Multiple sequence alignment - TraesCS1D01G002500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G002500 chr1D 100.000 7234 0 0 1 7234 583806 576573 0.000000e+00 13359
1 TraesCS1D01G002500 chr1A 93.680 3687 136 39 3125 6773 3389511 3385884 0.000000e+00 5428
2 TraesCS1D01G002500 chr1A 91.381 3214 144 53 1 3122 3392830 3389658 0.000000e+00 4277
3 TraesCS1D01G002500 chr1B 90.201 3735 193 84 3125 6780 4348672 4345032 0.000000e+00 4710
4 TraesCS1D01G002500 chr1B 89.802 3226 174 77 1 3122 4352003 4348829 0.000000e+00 3991
5 TraesCS1D01G002500 chr1B 85.714 210 13 7 6899 7107 4344969 4344776 9.510000e-49 206
6 TraesCS1D01G002500 chr7B 86.792 106 10 2 1249 1350 397594854 397594749 1.650000e-21 115
7 TraesCS1D01G002500 chr4B 86.667 105 10 2 1250 1350 357796436 357796332 5.930000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G002500 chr1D 576573 583806 7233 True 13359.0 13359 100.000000 1 7234 1 chr1D.!!$R1 7233
1 TraesCS1D01G002500 chr1A 3385884 3392830 6946 True 4852.5 5428 92.530500 1 6773 2 chr1A.!!$R1 6772
2 TraesCS1D01G002500 chr1B 4344776 4352003 7227 True 2969.0 4710 88.572333 1 7107 3 chr1B.!!$R1 7106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 754 1.635487 AGCACCCTAAAATCAGGAGCA 59.365 47.619 0.00 0.00 38.34 4.26 F
2274 2437 0.250209 AGAGATGCGGCTATTGCTGG 60.250 55.000 10.04 0.00 45.30 4.85 F
3130 3457 0.104120 TGCGGGTTATGATCTGGACG 59.896 55.000 0.00 0.00 0.00 4.79 F
3688 4017 0.034477 CCACCTGGGACCATTGGTAC 60.034 60.000 9.82 9.82 40.01 3.34 F
4836 5182 0.253327 GGTTTCCTGGTAGCCCTCAG 59.747 60.000 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2564 0.033601 AGACTGGCCACAAACACCAA 60.034 50.0 0.00 0.00 31.81 3.67 R
3324 3651 0.921256 ACAGGCTGGGGCTCCTAATT 60.921 55.0 20.34 0.00 35.88 1.40 R
4923 5269 0.314618 TGCACATTTGTTGCAGCGAT 59.685 45.0 0.00 0.00 33.62 4.58 R
5144 5490 1.181098 AAGCCCGAAAGCAGTGCAAT 61.181 50.0 19.20 4.95 34.23 3.56 R
6827 7236 0.254462 TGAGCACACACCCAACTTCA 59.746 50.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 111 3.088532 TGGGGATCTTTTTGTCCGATTG 58.911 45.455 0.00 0.00 35.28 2.67
103 112 3.245087 TGGGGATCTTTTTGTCCGATTGA 60.245 43.478 0.00 0.00 35.28 2.57
104 113 3.954258 GGGGATCTTTTTGTCCGATTGAT 59.046 43.478 0.00 0.00 35.28 2.57
105 114 4.402474 GGGGATCTTTTTGTCCGATTGATT 59.598 41.667 0.00 0.00 35.28 2.57
169 199 8.567285 AGTTAATAAATTACTCTTGCTGCTGT 57.433 30.769 0.00 0.00 0.00 4.40
179 215 2.613595 TCTTGCTGCTGTTGTTGTACTG 59.386 45.455 0.00 0.00 0.00 2.74
228 265 4.931601 TCAGTTCGAACAAGAAGATGGATG 59.068 41.667 28.78 13.99 0.00 3.51
232 269 4.445453 TCGAACAAGAAGATGGATGGATG 58.555 43.478 0.00 0.00 0.00 3.51
242 279 7.403671 AGAAGATGGATGGATGGATTGATTAG 58.596 38.462 0.00 0.00 0.00 1.73
243 280 6.075949 AGATGGATGGATGGATTGATTAGG 57.924 41.667 0.00 0.00 0.00 2.69
244 281 4.662966 TGGATGGATGGATTGATTAGGG 57.337 45.455 0.00 0.00 0.00 3.53
245 282 4.250329 TGGATGGATGGATTGATTAGGGA 58.750 43.478 0.00 0.00 0.00 4.20
268 318 9.072294 GGGAGATAAATAAAAACAAATGTCGTG 57.928 33.333 0.00 0.00 0.00 4.35
311 361 3.653836 TGAAAGCCCTAGAAAGTACCCAA 59.346 43.478 0.00 0.00 0.00 4.12
456 524 2.225369 CCATTCCCACCTTTTTCTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
463 531 3.245407 CCACCTTTTTCTCCCTGGATTCT 60.245 47.826 0.00 0.00 0.00 2.40
637 729 5.049267 TCACACGGTTTCTAAAATTAGCACC 60.049 40.000 9.63 9.63 33.68 5.01
651 753 2.426842 AGCACCCTAAAATCAGGAGC 57.573 50.000 0.00 0.00 38.00 4.70
652 754 1.635487 AGCACCCTAAAATCAGGAGCA 59.365 47.619 0.00 0.00 38.34 4.26
671 774 7.122650 CAGGAGCATTTTCACCTTAAATTAGGA 59.877 37.037 1.07 0.00 38.73 2.94
680 783 9.919416 TTTCACCTTAAATTAGGATGATGATGA 57.081 29.630 1.07 0.00 38.73 2.92
682 785 9.511272 TCACCTTAAATTAGGATGATGATGATG 57.489 33.333 1.07 0.00 38.73 3.07
683 786 9.511272 CACCTTAAATTAGGATGATGATGATGA 57.489 33.333 1.07 0.00 38.73 2.92
684 787 9.736414 ACCTTAAATTAGGATGATGATGATGAG 57.264 33.333 1.07 0.00 38.73 2.90
686 789 8.571461 TTAAATTAGGATGATGATGATGAGCC 57.429 34.615 0.00 0.00 0.00 4.70
687 790 4.564782 TTAGGATGATGATGATGAGCCC 57.435 45.455 0.00 0.00 0.00 5.19
689 792 2.306219 AGGATGATGATGATGAGCCCAG 59.694 50.000 0.00 0.00 0.00 4.45
691 794 2.924757 TGATGATGATGAGCCCAGAC 57.075 50.000 0.00 0.00 0.00 3.51
692 795 2.405559 TGATGATGATGAGCCCAGACT 58.594 47.619 0.00 0.00 0.00 3.24
693 796 3.580039 TGATGATGATGAGCCCAGACTA 58.420 45.455 0.00 0.00 0.00 2.59
694 797 3.969312 TGATGATGATGAGCCCAGACTAA 59.031 43.478 0.00 0.00 0.00 2.24
695 798 4.596212 TGATGATGATGAGCCCAGACTAAT 59.404 41.667 0.00 0.00 0.00 1.73
696 799 5.781818 TGATGATGATGAGCCCAGACTAATA 59.218 40.000 0.00 0.00 0.00 0.98
697 800 6.270695 TGATGATGATGAGCCCAGACTAATAA 59.729 38.462 0.00 0.00 0.00 1.40
698 801 6.499106 TGATGATGAGCCCAGACTAATAAA 57.501 37.500 0.00 0.00 0.00 1.40
699 802 6.899089 TGATGATGAGCCCAGACTAATAAAA 58.101 36.000 0.00 0.00 0.00 1.52
700 803 6.767902 TGATGATGAGCCCAGACTAATAAAAC 59.232 38.462 0.00 0.00 0.00 2.43
701 804 6.313519 TGATGAGCCCAGACTAATAAAACT 57.686 37.500 0.00 0.00 0.00 2.66
703 806 4.755411 TGAGCCCAGACTAATAAAACTCG 58.245 43.478 0.00 0.00 0.00 4.18
721 824 8.716646 AAAACTCGGTTTCTTGAATTTTGATT 57.283 26.923 3.06 0.00 34.43 2.57
723 826 9.810545 AAACTCGGTTTCTTGAATTTTGATTTA 57.189 25.926 0.00 0.00 28.86 1.40
749 852 7.539712 TCTGTGTCTTCTCTTTTTGTTAGTG 57.460 36.000 0.00 0.00 0.00 2.74
758 861 4.367450 TCTTTTTGTTAGTGGTGCATTGC 58.633 39.130 0.46 0.46 0.00 3.56
932 1044 5.183904 GCCTTGTTGTCCACTAATTGATTCT 59.816 40.000 0.00 0.00 0.00 2.40
1072 1191 3.374402 CACCGCCAGACTCGACCT 61.374 66.667 0.00 0.00 0.00 3.85
1073 1192 3.063084 ACCGCCAGACTCGACCTC 61.063 66.667 0.00 0.00 0.00 3.85
1074 1193 4.180946 CCGCCAGACTCGACCTCG 62.181 72.222 0.00 0.00 41.45 4.63
1114 1236 1.185618 TCTTGTCCCCACAGAGGTCG 61.186 60.000 0.00 0.00 32.71 4.79
1159 1283 4.335416 AGAGATAGAGATAGAGCCTGTGC 58.665 47.826 0.00 0.00 37.95 4.57
1170 1294 1.006922 GCCTGTGCTTGGTTTCTGC 60.007 57.895 0.00 0.00 33.53 4.26
1412 1565 2.237143 TCCTCTTCTCAATTCATGCCGT 59.763 45.455 0.00 0.00 0.00 5.68
1424 1577 3.222173 TCATGCCGTGGCCTAAATAAT 57.778 42.857 8.69 0.00 41.09 1.28
1452 1605 1.230324 GTTCTCCTTCGTGCTTGCTT 58.770 50.000 0.00 0.00 0.00 3.91
1512 1666 6.690530 TGCTCCAATAAAATTCCACTGAAAG 58.309 36.000 0.00 0.00 42.29 2.62
1658 1813 3.604582 GCCAGTTCTTTGTAGCTGATCT 58.395 45.455 0.00 0.00 0.00 2.75
1697 1852 3.444742 CCAGAAATTAGGCTGTTGCATCA 59.555 43.478 0.00 0.00 41.91 3.07
1698 1853 4.439700 CCAGAAATTAGGCTGTTGCATCAG 60.440 45.833 18.61 18.61 41.91 2.90
1701 1856 5.244626 AGAAATTAGGCTGTTGCATCAGTTT 59.755 36.000 22.50 15.38 41.91 2.66
1714 1869 5.108517 TGCATCAGTTTGGTTCAGTTTTTC 58.891 37.500 0.00 0.00 0.00 2.29
1828 1991 3.853330 CAGTGGTGCGATTCGGCG 61.853 66.667 8.34 0.00 35.06 6.46
1844 2007 2.757124 GCGGGGAATGAGTGGGGAT 61.757 63.158 0.00 0.00 0.00 3.85
1953 2116 6.520792 GCAATTAAATGCCATGATCAACTC 57.479 37.500 4.02 0.00 40.49 3.01
2085 2248 3.452474 CACTTGAGAAGATCCATCCGAC 58.548 50.000 0.00 0.00 0.00 4.79
2105 2268 2.272146 GGGCGAATCCTGAAGGCA 59.728 61.111 0.00 0.00 34.44 4.75
2212 2375 3.925090 CCGTCGGTATCCTGGGGC 61.925 72.222 2.08 0.00 0.00 5.80
2260 2423 3.988976 TTTGGCTTGTCTGCTAGAGAT 57.011 42.857 0.00 0.00 31.63 2.75
2274 2437 0.250209 AGAGATGCGGCTATTGCTGG 60.250 55.000 10.04 0.00 45.30 4.85
2325 2492 6.974932 TTGCTCTCAGCTATTACTTCTTTG 57.025 37.500 0.00 0.00 42.97 2.77
2361 2528 5.563592 TCTTCTTCTTTGCCTTGATGATCA 58.436 37.500 0.00 0.00 0.00 2.92
2397 2564 1.242076 GCAGCGAGAATAATGGCCAT 58.758 50.000 14.09 14.09 0.00 4.40
2440 2607 5.105187 TGCTGATACACTTAGCTTCATCTGT 60.105 40.000 0.00 0.00 38.25 3.41
2455 2622 1.198713 TCTGTGAGGGAGATGAAGCC 58.801 55.000 0.00 0.00 0.00 4.35
2650 2817 6.819284 TGATGATTCCATTTCCATTAAAGGC 58.181 36.000 0.00 0.00 32.09 4.35
2743 2910 6.473455 CCAGAACTCTTTTTGTCACAAACATC 59.527 38.462 1.28 0.00 37.82 3.06
2838 3007 9.885743 CTTCTTGAAAGTTCGTTTATTTTGTTG 57.114 29.630 0.00 0.00 0.00 3.33
3109 3282 5.913137 TCAATTTCCGCCTTTGATGTTAT 57.087 34.783 0.00 0.00 0.00 1.89
3114 3287 1.531677 CCGCCTTTGATGTTATGTGCG 60.532 52.381 0.00 0.00 40.38 5.34
3122 3295 4.143986 TGATGTTATGTGCGGGTTATGA 57.856 40.909 0.00 0.00 0.00 2.15
3123 3296 4.713553 TGATGTTATGTGCGGGTTATGAT 58.286 39.130 0.00 0.00 0.00 2.45
3130 3457 0.104120 TGCGGGTTATGATCTGGACG 59.896 55.000 0.00 0.00 0.00 4.79
3156 3483 9.410556 GTCTATACAAATGTTTTGATGCTGTTT 57.589 29.630 6.96 0.00 0.00 2.83
3209 3536 5.483231 TCAGATAAGGATATCAGCAAGGGAG 59.517 44.000 4.83 0.00 40.41 4.30
3232 3559 3.755112 TTGGTGGTGTCTAACATCGAA 57.245 42.857 0.00 0.00 30.05 3.71
3305 3632 5.416271 TGTGAAGGAGGTAATGGTACTTC 57.584 43.478 0.00 0.00 35.98 3.01
3324 3651 7.546316 GGTACTTCCAAACTTTGCTTTGTAAAA 59.454 33.333 0.00 0.00 35.97 1.52
3338 3665 5.624509 GCTTTGTAAAAATTAGGAGCCCCAG 60.625 44.000 0.00 0.00 33.88 4.45
3534 3861 6.038050 ACAATTTTTGGGTAATTTGTGCTGTG 59.962 34.615 0.00 0.00 33.05 3.66
3563 3890 2.546789 GCCTTTATTCGTACGGGATTGG 59.453 50.000 16.52 11.78 0.00 3.16
3571 3898 2.294233 TCGTACGGGATTGGTATAGTGC 59.706 50.000 16.52 0.00 0.00 4.40
3585 3914 6.675565 TGGTATAGTGCGGGGATCTAATATA 58.324 40.000 0.00 0.00 0.00 0.86
3611 3940 2.828520 CTCTGTTCCTACCAGCTTGAGA 59.171 50.000 0.00 0.00 0.00 3.27
3679 4008 1.353091 AGAAACTCTCCACCTGGGAC 58.647 55.000 0.00 0.00 42.15 4.46
3688 4017 0.034477 CCACCTGGGACCATTGGTAC 60.034 60.000 9.82 9.82 40.01 3.34
3700 4029 5.010314 GGACCATTGGTACGATACATGACTA 59.990 44.000 8.70 0.00 35.25 2.59
3703 4032 6.759827 ACCATTGGTACGATACATGACTAAAC 59.240 38.462 6.54 0.00 32.11 2.01
3704 4033 6.074516 CCATTGGTACGATACATGACTAAACG 60.075 42.308 0.00 0.00 0.00 3.60
3705 4034 5.565592 TGGTACGATACATGACTAAACGT 57.434 39.130 0.00 5.18 36.52 3.99
3706 4035 6.676237 TGGTACGATACATGACTAAACGTA 57.324 37.500 0.00 4.23 34.52 3.57
3707 4036 7.263100 TGGTACGATACATGACTAAACGTAT 57.737 36.000 0.00 0.00 37.17 3.06
3708 4037 7.706159 TGGTACGATACATGACTAAACGTATT 58.294 34.615 0.00 0.00 37.17 1.89
3709 4038 8.190122 TGGTACGATACATGACTAAACGTATTT 58.810 33.333 0.00 0.00 37.17 1.40
3710 4039 8.474577 GGTACGATACATGACTAAACGTATTTG 58.525 37.037 0.00 0.00 37.17 2.32
3711 4040 9.013490 GTACGATACATGACTAAACGTATTTGT 57.987 33.333 0.00 0.00 37.17 2.83
3758 4088 9.766277 TTTCATTTTGTCTAAACATTTTGCAAC 57.234 25.926 0.00 0.00 34.73 4.17
3759 4089 8.484641 TCATTTTGTCTAAACATTTTGCAACA 57.515 26.923 0.00 0.00 34.73 3.33
3760 4090 9.107177 TCATTTTGTCTAAACATTTTGCAACAT 57.893 25.926 0.00 0.00 34.73 2.71
3761 4091 9.719279 CATTTTGTCTAAACATTTTGCAACATT 57.281 25.926 0.00 0.00 34.73 2.71
3771 4101 5.163364 ACATTTTGCAACATTACCTTGGACA 60.163 36.000 0.00 0.00 0.00 4.02
3791 4121 0.984230 TGTCAAACAGGAGGCCCTAG 59.016 55.000 0.00 0.00 42.02 3.02
3803 4133 2.627699 GAGGCCCTAGAAGTCATGAGAG 59.372 54.545 0.00 0.00 0.00 3.20
3810 4140 1.066286 AGAAGTCATGAGAGCAGCACC 60.066 52.381 0.00 0.00 0.00 5.01
3856 4186 4.422073 AGTCCGCAATTGGATAGATCAA 57.578 40.909 7.72 0.00 40.91 2.57
3933 4263 4.748277 ACCTACACGCCAGTACAATAAT 57.252 40.909 0.00 0.00 0.00 1.28
3975 4305 2.464459 CGGATCGCTTGGTCAAGGC 61.464 63.158 12.02 4.50 38.80 4.35
4024 4354 2.737180 CACACTCACTGCCGGAGT 59.263 61.111 5.05 2.62 46.11 3.85
4025 4355 1.373497 CACACTCACTGCCGGAGTC 60.373 63.158 5.05 0.00 43.47 3.36
4032 4362 1.347707 TCACTGCCGGAGTCTCAAAAT 59.652 47.619 5.05 0.00 29.75 1.82
4044 4374 7.241376 CGGAGTCTCAAAATGGTATTTGTAAC 58.759 38.462 1.47 0.00 40.40 2.50
4190 4520 0.803117 GGTAAAACTCCTCGGCTTGC 59.197 55.000 0.00 0.00 0.00 4.01
4195 4525 3.123620 CTCCTCGGCTTGCACTGC 61.124 66.667 2.51 2.51 0.00 4.40
4221 4551 6.633500 TTCATTGTCTCCTGTAAACCTTTG 57.367 37.500 0.00 0.00 0.00 2.77
4251 4581 5.047802 ACCTGTTCAGCATGGATTTGTAAAG 60.048 40.000 0.00 0.00 36.16 1.85
4267 4597 6.887376 TTGTAAAGTCGCTGCTTTCTATAG 57.113 37.500 5.78 0.00 39.22 1.31
4324 4654 8.907829 TTCATCTATTCCATAGGCTTCTAGAT 57.092 34.615 0.00 0.00 33.64 1.98
4734 5080 4.897509 TGGTGCTTATCCTATGGATCAG 57.102 45.455 1.98 3.14 42.11 2.90
4806 5152 2.836981 CTCTGTTCATCCAGGGTCTCTT 59.163 50.000 0.00 0.00 33.14 2.85
4836 5182 0.253327 GGTTTCCTGGTAGCCCTCAG 59.747 60.000 0.00 0.00 0.00 3.35
4923 5269 2.361104 GTTGGCGCTGGATTCCCA 60.361 61.111 7.64 0.00 40.95 4.37
4954 5300 4.127907 ACAAATGTGCAATGCAATGAACA 58.872 34.783 17.95 17.95 42.94 3.18
5004 5350 5.107182 CGCTTCCTATGATGCTACAAATGAG 60.107 44.000 4.75 0.00 39.00 2.90
5092 5438 2.848302 GACATTGAACGCATAGCAAAGC 59.152 45.455 0.00 0.00 0.00 3.51
5144 5490 7.789273 TCAAAAACATTCCTAACAAGTACGA 57.211 32.000 0.00 0.00 0.00 3.43
5158 5504 1.726791 AGTACGATTGCACTGCTTTCG 59.273 47.619 18.59 18.59 38.68 3.46
5522 5876 7.042389 GCAACTTGTAAGAGCTATATCCTGTTC 60.042 40.741 0.00 0.00 0.00 3.18
5563 5922 9.525409 CATTTGAAGAGAAAAACTTGACATCTT 57.475 29.630 0.00 0.00 0.00 2.40
5697 6057 4.931601 GGCAAGAGATGGGAAAAATTCAAC 59.068 41.667 0.00 0.00 0.00 3.18
5848 6208 1.972660 GAACGCAGGGGAGCAGGTAT 61.973 60.000 0.00 0.00 0.00 2.73
5866 6245 6.818644 GCAGGTATGAGTTCATTTCTGTAGAA 59.181 38.462 17.53 0.00 37.42 2.10
5870 6249 7.819900 GGTATGAGTTCATTTCTGTAGAACAGT 59.180 37.037 6.93 0.00 43.00 3.55
5872 6251 7.715265 TGAGTTCATTTCTGTAGAACAGTTC 57.285 36.000 5.00 5.00 46.03 3.01
5873 6252 7.272244 TGAGTTCATTTCTGTAGAACAGTTCA 58.728 34.615 15.85 0.00 46.03 3.18
5875 6254 7.275920 AGTTCATTTCTGTAGAACAGTTCAGT 58.724 34.615 15.85 0.00 46.03 3.41
5911 6293 2.159707 CCATACTGGTTTTCTTGTCGCG 60.160 50.000 0.00 0.00 31.35 5.87
5914 6296 2.218603 ACTGGTTTTCTTGTCGCGAAT 58.781 42.857 12.06 0.00 0.00 3.34
5915 6297 2.032030 ACTGGTTTTCTTGTCGCGAATG 60.032 45.455 12.06 3.88 0.00 2.67
5919 6301 2.979813 GTTTTCTTGTCGCGAATGCATT 59.020 40.909 12.06 12.83 42.97 3.56
5921 6303 0.179192 TCTTGTCGCGAATGCATTGC 60.179 50.000 18.59 18.38 42.97 3.56
5949 6337 9.229784 CAATTTCATAGATCTGTTTATGTGTGC 57.770 33.333 5.18 0.00 0.00 4.57
5976 6368 6.636705 TCACAGTAGTCAGTTAAACACTTGT 58.363 36.000 0.00 0.00 30.92 3.16
5978 6370 7.703621 TCACAGTAGTCAGTTAAACACTTGTAC 59.296 37.037 0.00 0.00 30.92 2.90
5983 6375 7.859325 AGTCAGTTAAACACTTGTACATGTT 57.141 32.000 11.46 10.00 40.76 2.71
5995 6392 9.944376 ACACTTGTACATGTTCTAACAATATCT 57.056 29.630 11.46 0.00 43.03 1.98
6019 6416 2.557924 TGATGATGCAAAGTGGTTGACC 59.442 45.455 0.00 0.00 39.87 4.02
6043 6440 8.525290 CCTGGAGGTTTATTCATGTTTCTATT 57.475 34.615 0.00 0.00 0.00 1.73
6044 6441 8.971073 CCTGGAGGTTTATTCATGTTTCTATTT 58.029 33.333 0.00 0.00 0.00 1.40
6263 6666 3.437049 ACGGAGAAGAAGCTGCAATAAAC 59.563 43.478 1.02 0.00 0.00 2.01
6412 6817 2.594119 CTAGAGTTCGGACGGGTGCG 62.594 65.000 6.37 6.37 45.95 5.34
6428 6833 4.194720 CGAGGAGGGACGGCGAAG 62.195 72.222 16.62 0.00 0.00 3.79
6512 6918 0.251297 TGGAGGGGTGTTGAATGCTG 60.251 55.000 0.00 0.00 0.00 4.41
6523 6929 2.681848 GTTGAATGCTGATCTGACCTGG 59.318 50.000 3.42 0.00 0.00 4.45
6602 7009 0.886043 GCTGTGTGTGAGTGCCATGA 60.886 55.000 0.00 0.00 0.00 3.07
6633 7041 6.988580 TGTCTAAATGCTTCTACTGATCATGG 59.011 38.462 0.00 0.00 0.00 3.66
6670 7079 1.203052 CATGAACACTGATGCAACCCC 59.797 52.381 0.00 0.00 0.00 4.95
6671 7080 0.478072 TGAACACTGATGCAACCCCT 59.522 50.000 0.00 0.00 0.00 4.79
6672 7081 1.702401 TGAACACTGATGCAACCCCTA 59.298 47.619 0.00 0.00 0.00 3.53
6673 7082 2.308570 TGAACACTGATGCAACCCCTAT 59.691 45.455 0.00 0.00 0.00 2.57
6674 7083 3.521531 TGAACACTGATGCAACCCCTATA 59.478 43.478 0.00 0.00 0.00 1.31
6677 7086 2.105477 CACTGATGCAACCCCTATAGCT 59.895 50.000 0.00 0.00 0.00 3.32
6678 7087 3.324846 CACTGATGCAACCCCTATAGCTA 59.675 47.826 0.00 0.00 0.00 3.32
6688 7097 2.224450 CCCCTATAGCTACCCCAAAACG 60.224 54.545 0.00 0.00 0.00 3.60
6780 7189 4.522789 AGAACTTCAAATATTTGCCGGTGT 59.477 37.500 21.15 10.03 38.05 4.16
6781 7190 4.173036 ACTTCAAATATTTGCCGGTGTG 57.827 40.909 21.15 9.29 38.05 3.82
6784 7193 3.417101 TCAAATATTTGCCGGTGTGTCT 58.583 40.909 21.15 0.00 38.05 3.41
6785 7194 3.823873 TCAAATATTTGCCGGTGTGTCTT 59.176 39.130 21.15 0.00 38.05 3.01
6786 7195 4.279671 TCAAATATTTGCCGGTGTGTCTTT 59.720 37.500 21.15 0.00 38.05 2.52
6787 7196 3.848272 ATATTTGCCGGTGTGTCTTTG 57.152 42.857 1.90 0.00 0.00 2.77
6788 7197 1.398692 ATTTGCCGGTGTGTCTTTGT 58.601 45.000 1.90 0.00 0.00 2.83
6789 7198 2.039818 TTTGCCGGTGTGTCTTTGTA 57.960 45.000 1.90 0.00 0.00 2.41
6790 7199 2.264005 TTGCCGGTGTGTCTTTGTAT 57.736 45.000 1.90 0.00 0.00 2.29
6791 7200 1.518325 TGCCGGTGTGTCTTTGTATG 58.482 50.000 1.90 0.00 0.00 2.39
6792 7201 0.802494 GCCGGTGTGTCTTTGTATGG 59.198 55.000 1.90 0.00 0.00 2.74
6793 7202 1.880646 GCCGGTGTGTCTTTGTATGGT 60.881 52.381 1.90 0.00 0.00 3.55
6794 7203 2.500229 CCGGTGTGTCTTTGTATGGTT 58.500 47.619 0.00 0.00 0.00 3.67
6795 7204 3.666274 CCGGTGTGTCTTTGTATGGTTA 58.334 45.455 0.00 0.00 0.00 2.85
6796 7205 4.066490 CCGGTGTGTCTTTGTATGGTTAA 58.934 43.478 0.00 0.00 0.00 2.01
6797 7206 4.153475 CCGGTGTGTCTTTGTATGGTTAAG 59.847 45.833 0.00 0.00 0.00 1.85
6798 7207 4.753107 CGGTGTGTCTTTGTATGGTTAAGT 59.247 41.667 0.00 0.00 0.00 2.24
6799 7208 5.927689 CGGTGTGTCTTTGTATGGTTAAGTA 59.072 40.000 0.00 0.00 0.00 2.24
6800 7209 6.592607 CGGTGTGTCTTTGTATGGTTAAGTAT 59.407 38.462 0.00 0.00 0.00 2.12
6801 7210 7.412563 CGGTGTGTCTTTGTATGGTTAAGTATG 60.413 40.741 0.00 0.00 0.00 2.39
6802 7211 7.389607 GGTGTGTCTTTGTATGGTTAAGTATGT 59.610 37.037 0.00 0.00 0.00 2.29
6803 7212 8.780249 GTGTGTCTTTGTATGGTTAAGTATGTT 58.220 33.333 0.00 0.00 0.00 2.71
6804 7213 8.779303 TGTGTCTTTGTATGGTTAAGTATGTTG 58.221 33.333 0.00 0.00 0.00 3.33
6805 7214 8.234546 GTGTCTTTGTATGGTTAAGTATGTTGG 58.765 37.037 0.00 0.00 0.00 3.77
6806 7215 7.940137 TGTCTTTGTATGGTTAAGTATGTTGGT 59.060 33.333 0.00 0.00 0.00 3.67
6807 7216 8.789762 GTCTTTGTATGGTTAAGTATGTTGGTT 58.210 33.333 0.00 0.00 0.00 3.67
6808 7217 8.788806 TCTTTGTATGGTTAAGTATGTTGGTTG 58.211 33.333 0.00 0.00 0.00 3.77
6809 7218 8.466617 TTTGTATGGTTAAGTATGTTGGTTGT 57.533 30.769 0.00 0.00 0.00 3.32
6810 7219 7.441890 TGTATGGTTAAGTATGTTGGTTGTG 57.558 36.000 0.00 0.00 0.00 3.33
6811 7220 6.999272 TGTATGGTTAAGTATGTTGGTTGTGT 59.001 34.615 0.00 0.00 0.00 3.72
6812 7221 5.759506 TGGTTAAGTATGTTGGTTGTGTG 57.240 39.130 0.00 0.00 0.00 3.82
6813 7222 4.036971 TGGTTAAGTATGTTGGTTGTGTGC 59.963 41.667 0.00 0.00 0.00 4.57
6814 7223 4.036971 GGTTAAGTATGTTGGTTGTGTGCA 59.963 41.667 0.00 0.00 0.00 4.57
6815 7224 5.278758 GGTTAAGTATGTTGGTTGTGTGCAT 60.279 40.000 0.00 0.00 0.00 3.96
6816 7225 4.503741 AAGTATGTTGGTTGTGTGCATC 57.496 40.909 0.00 0.00 0.00 3.91
6817 7226 2.819608 AGTATGTTGGTTGTGTGCATCC 59.180 45.455 0.00 0.00 35.54 3.51
6818 7227 1.999648 ATGTTGGTTGTGTGCATCCT 58.000 45.000 0.00 0.00 35.89 3.24
6819 7228 2.647683 TGTTGGTTGTGTGCATCCTA 57.352 45.000 0.00 0.00 35.89 2.94
6820 7229 2.937519 TGTTGGTTGTGTGCATCCTAA 58.062 42.857 0.00 0.00 35.89 2.69
6821 7230 2.621055 TGTTGGTTGTGTGCATCCTAAC 59.379 45.455 0.00 0.00 35.89 2.34
6822 7231 2.884639 GTTGGTTGTGTGCATCCTAACT 59.115 45.455 0.00 0.00 35.89 2.24
6823 7232 4.069304 GTTGGTTGTGTGCATCCTAACTA 58.931 43.478 0.00 0.00 35.89 2.24
6824 7233 4.568072 TGGTTGTGTGCATCCTAACTAT 57.432 40.909 0.00 0.00 35.89 2.12
6825 7234 4.260985 TGGTTGTGTGCATCCTAACTATG 58.739 43.478 0.00 0.00 35.89 2.23
6826 7235 4.019771 TGGTTGTGTGCATCCTAACTATGA 60.020 41.667 0.00 0.00 35.89 2.15
6827 7236 5.126067 GGTTGTGTGCATCCTAACTATGAT 58.874 41.667 0.00 0.00 32.94 2.45
6828 7237 5.008019 GGTTGTGTGCATCCTAACTATGATG 59.992 44.000 0.00 0.00 41.02 3.07
6829 7238 5.612725 TGTGTGCATCCTAACTATGATGA 57.387 39.130 3.80 0.00 40.64 2.92
6830 7239 5.988287 TGTGTGCATCCTAACTATGATGAA 58.012 37.500 3.80 0.00 40.64 2.57
6831 7240 6.051074 TGTGTGCATCCTAACTATGATGAAG 58.949 40.000 3.80 0.00 40.64 3.02
6832 7241 6.051717 GTGTGCATCCTAACTATGATGAAGT 58.948 40.000 3.80 0.00 40.64 3.01
6833 7242 6.540189 GTGTGCATCCTAACTATGATGAAGTT 59.460 38.462 3.80 0.00 40.64 2.66
6834 7243 6.539826 TGTGCATCCTAACTATGATGAAGTTG 59.460 38.462 3.80 0.00 40.64 3.16
6835 7244 6.017605 GTGCATCCTAACTATGATGAAGTTGG 60.018 42.308 3.80 0.00 40.64 3.77
6839 7248 5.745227 CCTAACTATGATGAAGTTGGGTGT 58.255 41.667 9.48 0.00 45.56 4.16
6840 7249 5.586243 CCTAACTATGATGAAGTTGGGTGTG 59.414 44.000 9.48 0.00 45.56 3.82
6841 7250 4.640771 ACTATGATGAAGTTGGGTGTGT 57.359 40.909 0.00 0.00 0.00 3.72
6842 7251 4.326826 ACTATGATGAAGTTGGGTGTGTG 58.673 43.478 0.00 0.00 0.00 3.82
6843 7252 1.317613 TGATGAAGTTGGGTGTGTGC 58.682 50.000 0.00 0.00 0.00 4.57
6844 7253 1.133823 TGATGAAGTTGGGTGTGTGCT 60.134 47.619 0.00 0.00 0.00 4.40
6845 7254 1.537202 GATGAAGTTGGGTGTGTGCTC 59.463 52.381 0.00 0.00 0.00 4.26
6846 7255 0.254462 TGAAGTTGGGTGTGTGCTCA 59.746 50.000 0.00 0.00 0.00 4.26
6847 7256 1.133823 TGAAGTTGGGTGTGTGCTCAT 60.134 47.619 0.00 0.00 0.00 2.90
6848 7257 1.537202 GAAGTTGGGTGTGTGCTCATC 59.463 52.381 0.00 0.00 0.00 2.92
6849 7258 0.603707 AGTTGGGTGTGTGCTCATCG 60.604 55.000 0.00 0.00 0.00 3.84
6850 7259 0.884704 GTTGGGTGTGTGCTCATCGT 60.885 55.000 0.00 0.00 0.00 3.73
6851 7260 0.884259 TTGGGTGTGTGCTCATCGTG 60.884 55.000 0.00 0.00 0.00 4.35
6852 7261 1.301716 GGGTGTGTGCTCATCGTGT 60.302 57.895 0.00 0.00 0.00 4.49
6853 7262 1.568612 GGGTGTGTGCTCATCGTGTG 61.569 60.000 0.00 0.00 0.00 3.82
6854 7263 0.880278 GGTGTGTGCTCATCGTGTGT 60.880 55.000 0.00 0.00 0.00 3.72
6855 7264 1.604438 GGTGTGTGCTCATCGTGTGTA 60.604 52.381 0.00 0.00 0.00 2.90
6856 7265 2.337583 GTGTGTGCTCATCGTGTGTAT 58.662 47.619 0.00 0.00 0.00 2.29
6857 7266 2.736721 GTGTGTGCTCATCGTGTGTATT 59.263 45.455 0.00 0.00 0.00 1.89
6858 7267 2.993220 TGTGTGCTCATCGTGTGTATTC 59.007 45.455 0.00 0.00 0.00 1.75
6859 7268 3.254060 GTGTGCTCATCGTGTGTATTCT 58.746 45.455 0.00 0.00 0.00 2.40
6860 7269 3.304559 GTGTGCTCATCGTGTGTATTCTC 59.695 47.826 0.00 0.00 0.00 2.87
6861 7270 3.193479 TGTGCTCATCGTGTGTATTCTCT 59.807 43.478 0.00 0.00 0.00 3.10
6862 7271 3.794028 GTGCTCATCGTGTGTATTCTCTC 59.206 47.826 0.00 0.00 0.00 3.20
6863 7272 3.039405 GCTCATCGTGTGTATTCTCTCG 58.961 50.000 0.00 0.00 0.00 4.04
6864 7273 3.242772 GCTCATCGTGTGTATTCTCTCGA 60.243 47.826 2.00 2.00 37.43 4.04
6865 7274 4.555708 GCTCATCGTGTGTATTCTCTCGAT 60.556 45.833 5.80 5.80 41.22 3.59
6867 7276 3.066369 TCGTGTGTATTCTCTCGATGC 57.934 47.619 0.00 0.00 31.51 3.91
6868 7277 2.683362 TCGTGTGTATTCTCTCGATGCT 59.317 45.455 0.00 0.00 31.51 3.79
6869 7278 3.128764 TCGTGTGTATTCTCTCGATGCTT 59.871 43.478 0.00 0.00 31.51 3.91
6870 7279 3.859961 CGTGTGTATTCTCTCGATGCTTT 59.140 43.478 0.00 0.00 0.00 3.51
6879 7288 5.725110 TCTCTCGATGCTTTATTTTGAGC 57.275 39.130 0.00 0.00 39.33 4.26
6941 7381 8.453498 TTTACCCTAGTATTTCCCTTACAGTT 57.547 34.615 0.00 0.00 0.00 3.16
6969 7409 6.395780 TGGTAACTTTTGGGATGAGGAATA 57.604 37.500 0.00 0.00 37.61 1.75
6980 7420 7.895144 TGGGATGAGGAATAGGAATTTAGAT 57.105 36.000 0.00 0.00 0.00 1.98
6984 7424 8.046107 GGATGAGGAATAGGAATTTAGATGAGG 58.954 40.741 0.00 0.00 0.00 3.86
6994 7434 8.107196 AGGAATTTAGATGAGGGAGTTGTAAT 57.893 34.615 0.00 0.00 0.00 1.89
6995 7435 7.995488 AGGAATTTAGATGAGGGAGTTGTAATG 59.005 37.037 0.00 0.00 0.00 1.90
7013 7453 9.994432 GTTGTAATGGAGATTAGACATGAAAAG 57.006 33.333 0.00 0.00 0.00 2.27
7029 7469 9.921637 GACATGAAAAGTGTAATTTTATTCCCA 57.078 29.630 0.00 0.00 32.62 4.37
7033 7473 9.936759 TGAAAAGTGTAATTTTATTCCCAATCC 57.063 29.630 0.00 0.00 32.62 3.01
7034 7474 9.378551 GAAAAGTGTAATTTTATTCCCAATCCC 57.621 33.333 0.00 0.00 32.62 3.85
7035 7475 8.442660 AAAGTGTAATTTTATTCCCAATCCCA 57.557 30.769 0.00 0.00 0.00 4.37
7036 7476 8.622572 AAGTGTAATTTTATTCCCAATCCCAT 57.377 30.769 0.00 0.00 0.00 4.00
7042 7482 6.942163 TTTTATTCCCAATCCCATGTTTGA 57.058 33.333 0.00 0.00 0.00 2.69
7053 7493 8.205512 CCAATCCCATGTTTGATATTTGATGAA 58.794 33.333 0.00 0.00 0.00 2.57
7067 7507 9.214957 GATATTTGATGAATATTACACGTGGGA 57.785 33.333 21.57 8.11 40.26 4.37
7076 7516 6.920569 ATATTACACGTGGGAATTTGAGAC 57.079 37.500 21.57 0.00 0.00 3.36
7079 7519 0.682852 ACGTGGGAATTTGAGACGGA 59.317 50.000 0.00 0.00 34.36 4.69
7083 7523 3.610911 GTGGGAATTTGAGACGGATCTT 58.389 45.455 0.00 0.00 34.34 2.40
7085 7525 5.183228 GTGGGAATTTGAGACGGATCTTTA 58.817 41.667 0.00 0.00 34.34 1.85
7107 7547 1.777878 TCCCTTGTTTGCTTAGTGGGA 59.222 47.619 0.00 0.00 39.66 4.37
7108 7548 2.175931 TCCCTTGTTTGCTTAGTGGGAA 59.824 45.455 0.00 0.00 39.09 3.97
7109 7549 2.296190 CCCTTGTTTGCTTAGTGGGAAC 59.704 50.000 0.00 0.00 35.40 3.62
7110 7550 3.222603 CCTTGTTTGCTTAGTGGGAACT 58.777 45.455 0.00 0.00 0.00 3.01
7111 7551 3.253432 CCTTGTTTGCTTAGTGGGAACTC 59.747 47.826 0.00 0.00 0.00 3.01
7112 7552 2.489971 TGTTTGCTTAGTGGGAACTCG 58.510 47.619 0.00 0.00 0.00 4.18
7113 7553 2.158871 TGTTTGCTTAGTGGGAACTCGT 60.159 45.455 0.00 0.00 0.00 4.18
7114 7554 3.069872 TGTTTGCTTAGTGGGAACTCGTA 59.930 43.478 0.00 0.00 0.00 3.43
7115 7555 3.587797 TTGCTTAGTGGGAACTCGTAG 57.412 47.619 0.00 0.00 0.00 3.51
7116 7556 1.203994 TGCTTAGTGGGAACTCGTAGC 59.796 52.381 0.00 0.00 36.41 3.58
7117 7557 1.798079 GCTTAGTGGGAACTCGTAGCG 60.798 57.143 0.00 0.00 0.00 4.26
7118 7558 1.741706 CTTAGTGGGAACTCGTAGCGA 59.258 52.381 0.00 0.00 0.00 4.93
7119 7559 1.825090 TAGTGGGAACTCGTAGCGAA 58.175 50.000 0.00 0.00 34.74 4.70
7120 7560 0.963962 AGTGGGAACTCGTAGCGAAA 59.036 50.000 0.00 0.00 34.74 3.46
7121 7561 1.066136 GTGGGAACTCGTAGCGAAAC 58.934 55.000 0.00 0.00 34.74 2.78
7122 7562 0.675083 TGGGAACTCGTAGCGAAACA 59.325 50.000 0.00 0.00 34.74 2.83
7123 7563 1.068895 TGGGAACTCGTAGCGAAACAA 59.931 47.619 0.00 0.00 34.74 2.83
7124 7564 1.458445 GGGAACTCGTAGCGAAACAAC 59.542 52.381 0.00 0.00 34.74 3.32
7125 7565 1.458445 GGAACTCGTAGCGAAACAACC 59.542 52.381 0.00 0.00 34.74 3.77
7126 7566 1.123756 GAACTCGTAGCGAAACAACCG 59.876 52.381 0.00 0.00 34.74 4.44
7127 7567 0.311790 ACTCGTAGCGAAACAACCGA 59.688 50.000 0.00 0.00 34.74 4.69
7128 7568 1.269206 ACTCGTAGCGAAACAACCGAA 60.269 47.619 0.00 0.00 34.74 4.30
7129 7569 1.788308 CTCGTAGCGAAACAACCGAAA 59.212 47.619 0.00 0.00 34.74 3.46
7130 7570 1.788308 TCGTAGCGAAACAACCGAAAG 59.212 47.619 0.00 0.00 31.06 2.62
7131 7571 1.788308 CGTAGCGAAACAACCGAAAGA 59.212 47.619 0.00 0.00 0.00 2.52
7132 7572 2.410730 CGTAGCGAAACAACCGAAAGAT 59.589 45.455 0.00 0.00 0.00 2.40
7133 7573 3.120786 CGTAGCGAAACAACCGAAAGATT 60.121 43.478 0.00 0.00 0.00 2.40
7134 7574 4.090354 CGTAGCGAAACAACCGAAAGATTA 59.910 41.667 0.00 0.00 0.00 1.75
7135 7575 5.220340 CGTAGCGAAACAACCGAAAGATTAT 60.220 40.000 0.00 0.00 0.00 1.28
7136 7576 6.020440 CGTAGCGAAACAACCGAAAGATTATA 60.020 38.462 0.00 0.00 0.00 0.98
7137 7577 6.730960 AGCGAAACAACCGAAAGATTATAA 57.269 33.333 0.00 0.00 0.00 0.98
7138 7578 7.136289 AGCGAAACAACCGAAAGATTATAAA 57.864 32.000 0.00 0.00 0.00 1.40
7139 7579 7.019418 AGCGAAACAACCGAAAGATTATAAAC 58.981 34.615 0.00 0.00 0.00 2.01
7140 7580 6.797995 GCGAAACAACCGAAAGATTATAAACA 59.202 34.615 0.00 0.00 0.00 2.83
7141 7581 7.483691 GCGAAACAACCGAAAGATTATAAACAT 59.516 33.333 0.00 0.00 0.00 2.71
7142 7582 9.976255 CGAAACAACCGAAAGATTATAAACATA 57.024 29.630 0.00 0.00 0.00 2.29
7158 7598 9.941325 TTATAAACATAAGTTACGGTGAAAGGA 57.059 29.630 0.00 0.00 36.84 3.36
7159 7599 6.549912 AAACATAAGTTACGGTGAAAGGAC 57.450 37.500 0.00 0.00 36.84 3.85
7160 7600 4.240096 ACATAAGTTACGGTGAAAGGACG 58.760 43.478 0.00 0.00 0.00 4.79
7161 7601 4.022068 ACATAAGTTACGGTGAAAGGACGA 60.022 41.667 0.00 0.00 0.00 4.20
7162 7602 2.719426 AGTTACGGTGAAAGGACGAG 57.281 50.000 0.00 0.00 0.00 4.18
7163 7603 2.233271 AGTTACGGTGAAAGGACGAGA 58.767 47.619 0.00 0.00 0.00 4.04
7164 7604 2.824341 AGTTACGGTGAAAGGACGAGAT 59.176 45.455 0.00 0.00 0.00 2.75
7165 7605 2.921754 GTTACGGTGAAAGGACGAGATG 59.078 50.000 0.00 0.00 0.00 2.90
7166 7606 0.966920 ACGGTGAAAGGACGAGATGT 59.033 50.000 0.00 0.00 0.00 3.06
7167 7607 1.343465 ACGGTGAAAGGACGAGATGTT 59.657 47.619 0.00 0.00 0.00 2.71
7168 7608 1.993370 CGGTGAAAGGACGAGATGTTC 59.007 52.381 0.00 0.00 0.00 3.18
7169 7609 2.352814 CGGTGAAAGGACGAGATGTTCT 60.353 50.000 0.00 0.00 38.41 3.01
7170 7610 3.254892 GGTGAAAGGACGAGATGTTCTC 58.745 50.000 0.00 0.00 34.32 2.87
7171 7611 3.056465 GGTGAAAGGACGAGATGTTCTCT 60.056 47.826 0.00 0.00 41.26 3.10
7172 7612 4.158025 GGTGAAAGGACGAGATGTTCTCTA 59.842 45.833 0.00 0.00 41.26 2.43
7173 7613 5.163499 GGTGAAAGGACGAGATGTTCTCTAT 60.163 44.000 0.00 0.00 41.26 1.98
7174 7614 6.039493 GGTGAAAGGACGAGATGTTCTCTATA 59.961 42.308 0.00 0.00 41.26 1.31
7175 7615 7.416438 GGTGAAAGGACGAGATGTTCTCTATAA 60.416 40.741 0.00 0.00 41.26 0.98
7176 7616 7.974501 GTGAAAGGACGAGATGTTCTCTATAAA 59.025 37.037 0.00 0.00 41.26 1.40
7177 7617 8.696374 TGAAAGGACGAGATGTTCTCTATAAAT 58.304 33.333 0.00 0.00 41.26 1.40
7178 7618 9.535878 GAAAGGACGAGATGTTCTCTATAAATT 57.464 33.333 0.00 0.00 41.26 1.82
7202 7642 8.940397 TTAATTCCCTCATAAATTCTCATCCC 57.060 34.615 0.00 0.00 0.00 3.85
7203 7643 5.324832 TTCCCTCATAAATTCTCATCCCC 57.675 43.478 0.00 0.00 0.00 4.81
7204 7644 4.581233 TCCCTCATAAATTCTCATCCCCT 58.419 43.478 0.00 0.00 0.00 4.79
7205 7645 4.599241 TCCCTCATAAATTCTCATCCCCTC 59.401 45.833 0.00 0.00 0.00 4.30
7206 7646 4.263683 CCCTCATAAATTCTCATCCCCTCC 60.264 50.000 0.00 0.00 0.00 4.30
7207 7647 4.352001 CCTCATAAATTCTCATCCCCTCCA 59.648 45.833 0.00 0.00 0.00 3.86
7208 7648 5.163055 CCTCATAAATTCTCATCCCCTCCAA 60.163 44.000 0.00 0.00 0.00 3.53
7209 7649 5.945310 TCATAAATTCTCATCCCCTCCAAG 58.055 41.667 0.00 0.00 0.00 3.61
7210 7650 2.744352 AATTCTCATCCCCTCCAAGC 57.256 50.000 0.00 0.00 0.00 4.01
7211 7651 1.600058 ATTCTCATCCCCTCCAAGCA 58.400 50.000 0.00 0.00 0.00 3.91
7212 7652 1.371467 TTCTCATCCCCTCCAAGCAA 58.629 50.000 0.00 0.00 0.00 3.91
7213 7653 1.371467 TCTCATCCCCTCCAAGCAAA 58.629 50.000 0.00 0.00 0.00 3.68
7214 7654 1.004745 TCTCATCCCCTCCAAGCAAAC 59.995 52.381 0.00 0.00 0.00 2.93
7215 7655 0.776810 TCATCCCCTCCAAGCAAACA 59.223 50.000 0.00 0.00 0.00 2.83
7216 7656 1.180029 CATCCCCTCCAAGCAAACAG 58.820 55.000 0.00 0.00 0.00 3.16
7217 7657 0.040204 ATCCCCTCCAAGCAAACAGG 59.960 55.000 0.00 0.00 0.00 4.00
7218 7658 1.153756 CCCCTCCAAGCAAACAGGT 59.846 57.895 0.00 0.00 0.00 4.00
7219 7659 0.404040 CCCCTCCAAGCAAACAGGTA 59.596 55.000 0.00 0.00 0.00 3.08
7220 7660 1.203001 CCCCTCCAAGCAAACAGGTAA 60.203 52.381 0.00 0.00 0.00 2.85
7221 7661 2.162681 CCCTCCAAGCAAACAGGTAAG 58.837 52.381 0.00 0.00 0.00 2.34
7222 7662 2.224769 CCCTCCAAGCAAACAGGTAAGA 60.225 50.000 0.00 0.00 0.00 2.10
7223 7663 2.814336 CCTCCAAGCAAACAGGTAAGAC 59.186 50.000 0.00 0.00 0.00 3.01
7224 7664 2.814336 CTCCAAGCAAACAGGTAAGACC 59.186 50.000 0.00 0.00 38.99 3.85
7225 7665 2.173782 TCCAAGCAAACAGGTAAGACCA 59.826 45.455 0.00 0.00 41.95 4.02
7226 7666 2.955660 CCAAGCAAACAGGTAAGACCAA 59.044 45.455 0.00 0.00 41.95 3.67
7227 7667 3.243401 CCAAGCAAACAGGTAAGACCAAC 60.243 47.826 0.00 0.00 41.95 3.77
7228 7668 3.577805 AGCAAACAGGTAAGACCAACT 57.422 42.857 0.00 0.00 41.95 3.16
7229 7669 3.477530 AGCAAACAGGTAAGACCAACTC 58.522 45.455 0.00 0.00 41.95 3.01
7230 7670 2.552743 GCAAACAGGTAAGACCAACTCC 59.447 50.000 0.00 0.00 41.95 3.85
7231 7671 3.815809 CAAACAGGTAAGACCAACTCCA 58.184 45.455 0.00 0.00 41.95 3.86
7232 7672 4.204012 CAAACAGGTAAGACCAACTCCAA 58.796 43.478 0.00 0.00 41.95 3.53
7233 7673 4.724279 AACAGGTAAGACCAACTCCAAT 57.276 40.909 0.00 0.00 41.95 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 17 2.884639 CGGAGGGTAAAATATTGGCAGG 59.115 50.000 0.00 0.00 0.00 4.85
102 111 9.122779 AGTCCATGAGTAGTAGTACTGTAAATC 57.877 37.037 15.07 2.80 39.78 2.17
103 112 9.122779 GAGTCCATGAGTAGTAGTACTGTAAAT 57.877 37.037 15.07 1.33 39.78 1.40
104 113 7.279536 CGAGTCCATGAGTAGTAGTACTGTAAA 59.720 40.741 15.07 0.00 39.78 2.01
105 114 6.760298 CGAGTCCATGAGTAGTAGTACTGTAA 59.240 42.308 15.07 1.39 39.78 2.41
169 199 5.748670 TTATCCTACCAGCAGTACAACAA 57.251 39.130 0.00 0.00 0.00 2.83
179 215 6.817140 CGGACCTATTTTATTATCCTACCAGC 59.183 42.308 0.00 0.00 0.00 4.85
242 279 9.072294 CACGACATTTGTTTTTATTTATCTCCC 57.928 33.333 0.00 0.00 0.00 4.30
243 280 8.583765 GCACGACATTTGTTTTTATTTATCTCC 58.416 33.333 0.00 0.00 0.00 3.71
244 281 9.341899 AGCACGACATTTGTTTTTATTTATCTC 57.658 29.630 0.00 0.00 0.00 2.75
245 282 9.691362 AAGCACGACATTTGTTTTTATTTATCT 57.309 25.926 0.00 0.00 0.00 1.98
264 309 4.501071 GGGTAGAAACAAGATAAGCACGA 58.499 43.478 0.00 0.00 0.00 4.35
268 318 4.080526 TCAGGGGGTAGAAACAAGATAAGC 60.081 45.833 0.00 0.00 0.00 3.09
463 531 2.880443 ACCTACTACCGTTTCTGGACA 58.120 47.619 0.00 0.00 0.00 4.02
476 544 7.338710 CCTCATCAAGAAATGGAAACCTACTA 58.661 38.462 0.00 0.00 0.00 1.82
593 665 4.023536 GTGACCTAGAATTTTTGCAACGGA 60.024 41.667 0.00 0.00 0.00 4.69
637 729 5.420104 AGGTGAAAATGCTCCTGATTTTAGG 59.580 40.000 0.00 0.00 34.00 2.69
647 749 7.404671 TCCTAATTTAAGGTGAAAATGCTCC 57.595 36.000 0.00 0.00 37.91 4.70
671 774 2.980379 AGTCTGGGCTCATCATCATCAT 59.020 45.455 0.00 0.00 0.00 2.45
678 781 6.313519 AGTTTTATTAGTCTGGGCTCATCA 57.686 37.500 0.00 0.00 0.00 3.07
679 782 5.463724 CGAGTTTTATTAGTCTGGGCTCATC 59.536 44.000 0.00 0.00 0.00 2.92
680 783 5.360591 CGAGTTTTATTAGTCTGGGCTCAT 58.639 41.667 0.00 0.00 0.00 2.90
681 784 4.382685 CCGAGTTTTATTAGTCTGGGCTCA 60.383 45.833 0.00 0.00 0.00 4.26
682 785 4.120589 CCGAGTTTTATTAGTCTGGGCTC 58.879 47.826 0.00 0.00 0.00 4.70
683 786 3.518303 ACCGAGTTTTATTAGTCTGGGCT 59.482 43.478 0.00 0.00 30.76 5.19
684 787 3.870274 ACCGAGTTTTATTAGTCTGGGC 58.130 45.455 0.00 0.00 30.76 5.36
686 789 7.386848 TCAAGAAACCGAGTTTTATTAGTCTGG 59.613 37.037 3.96 0.00 35.77 3.86
687 790 8.306680 TCAAGAAACCGAGTTTTATTAGTCTG 57.693 34.615 3.96 0.00 35.77 3.51
693 796 9.810545 TCAAAATTCAAGAAACCGAGTTTTATT 57.189 25.926 3.96 1.21 35.77 1.40
694 797 9.981114 ATCAAAATTCAAGAAACCGAGTTTTAT 57.019 25.926 3.96 0.00 35.77 1.40
695 798 9.810545 AATCAAAATTCAAGAAACCGAGTTTTA 57.189 25.926 3.96 0.00 35.77 1.52
696 799 8.716646 AATCAAAATTCAAGAAACCGAGTTTT 57.283 26.923 3.96 0.00 35.77 2.43
697 800 8.716646 AAATCAAAATTCAAGAAACCGAGTTT 57.283 26.923 2.23 2.23 38.54 2.66
698 801 9.810545 TTAAATCAAAATTCAAGAAACCGAGTT 57.189 25.926 0.00 0.00 0.00 3.01
699 802 9.981114 ATTAAATCAAAATTCAAGAAACCGAGT 57.019 25.926 0.00 0.00 0.00 4.18
723 826 8.616076 CACTAACAAAAAGAGAAGACACAGATT 58.384 33.333 0.00 0.00 0.00 2.40
726 829 6.316390 ACCACTAACAAAAAGAGAAGACACAG 59.684 38.462 0.00 0.00 0.00 3.66
728 831 6.487103 CACCACTAACAAAAAGAGAAGACAC 58.513 40.000 0.00 0.00 0.00 3.67
729 832 5.065988 GCACCACTAACAAAAAGAGAAGACA 59.934 40.000 0.00 0.00 0.00 3.41
730 833 5.065988 TGCACCACTAACAAAAAGAGAAGAC 59.934 40.000 0.00 0.00 0.00 3.01
732 835 5.499139 TGCACCACTAACAAAAAGAGAAG 57.501 39.130 0.00 0.00 0.00 2.85
735 838 4.445385 GCAATGCACCACTAACAAAAAGAG 59.555 41.667 0.00 0.00 0.00 2.85
738 841 3.119291 CGCAATGCACCACTAACAAAAA 58.881 40.909 5.91 0.00 0.00 1.94
741 844 1.313772 ACGCAATGCACCACTAACAA 58.686 45.000 5.91 0.00 0.00 2.83
743 846 2.050691 CAAACGCAATGCACCACTAAC 58.949 47.619 5.91 0.00 0.00 2.34
744 847 1.601663 GCAAACGCAATGCACCACTAA 60.602 47.619 5.91 0.00 43.29 2.24
745 848 0.039617 GCAAACGCAATGCACCACTA 60.040 50.000 5.91 0.00 43.29 2.74
747 850 2.309501 GGCAAACGCAATGCACCAC 61.310 57.895 5.91 0.00 45.60 4.16
749 852 2.738139 GGGCAAACGCAATGCACC 60.738 61.111 5.91 0.00 45.60 5.01
758 861 3.788333 ATTTGATGAGATGGGCAAACG 57.212 42.857 0.00 0.00 33.62 3.60
796 900 3.964875 CCCAGCAACCGCACACAC 61.965 66.667 0.00 0.00 42.27 3.82
1069 1188 0.516439 GAGAAGAACGACGACGAGGT 59.484 55.000 15.32 0.00 42.66 3.85
1072 1191 0.945743 TCGGAGAAGAACGACGACGA 60.946 55.000 15.32 0.00 42.66 4.20
1073 1192 0.110509 TTCGGAGAAGAACGACGACG 60.111 55.000 5.58 5.58 45.90 5.12
1074 1193 1.196354 TCTTCGGAGAAGAACGACGAC 59.804 52.381 9.74 0.00 45.90 4.34
1114 1236 8.336801 TCTTTTTATCTTCCTACTTTCTTGCC 57.663 34.615 0.00 0.00 0.00 4.52
1159 1283 2.825861 ATTTGCCAGCAGAAACCAAG 57.174 45.000 0.00 0.00 0.00 3.61
1412 1565 5.922960 ACCAGGACATATTATTTAGGCCA 57.077 39.130 5.01 0.00 0.00 5.36
1424 1577 2.496070 CACGAAGGAGAACCAGGACATA 59.504 50.000 0.00 0.00 38.94 2.29
1452 1605 2.773087 ACTGTACCAACTACCAACACCA 59.227 45.455 0.00 0.00 0.00 4.17
1512 1666 6.163135 AGTTAGGTATGCATCCTTGTCTAC 57.837 41.667 18.81 3.64 36.60 2.59
1519 1673 2.780010 AGGCAAGTTAGGTATGCATCCT 59.220 45.455 18.00 18.00 41.80 3.24
1658 1813 2.738587 TGGTTTCAGCCAGTTGGTTA 57.261 45.000 0.00 0.00 37.57 2.85
1697 1852 5.624509 GCAAGGAGAAAAACTGAACCAAACT 60.625 40.000 0.00 0.00 0.00 2.66
1698 1853 4.566759 GCAAGGAGAAAAACTGAACCAAAC 59.433 41.667 0.00 0.00 0.00 2.93
1701 1856 2.693074 GGCAAGGAGAAAAACTGAACCA 59.307 45.455 0.00 0.00 0.00 3.67
1828 1991 0.631212 AACATCCCCACTCATTCCCC 59.369 55.000 0.00 0.00 0.00 4.81
1844 2007 4.798882 ACCATTCCCACTGTAAGAAAACA 58.201 39.130 0.00 0.00 37.43 2.83
1953 2116 4.793071 TGGAAAGCATGTGTTAAATGACG 58.207 39.130 0.00 0.00 0.00 4.35
2085 2248 2.203070 CTTCAGGATTCGCCCCCG 60.203 66.667 0.00 0.00 37.37 5.73
2156 2319 2.768492 GCCCCATCGCTTTGCTGAG 61.768 63.158 0.00 0.00 0.00 3.35
2212 2375 0.319040 CAGGGGTCGTGAGCATATCG 60.319 60.000 1.13 0.00 0.00 2.92
2260 2423 1.002746 TGTTCCAGCAATAGCCGCA 60.003 52.632 0.00 0.00 43.56 5.69
2274 2437 1.532868 CACAGTTGCCACTAGCTGTTC 59.467 52.381 0.00 0.00 39.64 3.18
2281 2444 3.838244 AGAAACTCACAGTTGCCACTA 57.162 42.857 0.00 0.00 38.66 2.74
2325 2492 2.545946 AGAAGAAGAAGAAACGCTGCAC 59.454 45.455 0.00 0.00 0.00 4.57
2361 2528 1.598601 CTGCAAAAACGCAAGGCAAAT 59.401 42.857 0.00 0.00 42.45 2.32
2397 2564 0.033601 AGACTGGCCACAAACACCAA 60.034 50.000 0.00 0.00 31.81 3.67
2455 2622 1.344496 ACTTCCTCCATGGACCCTAGG 60.344 57.143 11.44 10.67 46.14 3.02
2650 2817 2.615912 GGATCCTTCCAGATTTCTTGCG 59.384 50.000 3.84 0.00 42.12 4.85
2743 2910 6.075762 TCAGAATCAAGAATGTTGGTGTTG 57.924 37.500 0.00 0.00 0.00 3.33
2838 3007 2.292292 TGAGTTTAAAAGGGCAGCGTTC 59.708 45.455 0.00 0.00 0.00 3.95
2891 3060 5.590259 CCTTGCAGGTGTAAAGCTTATGTAT 59.410 40.000 0.00 0.00 0.00 2.29
3054 3223 8.399425 AGAACACGTGATATGTCTACTAGAAAG 58.601 37.037 25.01 0.00 0.00 2.62
3109 3282 1.134521 GTCCAGATCATAACCCGCACA 60.135 52.381 0.00 0.00 0.00 4.57
3114 3287 5.475909 TGTATAGACGTCCAGATCATAACCC 59.524 44.000 13.01 0.00 0.00 4.11
3122 3295 7.822334 TCAAAACATTTGTATAGACGTCCAGAT 59.178 33.333 13.01 6.20 0.00 2.90
3123 3296 7.156000 TCAAAACATTTGTATAGACGTCCAGA 58.844 34.615 13.01 0.00 0.00 3.86
3130 3457 8.970691 AACAGCATCAAAACATTTGTATAGAC 57.029 30.769 3.06 0.00 0.00 2.59
3156 3483 4.610333 TCCCTACAGAAGTAGCAGATCAA 58.390 43.478 0.00 0.00 45.15 2.57
3209 3536 3.810941 TCGATGTTAGACACCACCAAAAC 59.189 43.478 0.00 0.00 0.00 2.43
3232 3559 5.824421 AGATCATCATTGGAAACAGAAGGT 58.176 37.500 0.00 0.00 44.54 3.50
3305 3632 9.103861 TCCTAATTTTTACAAAGCAAAGTTTGG 57.896 29.630 17.11 3.14 41.03 3.28
3324 3651 0.921256 ACAGGCTGGGGCTCCTAATT 60.921 55.000 20.34 0.00 35.88 1.40
3338 3665 4.306600 CAACAAAAAGGGTCATTACAGGC 58.693 43.478 0.00 0.00 0.00 4.85
3534 3861 3.242248 CGTACGAATAAAGGCAGCAGTAC 59.758 47.826 10.44 0.00 0.00 2.73
3563 3890 7.284944 ACAGTATATTAGATCCCCGCACTATAC 59.715 40.741 0.00 0.00 0.00 1.47
3571 3898 5.946972 ACAGAGACAGTATATTAGATCCCCG 59.053 44.000 0.00 0.00 0.00 5.73
3585 3914 1.896465 GCTGGTAGGAACAGAGACAGT 59.104 52.381 0.00 0.00 38.20 3.55
3601 3930 3.265791 GGATACTGTTGTCTCAAGCTGG 58.734 50.000 0.00 0.00 0.00 4.85
3611 3940 2.755655 CCACTCTCTCGGATACTGTTGT 59.244 50.000 0.00 0.00 0.00 3.32
3679 4008 6.074516 CGTTTAGTCATGTATCGTACCAATGG 60.075 42.308 0.00 0.00 0.00 3.16
3688 4017 7.044510 ACGACAAATACGTTTAGTCATGTATCG 60.045 37.037 0.00 0.00 41.18 2.92
3700 4029 7.821595 TCTGATGAATACGACAAATACGTTT 57.178 32.000 0.00 0.00 43.62 3.60
3703 4032 8.286996 AGAATCTGATGAATACGACAAATACG 57.713 34.615 0.00 0.00 0.00 3.06
3706 4035 9.770097 ATGTAGAATCTGATGAATACGACAAAT 57.230 29.630 0.00 0.00 0.00 2.32
3707 4036 9.599866 AATGTAGAATCTGATGAATACGACAAA 57.400 29.630 0.00 0.00 0.00 2.83
3708 4037 9.599866 AAATGTAGAATCTGATGAATACGACAA 57.400 29.630 0.00 0.00 0.00 3.18
3709 4038 9.249457 GAAATGTAGAATCTGATGAATACGACA 57.751 33.333 0.00 0.00 0.00 4.35
3710 4039 9.249457 TGAAATGTAGAATCTGATGAATACGAC 57.751 33.333 0.00 0.00 0.00 4.34
3711 4040 9.987272 ATGAAATGTAGAATCTGATGAATACGA 57.013 29.630 0.00 0.00 0.00 3.43
3757 4087 5.136828 TGTTTGACATGTCCAAGGTAATGT 58.863 37.500 22.85 8.47 36.00 2.71
3758 4088 5.335897 CCTGTTTGACATGTCCAAGGTAATG 60.336 44.000 22.85 4.70 0.00 1.90
3759 4089 4.766891 CCTGTTTGACATGTCCAAGGTAAT 59.233 41.667 22.85 0.00 0.00 1.89
3760 4090 4.141287 CCTGTTTGACATGTCCAAGGTAA 58.859 43.478 22.85 6.66 0.00 2.85
3761 4091 3.392947 TCCTGTTTGACATGTCCAAGGTA 59.607 43.478 22.85 10.77 0.00 3.08
3771 4101 1.561542 CTAGGGCCTCCTGTTTGACAT 59.438 52.381 10.74 0.00 44.61 3.06
3791 4121 1.367659 GGTGCTGCTCTCATGACTTC 58.632 55.000 0.00 0.00 0.00 3.01
3810 4140 6.391227 ACCGGAGAAAATAAATTATGCAGG 57.609 37.500 9.46 0.00 0.00 4.85
3856 4186 1.001020 TTGAAGCGATGCCATGGGT 60.001 52.632 15.13 0.00 0.00 4.51
3933 4263 4.937620 CCAAGTTCACTAATAGCAGCTTGA 59.062 41.667 0.00 0.00 35.47 3.02
4024 4354 8.956426 GGAGATGTTACAAATACCATTTTGAGA 58.044 33.333 4.10 0.00 38.58 3.27
4025 4355 8.739039 TGGAGATGTTACAAATACCATTTTGAG 58.261 33.333 4.10 0.00 38.58 3.02
4032 4362 6.177610 GGACTTGGAGATGTTACAAATACCA 58.822 40.000 0.00 0.00 0.00 3.25
4044 4374 4.146745 TGATGTCATGGACTTGGAGATG 57.853 45.455 0.00 0.00 33.15 2.90
4195 4525 6.884280 AGGTTTACAGGAGACAATGAAAAG 57.116 37.500 0.00 0.00 0.00 2.27
4221 4551 4.846779 TCCATGCTGAACAGGTAAAAAC 57.153 40.909 3.99 0.00 0.00 2.43
4251 4581 5.532025 ACAAAACTATAGAAAGCAGCGAC 57.468 39.130 6.78 0.00 0.00 5.19
4315 4645 8.489990 ACATGCACATATATTGATCTAGAAGC 57.510 34.615 0.00 0.00 0.00 3.86
4324 4654 9.612066 TTCTTTCTGTACATGCACATATATTGA 57.388 29.630 0.00 0.00 0.00 2.57
4806 5152 1.358152 CAGGAAACCCTACACTCCCA 58.642 55.000 0.00 0.00 31.47 4.37
4923 5269 0.314618 TGCACATTTGTTGCAGCGAT 59.685 45.000 0.00 0.00 33.62 4.58
5144 5490 1.181098 AAGCCCGAAAGCAGTGCAAT 61.181 50.000 19.20 4.95 34.23 3.56
5158 5504 6.405176 CCTCATTAATGTGAAAGAAGAAGCCC 60.405 42.308 17.08 0.00 0.00 5.19
5522 5876 9.166173 TCTCTTCAAATGTATACTGAATTGGTG 57.834 33.333 4.17 0.00 0.00 4.17
5588 5948 7.887996 ACCAAGCAAAACACAATGTAATATG 57.112 32.000 0.00 0.00 0.00 1.78
5697 6057 1.597854 TGTTGCCACCTTCTCGCTG 60.598 57.895 0.00 0.00 0.00 5.18
5866 6245 7.450634 TGGTGTCTACTATCTAAACTGAACTGT 59.549 37.037 0.00 0.00 0.00 3.55
5870 6249 9.696572 AGTATGGTGTCTACTATCTAAACTGAA 57.303 33.333 0.00 0.00 0.00 3.02
5904 6286 1.154054 GGCAATGCATTCGCGACAA 60.154 52.632 9.15 0.00 42.97 3.18
5905 6287 2.484662 GGCAATGCATTCGCGACA 59.515 55.556 9.15 3.80 42.97 4.35
5911 6293 5.603596 TCTATGAAATTGGGCAATGCATTC 58.396 37.500 9.53 4.70 32.52 2.67
5914 6296 4.897076 AGATCTATGAAATTGGGCAATGCA 59.103 37.500 7.79 0.00 0.00 3.96
5915 6297 5.221382 ACAGATCTATGAAATTGGGCAATGC 60.221 40.000 0.00 0.00 0.00 3.56
5919 6301 7.560991 ACATAAACAGATCTATGAAATTGGGCA 59.439 33.333 9.67 0.00 31.28 5.36
5921 6303 8.906867 ACACATAAACAGATCTATGAAATTGGG 58.093 33.333 9.67 0.41 31.28 4.12
5949 6337 6.150318 AGTGTTTAACTGACTACTGTGATCG 58.850 40.000 0.00 0.00 37.88 3.69
5958 6350 8.951787 AACATGTACAAGTGTTTAACTGACTA 57.048 30.769 4.21 0.00 39.81 2.59
5983 6375 9.617523 TTTGCATCATCAGAAGATATTGTTAGA 57.382 29.630 0.00 0.00 31.88 2.10
5995 6392 4.022935 GTCAACCACTTTGCATCATCAGAA 60.023 41.667 0.00 0.00 34.88 3.02
6045 6442 4.398319 TCCTGGCCAAAACAAAACAAAAA 58.602 34.783 7.01 0.00 0.00 1.94
6046 6443 4.021102 TCCTGGCCAAAACAAAACAAAA 57.979 36.364 7.01 0.00 0.00 2.44
6047 6444 3.703001 TCCTGGCCAAAACAAAACAAA 57.297 38.095 7.01 0.00 0.00 2.83
6048 6445 3.339141 GTTCCTGGCCAAAACAAAACAA 58.661 40.909 20.52 0.00 0.00 2.83
6049 6446 2.355209 GGTTCCTGGCCAAAACAAAACA 60.355 45.455 24.54 0.00 0.00 2.83
6050 6447 2.093181 AGGTTCCTGGCCAAAACAAAAC 60.093 45.455 24.54 14.54 0.00 2.43
6055 6452 1.070134 GGAAAGGTTCCTGGCCAAAAC 59.930 52.381 18.26 18.26 46.57 2.43
6412 6817 3.069318 ACTTCGCCGTCCCTCCTC 61.069 66.667 0.00 0.00 0.00 3.71
6428 6833 1.499056 CACATCACCTCTTGCGCAC 59.501 57.895 11.12 0.00 0.00 5.34
6602 7009 5.882557 CAGTAGAAGCATTTAGACACCCAAT 59.117 40.000 0.00 0.00 0.00 3.16
6633 7041 2.097304 TCATGTTACGCCATCACATTGC 59.903 45.455 0.00 0.00 0.00 3.56
6670 7079 5.180271 TCAAACGTTTTGGGGTAGCTATAG 58.820 41.667 11.66 0.00 0.00 1.31
6671 7080 5.163281 TCAAACGTTTTGGGGTAGCTATA 57.837 39.130 11.66 0.00 0.00 1.31
6672 7081 4.023726 TCAAACGTTTTGGGGTAGCTAT 57.976 40.909 11.66 0.00 0.00 2.97
6673 7082 3.488778 TCAAACGTTTTGGGGTAGCTA 57.511 42.857 11.66 0.00 0.00 3.32
6674 7083 2.351706 TCAAACGTTTTGGGGTAGCT 57.648 45.000 11.66 0.00 0.00 3.32
6677 7086 4.271661 AGAACTTCAAACGTTTTGGGGTA 58.728 39.130 11.66 0.00 0.00 3.69
6678 7087 3.093814 AGAACTTCAAACGTTTTGGGGT 58.906 40.909 11.66 2.37 0.00 4.95
6715 7124 4.456911 GCATCTTCACTTGGAGATGTTTGA 59.543 41.667 23.02 0.00 39.99 2.69
6780 7189 7.940137 ACCAACATACTTAACCATACAAAGACA 59.060 33.333 0.00 0.00 0.00 3.41
6781 7190 8.331730 ACCAACATACTTAACCATACAAAGAC 57.668 34.615 0.00 0.00 0.00 3.01
6784 7193 8.353684 CACAACCAACATACTTAACCATACAAA 58.646 33.333 0.00 0.00 0.00 2.83
6785 7194 7.502895 ACACAACCAACATACTTAACCATACAA 59.497 33.333 0.00 0.00 0.00 2.41
6786 7195 6.999272 ACACAACCAACATACTTAACCATACA 59.001 34.615 0.00 0.00 0.00 2.29
6787 7196 7.302524 CACACAACCAACATACTTAACCATAC 58.697 38.462 0.00 0.00 0.00 2.39
6788 7197 6.072397 GCACACAACCAACATACTTAACCATA 60.072 38.462 0.00 0.00 0.00 2.74
6789 7198 5.278758 GCACACAACCAACATACTTAACCAT 60.279 40.000 0.00 0.00 0.00 3.55
6790 7199 4.036971 GCACACAACCAACATACTTAACCA 59.963 41.667 0.00 0.00 0.00 3.67
6791 7200 4.036971 TGCACACAACCAACATACTTAACC 59.963 41.667 0.00 0.00 0.00 2.85
6792 7201 5.176407 TGCACACAACCAACATACTTAAC 57.824 39.130 0.00 0.00 0.00 2.01
6793 7202 5.048364 GGATGCACACAACCAACATACTTAA 60.048 40.000 0.00 0.00 38.58 1.85
6794 7203 4.457603 GGATGCACACAACCAACATACTTA 59.542 41.667 0.00 0.00 38.58 2.24
6795 7204 3.255642 GGATGCACACAACCAACATACTT 59.744 43.478 0.00 0.00 38.58 2.24
6796 7205 2.819608 GGATGCACACAACCAACATACT 59.180 45.455 0.00 0.00 38.58 2.12
6797 7206 2.819608 AGGATGCACACAACCAACATAC 59.180 45.455 0.00 0.00 41.12 2.39
6798 7207 3.153369 AGGATGCACACAACCAACATA 57.847 42.857 0.00 0.00 41.12 2.29
6799 7208 1.999648 AGGATGCACACAACCAACAT 58.000 45.000 0.00 0.00 41.12 2.71
6800 7209 2.621055 GTTAGGATGCACACAACCAACA 59.379 45.455 0.00 0.00 41.12 3.33
6801 7210 2.884639 AGTTAGGATGCACACAACCAAC 59.115 45.455 0.00 0.00 41.12 3.77
6802 7211 3.222173 AGTTAGGATGCACACAACCAA 57.778 42.857 0.00 0.00 41.12 3.67
6803 7212 2.949177 AGTTAGGATGCACACAACCA 57.051 45.000 0.00 0.00 41.12 3.67
6804 7213 4.513442 TCATAGTTAGGATGCACACAACC 58.487 43.478 0.00 0.00 39.00 3.77
6805 7214 5.817296 TCATCATAGTTAGGATGCACACAAC 59.183 40.000 8.51 0.00 42.42 3.32
6806 7215 5.988287 TCATCATAGTTAGGATGCACACAA 58.012 37.500 8.51 0.00 42.42 3.33
6807 7216 5.612725 TCATCATAGTTAGGATGCACACA 57.387 39.130 8.51 0.00 42.42 3.72
6808 7217 6.051717 ACTTCATCATAGTTAGGATGCACAC 58.948 40.000 8.51 0.00 42.42 3.82
6809 7218 6.239217 ACTTCATCATAGTTAGGATGCACA 57.761 37.500 8.51 0.00 42.42 4.57
6810 7219 6.017605 CCAACTTCATCATAGTTAGGATGCAC 60.018 42.308 8.51 0.00 42.42 4.57
6811 7220 6.057533 CCAACTTCATCATAGTTAGGATGCA 58.942 40.000 8.51 0.00 42.42 3.96
6812 7221 5.471456 CCCAACTTCATCATAGTTAGGATGC 59.529 44.000 8.51 0.00 42.42 3.91
6813 7222 6.484643 CACCCAACTTCATCATAGTTAGGATG 59.515 42.308 7.32 7.32 43.63 3.51
6814 7223 6.158695 ACACCCAACTTCATCATAGTTAGGAT 59.841 38.462 7.11 0.00 36.77 3.24
6815 7224 5.487488 ACACCCAACTTCATCATAGTTAGGA 59.513 40.000 7.11 0.00 36.77 2.94
6816 7225 5.586243 CACACCCAACTTCATCATAGTTAGG 59.414 44.000 0.00 0.00 39.40 2.69
6817 7226 6.092670 CACACACCCAACTTCATCATAGTTAG 59.907 42.308 0.00 0.00 34.22 2.34
6818 7227 5.937540 CACACACCCAACTTCATCATAGTTA 59.062 40.000 0.00 0.00 34.22 2.24
6819 7228 4.761739 CACACACCCAACTTCATCATAGTT 59.238 41.667 0.00 0.00 36.31 2.24
6820 7229 4.326826 CACACACCCAACTTCATCATAGT 58.673 43.478 0.00 0.00 0.00 2.12
6821 7230 3.127548 GCACACACCCAACTTCATCATAG 59.872 47.826 0.00 0.00 0.00 2.23
6822 7231 3.081061 GCACACACCCAACTTCATCATA 58.919 45.455 0.00 0.00 0.00 2.15
6823 7232 1.888512 GCACACACCCAACTTCATCAT 59.111 47.619 0.00 0.00 0.00 2.45
6824 7233 1.133823 AGCACACACCCAACTTCATCA 60.134 47.619 0.00 0.00 0.00 3.07
6825 7234 1.537202 GAGCACACACCCAACTTCATC 59.463 52.381 0.00 0.00 0.00 2.92
6826 7235 1.133823 TGAGCACACACCCAACTTCAT 60.134 47.619 0.00 0.00 0.00 2.57
6827 7236 0.254462 TGAGCACACACCCAACTTCA 59.746 50.000 0.00 0.00 0.00 3.02
6828 7237 1.537202 GATGAGCACACACCCAACTTC 59.463 52.381 0.00 0.00 0.00 3.01
6829 7238 1.609208 GATGAGCACACACCCAACTT 58.391 50.000 0.00 0.00 0.00 2.66
6830 7239 0.603707 CGATGAGCACACACCCAACT 60.604 55.000 0.00 0.00 0.00 3.16
6831 7240 0.884704 ACGATGAGCACACACCCAAC 60.885 55.000 0.00 0.00 0.00 3.77
6832 7241 0.884259 CACGATGAGCACACACCCAA 60.884 55.000 0.00 0.00 0.00 4.12
6833 7242 1.301637 CACGATGAGCACACACCCA 60.302 57.895 0.00 0.00 0.00 4.51
6834 7243 1.301716 ACACGATGAGCACACACCC 60.302 57.895 0.00 0.00 0.00 4.61
6835 7244 0.880278 ACACACGATGAGCACACACC 60.880 55.000 0.00 0.00 0.00 4.16
6836 7245 1.778334 TACACACGATGAGCACACAC 58.222 50.000 0.00 0.00 0.00 3.82
6837 7246 2.741759 ATACACACGATGAGCACACA 57.258 45.000 0.00 0.00 0.00 3.72
6838 7247 3.254060 AGAATACACACGATGAGCACAC 58.746 45.455 0.00 0.00 0.00 3.82
6839 7248 3.193479 AGAGAATACACACGATGAGCACA 59.807 43.478 0.00 0.00 0.00 4.57
6840 7249 3.775202 AGAGAATACACACGATGAGCAC 58.225 45.455 0.00 0.00 0.00 4.40
6841 7250 3.487544 CGAGAGAATACACACGATGAGCA 60.488 47.826 0.00 0.00 0.00 4.26
6842 7251 3.039405 CGAGAGAATACACACGATGAGC 58.961 50.000 0.00 0.00 0.00 4.26
6843 7252 4.537936 TCGAGAGAATACACACGATGAG 57.462 45.455 0.00 0.00 37.03 2.90
6854 7263 7.041780 GGCTCAAAATAAAGCATCGAGAGAATA 60.042 37.037 0.00 0.00 40.36 1.75
6855 7264 6.238593 GGCTCAAAATAAAGCATCGAGAGAAT 60.239 38.462 0.00 0.00 40.36 2.40
6856 7265 5.065218 GGCTCAAAATAAAGCATCGAGAGAA 59.935 40.000 0.00 0.00 40.36 2.87
6857 7266 4.572389 GGCTCAAAATAAAGCATCGAGAGA 59.428 41.667 0.00 0.00 40.36 3.10
6858 7267 4.333649 TGGCTCAAAATAAAGCATCGAGAG 59.666 41.667 0.00 0.00 40.36 3.20
6859 7268 4.260985 TGGCTCAAAATAAAGCATCGAGA 58.739 39.130 0.00 0.00 40.36 4.04
6860 7269 4.621068 TGGCTCAAAATAAAGCATCGAG 57.379 40.909 0.00 0.00 40.36 4.04
6861 7270 5.581126 ATTGGCTCAAAATAAAGCATCGA 57.419 34.783 0.00 0.00 40.36 3.59
6862 7271 7.754069 TTTATTGGCTCAAAATAAAGCATCG 57.246 32.000 0.00 0.00 40.36 3.84
6891 7300 5.071653 ACCCCACTGCAAATTTGTTTTCTAT 59.928 36.000 19.03 0.00 0.00 1.98
6892 7301 4.407296 ACCCCACTGCAAATTTGTTTTCTA 59.593 37.500 19.03 0.00 0.00 2.10
6894 7303 3.540617 ACCCCACTGCAAATTTGTTTTC 58.459 40.909 19.03 3.53 0.00 2.29
6936 7376 5.246429 TCCCAAAAGTTACCAAACAAACTGT 59.754 36.000 0.00 0.00 38.12 3.55
6941 7381 5.069781 CCTCATCCCAAAAGTTACCAAACAA 59.930 40.000 0.00 0.00 38.12 2.83
6969 7409 7.510675 TTACAACTCCCTCATCTAAATTCCT 57.489 36.000 0.00 0.00 0.00 3.36
6980 7420 6.098409 GTCTAATCTCCATTACAACTCCCTCA 59.902 42.308 0.00 0.00 0.00 3.86
6984 7424 7.500992 TCATGTCTAATCTCCATTACAACTCC 58.499 38.462 0.00 0.00 0.00 3.85
6994 7434 9.739276 AATTACACTTTTCATGTCTAATCTCCA 57.261 29.630 0.00 0.00 0.00 3.86
7013 7453 7.791029 ACATGGGATTGGGAATAAAATTACAC 58.209 34.615 0.00 0.00 0.00 2.90
7023 7463 7.347748 TCAAATATCAAACATGGGATTGGGAAT 59.652 33.333 0.00 0.00 0.00 3.01
7024 7464 6.671340 TCAAATATCAAACATGGGATTGGGAA 59.329 34.615 0.00 0.00 0.00 3.97
7025 7465 6.200852 TCAAATATCAAACATGGGATTGGGA 58.799 36.000 0.00 0.00 0.00 4.37
7026 7466 6.482898 TCAAATATCAAACATGGGATTGGG 57.517 37.500 0.00 0.00 0.00 4.12
7027 7467 7.728148 TCATCAAATATCAAACATGGGATTGG 58.272 34.615 0.00 0.00 0.00 3.16
7028 7468 9.772973 ATTCATCAAATATCAAACATGGGATTG 57.227 29.630 0.00 0.00 0.00 2.67
7042 7482 9.567776 TTCCCACGTGTAATATTCATCAAATAT 57.432 29.630 15.65 0.00 41.41 1.28
7053 7493 5.522460 CGTCTCAAATTCCCACGTGTAATAT 59.478 40.000 15.65 0.00 0.00 1.28
7063 7503 4.301072 AAAGATCCGTCTCAAATTCCCA 57.699 40.909 0.00 0.00 32.15 4.37
7064 7504 6.017026 GGAATAAAGATCCGTCTCAAATTCCC 60.017 42.308 0.00 0.00 38.89 3.97
7067 7507 6.663734 AGGGAATAAAGATCCGTCTCAAATT 58.336 36.000 0.00 0.00 37.87 1.82
7076 7516 4.399303 AGCAAACAAGGGAATAAAGATCCG 59.601 41.667 0.00 0.00 37.87 4.18
7079 7519 7.093771 CCACTAAGCAAACAAGGGAATAAAGAT 60.094 37.037 0.00 0.00 0.00 2.40
7083 7523 4.770010 CCCACTAAGCAAACAAGGGAATAA 59.230 41.667 0.00 0.00 36.96 1.40
7085 7525 3.165071 CCCACTAAGCAAACAAGGGAAT 58.835 45.455 0.00 0.00 36.96 3.01
7107 7547 1.134226 CGGTTGTTTCGCTACGAGTT 58.866 50.000 0.00 0.00 37.14 3.01
7108 7548 0.311790 TCGGTTGTTTCGCTACGAGT 59.688 50.000 0.00 0.00 37.14 4.18
7109 7549 1.411394 TTCGGTTGTTTCGCTACGAG 58.589 50.000 0.00 0.00 37.14 4.18
7110 7550 1.788308 CTTTCGGTTGTTTCGCTACGA 59.212 47.619 0.00 0.00 0.00 3.43
7111 7551 1.788308 TCTTTCGGTTGTTTCGCTACG 59.212 47.619 0.00 0.00 0.00 3.51
7112 7552 4.400036 AATCTTTCGGTTGTTTCGCTAC 57.600 40.909 0.00 0.00 0.00 3.58
7113 7553 7.830940 TTATAATCTTTCGGTTGTTTCGCTA 57.169 32.000 0.00 0.00 0.00 4.26
7114 7554 6.730960 TTATAATCTTTCGGTTGTTTCGCT 57.269 33.333 0.00 0.00 0.00 4.93
7115 7555 6.797995 TGTTTATAATCTTTCGGTTGTTTCGC 59.202 34.615 0.00 0.00 0.00 4.70
7116 7556 8.889849 ATGTTTATAATCTTTCGGTTGTTTCG 57.110 30.769 0.00 0.00 0.00 3.46
7132 7572 9.941325 TCCTTTCACCGTAACTTATGTTTATAA 57.059 29.630 0.00 0.00 37.59 0.98
7133 7573 9.369904 GTCCTTTCACCGTAACTTATGTTTATA 57.630 33.333 0.00 0.00 37.59 0.98
7134 7574 7.063780 CGTCCTTTCACCGTAACTTATGTTTAT 59.936 37.037 0.00 0.00 37.59 1.40
7135 7575 6.365789 CGTCCTTTCACCGTAACTTATGTTTA 59.634 38.462 0.00 0.00 37.59 2.01
7136 7576 5.178067 CGTCCTTTCACCGTAACTTATGTTT 59.822 40.000 0.00 0.00 37.59 2.83
7137 7577 4.687483 CGTCCTTTCACCGTAACTTATGTT 59.313 41.667 0.00 0.00 39.98 2.71
7138 7578 4.022068 TCGTCCTTTCACCGTAACTTATGT 60.022 41.667 0.00 0.00 0.00 2.29
7139 7579 4.487948 TCGTCCTTTCACCGTAACTTATG 58.512 43.478 0.00 0.00 0.00 1.90
7140 7580 4.460382 TCTCGTCCTTTCACCGTAACTTAT 59.540 41.667 0.00 0.00 0.00 1.73
7141 7581 3.820467 TCTCGTCCTTTCACCGTAACTTA 59.180 43.478 0.00 0.00 0.00 2.24
7142 7582 2.624838 TCTCGTCCTTTCACCGTAACTT 59.375 45.455 0.00 0.00 0.00 2.66
7143 7583 2.233271 TCTCGTCCTTTCACCGTAACT 58.767 47.619 0.00 0.00 0.00 2.24
7144 7584 2.712057 TCTCGTCCTTTCACCGTAAC 57.288 50.000 0.00 0.00 0.00 2.50
7145 7585 2.559668 ACATCTCGTCCTTTCACCGTAA 59.440 45.455 0.00 0.00 0.00 3.18
7146 7586 2.165167 ACATCTCGTCCTTTCACCGTA 58.835 47.619 0.00 0.00 0.00 4.02
7147 7587 0.966920 ACATCTCGTCCTTTCACCGT 59.033 50.000 0.00 0.00 0.00 4.83
7148 7588 1.993370 GAACATCTCGTCCTTTCACCG 59.007 52.381 0.00 0.00 0.00 4.94
7149 7589 3.254892 GAGAACATCTCGTCCTTTCACC 58.745 50.000 0.00 0.00 33.35 4.02
7176 7616 9.539194 GGGATGAGAATTTATGAGGGAATTAAT 57.461 33.333 0.00 0.00 0.00 1.40
7177 7617 7.950124 GGGGATGAGAATTTATGAGGGAATTAA 59.050 37.037 0.00 0.00 0.00 1.40
7178 7618 7.298070 AGGGGATGAGAATTTATGAGGGAATTA 59.702 37.037 0.00 0.00 0.00 1.40
7179 7619 6.105289 AGGGGATGAGAATTTATGAGGGAATT 59.895 38.462 0.00 0.00 0.00 2.17
7180 7620 5.618717 AGGGGATGAGAATTTATGAGGGAAT 59.381 40.000 0.00 0.00 0.00 3.01
7181 7621 4.984268 AGGGGATGAGAATTTATGAGGGAA 59.016 41.667 0.00 0.00 0.00 3.97
7182 7622 4.581233 AGGGGATGAGAATTTATGAGGGA 58.419 43.478 0.00 0.00 0.00 4.20
7183 7623 4.263683 GGAGGGGATGAGAATTTATGAGGG 60.264 50.000 0.00 0.00 0.00 4.30
7184 7624 4.352001 TGGAGGGGATGAGAATTTATGAGG 59.648 45.833 0.00 0.00 0.00 3.86
7185 7625 5.573380 TGGAGGGGATGAGAATTTATGAG 57.427 43.478 0.00 0.00 0.00 2.90
7186 7626 5.691167 GCTTGGAGGGGATGAGAATTTATGA 60.691 44.000 0.00 0.00 0.00 2.15
7187 7627 4.522022 GCTTGGAGGGGATGAGAATTTATG 59.478 45.833 0.00 0.00 0.00 1.90
7188 7628 4.168675 TGCTTGGAGGGGATGAGAATTTAT 59.831 41.667 0.00 0.00 0.00 1.40
7189 7629 3.527253 TGCTTGGAGGGGATGAGAATTTA 59.473 43.478 0.00 0.00 0.00 1.40
7190 7630 2.312741 TGCTTGGAGGGGATGAGAATTT 59.687 45.455 0.00 0.00 0.00 1.82
7191 7631 1.925255 TGCTTGGAGGGGATGAGAATT 59.075 47.619 0.00 0.00 0.00 2.17
7192 7632 1.600058 TGCTTGGAGGGGATGAGAAT 58.400 50.000 0.00 0.00 0.00 2.40
7193 7633 1.371467 TTGCTTGGAGGGGATGAGAA 58.629 50.000 0.00 0.00 0.00 2.87
7194 7634 1.004745 GTTTGCTTGGAGGGGATGAGA 59.995 52.381 0.00 0.00 0.00 3.27
7195 7635 1.272092 TGTTTGCTTGGAGGGGATGAG 60.272 52.381 0.00 0.00 0.00 2.90
7196 7636 0.776810 TGTTTGCTTGGAGGGGATGA 59.223 50.000 0.00 0.00 0.00 2.92
7197 7637 1.180029 CTGTTTGCTTGGAGGGGATG 58.820 55.000 0.00 0.00 0.00 3.51
7198 7638 0.040204 CCTGTTTGCTTGGAGGGGAT 59.960 55.000 0.00 0.00 0.00 3.85
7199 7639 1.360393 ACCTGTTTGCTTGGAGGGGA 61.360 55.000 0.00 0.00 0.00 4.81
7200 7640 0.404040 TACCTGTTTGCTTGGAGGGG 59.596 55.000 0.00 0.00 0.00 4.79
7201 7641 2.162681 CTTACCTGTTTGCTTGGAGGG 58.837 52.381 0.00 0.00 0.00 4.30
7202 7642 2.814336 GTCTTACCTGTTTGCTTGGAGG 59.186 50.000 0.00 0.00 0.00 4.30
7203 7643 2.814336 GGTCTTACCTGTTTGCTTGGAG 59.186 50.000 0.00 0.00 34.73 3.86
7204 7644 2.173782 TGGTCTTACCTGTTTGCTTGGA 59.826 45.455 0.00 0.00 39.58 3.53
7205 7645 2.582052 TGGTCTTACCTGTTTGCTTGG 58.418 47.619 0.00 0.00 39.58 3.61
7206 7646 3.632145 AGTTGGTCTTACCTGTTTGCTTG 59.368 43.478 0.00 0.00 39.58 4.01
7207 7647 3.883489 GAGTTGGTCTTACCTGTTTGCTT 59.117 43.478 0.00 0.00 39.58 3.91
7208 7648 3.477530 GAGTTGGTCTTACCTGTTTGCT 58.522 45.455 0.00 0.00 39.58 3.91
7209 7649 2.552743 GGAGTTGGTCTTACCTGTTTGC 59.447 50.000 0.00 0.00 39.58 3.68
7210 7650 3.815809 TGGAGTTGGTCTTACCTGTTTG 58.184 45.455 0.00 0.00 39.58 2.93
7211 7651 4.513406 TTGGAGTTGGTCTTACCTGTTT 57.487 40.909 0.00 0.00 39.58 2.83
7212 7652 4.724279 ATTGGAGTTGGTCTTACCTGTT 57.276 40.909 0.00 0.00 39.58 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.