556 11415 7.609532 AGACTCAAAATTTGGAGGAGATAGTTG 59.390 37.037 23.57 0.05 35.45 3.16
5557 11416 7.694093 AGACTCAAAATTTGGAGGAGATAGTT 58.306 34.615 23.57 3.07 35.45 2.24
5558 11417 7.264294 AGACTCAAAATTTGGAGGAGATAGT 57.736 36.000 23.57 4.55 35.45 2.12
5559 11418 8.046107 AGAAGACTCAAAATTTGGAGGAGATAG 58.954 37.037 23.57 1.47 35.45 2.08
5560 11419 7.922382 AGAAGACTCAAAATTTGGAGGAGATA 58.078 34.615 23.57 0.00 35.45 1.98
5561 11420 6.788218 AGAAGACTCAAAATTTGGAGGAGAT 58.212 36.000 23.57 9.21 35.45 2.75
5562 11421 6.192970 AGAAGACTCAAAATTTGGAGGAGA 57.807 37.500 23.57 1.64 35.45 3.71
5563 11422 5.414144 GGAGAAGACTCAAAATTTGGAGGAG 59.586 44.000 23.57 14.89 44.22 3.69
5564 11423 5.163099 TGGAGAAGACTCAAAATTTGGAGGA 60.163 40.000 23.57 5.05 44.22 3.71
5565 11424 5.072741 TGGAGAAGACTCAAAATTTGGAGG 58.927 41.667 23.57 8.54 44.22 4.30
5566 11425 6.488006 TCTTGGAGAAGACTCAAAATTTGGAG 59.512 38.462 19.28 19.28 44.22 3.86
5567 11426 6.364701 TCTTGGAGAAGACTCAAAATTTGGA 58.635 36.000 5.83 0.00 44.22 3.53
5568 11427 6.639632 TCTTGGAGAAGACTCAAAATTTGG 57.360 37.500 5.83 0.00 44.22 3.28
5569 11428 8.975439 CATTTCTTGGAGAAGACTCAAAATTTG 58.025 33.333 0.00 0.00 44.22 2.32
5586 11445 3.518590 GCTTTGAGCATCCATTTCTTGG 58.481 45.455 0.00 0.00 43.51 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.