Multiple sequence alignment - TraesCS1D01G002000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G002000 chr1D 100.000 4269 0 0 1 4269 468326 472594 0.000000e+00 7884
1 TraesCS1D01G002000 chr1D 93.601 2516 137 15 1559 4065 627582 625082 0.000000e+00 3733
2 TraesCS1D01G002000 chr1D 86.646 2531 286 35 1568 4065 800117 797606 0.000000e+00 2754
3 TraesCS1D01G002000 chr1D 86.076 2528 288 48 1568 4065 896268 893775 0.000000e+00 2660
4 TraesCS1D01G002000 chr1D 93.878 1176 58 7 391 1557 628798 627628 0.000000e+00 1760
5 TraesCS1D01G002000 chr1D 100.000 622 0 0 4370 4991 472695 473316 0.000000e+00 1149
6 TraesCS1D01G002000 chr1D 96.469 623 21 1 4370 4991 493351 493973 0.000000e+00 1027
7 TraesCS1D01G002000 chr1D 93.939 330 19 1 3728 4057 725898 725570 9.650000e-137 497
8 TraesCS1D01G002000 chr1D 87.264 424 27 13 1 398 689542 689120 4.550000e-125 459
9 TraesCS1D01G002000 chr1D 86.098 410 53 4 900 1306 897236 896828 5.930000e-119 438
10 TraesCS1D01G002000 chr1D 89.062 256 24 3 1304 1557 896575 896322 1.040000e-81 315
11 TraesCS1D01G002000 chr1B 92.252 4027 237 44 46 4055 4815419 4811451 0.000000e+00 5638
12 TraesCS1D01G002000 chr1B 93.763 2918 142 22 1 2907 4524869 4521981 0.000000e+00 4344
13 TraesCS1D01G002000 chr1B 93.006 2645 134 22 1 2638 4204088 4206688 0.000000e+00 3812
14 TraesCS1D01G002000 chr1B 91.461 1417 93 14 2642 4055 4206954 4208345 0.000000e+00 1921
15 TraesCS1D01G002000 chr1B 86.041 1705 204 30 1572 3262 3576541 3574857 0.000000e+00 1799
16 TraesCS1D01G002000 chr1B 92.063 819 52 8 2916 3731 4521906 4521098 0.000000e+00 1140
17 TraesCS1D01G002000 chr1B 84.442 932 120 15 641 1557 3577519 3576598 0.000000e+00 894
18 TraesCS1D01G002000 chr1B 86.721 610 57 9 3475 4065 3574559 3573955 0.000000e+00 656
19 TraesCS1D01G002000 chr1B 93.985 133 8 0 1 133 4815546 4815414 8.470000e-48 202
20 TraesCS1D01G002000 chr1A 94.509 2513 123 11 1559 4065 3464982 3462479 0.000000e+00 3862
21 TraesCS1D01G002000 chr1A 86.297 2525 291 38 1575 4065 2848525 2851028 0.000000e+00 2695
22 TraesCS1D01G002000 chr1A 91.740 1586 91 16 1 1557 3466602 3465028 0.000000e+00 2167
23 TraesCS1D01G002000 chr1A 85.540 2047 226 48 1572 3592 2549935 2551937 0.000000e+00 2076
24 TraesCS1D01G002000 chr1A 96.141 622 23 1 4370 4991 3075823 3076443 0.000000e+00 1014
25 TraesCS1D01G002000 chr1A 95.659 622 25 1 4370 4991 3095433 3096052 0.000000e+00 998
26 TraesCS1D01G002000 chr1A 94.855 622 29 2 4370 4991 3021177 3021795 0.000000e+00 968
27 TraesCS1D01G002000 chr1A 84.086 842 122 9 718 1551 2549035 2549872 0.000000e+00 802
28 TraesCS1D01G002000 chr1A 82.529 933 134 20 641 1557 2847543 2848462 0.000000e+00 793
29 TraesCS1D01G002000 chrUn 100.000 622 0 0 4370 4991 303642457 303643078 0.000000e+00 1149
30 TraesCS1D01G002000 chr5A 83.806 741 103 15 3316 4053 470227029 470226303 0.000000e+00 688
31 TraesCS1D01G002000 chr5A 79.582 862 141 26 641 1484 470244570 470243726 7.200000e-163 584
32 TraesCS1D01G002000 chr5B 78.634 908 143 41 666 1544 436284901 436284016 5.650000e-154 555
33 TraesCS1D01G002000 chr2D 85.878 262 34 2 381 639 577686998 577686737 4.920000e-70 276
34 TraesCS1D01G002000 chr2D 85.156 256 35 2 380 632 627930707 627930452 4.960000e-65 259
35 TraesCS1D01G002000 chr7A 84.091 264 38 3 384 644 721109550 721109812 8.290000e-63 252
36 TraesCS1D01G002000 chr7B 84.038 213 31 3 381 590 641684176 641684388 8.470000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G002000 chr1D 468326 473316 4990 False 4516.500000 7884 100.000000 1 4991 2 chr1D.!!$F2 4990
1 TraesCS1D01G002000 chr1D 797606 800117 2511 True 2754.000000 2754 86.646000 1568 4065 1 chr1D.!!$R3 2497
2 TraesCS1D01G002000 chr1D 625082 628798 3716 True 2746.500000 3733 93.739500 391 4065 2 chr1D.!!$R4 3674
3 TraesCS1D01G002000 chr1D 893775 897236 3461 True 1137.666667 2660 87.078667 900 4065 3 chr1D.!!$R5 3165
4 TraesCS1D01G002000 chr1D 493351 493973 622 False 1027.000000 1027 96.469000 4370 4991 1 chr1D.!!$F1 621
5 TraesCS1D01G002000 chr1B 4811451 4815546 4095 True 2920.000000 5638 93.118500 1 4055 2 chr1B.!!$R3 4054
6 TraesCS1D01G002000 chr1B 4204088 4208345 4257 False 2866.500000 3812 92.233500 1 4055 2 chr1B.!!$F1 4054
7 TraesCS1D01G002000 chr1B 4521098 4524869 3771 True 2742.000000 4344 92.913000 1 3731 2 chr1B.!!$R2 3730
8 TraesCS1D01G002000 chr1B 3573955 3577519 3564 True 1116.333333 1799 85.734667 641 4065 3 chr1B.!!$R1 3424
9 TraesCS1D01G002000 chr1A 3462479 3466602 4123 True 3014.500000 3862 93.124500 1 4065 2 chr1A.!!$R1 4064
10 TraesCS1D01G002000 chr1A 2847543 2851028 3485 False 1744.000000 2695 84.413000 641 4065 2 chr1A.!!$F5 3424
11 TraesCS1D01G002000 chr1A 2549035 2551937 2902 False 1439.000000 2076 84.813000 718 3592 2 chr1A.!!$F4 2874
12 TraesCS1D01G002000 chr1A 3075823 3076443 620 False 1014.000000 1014 96.141000 4370 4991 1 chr1A.!!$F2 621
13 TraesCS1D01G002000 chr1A 3095433 3096052 619 False 998.000000 998 95.659000 4370 4991 1 chr1A.!!$F3 621
14 TraesCS1D01G002000 chr1A 3021177 3021795 618 False 968.000000 968 94.855000 4370 4991 1 chr1A.!!$F1 621
15 TraesCS1D01G002000 chrUn 303642457 303643078 621 False 1149.000000 1149 100.000000 4370 4991 1 chrUn.!!$F1 621
16 TraesCS1D01G002000 chr5A 470226303 470227029 726 True 688.000000 688 83.806000 3316 4053 1 chr5A.!!$R1 737
17 TraesCS1D01G002000 chr5A 470243726 470244570 844 True 584.000000 584 79.582000 641 1484 1 chr5A.!!$R2 843
18 TraesCS1D01G002000 chr5B 436284016 436284901 885 True 555.000000 555 78.634000 666 1544 1 chr5B.!!$R1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 2.093869 GTGTCGTGGCCCTAGATTGTAA 60.094 50.000 0.00 0.00 0.00 2.41 F
338 443 3.191371 GCTCCACACTTAAGGAACATTGG 59.809 47.826 7.53 4.04 32.57 3.16 F
2030 2503 0.108520 GCATGCATCACCACAAAGGG 60.109 55.000 14.21 0.00 43.89 3.95 F
2764 3510 0.947244 GTGCTACAACTTGCAGTGCT 59.053 50.000 17.60 0.00 40.06 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1852 1.066143 GGGGAGAGTGTGTGTACATGG 60.066 57.143 0.0 0.0 39.39 3.66 R
2037 2510 1.888512 GTGTGGTGTCAATCCAATGCT 59.111 47.619 0.0 0.0 36.68 3.79 R
3564 4548 7.119605 TGAACAATAAATTTCATGCACAAGC 57.880 32.000 0.0 0.0 42.57 4.01 R
4154 5167 0.035739 GAGGAGGTTTACACCCGCAA 59.964 55.000 0.0 0.0 45.63 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.093869 GTGTCGTGGCCCTAGATTGTAA 60.094 50.000 0.00 0.00 0.00 2.41
92 93 3.444703 CAAATGGGTTTTGTCAACGGA 57.555 42.857 0.00 0.00 39.93 4.69
121 122 9.449719 ACATATAGTATATTTTTGTAGCCAGGC 57.550 33.333 1.84 1.84 0.00 4.85
338 443 3.191371 GCTCCACACTTAAGGAACATTGG 59.809 47.826 7.53 4.04 32.57 3.16
432 541 7.996644 GTCTTATTTGTCCCCCATGTAATCTAA 59.003 37.037 0.00 0.00 0.00 2.10
618 731 3.543680 TCCTATGTGGCACTTCTAAGC 57.456 47.619 19.83 0.00 35.26 3.09
852 972 6.317642 CGGATGACTACCCATTAAATGTTCAA 59.682 38.462 0.00 0.00 0.00 2.69
880 1000 7.916977 GCATGATCAGTACAATGCAATCTAAAA 59.083 33.333 11.00 0.00 35.35 1.52
1397 1797 5.163237 ACACCACTCTTTTAAGACCTAAGCA 60.163 40.000 0.00 0.00 0.00 3.91
1452 1852 2.687935 TGAAGGAAGCGGCATTATTTCC 59.312 45.455 9.29 9.29 39.47 3.13
1536 1948 7.733402 AGATTTGGGATGTTTTGTTGATTTG 57.267 32.000 0.00 0.00 0.00 2.32
1566 2025 2.294233 TGTTGATCACAAGAGGCAAAGC 59.706 45.455 0.00 0.00 36.64 3.51
1695 2159 1.341383 GGTCAATGGCCCAAGAGACAT 60.341 52.381 13.36 0.00 0.00 3.06
1946 2414 1.217057 ACCCATGCCACAAGGAGGAT 61.217 55.000 0.00 0.00 36.89 3.24
1956 2427 4.384647 GCCACAAGGAGGATAGAAGATGTT 60.385 45.833 0.00 0.00 36.89 2.71
1957 2428 5.121811 CCACAAGGAGGATAGAAGATGTTG 58.878 45.833 0.00 0.00 36.89 3.33
1958 2429 5.338708 CCACAAGGAGGATAGAAGATGTTGT 60.339 44.000 0.00 0.00 36.89 3.32
1959 2430 6.176183 CACAAGGAGGATAGAAGATGTTGTT 58.824 40.000 0.00 0.00 0.00 2.83
1968 2439 4.640771 AGAAGATGTTGTTAGCCCAAGA 57.359 40.909 0.00 0.00 0.00 3.02
2008 2479 5.048782 TCGAAAATGCACATGAACTAAAGCT 60.049 36.000 0.00 0.00 0.00 3.74
2030 2503 0.108520 GCATGCATCACCACAAAGGG 60.109 55.000 14.21 0.00 43.89 3.95
2037 2510 4.018870 TGCATCACCACAAAGGGTCTAATA 60.019 41.667 0.00 0.00 43.89 0.98
2142 2617 7.271511 AGACTAACTCCAAGATAGCATGAAAG 58.728 38.462 0.00 0.00 0.00 2.62
2224 2701 6.455113 CCCTCACTTGTTTATTATGTCGTTCG 60.455 42.308 0.00 0.00 0.00 3.95
2238 2715 5.961395 TGTCGTTCGCTATAGATTTTTCC 57.039 39.130 3.21 0.00 0.00 3.13
2674 3418 6.879400 AGAGGCACTATTGGACTAAGTAAAG 58.121 40.000 0.00 0.00 41.55 1.85
2737 3483 3.627577 TGTTGCTCAGAAGGACTTGAAAC 59.372 43.478 0.00 0.00 0.00 2.78
2764 3510 0.947244 GTGCTACAACTTGCAGTGCT 59.053 50.000 17.60 0.00 40.06 4.40
2908 3654 9.397280 TGTCCCATTCTAGAGATTACTATATCG 57.603 37.037 0.00 0.00 0.00 2.92
2978 3791 1.574702 GCACGTTCCTGCAGTAACCC 61.575 60.000 15.65 2.14 37.11 4.11
2982 3795 1.613255 CGTTCCTGCAGTAACCCCATT 60.613 52.381 15.65 0.00 0.00 3.16
3300 4132 7.129622 TGCACACATAGAAAGAAAAGTAAACG 58.870 34.615 0.00 0.00 0.00 3.60
3364 4201 8.107095 TGCTTGAATAGGAAAAATAGGTAGTGT 58.893 33.333 0.00 0.00 0.00 3.55
3555 4539 8.081633 TCTTGCTAATAACAACATGTTTTCTGG 58.918 33.333 8.77 0.00 41.45 3.86
3556 4540 7.517614 TGCTAATAACAACATGTTTTCTGGA 57.482 32.000 8.77 0.00 41.45 3.86
3557 4541 7.592938 TGCTAATAACAACATGTTTTCTGGAG 58.407 34.615 8.77 4.31 41.45 3.86
3564 4548 5.760253 ACAACATGTTTTCTGGAGTACTCTG 59.240 40.000 21.88 14.82 0.00 3.35
4026 5033 8.715191 TGTATTGCCATTTGGATTCAATAAAC 57.285 30.769 0.00 0.00 32.98 2.01
4067 5080 7.617041 AATGGTCAAAGACTATCACTTAAGC 57.383 36.000 1.29 0.00 32.73 3.09
4068 5081 5.488341 TGGTCAAAGACTATCACTTAAGCC 58.512 41.667 1.29 0.00 32.47 4.35
4069 5082 5.012664 TGGTCAAAGACTATCACTTAAGCCA 59.987 40.000 1.29 0.00 32.47 4.75
4070 5083 6.116126 GGTCAAAGACTATCACTTAAGCCAT 58.884 40.000 1.29 0.00 32.47 4.40
4071 5084 6.599638 GGTCAAAGACTATCACTTAAGCCATT 59.400 38.462 1.29 0.00 32.47 3.16
4072 5085 7.201652 GGTCAAAGACTATCACTTAAGCCATTC 60.202 40.741 1.29 0.00 32.47 2.67
4073 5086 6.823689 TCAAAGACTATCACTTAAGCCATTCC 59.176 38.462 1.29 0.00 0.00 3.01
4074 5087 5.297569 AGACTATCACTTAAGCCATTCCC 57.702 43.478 1.29 0.00 0.00 3.97
4075 5088 4.721776 AGACTATCACTTAAGCCATTCCCA 59.278 41.667 1.29 0.00 0.00 4.37
4076 5089 5.191722 AGACTATCACTTAAGCCATTCCCAA 59.808 40.000 1.29 0.00 0.00 4.12
4077 5090 5.193679 ACTATCACTTAAGCCATTCCCAAC 58.806 41.667 1.29 0.00 0.00 3.77
4078 5091 3.517296 TCACTTAAGCCATTCCCAACA 57.483 42.857 1.29 0.00 0.00 3.33
4079 5092 3.153919 TCACTTAAGCCATTCCCAACAC 58.846 45.455 1.29 0.00 0.00 3.32
4080 5093 2.095263 CACTTAAGCCATTCCCAACACG 60.095 50.000 1.29 0.00 0.00 4.49
4081 5094 2.159382 CTTAAGCCATTCCCAACACGT 58.841 47.619 0.00 0.00 0.00 4.49
4082 5095 1.529226 TAAGCCATTCCCAACACGTG 58.471 50.000 15.48 15.48 0.00 4.49
4083 5096 1.805428 AAGCCATTCCCAACACGTGC 61.805 55.000 17.22 0.00 0.00 5.34
4084 5097 2.560861 CCATTCCCAACACGTGCG 59.439 61.111 17.22 7.06 0.00 5.34
4085 5098 2.560861 CATTCCCAACACGTGCGG 59.439 61.111 17.22 16.47 0.00 5.69
4086 5099 2.112297 ATTCCCAACACGTGCGGT 59.888 55.556 17.22 0.00 0.00 5.68
4087 5100 1.527380 ATTCCCAACACGTGCGGTT 60.527 52.632 17.22 0.00 0.00 4.44
4088 5101 1.791103 ATTCCCAACACGTGCGGTTG 61.791 55.000 17.22 12.77 43.99 3.77
4089 5102 3.206246 CCCAACACGTGCGGTTGT 61.206 61.111 17.22 0.00 43.10 3.32
4090 5103 2.024022 CCAACACGTGCGGTTGTG 59.976 61.111 17.22 4.33 43.10 3.33
4091 5104 2.465299 CCAACACGTGCGGTTGTGA 61.465 57.895 17.22 0.00 43.10 3.58
4092 5105 1.297304 CAACACGTGCGGTTGTGAC 60.297 57.895 17.22 0.00 40.48 3.67
4093 5106 2.804759 AACACGTGCGGTTGTGACG 61.805 57.895 17.22 0.00 39.38 4.35
4094 5107 3.995669 CACGTGCGGTTGTGACGG 61.996 66.667 0.82 0.00 38.36 4.79
4097 5110 4.612412 GTGCGGTTGTGACGGGGA 62.612 66.667 0.00 0.00 0.00 4.81
4098 5111 4.308458 TGCGGTTGTGACGGGGAG 62.308 66.667 0.00 0.00 0.00 4.30
4100 5113 4.003788 CGGTTGTGACGGGGAGCT 62.004 66.667 0.00 0.00 0.00 4.09
4101 5114 2.642254 CGGTTGTGACGGGGAGCTA 61.642 63.158 0.00 0.00 0.00 3.32
4102 5115 1.218316 GGTTGTGACGGGGAGCTAG 59.782 63.158 0.00 0.00 0.00 3.42
4103 5116 1.218316 GTTGTGACGGGGAGCTAGG 59.782 63.158 0.00 0.00 0.00 3.02
4104 5117 1.229082 TTGTGACGGGGAGCTAGGT 60.229 57.895 0.00 0.00 0.00 3.08
4105 5118 0.040058 TTGTGACGGGGAGCTAGGTA 59.960 55.000 0.00 0.00 0.00 3.08
4106 5119 0.040058 TGTGACGGGGAGCTAGGTAA 59.960 55.000 0.00 0.00 0.00 2.85
4107 5120 1.342674 TGTGACGGGGAGCTAGGTAAT 60.343 52.381 0.00 0.00 0.00 1.89
4108 5121 1.761198 GTGACGGGGAGCTAGGTAATT 59.239 52.381 0.00 0.00 0.00 1.40
4109 5122 2.037144 TGACGGGGAGCTAGGTAATTC 58.963 52.381 0.00 0.00 0.00 2.17
4110 5123 2.037144 GACGGGGAGCTAGGTAATTCA 58.963 52.381 0.00 0.00 0.00 2.57
4111 5124 2.633481 GACGGGGAGCTAGGTAATTCAT 59.367 50.000 0.00 0.00 0.00 2.57
4112 5125 2.368875 ACGGGGAGCTAGGTAATTCATG 59.631 50.000 0.00 0.00 0.00 3.07
4113 5126 2.368875 CGGGGAGCTAGGTAATTCATGT 59.631 50.000 0.00 0.00 0.00 3.21
4114 5127 3.181454 CGGGGAGCTAGGTAATTCATGTT 60.181 47.826 0.00 0.00 0.00 2.71
4115 5128 4.686122 CGGGGAGCTAGGTAATTCATGTTT 60.686 45.833 0.00 0.00 0.00 2.83
4116 5129 5.454187 CGGGGAGCTAGGTAATTCATGTTTA 60.454 44.000 0.00 0.00 0.00 2.01
4117 5130 6.362248 GGGGAGCTAGGTAATTCATGTTTAA 58.638 40.000 0.00 0.00 0.00 1.52
4118 5131 6.486993 GGGGAGCTAGGTAATTCATGTTTAAG 59.513 42.308 0.00 0.00 0.00 1.85
4119 5132 7.054751 GGGAGCTAGGTAATTCATGTTTAAGT 58.945 38.462 0.00 0.00 0.00 2.24
4120 5133 8.208903 GGGAGCTAGGTAATTCATGTTTAAGTA 58.791 37.037 0.00 0.00 0.00 2.24
4121 5134 9.609346 GGAGCTAGGTAATTCATGTTTAAGTAA 57.391 33.333 0.00 0.00 0.00 2.24
4158 5171 4.383774 TTCAAACGACTGATTACTTGCG 57.616 40.909 0.00 0.00 0.00 4.85
4159 5172 2.734606 TCAAACGACTGATTACTTGCGG 59.265 45.455 0.00 0.00 0.00 5.69
4160 5173 1.722011 AACGACTGATTACTTGCGGG 58.278 50.000 0.00 0.00 0.00 6.13
4161 5174 0.606604 ACGACTGATTACTTGCGGGT 59.393 50.000 0.00 0.00 0.00 5.28
4162 5175 0.999406 CGACTGATTACTTGCGGGTG 59.001 55.000 0.00 0.00 0.00 4.61
4163 5176 1.671850 CGACTGATTACTTGCGGGTGT 60.672 52.381 0.00 0.00 0.00 4.16
4164 5177 2.416296 CGACTGATTACTTGCGGGTGTA 60.416 50.000 0.00 0.00 0.00 2.90
4165 5178 3.592059 GACTGATTACTTGCGGGTGTAA 58.408 45.455 0.00 0.00 33.87 2.41
4166 5179 3.998341 GACTGATTACTTGCGGGTGTAAA 59.002 43.478 0.00 0.00 33.21 2.01
4167 5180 3.749609 ACTGATTACTTGCGGGTGTAAAC 59.250 43.478 0.00 0.00 33.21 2.01
4168 5181 3.075884 TGATTACTTGCGGGTGTAAACC 58.924 45.455 0.00 0.00 33.21 3.27
4169 5182 2.934886 TTACTTGCGGGTGTAAACCT 57.065 45.000 1.05 0.00 0.00 3.50
4170 5183 2.460757 TACTTGCGGGTGTAAACCTC 57.539 50.000 1.05 0.00 0.00 3.85
4171 5184 0.250597 ACTTGCGGGTGTAAACCTCC 60.251 55.000 1.05 0.00 0.00 4.30
4172 5185 0.036306 CTTGCGGGTGTAAACCTCCT 59.964 55.000 1.05 0.00 0.00 3.69
4173 5186 0.035739 TTGCGGGTGTAAACCTCCTC 59.964 55.000 1.05 0.00 0.00 3.71
4174 5187 1.078637 GCGGGTGTAAACCTCCTCC 60.079 63.158 1.05 0.00 0.00 4.30
4175 5188 1.217244 CGGGTGTAAACCTCCTCCG 59.783 63.158 1.05 0.00 0.00 4.63
4176 5189 1.252904 CGGGTGTAAACCTCCTCCGA 61.253 60.000 1.05 0.00 38.42 4.55
4177 5190 0.248565 GGGTGTAAACCTCCTCCGAC 59.751 60.000 1.05 0.00 0.00 4.79
4178 5191 0.108945 GGTGTAAACCTCCTCCGACG 60.109 60.000 0.00 0.00 0.00 5.12
4179 5192 0.735287 GTGTAAACCTCCTCCGACGC 60.735 60.000 0.00 0.00 0.00 5.19
4180 5193 1.153686 GTAAACCTCCTCCGACGCC 60.154 63.158 0.00 0.00 0.00 5.68
4181 5194 2.353610 TAAACCTCCTCCGACGCCC 61.354 63.158 0.00 0.00 0.00 6.13
4199 5212 3.845259 GCCACGCGTCCCTATGGA 61.845 66.667 9.86 0.00 38.75 3.41
4210 5223 2.662866 TCCCTATGGACCTACTCAACG 58.337 52.381 0.00 0.00 35.03 4.10
4211 5224 2.024655 TCCCTATGGACCTACTCAACGT 60.025 50.000 0.00 0.00 35.03 3.99
4212 5225 2.764572 CCCTATGGACCTACTCAACGTT 59.235 50.000 0.00 0.00 0.00 3.99
4213 5226 3.197116 CCCTATGGACCTACTCAACGTTT 59.803 47.826 0.00 0.00 0.00 3.60
4214 5227 4.403432 CCCTATGGACCTACTCAACGTTTA 59.597 45.833 0.00 0.00 0.00 2.01
4215 5228 5.070047 CCCTATGGACCTACTCAACGTTTAT 59.930 44.000 0.00 0.00 0.00 1.40
4216 5229 6.214399 CCTATGGACCTACTCAACGTTTATC 58.786 44.000 0.00 0.00 0.00 1.75
4217 5230 4.460948 TGGACCTACTCAACGTTTATCC 57.539 45.455 0.00 0.00 0.00 2.59
4218 5231 3.833650 TGGACCTACTCAACGTTTATCCA 59.166 43.478 0.00 0.00 0.00 3.41
4219 5232 4.468510 TGGACCTACTCAACGTTTATCCAT 59.531 41.667 0.00 0.00 0.00 3.41
4220 5233 5.048507 GGACCTACTCAACGTTTATCCATC 58.951 45.833 0.00 0.00 0.00 3.51
4221 5234 5.163437 GGACCTACTCAACGTTTATCCATCT 60.163 44.000 0.00 0.00 0.00 2.90
4222 5235 5.661458 ACCTACTCAACGTTTATCCATCTG 58.339 41.667 0.00 0.00 0.00 2.90
4223 5236 4.508124 CCTACTCAACGTTTATCCATCTGC 59.492 45.833 0.00 0.00 0.00 4.26
4224 5237 3.270877 ACTCAACGTTTATCCATCTGCC 58.729 45.455 0.00 0.00 0.00 4.85
4225 5238 3.270027 CTCAACGTTTATCCATCTGCCA 58.730 45.455 0.00 0.00 0.00 4.92
4226 5239 3.006940 TCAACGTTTATCCATCTGCCAC 58.993 45.455 0.00 0.00 0.00 5.01
4227 5240 2.038387 ACGTTTATCCATCTGCCACC 57.962 50.000 0.00 0.00 0.00 4.61
4228 5241 1.308998 CGTTTATCCATCTGCCACCC 58.691 55.000 0.00 0.00 0.00 4.61
4229 5242 1.134098 CGTTTATCCATCTGCCACCCT 60.134 52.381 0.00 0.00 0.00 4.34
4230 5243 2.683742 CGTTTATCCATCTGCCACCCTT 60.684 50.000 0.00 0.00 0.00 3.95
4231 5244 3.433031 CGTTTATCCATCTGCCACCCTTA 60.433 47.826 0.00 0.00 0.00 2.69
4232 5245 4.729868 GTTTATCCATCTGCCACCCTTAT 58.270 43.478 0.00 0.00 0.00 1.73
4233 5246 4.640771 TTATCCATCTGCCACCCTTATC 57.359 45.455 0.00 0.00 0.00 1.75
4234 5247 2.196742 TCCATCTGCCACCCTTATCT 57.803 50.000 0.00 0.00 0.00 1.98
4235 5248 2.050144 TCCATCTGCCACCCTTATCTC 58.950 52.381 0.00 0.00 0.00 2.75
4236 5249 2.053244 CCATCTGCCACCCTTATCTCT 58.947 52.381 0.00 0.00 0.00 3.10
4237 5250 2.441001 CCATCTGCCACCCTTATCTCTT 59.559 50.000 0.00 0.00 0.00 2.85
4238 5251 3.495806 CCATCTGCCACCCTTATCTCTTC 60.496 52.174 0.00 0.00 0.00 2.87
4239 5252 3.121929 TCTGCCACCCTTATCTCTTCT 57.878 47.619 0.00 0.00 0.00 2.85
4240 5253 3.454858 TCTGCCACCCTTATCTCTTCTT 58.545 45.455 0.00 0.00 0.00 2.52
4241 5254 3.452627 TCTGCCACCCTTATCTCTTCTTC 59.547 47.826 0.00 0.00 0.00 2.87
4242 5255 3.454082 CTGCCACCCTTATCTCTTCTTCT 59.546 47.826 0.00 0.00 0.00 2.85
4243 5256 4.620723 TGCCACCCTTATCTCTTCTTCTA 58.379 43.478 0.00 0.00 0.00 2.10
4244 5257 4.406003 TGCCACCCTTATCTCTTCTTCTAC 59.594 45.833 0.00 0.00 0.00 2.59
4245 5258 4.500035 GCCACCCTTATCTCTTCTTCTACG 60.500 50.000 0.00 0.00 0.00 3.51
4246 5259 4.500035 CCACCCTTATCTCTTCTTCTACGC 60.500 50.000 0.00 0.00 0.00 4.42
4247 5260 3.315749 ACCCTTATCTCTTCTTCTACGCG 59.684 47.826 3.53 3.53 0.00 6.01
4248 5261 3.301706 CCTTATCTCTTCTTCTACGCGC 58.698 50.000 5.73 0.00 0.00 6.86
4249 5262 3.301706 CTTATCTCTTCTTCTACGCGCC 58.698 50.000 5.73 0.00 0.00 6.53
4250 5263 0.386113 ATCTCTTCTTCTACGCGCCC 59.614 55.000 5.73 0.00 0.00 6.13
4251 5264 1.586564 CTCTTCTTCTACGCGCCCG 60.587 63.158 5.73 0.00 41.14 6.13
4252 5265 1.989966 CTCTTCTTCTACGCGCCCGA 61.990 60.000 5.73 0.00 38.29 5.14
4253 5266 1.153901 CTTCTTCTACGCGCCCGAA 60.154 57.895 5.73 5.53 38.29 4.30
4254 5267 1.411493 CTTCTTCTACGCGCCCGAAC 61.411 60.000 5.73 0.00 38.29 3.95
4255 5268 2.824071 TTCTTCTACGCGCCCGAACC 62.824 60.000 5.73 0.00 38.29 3.62
4256 5269 3.636313 CTTCTACGCGCCCGAACCA 62.636 63.158 5.73 0.00 38.29 3.67
4257 5270 3.919973 TTCTACGCGCCCGAACCAC 62.920 63.158 5.73 0.00 38.29 4.16
4258 5271 4.430765 CTACGCGCCCGAACCACT 62.431 66.667 5.73 0.00 38.29 4.00
4259 5272 4.424566 TACGCGCCCGAACCACTC 62.425 66.667 5.73 0.00 38.29 3.51
4262 5275 2.668550 GCGCCCGAACCACTCTTT 60.669 61.111 0.00 0.00 0.00 2.52
4263 5276 2.258726 GCGCCCGAACCACTCTTTT 61.259 57.895 0.00 0.00 0.00 2.27
4264 5277 1.792118 GCGCCCGAACCACTCTTTTT 61.792 55.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.777850 TTCATCATTCGCCATTCATTGAT 57.222 34.783 0.00 0.00 0.00 2.57
121 122 1.133575 AGACATGGGATCATTGGCTGG 60.134 52.381 0.00 0.00 0.00 4.85
161 243 2.831565 TGCAGGGAAATTGGGCTAATT 58.168 42.857 2.64 2.64 40.67 1.40
413 519 6.216662 TCTTCTTTAGATTACATGGGGGACAA 59.783 38.462 0.00 0.00 0.00 3.18
618 731 6.114187 TGAGGGCATATACAATGGTCTTAG 57.886 41.667 0.00 0.00 0.00 2.18
806 926 6.817184 TCCGGTGAAATAATCTTTCTAGAGG 58.183 40.000 0.00 0.00 32.92 3.69
821 941 1.646912 TGGGTAGTCATCCGGTGAAA 58.353 50.000 0.00 0.00 38.90 2.69
852 972 5.535030 AGATTGCATTGTACTGATCATGCAT 59.465 36.000 17.54 9.67 43.32 3.96
982 1107 6.016276 CCTCCCATTTGTATAGGTAATTGTGC 60.016 42.308 0.00 0.00 0.00 4.57
1397 1797 4.681484 AGCTCTCCAAGGAAAATGGAAAT 58.319 39.130 0.00 0.00 45.96 2.17
1452 1852 1.066143 GGGGAGAGTGTGTGTACATGG 60.066 57.143 0.00 0.00 39.39 3.66
1772 2237 8.616076 GGTAGCATGCTTTATATGTAATGATCC 58.384 37.037 28.02 3.67 0.00 3.36
1785 2250 6.149640 TCACGTTATTTTGGTAGCATGCTTTA 59.850 34.615 28.02 5.63 0.00 1.85
1848 2314 6.077993 TGGTATGTCAGCATAAGTCTCCTAT 58.922 40.000 0.00 0.00 39.09 2.57
1849 2315 5.454966 TGGTATGTCAGCATAAGTCTCCTA 58.545 41.667 0.00 0.00 39.09 2.94
1946 2414 5.755409 TCTTGGGCTAACAACATCTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
1956 2427 5.544948 TCTTACTTAGGTTCTTGGGCTAACA 59.455 40.000 0.00 0.00 0.00 2.41
1957 2428 5.873712 GTCTTACTTAGGTTCTTGGGCTAAC 59.126 44.000 0.00 0.00 0.00 2.34
1958 2429 5.046087 GGTCTTACTTAGGTTCTTGGGCTAA 60.046 44.000 0.00 0.00 0.00 3.09
1959 2430 4.468868 GGTCTTACTTAGGTTCTTGGGCTA 59.531 45.833 0.00 0.00 0.00 3.93
1968 2439 6.093633 GCATTTTCGATGGTCTTACTTAGGTT 59.906 38.462 0.00 0.00 0.00 3.50
2008 2479 2.548280 CCTTTGTGGTGATGCATGCAAA 60.548 45.455 26.68 13.68 0.00 3.68
2030 2503 5.822519 TGGTGTCAATCCAATGCTATTAGAC 59.177 40.000 0.00 0.00 31.50 2.59
2037 2510 1.888512 GTGTGGTGTCAATCCAATGCT 59.111 47.619 0.00 0.00 36.68 3.79
2142 2617 4.956075 ACCAGACATTTACAATGGGGAATC 59.044 41.667 9.66 0.00 35.26 2.52
2509 2989 1.376649 AGAGGGGGAAATCTGCAAGT 58.623 50.000 0.00 0.00 33.76 3.16
2674 3418 8.958119 TGTATTATTGTGGATGTAAAGAGACC 57.042 34.615 0.00 0.00 0.00 3.85
2737 3483 0.036306 AAGTTGTAGCACCCCTTCGG 59.964 55.000 0.00 0.00 37.81 4.30
2764 3510 3.250762 CGACTTGCAGAAACAAATCCTGA 59.749 43.478 0.00 0.00 0.00 3.86
2937 3749 8.817100 CGTGCATGTTTCATCTAGTTATAGAAA 58.183 33.333 0.00 0.00 41.36 2.52
2939 3751 7.489160 ACGTGCATGTTTCATCTAGTTATAGA 58.511 34.615 5.51 0.00 42.22 1.98
3564 4548 7.119605 TGAACAATAAATTTCATGCACAAGC 57.880 32.000 0.00 0.00 42.57 4.01
4057 5070 3.763897 GTGTTGGGAATGGCTTAAGTGAT 59.236 43.478 4.02 0.00 0.00 3.06
4060 5073 2.159382 CGTGTTGGGAATGGCTTAAGT 58.841 47.619 4.02 0.00 0.00 2.24
4065 5078 2.268076 GCACGTGTTGGGAATGGCT 61.268 57.895 18.38 0.00 0.00 4.75
4066 5079 2.258286 GCACGTGTTGGGAATGGC 59.742 61.111 18.38 0.00 0.00 4.40
4067 5080 2.560861 CGCACGTGTTGGGAATGG 59.439 61.111 18.38 0.00 40.70 3.16
4068 5081 1.791103 AACCGCACGTGTTGGGAATG 61.791 55.000 25.89 7.47 40.70 2.67
4069 5082 1.527380 AACCGCACGTGTTGGGAAT 60.527 52.632 25.89 13.37 40.70 3.01
4070 5083 2.124653 AACCGCACGTGTTGGGAA 60.125 55.556 25.89 0.00 40.70 3.97
4071 5084 2.897846 CAACCGCACGTGTTGGGA 60.898 61.111 25.89 0.00 40.70 4.37
4072 5085 3.206246 ACAACCGCACGTGTTGGG 61.206 61.111 25.89 21.67 45.72 4.12
4073 5086 2.024022 CACAACCGCACGTGTTGG 59.976 61.111 22.36 22.36 45.72 3.77
4074 5087 1.297304 GTCACAACCGCACGTGTTG 60.297 57.895 18.38 15.82 46.60 3.33
4075 5088 2.804759 CGTCACAACCGCACGTGTT 61.805 57.895 18.38 0.00 34.66 3.32
4076 5089 3.259020 CGTCACAACCGCACGTGT 61.259 61.111 18.38 0.00 34.66 4.49
4077 5090 3.995669 CCGTCACAACCGCACGTG 61.996 66.667 12.28 12.28 34.34 4.49
4080 5093 4.612412 TCCCCGTCACAACCGCAC 62.612 66.667 0.00 0.00 0.00 5.34
4081 5094 4.308458 CTCCCCGTCACAACCGCA 62.308 66.667 0.00 0.00 0.00 5.69
4083 5096 2.558554 CTAGCTCCCCGTCACAACCG 62.559 65.000 0.00 0.00 0.00 4.44
4084 5097 1.218316 CTAGCTCCCCGTCACAACC 59.782 63.158 0.00 0.00 0.00 3.77
4085 5098 1.218316 CCTAGCTCCCCGTCACAAC 59.782 63.158 0.00 0.00 0.00 3.32
4086 5099 0.040058 TACCTAGCTCCCCGTCACAA 59.960 55.000 0.00 0.00 0.00 3.33
4087 5100 0.040058 TTACCTAGCTCCCCGTCACA 59.960 55.000 0.00 0.00 0.00 3.58
4088 5101 1.411041 ATTACCTAGCTCCCCGTCAC 58.589 55.000 0.00 0.00 0.00 3.67
4089 5102 2.037144 GAATTACCTAGCTCCCCGTCA 58.963 52.381 0.00 0.00 0.00 4.35
4090 5103 2.037144 TGAATTACCTAGCTCCCCGTC 58.963 52.381 0.00 0.00 0.00 4.79
4091 5104 2.170012 TGAATTACCTAGCTCCCCGT 57.830 50.000 0.00 0.00 0.00 5.28
4092 5105 2.368875 ACATGAATTACCTAGCTCCCCG 59.631 50.000 0.00 0.00 0.00 5.73
4093 5106 4.439253 AACATGAATTACCTAGCTCCCC 57.561 45.455 0.00 0.00 0.00 4.81
4094 5107 7.054751 ACTTAAACATGAATTACCTAGCTCCC 58.945 38.462 0.00 0.00 0.00 4.30
4095 5108 9.609346 TTACTTAAACATGAATTACCTAGCTCC 57.391 33.333 0.00 0.00 0.00 4.70
4132 5145 8.325282 CGCAAGTAATCAGTCGTTTGAATATAA 58.675 33.333 0.00 0.00 0.00 0.98
4133 5146 7.042992 CCGCAAGTAATCAGTCGTTTGAATATA 60.043 37.037 0.00 0.00 0.00 0.86
4134 5147 6.238103 CCGCAAGTAATCAGTCGTTTGAATAT 60.238 38.462 0.00 0.00 0.00 1.28
4135 5148 5.062934 CCGCAAGTAATCAGTCGTTTGAATA 59.937 40.000 0.00 0.00 0.00 1.75
4136 5149 4.142902 CCGCAAGTAATCAGTCGTTTGAAT 60.143 41.667 0.00 0.00 0.00 2.57
4137 5150 3.185594 CCGCAAGTAATCAGTCGTTTGAA 59.814 43.478 0.00 0.00 0.00 2.69
4138 5151 2.734606 CCGCAAGTAATCAGTCGTTTGA 59.265 45.455 0.00 0.00 0.00 2.69
4139 5152 2.159707 CCCGCAAGTAATCAGTCGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
4140 5153 2.073816 CCCGCAAGTAATCAGTCGTTT 58.926 47.619 0.00 0.00 0.00 3.60
4141 5154 1.001633 ACCCGCAAGTAATCAGTCGTT 59.998 47.619 0.00 0.00 0.00 3.85
4142 5155 0.606604 ACCCGCAAGTAATCAGTCGT 59.393 50.000 0.00 0.00 0.00 4.34
4143 5156 0.999406 CACCCGCAAGTAATCAGTCG 59.001 55.000 0.00 0.00 0.00 4.18
4144 5157 2.094762 ACACCCGCAAGTAATCAGTC 57.905 50.000 0.00 0.00 0.00 3.51
4145 5158 3.688694 TTACACCCGCAAGTAATCAGT 57.311 42.857 0.00 0.00 0.00 3.41
4146 5159 3.126343 GGTTTACACCCGCAAGTAATCAG 59.874 47.826 0.00 0.00 37.03 2.90
4147 5160 3.075884 GGTTTACACCCGCAAGTAATCA 58.924 45.455 0.00 0.00 37.03 2.57
4148 5161 3.340928 AGGTTTACACCCGCAAGTAATC 58.659 45.455 0.00 0.00 45.63 1.75
4149 5162 3.340928 GAGGTTTACACCCGCAAGTAAT 58.659 45.455 0.00 0.00 45.63 1.89
4150 5163 2.550639 GGAGGTTTACACCCGCAAGTAA 60.551 50.000 0.00 0.00 45.63 2.24
4151 5164 1.002315 GGAGGTTTACACCCGCAAGTA 59.998 52.381 0.00 0.00 45.63 2.24
4152 5165 0.250597 GGAGGTTTACACCCGCAAGT 60.251 55.000 0.00 0.00 45.63 3.16
4153 5166 0.036306 AGGAGGTTTACACCCGCAAG 59.964 55.000 0.00 0.00 45.63 4.01
4154 5167 0.035739 GAGGAGGTTTACACCCGCAA 59.964 55.000 0.00 0.00 45.63 4.85
4155 5168 1.675219 GAGGAGGTTTACACCCGCA 59.325 57.895 0.00 0.00 45.63 5.69
4156 5169 1.078637 GGAGGAGGTTTACACCCGC 60.079 63.158 0.00 0.00 45.63 6.13
4157 5170 1.217244 CGGAGGAGGTTTACACCCG 59.783 63.158 0.00 0.00 45.63 5.28
4158 5171 0.248565 GTCGGAGGAGGTTTACACCC 59.751 60.000 0.00 0.00 45.63 4.61
4159 5172 0.108945 CGTCGGAGGAGGTTTACACC 60.109 60.000 0.00 0.00 44.67 4.16
4160 5173 0.735287 GCGTCGGAGGAGGTTTACAC 60.735 60.000 1.18 0.00 0.00 2.90
4161 5174 1.588082 GCGTCGGAGGAGGTTTACA 59.412 57.895 1.18 0.00 0.00 2.41
4162 5175 1.153686 GGCGTCGGAGGAGGTTTAC 60.154 63.158 1.18 0.00 0.00 2.01
4163 5176 2.353610 GGGCGTCGGAGGAGGTTTA 61.354 63.158 1.18 0.00 0.00 2.01
4164 5177 3.703127 GGGCGTCGGAGGAGGTTT 61.703 66.667 1.18 0.00 0.00 3.27
4182 5195 3.845259 TCCATAGGGACGCGTGGC 61.845 66.667 20.70 1.83 38.64 5.01
4190 5203 2.024655 ACGTTGAGTAGGTCCATAGGGA 60.025 50.000 0.00 0.00 42.29 4.20
4191 5204 2.385803 ACGTTGAGTAGGTCCATAGGG 58.614 52.381 0.00 0.00 0.00 3.53
4192 5205 4.467198 AAACGTTGAGTAGGTCCATAGG 57.533 45.455 0.00 0.00 0.00 2.57
4193 5206 6.183360 TGGATAAACGTTGAGTAGGTCCATAG 60.183 42.308 0.00 0.00 34.05 2.23
4194 5207 5.657745 TGGATAAACGTTGAGTAGGTCCATA 59.342 40.000 0.00 0.00 34.05 2.74
4195 5208 4.468510 TGGATAAACGTTGAGTAGGTCCAT 59.531 41.667 0.00 0.00 34.05 3.41
4196 5209 3.833650 TGGATAAACGTTGAGTAGGTCCA 59.166 43.478 0.00 0.54 35.52 4.02
4197 5210 4.460948 TGGATAAACGTTGAGTAGGTCC 57.539 45.455 0.00 0.00 0.00 4.46
4198 5211 5.749109 CAGATGGATAAACGTTGAGTAGGTC 59.251 44.000 0.00 0.00 0.00 3.85
4199 5212 5.661458 CAGATGGATAAACGTTGAGTAGGT 58.339 41.667 0.00 0.00 0.00 3.08
4200 5213 4.508124 GCAGATGGATAAACGTTGAGTAGG 59.492 45.833 0.00 0.00 0.00 3.18
4201 5214 4.508124 GGCAGATGGATAAACGTTGAGTAG 59.492 45.833 0.00 0.00 0.00 2.57
4202 5215 4.081365 TGGCAGATGGATAAACGTTGAGTA 60.081 41.667 0.00 0.00 0.00 2.59
4203 5216 3.270877 GGCAGATGGATAAACGTTGAGT 58.729 45.455 0.00 0.00 0.00 3.41
4204 5217 3.063997 GTGGCAGATGGATAAACGTTGAG 59.936 47.826 0.00 0.00 0.00 3.02
4205 5218 3.006940 GTGGCAGATGGATAAACGTTGA 58.993 45.455 0.00 0.00 0.00 3.18
4206 5219 2.097466 GGTGGCAGATGGATAAACGTTG 59.903 50.000 0.00 0.00 0.00 4.10
4207 5220 2.365582 GGTGGCAGATGGATAAACGTT 58.634 47.619 0.00 0.00 0.00 3.99
4208 5221 1.408266 GGGTGGCAGATGGATAAACGT 60.408 52.381 0.00 0.00 0.00 3.99
4209 5222 1.134098 AGGGTGGCAGATGGATAAACG 60.134 52.381 0.00 0.00 0.00 3.60
4210 5223 2.736670 AGGGTGGCAGATGGATAAAC 57.263 50.000 0.00 0.00 0.00 2.01
4211 5224 4.665009 AGATAAGGGTGGCAGATGGATAAA 59.335 41.667 0.00 0.00 0.00 1.40
4212 5225 4.242811 AGATAAGGGTGGCAGATGGATAA 58.757 43.478 0.00 0.00 0.00 1.75
4213 5226 3.840666 GAGATAAGGGTGGCAGATGGATA 59.159 47.826 0.00 0.00 0.00 2.59
4214 5227 2.641815 GAGATAAGGGTGGCAGATGGAT 59.358 50.000 0.00 0.00 0.00 3.41
4215 5228 2.050144 GAGATAAGGGTGGCAGATGGA 58.950 52.381 0.00 0.00 0.00 3.41
4216 5229 2.053244 AGAGATAAGGGTGGCAGATGG 58.947 52.381 0.00 0.00 0.00 3.51
4217 5230 3.390639 AGAAGAGATAAGGGTGGCAGATG 59.609 47.826 0.00 0.00 0.00 2.90
4218 5231 3.663198 AGAAGAGATAAGGGTGGCAGAT 58.337 45.455 0.00 0.00 0.00 2.90
4219 5232 3.121929 AGAAGAGATAAGGGTGGCAGA 57.878 47.619 0.00 0.00 0.00 4.26
4220 5233 3.454082 AGAAGAAGAGATAAGGGTGGCAG 59.546 47.826 0.00 0.00 0.00 4.85
4221 5234 3.454858 AGAAGAAGAGATAAGGGTGGCA 58.545 45.455 0.00 0.00 0.00 4.92
4222 5235 4.500035 CGTAGAAGAAGAGATAAGGGTGGC 60.500 50.000 0.00 0.00 0.00 5.01
4223 5236 4.500035 GCGTAGAAGAAGAGATAAGGGTGG 60.500 50.000 0.00 0.00 0.00 4.61
4224 5237 4.612943 GCGTAGAAGAAGAGATAAGGGTG 58.387 47.826 0.00 0.00 0.00 4.61
4225 5238 3.315749 CGCGTAGAAGAAGAGATAAGGGT 59.684 47.826 0.00 0.00 0.00 4.34
4226 5239 3.854045 GCGCGTAGAAGAAGAGATAAGGG 60.854 52.174 8.43 0.00 0.00 3.95
4227 5240 3.301706 GCGCGTAGAAGAAGAGATAAGG 58.698 50.000 8.43 0.00 0.00 2.69
4228 5241 3.301706 GGCGCGTAGAAGAAGAGATAAG 58.698 50.000 8.43 0.00 0.00 1.73
4229 5242 2.034305 GGGCGCGTAGAAGAAGAGATAA 59.966 50.000 8.43 0.00 0.00 1.75
4230 5243 1.607628 GGGCGCGTAGAAGAAGAGATA 59.392 52.381 8.43 0.00 0.00 1.98
4231 5244 0.386113 GGGCGCGTAGAAGAAGAGAT 59.614 55.000 8.43 0.00 0.00 2.75
4232 5245 1.807886 GGGCGCGTAGAAGAAGAGA 59.192 57.895 8.43 0.00 0.00 3.10
4233 5246 1.586564 CGGGCGCGTAGAAGAAGAG 60.587 63.158 15.94 0.00 0.00 2.85
4234 5247 1.588824 TTCGGGCGCGTAGAAGAAGA 61.589 55.000 23.19 0.00 0.00 2.87
4235 5248 1.153901 TTCGGGCGCGTAGAAGAAG 60.154 57.895 23.19 0.00 0.00 2.85
4236 5249 1.444895 GTTCGGGCGCGTAGAAGAA 60.445 57.895 23.19 5.83 0.00 2.52
4237 5250 2.180017 GTTCGGGCGCGTAGAAGA 59.820 61.111 23.19 0.00 0.00 2.87
4238 5251 2.884207 GGTTCGGGCGCGTAGAAG 60.884 66.667 23.19 0.00 0.00 2.85
4239 5252 3.682885 TGGTTCGGGCGCGTAGAA 61.683 61.111 23.19 7.39 0.00 2.10
4240 5253 4.424566 GTGGTTCGGGCGCGTAGA 62.425 66.667 23.19 7.75 0.00 2.59
4241 5254 4.430765 AGTGGTTCGGGCGCGTAG 62.431 66.667 23.19 0.00 0.00 3.51
4242 5255 4.424566 GAGTGGTTCGGGCGCGTA 62.425 66.667 23.19 11.15 0.00 4.42
4245 5258 1.792118 AAAAAGAGTGGTTCGGGCGC 61.792 55.000 0.00 0.00 0.00 6.53
4246 5259 2.327228 AAAAAGAGTGGTTCGGGCG 58.673 52.632 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.