Multiple sequence alignment - TraesCS1D01G001200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G001200 chr1D 100.000 3137 0 0 1 3137 323964 320828 0.000000e+00 5794
1 TraesCS1D01G001200 chr1D 89.830 1701 143 17 1282 2976 260409 258733 0.000000e+00 2156
2 TraesCS1D01G001200 chr1D 88.022 1102 102 10 410 1490 252036 250944 0.000000e+00 1277
3 TraesCS1D01G001200 chr1D 87.906 1108 80 15 424 1490 261223 260129 0.000000e+00 1254
4 TraesCS1D01G001200 chr1D 88.696 1035 98 15 1282 2311 251224 250204 0.000000e+00 1245
5 TraesCS1D01G001200 chr1D 87.343 798 88 8 2345 3137 236679 235890 0.000000e+00 902
6 TraesCS1D01G001200 chr1B 91.959 1679 82 17 404 2030 5098632 5100309 0.000000e+00 2303
7 TraesCS1D01G001200 chr1B 88.973 1587 122 20 1207 2764 5057146 5058708 0.000000e+00 1912
8 TraesCS1D01G001200 chr1B 87.839 1439 106 17 432 1830 5136405 5137814 0.000000e+00 1624
9 TraesCS1D01G001200 chr1B 92.489 1145 62 6 404 1531 5056252 5057389 0.000000e+00 1616
10 TraesCS1D01G001200 chr1B 88.608 1343 134 15 1801 3137 5137857 5139186 0.000000e+00 1615
11 TraesCS1D01G001200 chr1B 90.941 1137 92 7 2004 3137 5100315 5101443 0.000000e+00 1519
12 TraesCS1D01G001200 chr1B 84.642 1426 131 38 404 1821 4965026 4966371 0.000000e+00 1339
13 TraesCS1D01G001200 chr1B 86.600 1097 108 13 404 1472 5141365 5142450 0.000000e+00 1175
14 TraesCS1D01G001200 chr1B 86.602 1030 100 14 1282 2308 5142182 5143176 0.000000e+00 1103
15 TraesCS1D01G001200 chr1B 83.651 1156 113 31 404 1531 4993292 4992185 0.000000e+00 1018
16 TraesCS1D01G001200 chr1B 86.277 787 93 12 2356 3137 5143196 5143972 0.000000e+00 841
17 TraesCS1D01G001200 chr1B 85.299 619 62 19 1213 1821 4992548 4991949 2.070000e-171 612
18 TraesCS1D01G001200 chr1B 92.612 379 24 3 2762 3137 5079496 5079873 2.750000e-150 542
19 TraesCS1D01G001200 chr1A 84.615 1599 200 25 1389 2976 3846428 3844865 0.000000e+00 1548
20 TraesCS1D01G001200 chr1A 83.538 1707 195 32 1282 2976 4041459 4043091 0.000000e+00 1517
21 TraesCS1D01G001200 chr1A 83.421 1707 197 32 1282 2976 4033474 4035106 0.000000e+00 1506
22 TraesCS1D01G001200 chr1A 84.924 1121 100 15 404 1502 4040672 4041745 0.000000e+00 1070
23 TraesCS1D01G001200 chr1A 84.835 1121 101 15 404 1502 4032687 4033760 0.000000e+00 1064
24 TraesCS1D01G001200 chr1A 86.441 1003 86 17 421 1396 3847811 3846832 0.000000e+00 1053
25 TraesCS1D01G001200 chr1A 83.781 1079 131 22 404 1471 3909738 3910783 0.000000e+00 983
26 TraesCS1D01G001200 chr1A 86.782 174 18 3 2805 2976 3913741 3913911 4.130000e-44 189
27 TraesCS1D01G001200 chr6B 89.826 403 33 6 3 404 213488949 213489344 7.760000e-141 510
28 TraesCS1D01G001200 chr6A 89.630 405 35 5 1 404 162907581 162907979 2.790000e-140 508
29 TraesCS1D01G001200 chr7A 88.943 407 38 7 1 404 455613161 455612759 2.170000e-136 496
30 TraesCS1D01G001200 chr6D 87.283 346 33 8 1 345 121584938 121585273 4.910000e-103 385
31 TraesCS1D01G001200 chr3A 83.242 364 51 8 45 404 320610651 320610294 3.020000e-85 326
32 TraesCS1D01G001200 chr3A 81.720 372 57 9 38 405 320602660 320602296 1.830000e-77 300
33 TraesCS1D01G001200 chr3A 80.457 394 65 12 1 388 137513849 137514236 1.100000e-74 291
34 TraesCS1D01G001200 chr2B 81.649 376 54 14 38 405 335536532 335536900 6.580000e-77 298
35 TraesCS1D01G001200 chr2B 88.384 198 15 7 210 404 330242119 330241927 6.770000e-57 231
36 TraesCS1D01G001200 chr4A 79.075 411 69 16 1 402 435712817 435713219 1.850000e-67 267
37 TraesCS1D01G001200 chr2D 89.759 166 8 7 243 405 156731141 156731300 1.480000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G001200 chr1D 320828 323964 3136 True 5794.0 5794 100.0000 1 3137 1 chr1D.!!$R2 3136
1 TraesCS1D01G001200 chr1D 258733 261223 2490 True 1705.0 2156 88.8680 424 2976 2 chr1D.!!$R4 2552
2 TraesCS1D01G001200 chr1D 250204 252036 1832 True 1261.0 1277 88.3590 410 2311 2 chr1D.!!$R3 1901
3 TraesCS1D01G001200 chr1D 235890 236679 789 True 902.0 902 87.3430 2345 3137 1 chr1D.!!$R1 792
4 TraesCS1D01G001200 chr1B 5098632 5101443 2811 False 1911.0 2303 91.4500 404 3137 2 chr1B.!!$F4 2733
5 TraesCS1D01G001200 chr1B 5056252 5058708 2456 False 1764.0 1912 90.7310 404 2764 2 chr1B.!!$F3 2360
6 TraesCS1D01G001200 chr1B 4965026 4966371 1345 False 1339.0 1339 84.6420 404 1821 1 chr1B.!!$F1 1417
7 TraesCS1D01G001200 chr1B 5136405 5143972 7567 False 1271.6 1624 87.1852 404 3137 5 chr1B.!!$F5 2733
8 TraesCS1D01G001200 chr1B 4991949 4993292 1343 True 815.0 1018 84.4750 404 1821 2 chr1B.!!$R1 1417
9 TraesCS1D01G001200 chr1A 3844865 3847811 2946 True 1300.5 1548 85.5280 421 2976 2 chr1A.!!$R1 2555
10 TraesCS1D01G001200 chr1A 4040672 4043091 2419 False 1293.5 1517 84.2310 404 2976 2 chr1A.!!$F3 2572
11 TraesCS1D01G001200 chr1A 4032687 4035106 2419 False 1285.0 1506 84.1280 404 2976 2 chr1A.!!$F2 2572
12 TraesCS1D01G001200 chr1A 3909738 3913911 4173 False 586.0 983 85.2815 404 2976 2 chr1A.!!$F1 2572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.107410 GCATGACATCGGGGGTGTTA 60.107 55.0 0.0 0.0 0.0 2.41 F
1580 2200 0.316841 CATTCCCCCAACAACAACGG 59.683 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 2585 0.325671 CCCTGGCCTTGGACTAGAGA 60.326 60.000 15.51 0.0 0.0 3.10 R
2916 10193 4.033009 TCTCCTTGGAGTTCATATCAGCA 58.967 43.478 15.44 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.682943 TTTAGTTTATGCAGCAAACGACT 57.317 34.783 16.65 4.30 40.14 4.18
24 25 5.682943 TTAGTTTATGCAGCAAACGACTT 57.317 34.783 16.65 6.35 40.14 3.01
25 26 4.568152 AGTTTATGCAGCAAACGACTTT 57.432 36.364 16.65 1.92 40.14 2.66
26 27 4.932146 AGTTTATGCAGCAAACGACTTTT 58.068 34.783 16.65 1.37 40.14 2.27
27 28 4.739716 AGTTTATGCAGCAAACGACTTTTG 59.260 37.500 16.65 0.20 46.57 2.44
40 41 7.982198 CAAACGACTTTTGCTATAACTGAAAC 58.018 34.615 0.00 0.00 38.37 2.78
41 42 7.492352 AACGACTTTTGCTATAACTGAAACT 57.508 32.000 0.00 0.00 0.00 2.66
42 43 7.492352 ACGACTTTTGCTATAACTGAAACTT 57.508 32.000 0.00 0.00 0.00 2.66
43 44 7.352739 ACGACTTTTGCTATAACTGAAACTTG 58.647 34.615 0.00 0.00 0.00 3.16
44 45 6.797033 CGACTTTTGCTATAACTGAAACTTGG 59.203 38.462 0.00 0.00 0.00 3.61
45 46 6.447162 ACTTTTGCTATAACTGAAACTTGGC 58.553 36.000 0.00 0.00 0.00 4.52
46 47 6.040391 ACTTTTGCTATAACTGAAACTTGGCA 59.960 34.615 0.00 0.00 0.00 4.92
47 48 5.371115 TTGCTATAACTGAAACTTGGCAC 57.629 39.130 0.00 0.00 0.00 5.01
48 49 4.393834 TGCTATAACTGAAACTTGGCACA 58.606 39.130 0.00 0.00 0.00 4.57
49 50 5.009631 TGCTATAACTGAAACTTGGCACAT 58.990 37.500 0.00 0.00 39.30 3.21
50 51 6.176896 TGCTATAACTGAAACTTGGCACATA 58.823 36.000 0.00 0.00 39.30 2.29
51 52 6.657117 TGCTATAACTGAAACTTGGCACATAA 59.343 34.615 0.00 0.00 39.30 1.90
52 53 7.175816 TGCTATAACTGAAACTTGGCACATAAA 59.824 33.333 0.00 0.00 39.30 1.40
53 54 8.190784 GCTATAACTGAAACTTGGCACATAAAT 58.809 33.333 0.00 0.00 39.30 1.40
54 55 9.722056 CTATAACTGAAACTTGGCACATAAATC 57.278 33.333 0.00 0.00 39.30 2.17
55 56 6.403866 AACTGAAACTTGGCACATAAATCA 57.596 33.333 0.00 0.00 39.30 2.57
56 57 6.403866 ACTGAAACTTGGCACATAAATCAA 57.596 33.333 0.00 0.00 39.30 2.57
57 58 6.449698 ACTGAAACTTGGCACATAAATCAAG 58.550 36.000 0.00 0.00 39.30 3.02
58 59 5.229423 TGAAACTTGGCACATAAATCAAGC 58.771 37.500 0.00 0.00 39.92 4.01
59 60 4.870123 AACTTGGCACATAAATCAAGCA 57.130 36.364 0.00 0.00 39.92 3.91
60 61 4.178545 ACTTGGCACATAAATCAAGCAC 57.821 40.909 0.00 0.00 39.92 4.40
61 62 3.573538 ACTTGGCACATAAATCAAGCACA 59.426 39.130 0.00 0.00 39.92 4.57
62 63 3.574284 TGGCACATAAATCAAGCACAC 57.426 42.857 0.00 0.00 0.00 3.82
63 64 2.889678 TGGCACATAAATCAAGCACACA 59.110 40.909 0.00 0.00 0.00 3.72
64 65 3.320256 TGGCACATAAATCAAGCACACAA 59.680 39.130 0.00 0.00 0.00 3.33
65 66 4.021280 TGGCACATAAATCAAGCACACAAT 60.021 37.500 0.00 0.00 0.00 2.71
66 67 4.931002 GGCACATAAATCAAGCACACAATT 59.069 37.500 0.00 0.00 0.00 2.32
67 68 5.409214 GGCACATAAATCAAGCACACAATTT 59.591 36.000 0.00 0.00 0.00 1.82
68 69 6.073112 GGCACATAAATCAAGCACACAATTTT 60.073 34.615 0.00 0.00 0.00 1.82
69 70 6.793203 GCACATAAATCAAGCACACAATTTTG 59.207 34.615 0.00 0.00 0.00 2.44
70 71 7.292292 CACATAAATCAAGCACACAATTTTGG 58.708 34.615 0.00 0.00 0.00 3.28
71 72 6.427547 ACATAAATCAAGCACACAATTTTGGG 59.572 34.615 0.00 0.00 37.67 4.12
72 73 2.906691 TCAAGCACACAATTTTGGGG 57.093 45.000 0.00 0.00 35.39 4.96
73 74 2.114616 TCAAGCACACAATTTTGGGGT 58.885 42.857 0.00 0.00 35.39 4.95
74 75 2.158986 TCAAGCACACAATTTTGGGGTG 60.159 45.455 0.00 10.96 39.23 4.61
75 76 0.758123 AGCACACAATTTTGGGGTGG 59.242 50.000 0.00 0.22 37.76 4.61
76 77 0.884259 GCACACAATTTTGGGGTGGC 60.884 55.000 14.86 5.39 37.76 5.01
77 78 0.467384 CACACAATTTTGGGGTGGCA 59.533 50.000 0.00 0.00 35.39 4.92
78 79 0.467804 ACACAATTTTGGGGTGGCAC 59.532 50.000 9.70 9.70 35.39 5.01
79 80 0.467384 CACAATTTTGGGGTGGCACA 59.533 50.000 20.82 0.00 0.00 4.57
80 81 1.134280 CACAATTTTGGGGTGGCACAA 60.134 47.619 20.82 4.78 44.16 3.33
81 82 1.561542 ACAATTTTGGGGTGGCACAAA 59.438 42.857 20.82 11.46 44.16 2.83
82 83 2.025887 ACAATTTTGGGGTGGCACAAAA 60.026 40.909 20.82 17.05 46.66 2.44
83 84 3.019564 CAATTTTGGGGTGGCACAAAAA 58.980 40.909 20.82 20.42 46.01 1.94
84 85 2.409948 TTTTGGGGTGGCACAAAAAG 57.590 45.000 20.82 0.00 44.16 2.27
85 86 1.280457 TTTGGGGTGGCACAAAAAGT 58.720 45.000 20.82 0.00 44.16 2.66
86 87 1.280457 TTGGGGTGGCACAAAAAGTT 58.720 45.000 20.82 0.00 44.16 2.66
87 88 1.280457 TGGGGTGGCACAAAAAGTTT 58.720 45.000 20.82 0.00 44.16 2.66
88 89 1.065854 TGGGGTGGCACAAAAAGTTTG 60.066 47.619 20.82 0.00 44.16 2.93
89 90 1.662517 GGGTGGCACAAAAAGTTTGG 58.337 50.000 20.82 0.00 44.16 3.28
90 91 1.662517 GGTGGCACAAAAAGTTTGGG 58.337 50.000 20.82 2.31 44.16 4.12
91 92 1.662517 GTGGCACAAAAAGTTTGGGG 58.337 50.000 13.86 0.00 44.16 4.96
92 93 2.701587 GGCACAAAAAGTTTGGGGC 58.298 52.632 12.92 12.92 41.14 5.80
93 94 0.817634 GGCACAAAAAGTTTGGGGCC 60.818 55.000 16.34 15.66 41.87 5.80
94 95 0.107459 GCACAAAAAGTTTGGGGCCA 60.107 50.000 4.39 0.00 0.00 5.36
95 96 1.680249 GCACAAAAAGTTTGGGGCCAA 60.680 47.619 4.39 0.00 0.00 4.52
96 97 2.716217 CACAAAAAGTTTGGGGCCAAA 58.284 42.857 4.39 0.00 42.77 3.28
97 98 3.286353 CACAAAAAGTTTGGGGCCAAAT 58.714 40.909 4.39 0.00 45.90 2.32
98 99 3.698539 CACAAAAAGTTTGGGGCCAAATT 59.301 39.130 4.39 0.00 45.90 1.82
99 100 3.698539 ACAAAAAGTTTGGGGCCAAATTG 59.301 39.130 4.39 3.97 45.90 2.32
100 101 3.941704 AAAAGTTTGGGGCCAAATTGA 57.058 38.095 4.39 0.00 45.90 2.57
101 102 3.941704 AAAGTTTGGGGCCAAATTGAA 57.058 38.095 4.39 0.00 45.90 2.69
102 103 3.941704 AAGTTTGGGGCCAAATTGAAA 57.058 38.095 4.39 0.00 45.90 2.69
103 104 4.451891 AAGTTTGGGGCCAAATTGAAAT 57.548 36.364 4.39 0.00 45.90 2.17
104 105 4.019792 AGTTTGGGGCCAAATTGAAATC 57.980 40.909 4.39 0.00 45.90 2.17
105 106 3.393941 AGTTTGGGGCCAAATTGAAATCA 59.606 39.130 4.39 0.00 45.90 2.57
106 107 3.415457 TTGGGGCCAAATTGAAATCAC 57.585 42.857 4.39 0.00 32.44 3.06
107 108 2.618794 TGGGGCCAAATTGAAATCACT 58.381 42.857 4.39 0.00 0.00 3.41
108 109 2.978278 TGGGGCCAAATTGAAATCACTT 59.022 40.909 4.39 0.00 0.00 3.16
109 110 4.163427 TGGGGCCAAATTGAAATCACTTA 58.837 39.130 4.39 0.00 0.00 2.24
110 111 4.594920 TGGGGCCAAATTGAAATCACTTAA 59.405 37.500 4.39 0.00 0.00 1.85
111 112 5.072329 TGGGGCCAAATTGAAATCACTTAAA 59.928 36.000 4.39 0.00 0.00 1.52
112 113 6.179756 GGGGCCAAATTGAAATCACTTAAAT 58.820 36.000 4.39 0.00 0.00 1.40
113 114 6.658816 GGGGCCAAATTGAAATCACTTAAATT 59.341 34.615 4.39 0.00 0.00 1.82
114 115 7.826744 GGGGCCAAATTGAAATCACTTAAATTA 59.173 33.333 4.39 0.00 0.00 1.40
115 116 9.394767 GGGCCAAATTGAAATCACTTAAATTAT 57.605 29.630 4.39 0.00 0.00 1.28
141 142 8.552083 AATTGCATTTAAAAGAGCTAAAAGGG 57.448 30.769 10.63 0.00 0.00 3.95
142 143 6.664428 TGCATTTAAAAGAGCTAAAAGGGT 57.336 33.333 10.63 0.00 0.00 4.34
143 144 6.454795 TGCATTTAAAAGAGCTAAAAGGGTG 58.545 36.000 10.63 0.00 0.00 4.61
144 145 6.041523 TGCATTTAAAAGAGCTAAAAGGGTGT 59.958 34.615 10.63 0.00 0.00 4.16
145 146 6.586463 GCATTTAAAAGAGCTAAAAGGGTGTC 59.414 38.462 0.00 0.00 0.00 3.67
146 147 5.934935 TTAAAAGAGCTAAAAGGGTGTCG 57.065 39.130 0.00 0.00 0.00 4.35
147 148 3.487120 AAAGAGCTAAAAGGGTGTCGT 57.513 42.857 0.00 0.00 0.00 4.34
148 149 3.487120 AAGAGCTAAAAGGGTGTCGTT 57.513 42.857 0.00 0.00 0.00 3.85
149 150 2.767505 AGAGCTAAAAGGGTGTCGTTG 58.232 47.619 0.00 0.00 0.00 4.10
150 151 1.804748 GAGCTAAAAGGGTGTCGTTGG 59.195 52.381 0.00 0.00 0.00 3.77
151 152 1.142262 AGCTAAAAGGGTGTCGTTGGT 59.858 47.619 0.00 0.00 0.00 3.67
152 153 1.534163 GCTAAAAGGGTGTCGTTGGTC 59.466 52.381 0.00 0.00 0.00 4.02
153 154 2.148768 CTAAAAGGGTGTCGTTGGTCC 58.851 52.381 0.00 0.00 0.00 4.46
154 155 0.256464 AAAAGGGTGTCGTTGGTCCA 59.744 50.000 0.00 0.00 0.00 4.02
155 156 0.464916 AAAGGGTGTCGTTGGTCCAC 60.465 55.000 0.00 0.00 0.00 4.02
156 157 1.628238 AAGGGTGTCGTTGGTCCACA 61.628 55.000 0.00 0.00 0.00 4.17
157 158 1.597027 GGGTGTCGTTGGTCCACAG 60.597 63.158 0.00 0.00 0.00 3.66
158 159 1.145377 GGTGTCGTTGGTCCACAGT 59.855 57.895 0.00 0.00 0.00 3.55
159 160 0.463116 GGTGTCGTTGGTCCACAGTT 60.463 55.000 0.00 0.00 0.00 3.16
160 161 1.375551 GTGTCGTTGGTCCACAGTTT 58.624 50.000 0.00 0.00 0.00 2.66
161 162 2.553086 GTGTCGTTGGTCCACAGTTTA 58.447 47.619 0.00 0.00 0.00 2.01
162 163 2.937799 GTGTCGTTGGTCCACAGTTTAA 59.062 45.455 0.00 0.00 0.00 1.52
163 164 3.562557 GTGTCGTTGGTCCACAGTTTAAT 59.437 43.478 0.00 0.00 0.00 1.40
164 165 4.751098 GTGTCGTTGGTCCACAGTTTAATA 59.249 41.667 0.00 0.00 0.00 0.98
165 166 5.410439 GTGTCGTTGGTCCACAGTTTAATAT 59.590 40.000 0.00 0.00 0.00 1.28
166 167 5.998981 TGTCGTTGGTCCACAGTTTAATATT 59.001 36.000 0.00 0.00 0.00 1.28
167 168 6.148150 TGTCGTTGGTCCACAGTTTAATATTC 59.852 38.462 0.00 0.00 0.00 1.75
168 169 6.148150 GTCGTTGGTCCACAGTTTAATATTCA 59.852 38.462 0.00 0.00 0.00 2.57
169 170 6.882140 TCGTTGGTCCACAGTTTAATATTCAT 59.118 34.615 0.00 0.00 0.00 2.57
170 171 8.041919 TCGTTGGTCCACAGTTTAATATTCATA 58.958 33.333 0.00 0.00 0.00 2.15
171 172 8.335356 CGTTGGTCCACAGTTTAATATTCATAG 58.665 37.037 0.00 0.00 0.00 2.23
172 173 8.621286 GTTGGTCCACAGTTTAATATTCATAGG 58.379 37.037 0.00 0.00 0.00 2.57
173 174 6.770785 TGGTCCACAGTTTAATATTCATAGGC 59.229 38.462 0.00 0.00 0.00 3.93
174 175 6.770785 GGTCCACAGTTTAATATTCATAGGCA 59.229 38.462 0.00 0.00 0.00 4.75
175 176 7.448469 GGTCCACAGTTTAATATTCATAGGCAT 59.552 37.037 0.00 0.00 0.00 4.40
176 177 8.850156 GTCCACAGTTTAATATTCATAGGCATT 58.150 33.333 0.00 0.00 0.00 3.56
177 178 9.420118 TCCACAGTTTAATATTCATAGGCATTT 57.580 29.630 0.00 0.00 0.00 2.32
190 191 9.657419 ATTCATAGGCATTTTAAAAGTTTCCAG 57.343 29.630 6.79 0.00 0.00 3.86
191 192 8.415950 TCATAGGCATTTTAAAAGTTTCCAGA 57.584 30.769 6.79 0.00 0.00 3.86
192 193 8.865090 TCATAGGCATTTTAAAAGTTTCCAGAA 58.135 29.630 6.79 0.00 0.00 3.02
193 194 9.487790 CATAGGCATTTTAAAAGTTTCCAGAAA 57.512 29.630 6.79 0.00 0.00 2.52
195 196 8.800370 AGGCATTTTAAAAGTTTCCAGAAAAA 57.200 26.923 6.79 0.00 31.33 1.94
221 222 8.792830 ACTTTGCTAATGTATGACAGTTATGT 57.207 30.769 0.00 0.00 44.31 2.29
222 223 9.884636 ACTTTGCTAATGTATGACAGTTATGTA 57.115 29.630 0.00 0.00 40.68 2.29
224 225 9.884636 TTTGCTAATGTATGACAGTTATGTAGT 57.115 29.630 0.00 0.00 40.68 2.73
225 226 8.871686 TGCTAATGTATGACAGTTATGTAGTG 57.128 34.615 0.00 0.00 40.68 2.74
226 227 8.691797 TGCTAATGTATGACAGTTATGTAGTGA 58.308 33.333 0.00 0.00 40.68 3.41
227 228 9.529325 GCTAATGTATGACAGTTATGTAGTGAA 57.471 33.333 0.00 0.00 40.68 3.18
247 248 8.934023 AGTGAATATTTTCAACCTAAGGAACA 57.066 30.769 0.00 0.00 43.29 3.18
248 249 9.533831 AGTGAATATTTTCAACCTAAGGAACAT 57.466 29.630 0.00 0.00 43.29 2.71
292 293 8.560576 AAAATTATAATTCGACTTGGCATTCG 57.439 30.769 11.08 11.65 36.55 3.34
293 294 7.490962 AATTATAATTCGACTTGGCATTCGA 57.509 32.000 15.44 15.44 42.35 3.71
298 299 3.469899 TCGACTTGGCATTCGAATTTG 57.530 42.857 16.67 0.48 41.16 2.32
299 300 2.161410 TCGACTTGGCATTCGAATTTGG 59.839 45.455 16.67 0.00 41.16 3.28
300 301 2.161410 CGACTTGGCATTCGAATTTGGA 59.839 45.455 8.21 0.00 37.43 3.53
301 302 3.181497 CGACTTGGCATTCGAATTTGGAT 60.181 43.478 8.21 0.00 37.43 3.41
302 303 4.675146 CGACTTGGCATTCGAATTTGGATT 60.675 41.667 8.21 0.00 37.43 3.01
303 304 5.151297 ACTTGGCATTCGAATTTGGATTT 57.849 34.783 8.21 0.00 0.00 2.17
304 305 4.931002 ACTTGGCATTCGAATTTGGATTTG 59.069 37.500 8.21 0.00 0.00 2.32
305 306 4.797800 TGGCATTCGAATTTGGATTTGA 57.202 36.364 8.21 0.00 34.54 2.69
306 307 4.746729 TGGCATTCGAATTTGGATTTGAG 58.253 39.130 8.21 0.00 37.07 3.02
307 308 4.220382 TGGCATTCGAATTTGGATTTGAGT 59.780 37.500 8.21 0.00 37.07 3.41
308 309 5.170748 GGCATTCGAATTTGGATTTGAGTT 58.829 37.500 8.21 0.00 37.07 3.01
309 310 5.639082 GGCATTCGAATTTGGATTTGAGTTT 59.361 36.000 8.21 0.00 37.07 2.66
310 311 6.147656 GGCATTCGAATTTGGATTTGAGTTTT 59.852 34.615 8.21 0.00 37.07 2.43
311 312 7.011189 GCATTCGAATTTGGATTTGAGTTTTG 58.989 34.615 8.21 0.00 37.07 2.44
312 313 7.512297 CATTCGAATTTGGATTTGAGTTTTGG 58.488 34.615 8.21 0.00 37.07 3.28
313 314 6.155475 TCGAATTTGGATTTGAGTTTTGGT 57.845 33.333 0.00 0.00 31.99 3.67
314 315 6.578023 TCGAATTTGGATTTGAGTTTTGGTT 58.422 32.000 0.00 0.00 31.99 3.67
315 316 7.044798 TCGAATTTGGATTTGAGTTTTGGTTT 58.955 30.769 0.00 0.00 31.99 3.27
316 317 7.010923 TCGAATTTGGATTTGAGTTTTGGTTTG 59.989 33.333 0.00 0.00 31.99 2.93
317 318 7.010923 CGAATTTGGATTTGAGTTTTGGTTTGA 59.989 33.333 0.00 0.00 0.00 2.69
318 319 8.572855 AATTTGGATTTGAGTTTTGGTTTGAA 57.427 26.923 0.00 0.00 0.00 2.69
319 320 7.986085 TTTGGATTTGAGTTTTGGTTTGAAA 57.014 28.000 0.00 0.00 0.00 2.69
320 321 6.976636 TGGATTTGAGTTTTGGTTTGAAAC 57.023 33.333 0.00 0.00 37.28 2.78
321 322 5.578727 TGGATTTGAGTTTTGGTTTGAAACG 59.421 36.000 1.53 0.00 40.87 3.60
322 323 5.006261 GGATTTGAGTTTTGGTTTGAAACGG 59.994 40.000 1.53 0.00 40.87 4.44
323 324 4.785511 TTGAGTTTTGGTTTGAAACGGA 57.214 36.364 1.53 0.00 40.87 4.69
324 325 4.785511 TGAGTTTTGGTTTGAAACGGAA 57.214 36.364 1.53 0.00 40.87 4.30
325 326 5.135508 TGAGTTTTGGTTTGAAACGGAAA 57.864 34.783 1.53 3.10 40.87 3.13
326 327 5.164954 TGAGTTTTGGTTTGAAACGGAAAG 58.835 37.500 1.53 0.00 40.87 2.62
327 328 5.047943 TGAGTTTTGGTTTGAAACGGAAAGA 60.048 36.000 1.53 0.00 40.87 2.52
328 329 5.407502 AGTTTTGGTTTGAAACGGAAAGAG 58.592 37.500 1.53 0.00 40.87 2.85
329 330 4.379339 TTTGGTTTGAAACGGAAAGAGG 57.621 40.909 1.53 0.00 0.00 3.69
330 331 3.284793 TGGTTTGAAACGGAAAGAGGA 57.715 42.857 1.53 0.00 0.00 3.71
331 332 3.827722 TGGTTTGAAACGGAAAGAGGAT 58.172 40.909 1.53 0.00 0.00 3.24
332 333 4.211920 TGGTTTGAAACGGAAAGAGGATT 58.788 39.130 1.53 0.00 0.00 3.01
333 334 5.378332 TGGTTTGAAACGGAAAGAGGATTA 58.622 37.500 1.53 0.00 0.00 1.75
334 335 5.472137 TGGTTTGAAACGGAAAGAGGATTAG 59.528 40.000 1.53 0.00 0.00 1.73
335 336 5.472478 GGTTTGAAACGGAAAGAGGATTAGT 59.528 40.000 1.53 0.00 0.00 2.24
336 337 6.652062 GGTTTGAAACGGAAAGAGGATTAGTA 59.348 38.462 1.53 0.00 0.00 1.82
337 338 7.173735 GGTTTGAAACGGAAAGAGGATTAGTAA 59.826 37.037 1.53 0.00 0.00 2.24
338 339 8.562052 GTTTGAAACGGAAAGAGGATTAGTAAA 58.438 33.333 0.00 0.00 0.00 2.01
339 340 8.680039 TTGAAACGGAAAGAGGATTAGTAAAA 57.320 30.769 0.00 0.00 0.00 1.52
340 341 8.857694 TGAAACGGAAAGAGGATTAGTAAAAT 57.142 30.769 0.00 0.00 0.00 1.82
341 342 8.726988 TGAAACGGAAAGAGGATTAGTAAAATG 58.273 33.333 0.00 0.00 0.00 2.32
342 343 8.857694 AAACGGAAAGAGGATTAGTAAAATGA 57.142 30.769 0.00 0.00 0.00 2.57
343 344 9.462606 AAACGGAAAGAGGATTAGTAAAATGAT 57.537 29.630 0.00 0.00 0.00 2.45
344 345 9.462606 AACGGAAAGAGGATTAGTAAAATGATT 57.537 29.630 0.00 0.00 0.00 2.57
370 371 6.120378 GATGACATAGCATCATTAGGCATG 57.880 41.667 0.00 0.00 43.21 4.06
371 372 5.231702 TGACATAGCATCATTAGGCATGA 57.768 39.130 0.00 0.00 46.41 3.07
372 373 5.243207 TGACATAGCATCATTAGGCATGAG 58.757 41.667 0.00 0.00 45.52 2.90
373 374 5.012354 TGACATAGCATCATTAGGCATGAGA 59.988 40.000 0.00 0.00 45.52 3.27
374 375 6.063496 ACATAGCATCATTAGGCATGAGAT 57.937 37.500 0.00 0.00 45.52 2.75
375 376 6.482524 ACATAGCATCATTAGGCATGAGATT 58.517 36.000 0.00 0.00 45.52 2.40
376 377 7.627311 ACATAGCATCATTAGGCATGAGATTA 58.373 34.615 0.00 0.00 45.52 1.75
377 378 7.551974 ACATAGCATCATTAGGCATGAGATTAC 59.448 37.037 0.00 0.00 45.52 1.89
378 379 6.124316 AGCATCATTAGGCATGAGATTACT 57.876 37.500 0.00 0.00 45.52 2.24
379 380 5.938710 AGCATCATTAGGCATGAGATTACTG 59.061 40.000 0.00 0.00 45.52 2.74
380 381 5.704515 GCATCATTAGGCATGAGATTACTGT 59.295 40.000 0.00 0.00 45.52 3.55
381 382 6.875726 GCATCATTAGGCATGAGATTACTGTA 59.124 38.462 0.00 0.00 45.52 2.74
382 383 7.064371 GCATCATTAGGCATGAGATTACTGTAG 59.936 40.741 0.00 0.00 45.52 2.74
383 384 6.459066 TCATTAGGCATGAGATTACTGTAGC 58.541 40.000 0.00 0.00 36.94 3.58
384 385 5.869649 TTAGGCATGAGATTACTGTAGCA 57.130 39.130 0.00 0.00 0.00 3.49
385 386 4.970860 AGGCATGAGATTACTGTAGCAT 57.029 40.909 0.00 0.00 0.00 3.79
386 387 4.639334 AGGCATGAGATTACTGTAGCATG 58.361 43.478 0.00 13.14 36.95 4.06
387 388 4.346127 AGGCATGAGATTACTGTAGCATGA 59.654 41.667 17.96 0.00 36.20 3.07
388 389 4.450419 GGCATGAGATTACTGTAGCATGAC 59.550 45.833 17.96 14.24 36.20 3.06
389 390 5.052481 GCATGAGATTACTGTAGCATGACA 58.948 41.667 17.96 0.00 36.20 3.58
390 391 5.699915 GCATGAGATTACTGTAGCATGACAT 59.300 40.000 17.96 7.08 36.20 3.06
391 392 6.128607 GCATGAGATTACTGTAGCATGACATC 60.129 42.308 17.96 6.02 36.20 3.06
392 393 5.523369 TGAGATTACTGTAGCATGACATCG 58.477 41.667 0.00 0.00 0.00 3.84
393 394 4.876125 AGATTACTGTAGCATGACATCGG 58.124 43.478 0.00 0.00 0.00 4.18
394 395 3.452755 TTACTGTAGCATGACATCGGG 57.547 47.619 0.00 0.00 0.00 5.14
395 396 0.465705 ACTGTAGCATGACATCGGGG 59.534 55.000 0.00 0.00 0.00 5.73
396 397 0.250038 CTGTAGCATGACATCGGGGG 60.250 60.000 0.00 0.00 0.00 5.40
397 398 0.980754 TGTAGCATGACATCGGGGGT 60.981 55.000 0.00 0.00 0.00 4.95
398 399 0.532862 GTAGCATGACATCGGGGGTG 60.533 60.000 0.00 0.00 0.00 4.61
399 400 0.980754 TAGCATGACATCGGGGGTGT 60.981 55.000 0.00 0.00 0.00 4.16
400 401 1.378514 GCATGACATCGGGGGTGTT 60.379 57.895 0.00 0.00 0.00 3.32
401 402 0.107410 GCATGACATCGGGGGTGTTA 60.107 55.000 0.00 0.00 0.00 2.41
402 403 1.663695 CATGACATCGGGGGTGTTAC 58.336 55.000 0.00 0.00 0.00 2.50
408 409 1.061546 ATCGGGGGTGTTACACTTGT 58.938 50.000 15.44 0.00 34.40 3.16
413 414 3.758425 GGGGGTGTTACACTTGTACAAT 58.242 45.455 15.44 0.00 34.40 2.71
467 468 9.810545 TTTGATGAGTCATGTATTGATAACGTA 57.189 29.630 11.20 0.00 36.54 3.57
515 542 5.831702 AAGGAGAATTTGATGAGTCATGC 57.168 39.130 11.20 3.11 33.56 4.06
516 543 4.851843 AGGAGAATTTGATGAGTCATGCA 58.148 39.130 11.20 5.80 33.56 3.96
525 552 7.393841 TTTGATGAGTCATGCATTGATAACA 57.606 32.000 11.20 0.00 36.54 2.41
533 560 7.700505 AGTCATGCATTGATAACATGTACAAG 58.299 34.615 0.00 0.00 41.51 3.16
609 638 7.555306 AGTTTTAGAAAGAACAAGAGTCCAC 57.445 36.000 0.00 0.00 0.00 4.02
616 645 6.378280 AGAAAGAACAAGAGTCCACAACAAAT 59.622 34.615 0.00 0.00 0.00 2.32
794 887 7.994911 AGATGAGTCAATGCCAATTATCAAGTA 59.005 33.333 0.00 0.00 0.00 2.24
1010 1109 3.513119 AGACTCCATACCATCATCCATCG 59.487 47.826 0.00 0.00 0.00 3.84
1035 1135 2.103094 ACACAACTAGAGCACAAGCAGA 59.897 45.455 0.00 0.00 45.49 4.26
1041 1141 4.645535 ACTAGAGCACAAGCAGAAAATCA 58.354 39.130 0.00 0.00 45.49 2.57
1189 1292 0.693049 CAACAACTAGTCCCCCAGCT 59.307 55.000 0.00 0.00 0.00 4.24
1235 1386 3.111484 ACAACAAACATTTCCCCAACCT 58.889 40.909 0.00 0.00 0.00 3.50
1491 2089 0.321346 CCAACAACCATTTCCCCAGC 59.679 55.000 0.00 0.00 0.00 4.85
1535 2134 1.638529 CCCAGCCCCAACAACAATTA 58.361 50.000 0.00 0.00 0.00 1.40
1580 2200 0.316841 CATTCCCCCAACAACAACGG 59.683 55.000 0.00 0.00 0.00 4.44
1881 2585 0.755327 GCAACAGGTGGGTCAAGGTT 60.755 55.000 0.00 0.00 0.00 3.50
1886 2590 2.257207 CAGGTGGGTCAAGGTTCTCTA 58.743 52.381 0.00 0.00 0.00 2.43
1913 2617 1.307309 CCAGGGCATCATCCAACCA 59.693 57.895 0.00 0.00 0.00 3.67
1943 2647 1.473965 GCTCAATTGGAGGCGATCAGA 60.474 52.381 5.42 0.00 44.22 3.27
1968 2672 5.716228 TCATTGGTATTGCAAACTCTTCCAT 59.284 36.000 1.71 0.00 0.00 3.41
1994 2698 0.604243 GCAACGTGTATGTCCCACCA 60.604 55.000 0.00 0.00 0.00 4.17
2009 2713 1.664873 CACCAGAGTGCTCCATCATG 58.335 55.000 0.00 0.00 37.14 3.07
2141 2891 7.201487 CGATGTAACGATGACAAATAAAGTGGA 60.201 37.037 0.00 0.00 35.09 4.02
2161 2911 1.202794 AGTGCACCATCATGTGTGACA 60.203 47.619 14.63 9.73 37.14 3.58
2165 2915 0.321564 ACCATCATGTGTGACACCGG 60.322 55.000 13.85 0.00 37.14 5.28
2224 2975 4.935352 AAGTTCTTGTTTGCCAGCATTA 57.065 36.364 0.00 0.00 0.00 1.90
2289 3044 7.567622 TCCCTAACTACAATTCTAGGCTTACAT 59.432 37.037 0.00 0.00 31.25 2.29
2354 3109 4.516365 ACCGATTAATGGTCGACCTATC 57.484 45.455 33.39 25.38 41.40 2.08
2364 3119 4.755411 TGGTCGACCTATCAATCTTGTTC 58.245 43.478 33.39 3.32 36.82 3.18
2389 3144 8.539544 TCATAGGCCGATTGATCTATTAATTGA 58.460 33.333 0.00 2.03 0.00 2.57
2447 3202 3.435105 TTCCTGAACATTGCACACAAC 57.565 42.857 0.00 0.00 38.99 3.32
2509 3264 0.108424 TTTGGCAGCAAAACAAGCGT 60.108 45.000 0.00 0.00 37.01 5.07
2614 8155 7.054491 AGCCTTCTTCAAAGCAATTCTTTAA 57.946 32.000 0.00 0.00 42.82 1.52
2617 8158 7.436933 CCTTCTTCAAAGCAATTCTTTAAGGT 58.563 34.615 14.15 0.00 42.82 3.50
2751 8292 3.684788 ACTCTTCATATGGTTTCGTGCAC 59.315 43.478 6.82 6.82 0.00 4.57
2761 8302 1.773856 TTTCGTGCACAGATGGGGGA 61.774 55.000 18.64 0.00 0.00 4.81
2803 10078 7.117379 ACAAAACTTAAGTAGCATCGGTTCTAC 59.883 37.037 8.92 0.00 36.35 2.59
2812 10087 3.935203 AGCATCGGTTCTACTTGATTGTG 59.065 43.478 0.00 0.00 0.00 3.33
3012 10292 8.799367 ACCCAAACAAATTTACTATTGTACTCC 58.201 33.333 0.00 0.00 38.75 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.682943 AGTCGTTTGCTGCATAAACTAAA 57.317 34.783 18.68 0.00 36.22 1.85
2 3 5.682943 AAGTCGTTTGCTGCATAAACTAA 57.317 34.783 18.68 8.75 36.22 2.24
3 4 5.682943 AAAGTCGTTTGCTGCATAAACTA 57.317 34.783 18.68 9.70 36.22 2.24
4 5 4.568152 AAAGTCGTTTGCTGCATAAACT 57.432 36.364 18.68 3.48 36.22 2.66
5 6 4.993550 CAAAAGTCGTTTGCTGCATAAAC 58.006 39.130 1.84 13.73 40.25 2.01
16 17 7.927048 AGTTTCAGTTATAGCAAAAGTCGTTT 58.073 30.769 0.00 0.00 0.00 3.60
17 18 7.492352 AGTTTCAGTTATAGCAAAAGTCGTT 57.508 32.000 0.00 0.00 0.00 3.85
18 19 7.352739 CAAGTTTCAGTTATAGCAAAAGTCGT 58.647 34.615 0.00 0.00 0.00 4.34
19 20 6.797033 CCAAGTTTCAGTTATAGCAAAAGTCG 59.203 38.462 0.00 0.00 0.00 4.18
20 21 6.582672 GCCAAGTTTCAGTTATAGCAAAAGTC 59.417 38.462 0.00 0.00 0.00 3.01
21 22 6.040391 TGCCAAGTTTCAGTTATAGCAAAAGT 59.960 34.615 0.00 0.00 0.00 2.66
22 23 6.363357 GTGCCAAGTTTCAGTTATAGCAAAAG 59.637 38.462 0.00 0.00 0.00 2.27
23 24 6.183360 TGTGCCAAGTTTCAGTTATAGCAAAA 60.183 34.615 0.00 0.00 0.00 2.44
24 25 5.300539 TGTGCCAAGTTTCAGTTATAGCAAA 59.699 36.000 0.00 0.00 0.00 3.68
25 26 4.824537 TGTGCCAAGTTTCAGTTATAGCAA 59.175 37.500 0.00 0.00 0.00 3.91
26 27 4.393834 TGTGCCAAGTTTCAGTTATAGCA 58.606 39.130 0.00 0.00 0.00 3.49
27 28 5.567138 ATGTGCCAAGTTTCAGTTATAGC 57.433 39.130 0.00 0.00 0.00 2.97
28 29 9.722056 GATTTATGTGCCAAGTTTCAGTTATAG 57.278 33.333 0.00 0.00 0.00 1.31
29 30 9.237187 TGATTTATGTGCCAAGTTTCAGTTATA 57.763 29.630 0.00 0.00 0.00 0.98
30 31 8.121305 TGATTTATGTGCCAAGTTTCAGTTAT 57.879 30.769 0.00 0.00 0.00 1.89
31 32 7.517614 TGATTTATGTGCCAAGTTTCAGTTA 57.482 32.000 0.00 0.00 0.00 2.24
32 33 6.403866 TGATTTATGTGCCAAGTTTCAGTT 57.596 33.333 0.00 0.00 0.00 3.16
33 34 6.403866 TTGATTTATGTGCCAAGTTTCAGT 57.596 33.333 0.00 0.00 0.00 3.41
34 35 5.346822 GCTTGATTTATGTGCCAAGTTTCAG 59.653 40.000 0.00 0.00 38.50 3.02
35 36 5.221402 TGCTTGATTTATGTGCCAAGTTTCA 60.221 36.000 0.00 0.00 38.50 2.69
36 37 5.119125 GTGCTTGATTTATGTGCCAAGTTTC 59.881 40.000 0.00 0.00 38.50 2.78
37 38 4.990426 GTGCTTGATTTATGTGCCAAGTTT 59.010 37.500 0.00 0.00 38.50 2.66
38 39 4.039004 TGTGCTTGATTTATGTGCCAAGTT 59.961 37.500 0.00 0.00 38.50 2.66
39 40 3.573538 TGTGCTTGATTTATGTGCCAAGT 59.426 39.130 0.00 0.00 38.50 3.16
40 41 3.922240 GTGTGCTTGATTTATGTGCCAAG 59.078 43.478 0.00 0.00 39.06 3.61
41 42 3.320256 TGTGTGCTTGATTTATGTGCCAA 59.680 39.130 0.00 0.00 0.00 4.52
42 43 2.889678 TGTGTGCTTGATTTATGTGCCA 59.110 40.909 0.00 0.00 0.00 4.92
43 44 3.574284 TGTGTGCTTGATTTATGTGCC 57.426 42.857 0.00 0.00 0.00 5.01
44 45 6.470557 AAATTGTGTGCTTGATTTATGTGC 57.529 33.333 0.00 0.00 0.00 4.57
45 46 7.292292 CCAAAATTGTGTGCTTGATTTATGTG 58.708 34.615 0.00 0.00 0.00 3.21
46 47 6.427547 CCCAAAATTGTGTGCTTGATTTATGT 59.572 34.615 0.00 0.00 0.00 2.29
47 48 6.128227 CCCCAAAATTGTGTGCTTGATTTATG 60.128 38.462 0.00 0.00 0.00 1.90
48 49 5.939296 CCCCAAAATTGTGTGCTTGATTTAT 59.061 36.000 0.00 0.00 0.00 1.40
49 50 5.163258 ACCCCAAAATTGTGTGCTTGATTTA 60.163 36.000 0.00 0.00 0.00 1.40
50 51 4.136051 CCCCAAAATTGTGTGCTTGATTT 58.864 39.130 0.00 0.00 0.00 2.17
51 52 3.136260 ACCCCAAAATTGTGTGCTTGATT 59.864 39.130 0.00 0.00 0.00 2.57
52 53 2.705127 ACCCCAAAATTGTGTGCTTGAT 59.295 40.909 0.00 0.00 0.00 2.57
53 54 2.114616 ACCCCAAAATTGTGTGCTTGA 58.885 42.857 0.00 0.00 0.00 3.02
54 55 2.211806 CACCCCAAAATTGTGTGCTTG 58.788 47.619 0.00 0.00 0.00 4.01
55 56 1.140652 CCACCCCAAAATTGTGTGCTT 59.859 47.619 0.00 0.00 31.54 3.91
56 57 0.758123 CCACCCCAAAATTGTGTGCT 59.242 50.000 0.00 0.00 31.54 4.40
57 58 0.884259 GCCACCCCAAAATTGTGTGC 60.884 55.000 0.00 0.00 31.54 4.57
58 59 0.467384 TGCCACCCCAAAATTGTGTG 59.533 50.000 0.00 6.23 0.00 3.82
59 60 0.467804 GTGCCACCCCAAAATTGTGT 59.532 50.000 0.00 0.00 0.00 3.72
60 61 0.467384 TGTGCCACCCCAAAATTGTG 59.533 50.000 0.00 0.00 0.00 3.33
61 62 1.207791 TTGTGCCACCCCAAAATTGT 58.792 45.000 0.00 0.00 0.00 2.71
62 63 2.338577 TTTGTGCCACCCCAAAATTG 57.661 45.000 0.00 0.00 0.00 2.32
63 64 3.286353 CTTTTTGTGCCACCCCAAAATT 58.714 40.909 0.00 0.00 39.51 1.82
64 65 2.240921 ACTTTTTGTGCCACCCCAAAAT 59.759 40.909 0.00 0.00 39.51 1.82
65 66 1.630878 ACTTTTTGTGCCACCCCAAAA 59.369 42.857 0.00 0.00 38.42 2.44
66 67 1.280457 ACTTTTTGTGCCACCCCAAA 58.720 45.000 0.00 0.00 0.00 3.28
67 68 1.280457 AACTTTTTGTGCCACCCCAA 58.720 45.000 0.00 0.00 0.00 4.12
68 69 1.065854 CAAACTTTTTGTGCCACCCCA 60.066 47.619 0.00 0.00 0.00 4.96
69 70 1.662517 CAAACTTTTTGTGCCACCCC 58.337 50.000 0.00 0.00 0.00 4.95
70 71 1.662517 CCAAACTTTTTGTGCCACCC 58.337 50.000 0.00 0.00 0.00 4.61
71 72 1.662517 CCCAAACTTTTTGTGCCACC 58.337 50.000 0.00 0.00 0.00 4.61
72 73 1.662517 CCCCAAACTTTTTGTGCCAC 58.337 50.000 0.00 0.00 0.00 5.01
73 74 0.107459 GCCCCAAACTTTTTGTGCCA 60.107 50.000 0.00 0.00 0.00 4.92
74 75 0.817634 GGCCCCAAACTTTTTGTGCC 60.818 55.000 11.45 11.45 0.00 5.01
75 76 0.107459 TGGCCCCAAACTTTTTGTGC 60.107 50.000 0.00 1.08 0.00 4.57
76 77 2.409948 TTGGCCCCAAACTTTTTGTG 57.590 45.000 0.00 0.00 32.44 3.33
77 78 3.660970 ATTTGGCCCCAAACTTTTTGT 57.339 38.095 14.23 0.00 46.80 2.83
78 79 3.950395 TCAATTTGGCCCCAAACTTTTTG 59.050 39.130 14.23 13.91 46.80 2.44
79 80 4.242336 TCAATTTGGCCCCAAACTTTTT 57.758 36.364 14.23 3.02 46.80 1.94
80 81 3.941704 TCAATTTGGCCCCAAACTTTT 57.058 38.095 14.23 3.35 46.80 2.27
81 82 3.941704 TTCAATTTGGCCCCAAACTTT 57.058 38.095 14.23 4.02 46.80 2.66
82 83 3.941704 TTTCAATTTGGCCCCAAACTT 57.058 38.095 14.23 7.80 46.80 2.66
83 84 3.393941 TGATTTCAATTTGGCCCCAAACT 59.606 39.130 14.23 1.04 46.80 2.66
84 85 3.501828 GTGATTTCAATTTGGCCCCAAAC 59.498 43.478 14.23 1.72 46.80 2.93
86 87 2.978278 AGTGATTTCAATTTGGCCCCAA 59.022 40.909 0.00 0.00 0.00 4.12
87 88 2.618794 AGTGATTTCAATTTGGCCCCA 58.381 42.857 0.00 0.00 0.00 4.96
88 89 3.701205 AAGTGATTTCAATTTGGCCCC 57.299 42.857 0.00 0.00 28.91 5.80
89 90 7.686438 AATTTAAGTGATTTCAATTTGGCCC 57.314 32.000 0.00 0.00 35.62 5.80
115 116 9.651913 CCCTTTTAGCTCTTTTAAATGCAATTA 57.348 29.630 0.00 0.00 33.67 1.40
116 117 8.156820 ACCCTTTTAGCTCTTTTAAATGCAATT 58.843 29.630 0.00 0.00 38.98 2.32
117 118 7.603784 CACCCTTTTAGCTCTTTTAAATGCAAT 59.396 33.333 0.00 0.00 0.00 3.56
118 119 6.928492 CACCCTTTTAGCTCTTTTAAATGCAA 59.072 34.615 0.00 2.35 0.00 4.08
119 120 6.041523 ACACCCTTTTAGCTCTTTTAAATGCA 59.958 34.615 0.00 0.00 0.00 3.96
120 121 6.455647 ACACCCTTTTAGCTCTTTTAAATGC 58.544 36.000 0.00 0.00 0.00 3.56
121 122 6.801862 CGACACCCTTTTAGCTCTTTTAAATG 59.198 38.462 0.00 0.00 0.00 2.32
122 123 6.489022 ACGACACCCTTTTAGCTCTTTTAAAT 59.511 34.615 0.00 0.00 0.00 1.40
123 124 5.824097 ACGACACCCTTTTAGCTCTTTTAAA 59.176 36.000 0.00 0.00 0.00 1.52
124 125 5.370679 ACGACACCCTTTTAGCTCTTTTAA 58.629 37.500 0.00 0.00 0.00 1.52
125 126 4.964593 ACGACACCCTTTTAGCTCTTTTA 58.035 39.130 0.00 0.00 0.00 1.52
126 127 3.816994 ACGACACCCTTTTAGCTCTTTT 58.183 40.909 0.00 0.00 0.00 2.27
127 128 3.487120 ACGACACCCTTTTAGCTCTTT 57.513 42.857 0.00 0.00 0.00 2.52
128 129 3.139077 CAACGACACCCTTTTAGCTCTT 58.861 45.455 0.00 0.00 0.00 2.85
129 130 2.550208 CCAACGACACCCTTTTAGCTCT 60.550 50.000 0.00 0.00 0.00 4.09
130 131 1.804748 CCAACGACACCCTTTTAGCTC 59.195 52.381 0.00 0.00 0.00 4.09
131 132 1.142262 ACCAACGACACCCTTTTAGCT 59.858 47.619 0.00 0.00 0.00 3.32
132 133 1.534163 GACCAACGACACCCTTTTAGC 59.466 52.381 0.00 0.00 0.00 3.09
133 134 2.148768 GGACCAACGACACCCTTTTAG 58.851 52.381 0.00 0.00 0.00 1.85
134 135 1.489649 TGGACCAACGACACCCTTTTA 59.510 47.619 0.00 0.00 0.00 1.52
135 136 0.256464 TGGACCAACGACACCCTTTT 59.744 50.000 0.00 0.00 0.00 2.27
136 137 0.464916 GTGGACCAACGACACCCTTT 60.465 55.000 0.00 0.00 0.00 3.11
137 138 1.147600 GTGGACCAACGACACCCTT 59.852 57.895 0.00 0.00 0.00 3.95
138 139 2.040009 CTGTGGACCAACGACACCCT 62.040 60.000 0.00 0.00 33.88 4.34
139 140 1.597027 CTGTGGACCAACGACACCC 60.597 63.158 0.00 0.00 33.88 4.61
140 141 0.463116 AACTGTGGACCAACGACACC 60.463 55.000 0.00 0.00 33.88 4.16
141 142 1.375551 AAACTGTGGACCAACGACAC 58.624 50.000 0.00 0.00 33.88 3.67
142 143 2.983907 TAAACTGTGGACCAACGACA 57.016 45.000 0.00 0.00 35.98 4.35
143 144 6.148150 TGAATATTAAACTGTGGACCAACGAC 59.852 38.462 0.00 0.00 0.00 4.34
144 145 6.231951 TGAATATTAAACTGTGGACCAACGA 58.768 36.000 0.00 0.00 0.00 3.85
145 146 6.489127 TGAATATTAAACTGTGGACCAACG 57.511 37.500 0.00 0.00 0.00 4.10
146 147 8.621286 CCTATGAATATTAAACTGTGGACCAAC 58.379 37.037 0.00 0.00 0.00 3.77
147 148 7.284489 GCCTATGAATATTAAACTGTGGACCAA 59.716 37.037 0.00 0.00 0.00 3.67
148 149 6.770785 GCCTATGAATATTAAACTGTGGACCA 59.229 38.462 0.00 0.00 0.00 4.02
149 150 6.770785 TGCCTATGAATATTAAACTGTGGACC 59.229 38.462 0.00 0.00 0.00 4.46
150 151 7.801716 TGCCTATGAATATTAAACTGTGGAC 57.198 36.000 0.00 0.00 0.00 4.02
151 152 8.995027 AATGCCTATGAATATTAAACTGTGGA 57.005 30.769 0.00 0.00 0.00 4.02
164 165 9.657419 CTGGAAACTTTTAAAATGCCTATGAAT 57.343 29.630 0.09 0.00 0.00 2.57
165 166 8.865090 TCTGGAAACTTTTAAAATGCCTATGAA 58.135 29.630 0.09 0.00 0.00 2.57
166 167 8.415950 TCTGGAAACTTTTAAAATGCCTATGA 57.584 30.769 0.09 0.00 0.00 2.15
167 168 9.487790 TTTCTGGAAACTTTTAAAATGCCTATG 57.512 29.630 0.09 0.00 0.00 2.23
169 170 9.892130 TTTTTCTGGAAACTTTTAAAATGCCTA 57.108 25.926 0.09 0.00 0.00 3.93
170 171 8.800370 TTTTTCTGGAAACTTTTAAAATGCCT 57.200 26.923 0.09 0.00 0.00 4.75
195 196 9.231297 ACATAACTGTCATACATTAGCAAAGTT 57.769 29.630 0.00 0.00 0.00 2.66
196 197 8.792830 ACATAACTGTCATACATTAGCAAAGT 57.207 30.769 0.00 0.00 0.00 2.66
198 199 9.884636 ACTACATAACTGTCATACATTAGCAAA 57.115 29.630 0.00 0.00 36.79 3.68
199 200 9.313118 CACTACATAACTGTCATACATTAGCAA 57.687 33.333 0.00 0.00 36.79 3.91
200 201 8.691797 TCACTACATAACTGTCATACATTAGCA 58.308 33.333 0.00 0.00 36.79 3.49
201 202 9.529325 TTCACTACATAACTGTCATACATTAGC 57.471 33.333 0.00 0.00 36.79 3.09
222 223 8.934023 TGTTCCTTAGGTTGAAAATATTCACT 57.066 30.769 0.00 0.00 45.01 3.41
266 267 9.658475 CGAATGCCAAGTCGAATTATAATTTTA 57.342 29.630 11.92 1.38 46.43 1.52
267 268 8.560576 CGAATGCCAAGTCGAATTATAATTTT 57.439 30.769 11.92 0.15 46.43 1.82
279 280 2.161410 TCCAAATTCGAATGCCAAGTCG 59.839 45.455 12.25 0.00 44.93 4.18
280 281 3.848272 TCCAAATTCGAATGCCAAGTC 57.152 42.857 12.25 0.00 0.00 3.01
281 282 4.806640 AATCCAAATTCGAATGCCAAGT 57.193 36.364 12.25 0.00 0.00 3.16
282 283 5.170021 TCAAATCCAAATTCGAATGCCAAG 58.830 37.500 12.25 0.00 0.00 3.61
283 284 5.144692 TCAAATCCAAATTCGAATGCCAA 57.855 34.783 12.25 0.00 0.00 4.52
284 285 4.220382 ACTCAAATCCAAATTCGAATGCCA 59.780 37.500 12.25 0.00 0.00 4.92
285 286 4.747810 ACTCAAATCCAAATTCGAATGCC 58.252 39.130 12.25 0.00 0.00 4.40
286 287 6.710692 AAACTCAAATCCAAATTCGAATGC 57.289 33.333 12.25 0.00 0.00 3.56
287 288 7.171337 ACCAAAACTCAAATCCAAATTCGAATG 59.829 33.333 12.25 1.06 0.00 2.67
288 289 7.216494 ACCAAAACTCAAATCCAAATTCGAAT 58.784 30.769 4.39 4.39 0.00 3.34
289 290 6.578023 ACCAAAACTCAAATCCAAATTCGAA 58.422 32.000 0.00 0.00 0.00 3.71
290 291 6.155475 ACCAAAACTCAAATCCAAATTCGA 57.845 33.333 0.00 0.00 0.00 3.71
291 292 6.843069 AACCAAAACTCAAATCCAAATTCG 57.157 33.333 0.00 0.00 0.00 3.34
292 293 8.207521 TCAAACCAAAACTCAAATCCAAATTC 57.792 30.769 0.00 0.00 0.00 2.17
293 294 8.572855 TTCAAACCAAAACTCAAATCCAAATT 57.427 26.923 0.00 0.00 0.00 1.82
294 295 8.458052 GTTTCAAACCAAAACTCAAATCCAAAT 58.542 29.630 0.00 0.00 34.51 2.32
295 296 7.360438 CGTTTCAAACCAAAACTCAAATCCAAA 60.360 33.333 0.00 0.00 35.04 3.28
296 297 6.091441 CGTTTCAAACCAAAACTCAAATCCAA 59.909 34.615 0.00 0.00 35.04 3.53
297 298 5.578727 CGTTTCAAACCAAAACTCAAATCCA 59.421 36.000 0.00 0.00 35.04 3.41
298 299 5.006261 CCGTTTCAAACCAAAACTCAAATCC 59.994 40.000 0.00 0.00 35.04 3.01
299 300 5.808030 TCCGTTTCAAACCAAAACTCAAATC 59.192 36.000 0.00 0.00 35.04 2.17
300 301 5.725362 TCCGTTTCAAACCAAAACTCAAAT 58.275 33.333 0.00 0.00 35.04 2.32
301 302 5.135508 TCCGTTTCAAACCAAAACTCAAA 57.864 34.783 0.00 0.00 35.04 2.69
302 303 4.785511 TCCGTTTCAAACCAAAACTCAA 57.214 36.364 0.00 0.00 35.04 3.02
303 304 4.785511 TTCCGTTTCAAACCAAAACTCA 57.214 36.364 0.00 0.00 35.04 3.41
304 305 5.404096 TCTTTCCGTTTCAAACCAAAACTC 58.596 37.500 0.00 0.00 35.04 3.01
305 306 5.394224 TCTTTCCGTTTCAAACCAAAACT 57.606 34.783 0.00 0.00 35.04 2.66
306 307 4.565166 CCTCTTTCCGTTTCAAACCAAAAC 59.435 41.667 0.00 0.00 34.09 2.43
307 308 4.463186 TCCTCTTTCCGTTTCAAACCAAAA 59.537 37.500 0.00 0.00 0.00 2.44
308 309 4.017808 TCCTCTTTCCGTTTCAAACCAAA 58.982 39.130 0.00 0.00 0.00 3.28
309 310 3.622630 TCCTCTTTCCGTTTCAAACCAA 58.377 40.909 0.00 0.00 0.00 3.67
310 311 3.284793 TCCTCTTTCCGTTTCAAACCA 57.715 42.857 0.00 0.00 0.00 3.67
311 312 4.848562 AATCCTCTTTCCGTTTCAAACC 57.151 40.909 0.00 0.00 0.00 3.27
312 313 6.555812 ACTAATCCTCTTTCCGTTTCAAAC 57.444 37.500 0.00 0.00 0.00 2.93
313 314 8.680039 TTTACTAATCCTCTTTCCGTTTCAAA 57.320 30.769 0.00 0.00 0.00 2.69
314 315 8.680039 TTTTACTAATCCTCTTTCCGTTTCAA 57.320 30.769 0.00 0.00 0.00 2.69
315 316 8.726988 CATTTTACTAATCCTCTTTCCGTTTCA 58.273 33.333 0.00 0.00 0.00 2.69
316 317 8.943002 TCATTTTACTAATCCTCTTTCCGTTTC 58.057 33.333 0.00 0.00 0.00 2.78
317 318 8.857694 TCATTTTACTAATCCTCTTTCCGTTT 57.142 30.769 0.00 0.00 0.00 3.60
318 319 9.462606 AATCATTTTACTAATCCTCTTTCCGTT 57.537 29.630 0.00 0.00 0.00 4.44
347 348 5.878669 TCATGCCTAATGATGCTATGTCATC 59.121 40.000 0.00 0.00 40.50 2.92
348 349 5.812286 TCATGCCTAATGATGCTATGTCAT 58.188 37.500 0.00 0.00 40.50 3.06
349 350 5.012354 TCTCATGCCTAATGATGCTATGTCA 59.988 40.000 0.00 0.00 44.40 3.58
350 351 5.485620 TCTCATGCCTAATGATGCTATGTC 58.514 41.667 0.00 0.00 44.40 3.06
351 352 5.494390 TCTCATGCCTAATGATGCTATGT 57.506 39.130 0.00 0.00 44.40 2.29
352 353 7.769507 AGTAATCTCATGCCTAATGATGCTATG 59.230 37.037 0.00 0.00 44.40 2.23
353 354 7.769507 CAGTAATCTCATGCCTAATGATGCTAT 59.230 37.037 0.00 0.00 44.40 2.97
354 355 7.101700 CAGTAATCTCATGCCTAATGATGCTA 58.898 38.462 0.00 0.00 44.40 3.49
355 356 5.938710 CAGTAATCTCATGCCTAATGATGCT 59.061 40.000 0.00 0.00 44.40 3.79
356 357 5.704515 ACAGTAATCTCATGCCTAATGATGC 59.295 40.000 0.00 0.00 44.40 3.91
357 358 7.064371 GCTACAGTAATCTCATGCCTAATGATG 59.936 40.741 0.00 0.00 44.40 3.07
358 359 7.102346 GCTACAGTAATCTCATGCCTAATGAT 58.898 38.462 0.00 0.00 44.40 2.45
359 360 6.041979 TGCTACAGTAATCTCATGCCTAATGA 59.958 38.462 0.00 0.00 43.24 2.57
360 361 6.226052 TGCTACAGTAATCTCATGCCTAATG 58.774 40.000 0.00 0.00 37.66 1.90
361 362 6.425210 TGCTACAGTAATCTCATGCCTAAT 57.575 37.500 0.00 0.00 0.00 1.73
362 363 5.869649 TGCTACAGTAATCTCATGCCTAA 57.130 39.130 0.00 0.00 0.00 2.69
363 364 5.539955 TCATGCTACAGTAATCTCATGCCTA 59.460 40.000 0.00 0.00 33.39 3.93
364 365 4.346127 TCATGCTACAGTAATCTCATGCCT 59.654 41.667 0.00 0.00 33.39 4.75
365 366 4.450419 GTCATGCTACAGTAATCTCATGCC 59.550 45.833 0.00 0.00 33.39 4.40
366 367 5.052481 TGTCATGCTACAGTAATCTCATGC 58.948 41.667 0.00 0.00 33.39 4.06
367 368 6.089150 CGATGTCATGCTACAGTAATCTCATG 59.911 42.308 0.00 0.00 34.32 3.07
368 369 6.155136 CGATGTCATGCTACAGTAATCTCAT 58.845 40.000 0.00 0.00 31.70 2.90
369 370 5.507985 CCGATGTCATGCTACAGTAATCTCA 60.508 44.000 0.00 0.00 31.70 3.27
370 371 4.920340 CCGATGTCATGCTACAGTAATCTC 59.080 45.833 0.00 0.00 31.70 2.75
371 372 4.262207 CCCGATGTCATGCTACAGTAATCT 60.262 45.833 0.00 0.00 31.70 2.40
372 373 3.990469 CCCGATGTCATGCTACAGTAATC 59.010 47.826 0.00 0.00 31.70 1.75
373 374 3.244215 CCCCGATGTCATGCTACAGTAAT 60.244 47.826 0.00 0.00 31.70 1.89
374 375 2.102420 CCCCGATGTCATGCTACAGTAA 59.898 50.000 0.00 0.00 31.70 2.24
375 376 1.686587 CCCCGATGTCATGCTACAGTA 59.313 52.381 0.00 0.00 31.70 2.74
376 377 0.465705 CCCCGATGTCATGCTACAGT 59.534 55.000 0.00 0.00 31.70 3.55
377 378 0.250038 CCCCCGATGTCATGCTACAG 60.250 60.000 0.00 0.00 31.70 2.74
378 379 0.980754 ACCCCCGATGTCATGCTACA 60.981 55.000 0.00 0.00 0.00 2.74
379 380 0.532862 CACCCCCGATGTCATGCTAC 60.533 60.000 0.00 0.00 0.00 3.58
380 381 0.980754 ACACCCCCGATGTCATGCTA 60.981 55.000 0.00 0.00 0.00 3.49
381 382 1.852157 AACACCCCCGATGTCATGCT 61.852 55.000 0.00 0.00 0.00 3.79
382 383 0.107410 TAACACCCCCGATGTCATGC 60.107 55.000 0.00 0.00 0.00 4.06
383 384 1.065782 TGTAACACCCCCGATGTCATG 60.066 52.381 0.00 0.00 0.00 3.07
384 385 1.065709 GTGTAACACCCCCGATGTCAT 60.066 52.381 0.00 0.00 36.32 3.06
385 386 0.322322 GTGTAACACCCCCGATGTCA 59.678 55.000 0.00 0.00 36.32 3.58
386 387 0.611714 AGTGTAACACCCCCGATGTC 59.388 55.000 0.00 0.00 41.43 3.06
387 388 1.061546 AAGTGTAACACCCCCGATGT 58.938 50.000 0.00 0.00 41.43 3.06
388 389 1.271163 ACAAGTGTAACACCCCCGATG 60.271 52.381 0.00 0.00 41.43 3.84
389 390 1.061546 ACAAGTGTAACACCCCCGAT 58.938 50.000 0.00 0.00 41.43 4.18
390 391 1.344114 GTACAAGTGTAACACCCCCGA 59.656 52.381 0.00 0.00 41.43 5.14
391 392 1.070445 TGTACAAGTGTAACACCCCCG 59.930 52.381 0.00 0.00 41.43 5.73
392 393 2.934886 TGTACAAGTGTAACACCCCC 57.065 50.000 0.00 0.00 41.43 5.40
393 394 6.094464 GGAATATTGTACAAGTGTAACACCCC 59.906 42.308 14.65 1.13 41.43 4.95
394 395 6.882678 AGGAATATTGTACAAGTGTAACACCC 59.117 38.462 14.65 5.61 41.43 4.61
395 396 7.916914 AGGAATATTGTACAAGTGTAACACC 57.083 36.000 14.65 8.82 41.43 4.16
396 397 8.876790 GGTAGGAATATTGTACAAGTGTAACAC 58.123 37.037 14.65 7.14 41.43 3.32
397 398 8.042515 GGGTAGGAATATTGTACAAGTGTAACA 58.957 37.037 14.65 0.00 41.43 2.41
398 399 8.262933 AGGGTAGGAATATTGTACAAGTGTAAC 58.737 37.037 14.65 6.18 31.52 2.50
399 400 8.383374 AGGGTAGGAATATTGTACAAGTGTAA 57.617 34.615 14.65 0.00 31.52 2.41
400 401 7.983166 AGGGTAGGAATATTGTACAAGTGTA 57.017 36.000 14.65 2.15 0.00 2.90
401 402 6.886178 AGGGTAGGAATATTGTACAAGTGT 57.114 37.500 14.65 0.00 0.00 3.55
402 403 7.280205 GTCAAGGGTAGGAATATTGTACAAGTG 59.720 40.741 14.65 0.00 0.00 3.16
413 414 7.626084 TCTCCTTTTATGTCAAGGGTAGGAATA 59.374 37.037 0.00 0.00 41.25 1.75
525 552 9.319143 GAACAAGCTGATAGTAATCTTGTACAT 57.681 33.333 0.00 0.00 44.35 2.29
533 560 8.983724 GGTAAGATGAACAAGCTGATAGTAATC 58.016 37.037 0.00 0.00 0.00 1.75
609 638 7.988737 TCAGGCAAGTATTCTGATATTTGTTG 58.011 34.615 0.00 4.15 37.61 3.33
616 645 8.891985 AGATAGATCAGGCAAGTATTCTGATA 57.108 34.615 5.22 0.00 45.10 2.15
794 887 9.593565 TGTACATATCATCTAAGAGTGAGGAAT 57.406 33.333 0.00 0.00 0.00 3.01
1010 1109 3.303395 GCTTGTGCTCTAGTTGTGTGAAC 60.303 47.826 0.00 0.00 36.03 3.18
1035 1135 8.427774 GCGTTAACTACTACGTACTTTGATTTT 58.572 33.333 3.71 0.00 39.80 1.82
1041 1141 7.062255 GGATTTGCGTTAACTACTACGTACTTT 59.938 37.037 3.71 0.00 39.80 2.66
1165 1265 3.047115 TGGGGGACTAGTTGTTGTTGTA 58.953 45.455 0.00 0.00 0.00 2.41
1189 1292 1.410083 GCTGGGATAATGGCTGTTGGA 60.410 52.381 0.00 0.00 0.00 3.53
1235 1386 3.251016 TGATGGGGGAATGTTTGTTGA 57.749 42.857 0.00 0.00 0.00 3.18
1491 2089 0.385390 GGTTGTTGTGGTTGCTGGAG 59.615 55.000 0.00 0.00 0.00 3.86
1580 2200 7.119699 TGTTGTAGAGATGGTTGAATGAATGAC 59.880 37.037 0.00 0.00 0.00 3.06
1881 2585 0.325671 CCCTGGCCTTGGACTAGAGA 60.326 60.000 15.51 0.00 0.00 3.10
1886 2590 2.943265 ATGCCCTGGCCTTGGACT 60.943 61.111 14.52 0.00 41.09 3.85
1913 2617 2.624838 CTCCAATTGAGCTGGTTGTTGT 59.375 45.455 7.12 0.00 35.30 3.32
1943 2647 5.716228 TGGAAGAGTTTGCAATACCAATGAT 59.284 36.000 0.00 0.00 31.17 2.45
1968 2672 2.073056 GACATACACGTTGCACATGGA 58.927 47.619 0.00 0.00 0.00 3.41
1994 2698 1.129917 CCCTCATGATGGAGCACTCT 58.870 55.000 11.36 0.00 33.47 3.24
2141 2891 1.202794 TGTCACACATGATGGTGCACT 60.203 47.619 17.98 0.00 42.55 4.40
2161 2911 1.764571 TTGAACTAGCACTGGCCGGT 61.765 55.000 12.85 12.85 42.56 5.28
2165 2915 1.198637 CAAGCTTGAACTAGCACTGGC 59.801 52.381 22.31 0.00 43.68 4.85
2308 3063 0.698238 ACATAGGAACCTGCTGGCAA 59.302 50.000 9.95 0.00 36.63 4.52
2313 3068 4.281182 CGGTAGATTACATAGGAACCTGCT 59.719 45.833 3.36 0.00 0.00 4.24
2354 3109 4.576053 TCAATCGGCCTATGAACAAGATTG 59.424 41.667 14.48 14.48 42.57 2.67
2364 3119 8.722480 TCAATTAATAGATCAATCGGCCTATG 57.278 34.615 0.00 0.00 0.00 2.23
2509 3264 4.971282 AGTGATGGATGGTTCCTAATCAGA 59.029 41.667 0.00 0.00 43.07 3.27
2593 8133 9.399403 GTACCTTAAAGAATTGCTTTGAAGAAG 57.601 33.333 0.00 0.00 46.03 2.85
2614 8155 5.073144 TGATTTTCACCTCTTTGGAGTACCT 59.927 40.000 0.00 0.00 37.86 3.08
2617 8158 7.060421 AGTTTGATTTTCACCTCTTTGGAGTA 58.940 34.615 0.00 0.00 37.86 2.59
2680 8221 7.876936 ATCATGACTCAATATTTGCTCTTGT 57.123 32.000 0.00 0.00 0.00 3.16
2751 8292 5.104360 TGTCTCTCTAAATTTCCCCCATCTG 60.104 44.000 0.00 0.00 0.00 2.90
2916 10193 4.033009 TCTCCTTGGAGTTCATATCAGCA 58.967 43.478 15.44 0.00 0.00 4.41
2921 10198 7.443302 TTTCTCATCTCCTTGGAGTTCATAT 57.557 36.000 15.44 0.00 0.00 1.78
2926 10203 5.768980 TGATTTCTCATCTCCTTGGAGTT 57.231 39.130 15.44 5.58 0.00 3.01
3012 10292 9.736023 ATTTTCAGCTTTAACTTTGTAAGACAG 57.264 29.630 0.00 0.00 0.00 3.51
3042 10323 7.721842 TGTCTTTCAAAGTGTCCAATGGTTATA 59.278 33.333 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.