Multiple sequence alignment - TraesCS1B01G480900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G480900 chr1B 100.000 3046 0 0 1 3046 688709190 688706145 0.000000e+00 5626.0
1 TraesCS1B01G480900 chr1B 85.827 508 42 10 875 1360 673177599 673177100 2.090000e-141 512.0
2 TraesCS1B01G480900 chr1B 78.976 547 59 33 1889 2401 673176849 673176325 3.790000e-84 322.0
3 TraesCS1B01G480900 chr1B 94.928 138 5 2 1354 1490 3935842 3935978 6.610000e-52 215.0
4 TraesCS1B01G480900 chr1B 89.726 146 7 4 1741 1886 688707372 688707235 2.410000e-41 180.0
5 TraesCS1B01G480900 chr1B 89.726 146 7 4 1819 1956 688707450 688707305 2.410000e-41 180.0
6 TraesCS1B01G480900 chr1D 96.962 1185 15 6 190 1374 492946899 492948062 0.000000e+00 1969.0
7 TraesCS1B01G480900 chr1D 93.994 666 21 6 2383 3046 492949108 492949756 0.000000e+00 990.0
8 TraesCS1B01G480900 chr1D 93.819 631 14 8 1819 2440 492948496 492949110 0.000000e+00 926.0
9 TraesCS1B01G480900 chr1D 81.712 1110 147 32 282 1360 483146702 483145618 0.000000e+00 874.0
10 TraesCS1B01G480900 chr1D 93.103 290 13 3 1465 1753 492948110 492948393 4.700000e-113 418.0
11 TraesCS1B01G480900 chr1D 79.777 539 46 35 1889 2401 483145367 483144866 1.750000e-87 333.0
12 TraesCS1B01G480900 chr1D 96.552 145 4 1 1739 1883 492948494 492948637 3.920000e-59 239.0
13 TraesCS1B01G480900 chr1D 88.889 72 1 3 1889 1953 492948496 492948567 7.000000e-12 82.4
14 TraesCS1B01G480900 chr1A 80.328 1159 157 38 237 1360 579866263 579865141 0.000000e+00 811.0
15 TraesCS1B01G480900 chr1A 81.803 588 53 32 1889 2450 579864890 579864331 7.750000e-121 444.0
16 TraesCS1B01G480900 chr1A 98.171 164 3 0 8 171 57172854 57172691 1.380000e-73 287.0
17 TraesCS1B01G480900 chr2A 100.000 168 0 0 6 173 42017670 42017503 8.200000e-81 311.0
18 TraesCS1B01G480900 chr2A 98.837 172 1 1 3 173 624357685 624357514 3.820000e-79 305.0
19 TraesCS1B01G480900 chr2A 99.401 167 1 0 8 174 737320279 737320113 1.370000e-78 303.0
20 TraesCS1B01G480900 chr2A 94.964 139 7 0 1347 1485 389218512 389218650 5.110000e-53 219.0
21 TraesCS1B01G480900 chr2A 92.810 153 7 4 1356 1506 444077727 444077877 5.110000e-53 219.0
22 TraesCS1B01G480900 chr2A 90.964 166 5 3 2767 2923 12124287 12124123 6.610000e-52 215.0
23 TraesCS1B01G480900 chr2A 86.585 164 13 3 2768 2923 714735459 714735297 4.040000e-39 172.0
24 TraesCS1B01G480900 chr2A 82.927 164 19 3 2768 2923 12123859 12124021 4.100000e-29 139.0
25 TraesCS1B01G480900 chr6B 98.830 171 2 0 3 173 288944537 288944367 3.820000e-79 305.0
26 TraesCS1B01G480900 chr4A 99.390 164 1 0 8 171 597834642 597834479 6.380000e-77 298.0
27 TraesCS1B01G480900 chr6D 95.210 167 7 1 4 170 336208245 336208410 2.330000e-66 263.0
28 TraesCS1B01G480900 chr5B 93.750 176 10 1 5 180 209212683 209212509 2.330000e-66 263.0
29 TraesCS1B01G480900 chr5B 100.000 131 0 0 1357 1487 554637921 554637791 3.030000e-60 243.0
30 TraesCS1B01G480900 chr3A 96.296 135 5 0 1349 1483 182639713 182639579 3.950000e-54 222.0
31 TraesCS1B01G480900 chr3A 96.296 135 4 1 1353 1486 38671380 38671246 1.420000e-53 220.0
32 TraesCS1B01G480900 chr5D 95.652 138 4 2 1356 1492 223020789 223020653 1.420000e-53 220.0
33 TraesCS1B01G480900 chr5D 94.286 140 8 0 1347 1486 409358385 409358246 6.610000e-52 215.0
34 TraesCS1B01G480900 chr5A 95.620 137 6 0 1348 1484 154345668 154345532 1.420000e-53 220.0
35 TraesCS1B01G480900 chr7D 89.349 169 17 1 5 173 30913423 30913256 8.560000e-51 211.0
36 TraesCS1B01G480900 chr2D 90.303 165 7 4 2767 2923 11517236 11517073 1.110000e-49 207.0
37 TraesCS1B01G480900 chr2D 77.301 163 23 8 2766 2918 306560695 306560853 1.950000e-12 84.2
38 TraesCS1B01G480900 chr2D 84.000 75 11 1 2843 2916 608864197 608864271 1.520000e-08 71.3
39 TraesCS1B01G480900 chr7A 87.261 157 17 3 2767 2923 628228574 628228421 3.120000e-40 176.0
40 TraesCS1B01G480900 chr4D 86.164 159 14 4 2766 2916 446650937 446651095 6.760000e-37 165.0
41 TraesCS1B01G480900 chr4D 84.337 83 8 3 2843 2923 61127932 61128011 3.260000e-10 76.8
42 TraesCS1B01G480900 chr2B 84.314 153 12 4 2782 2923 381317778 381317627 4.100000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G480900 chr1B 688706145 688709190 3045 True 1995.333333 5626 93.150667 1 3046 3 chr1B.!!$R2 3045
1 TraesCS1B01G480900 chr1B 673176325 673177599 1274 True 417.000000 512 82.401500 875 2401 2 chr1B.!!$R1 1526
2 TraesCS1B01G480900 chr1D 492946899 492949756 2857 False 770.733333 1969 93.886500 190 3046 6 chr1D.!!$F1 2856
3 TraesCS1B01G480900 chr1D 483144866 483146702 1836 True 603.500000 874 80.744500 282 2401 2 chr1D.!!$R1 2119
4 TraesCS1B01G480900 chr1A 579864331 579866263 1932 True 627.500000 811 81.065500 237 2450 2 chr1A.!!$R2 2213

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.034477 ATCCAAACAGGGCCTTACCG 60.034 55.0 1.32 0.0 40.62 4.02 F
186 187 0.179108 GCCTTACCGGTAGCAGACTG 60.179 60.0 18.29 0.0 34.25 3.51 F
1857 2013 0.035317 TGGAATCACGCTGCTTCTGT 59.965 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1994 0.035317 ACAGAAGCAGCGTGATTCCA 59.965 50.0 10.82 0.00 43.24 3.53 R
1863 2019 0.036732 TGCCTCTTTGCGTTCTCCAT 59.963 50.0 0.00 0.00 0.00 3.41 R
2748 2998 0.320247 CCCTCTGGCTATAGCAAGCG 60.320 60.0 25.53 18.45 41.84 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.243902 TTTCTTTAGGCACCGCTTGG 58.756 50.000 0.00 0.00 39.35 3.61
20 21 0.398696 TTCTTTAGGCACCGCTTGGA 59.601 50.000 0.00 0.00 36.26 3.53
21 22 0.398696 TCTTTAGGCACCGCTTGGAA 59.601 50.000 0.00 0.00 36.26 3.53
22 23 1.004277 TCTTTAGGCACCGCTTGGAAT 59.996 47.619 0.00 0.00 36.26 3.01
23 24 1.133025 CTTTAGGCACCGCTTGGAATG 59.867 52.381 0.00 0.00 36.26 2.67
24 25 0.679640 TTAGGCACCGCTTGGAATGG 60.680 55.000 0.00 0.00 36.26 3.16
25 26 2.550699 TAGGCACCGCTTGGAATGGG 62.551 60.000 0.00 0.00 36.26 4.00
27 28 2.755469 CACCGCTTGGAATGGGGG 60.755 66.667 0.00 0.00 46.63 5.40
28 29 3.264845 ACCGCTTGGAATGGGGGT 61.265 61.111 0.00 0.00 46.63 4.95
29 30 1.926489 ACCGCTTGGAATGGGGGTA 60.926 57.895 0.00 0.00 46.63 3.69
30 31 1.304952 CCGCTTGGAATGGGGGTAA 59.695 57.895 0.00 0.00 39.95 2.85
31 32 0.106217 CCGCTTGGAATGGGGGTAAT 60.106 55.000 0.00 0.00 39.95 1.89
32 33 1.687996 CCGCTTGGAATGGGGGTAATT 60.688 52.381 0.00 0.00 39.95 1.40
33 34 2.107366 CGCTTGGAATGGGGGTAATTT 58.893 47.619 0.00 0.00 0.00 1.82
34 35 2.499693 CGCTTGGAATGGGGGTAATTTT 59.500 45.455 0.00 0.00 0.00 1.82
35 36 3.702045 CGCTTGGAATGGGGGTAATTTTA 59.298 43.478 0.00 0.00 0.00 1.52
36 37 4.343814 CGCTTGGAATGGGGGTAATTTTAT 59.656 41.667 0.00 0.00 0.00 1.40
37 38 5.536916 CGCTTGGAATGGGGGTAATTTTATA 59.463 40.000 0.00 0.00 0.00 0.98
38 39 6.516028 CGCTTGGAATGGGGGTAATTTTATAC 60.516 42.308 0.00 0.00 0.00 1.47
39 40 6.516028 GCTTGGAATGGGGGTAATTTTATACG 60.516 42.308 0.00 0.00 0.00 3.06
40 41 4.828387 TGGAATGGGGGTAATTTTATACGC 59.172 41.667 0.00 0.00 37.84 4.42
41 42 4.083164 GGAATGGGGGTAATTTTATACGCG 60.083 45.833 3.53 3.53 39.04 6.01
42 43 3.557228 TGGGGGTAATTTTATACGCGT 57.443 42.857 19.17 19.17 39.04 6.01
43 44 3.204526 TGGGGGTAATTTTATACGCGTG 58.795 45.455 24.59 0.00 39.04 5.34
44 45 3.205338 GGGGGTAATTTTATACGCGTGT 58.795 45.455 24.59 19.31 39.04 4.49
45 46 4.141846 TGGGGGTAATTTTATACGCGTGTA 60.142 41.667 24.59 18.01 39.04 2.90
46 47 4.996758 GGGGGTAATTTTATACGCGTGTAT 59.003 41.667 24.59 23.84 43.62 2.29
47 48 5.469760 GGGGGTAATTTTATACGCGTGTATT 59.530 40.000 25.31 14.40 41.50 1.89
48 49 6.017192 GGGGGTAATTTTATACGCGTGTATTT 60.017 38.462 25.31 15.95 41.50 1.40
49 50 7.172361 GGGGGTAATTTTATACGCGTGTATTTA 59.828 37.037 25.31 15.03 41.50 1.40
50 51 8.720562 GGGGTAATTTTATACGCGTGTATTTAT 58.279 33.333 25.31 8.76 41.50 1.40
58 59 8.732413 TTATACGCGTGTATTTATTCTACAGG 57.268 34.615 25.31 0.00 41.50 4.00
59 60 5.002464 ACGCGTGTATTTATTCTACAGGT 57.998 39.130 12.93 0.00 37.32 4.00
60 61 4.802039 ACGCGTGTATTTATTCTACAGGTG 59.198 41.667 12.93 12.49 44.67 4.00
61 62 4.802039 CGCGTGTATTTATTCTACAGGTGT 59.198 41.667 0.00 0.00 39.13 4.16
62 63 5.972973 CGCGTGTATTTATTCTACAGGTGTA 59.027 40.000 0.00 0.00 39.13 2.90
63 64 6.473131 CGCGTGTATTTATTCTACAGGTGTAA 59.527 38.462 0.00 0.00 39.13 2.41
64 65 7.305820 CGCGTGTATTTATTCTACAGGTGTAAG 60.306 40.741 0.00 0.00 39.13 2.34
65 66 7.490402 GCGTGTATTTATTCTACAGGTGTAAGT 59.510 37.037 0.00 0.00 37.32 2.24
66 67 9.362539 CGTGTATTTATTCTACAGGTGTAAGTT 57.637 33.333 0.00 0.00 32.84 2.66
71 72 9.886132 ATTTATTCTACAGGTGTAAGTTACAGG 57.114 33.333 16.03 10.99 39.77 4.00
72 73 6.930068 ATTCTACAGGTGTAAGTTACAGGT 57.070 37.500 16.03 15.58 39.77 4.00
73 74 5.972107 TCTACAGGTGTAAGTTACAGGTC 57.028 43.478 16.03 8.96 39.77 3.85
74 75 5.387788 TCTACAGGTGTAAGTTACAGGTCA 58.612 41.667 16.03 3.72 39.77 4.02
75 76 5.834742 TCTACAGGTGTAAGTTACAGGTCAA 59.165 40.000 16.03 2.19 39.77 3.18
76 77 4.700700 ACAGGTGTAAGTTACAGGTCAAC 58.299 43.478 16.03 3.50 39.77 3.18
77 78 4.162698 ACAGGTGTAAGTTACAGGTCAACA 59.837 41.667 16.03 0.00 39.77 3.33
78 79 4.750098 CAGGTGTAAGTTACAGGTCAACAG 59.250 45.833 16.03 0.00 39.77 3.16
79 80 4.407945 AGGTGTAAGTTACAGGTCAACAGT 59.592 41.667 16.03 0.00 39.77 3.55
80 81 5.104652 AGGTGTAAGTTACAGGTCAACAGTT 60.105 40.000 16.03 0.00 39.77 3.16
81 82 6.098695 AGGTGTAAGTTACAGGTCAACAGTTA 59.901 38.462 16.03 0.00 39.77 2.24
82 83 6.762661 GGTGTAAGTTACAGGTCAACAGTTAA 59.237 38.462 16.03 0.00 39.77 2.01
83 84 7.042254 GGTGTAAGTTACAGGTCAACAGTTAAG 60.042 40.741 16.03 0.00 39.77 1.85
84 85 7.707893 GTGTAAGTTACAGGTCAACAGTTAAGA 59.292 37.037 16.03 0.00 39.77 2.10
85 86 8.426489 TGTAAGTTACAGGTCAACAGTTAAGAT 58.574 33.333 11.75 0.00 34.06 2.40
86 87 7.964604 AAGTTACAGGTCAACAGTTAAGATC 57.035 36.000 0.00 0.00 0.00 2.75
87 88 7.062749 AGTTACAGGTCAACAGTTAAGATCA 57.937 36.000 0.00 0.00 0.00 2.92
88 89 7.155328 AGTTACAGGTCAACAGTTAAGATCAG 58.845 38.462 0.00 0.00 0.00 2.90
89 90 4.319177 ACAGGTCAACAGTTAAGATCAGC 58.681 43.478 0.00 0.00 0.00 4.26
90 91 3.686726 CAGGTCAACAGTTAAGATCAGCC 59.313 47.826 0.00 0.00 0.00 4.85
91 92 3.584848 AGGTCAACAGTTAAGATCAGCCT 59.415 43.478 0.00 0.00 0.00 4.58
92 93 3.686726 GGTCAACAGTTAAGATCAGCCTG 59.313 47.826 0.00 0.00 0.00 4.85
93 94 4.563580 GGTCAACAGTTAAGATCAGCCTGA 60.564 45.833 0.00 0.00 0.00 3.86
94 95 4.997395 GTCAACAGTTAAGATCAGCCTGAA 59.003 41.667 0.00 0.00 0.00 3.02
95 96 5.470098 GTCAACAGTTAAGATCAGCCTGAAA 59.530 40.000 0.00 0.00 0.00 2.69
96 97 6.150140 GTCAACAGTTAAGATCAGCCTGAAAT 59.850 38.462 0.00 0.00 0.00 2.17
97 98 6.149973 TCAACAGTTAAGATCAGCCTGAAATG 59.850 38.462 0.00 0.00 30.93 2.32
98 99 5.809001 ACAGTTAAGATCAGCCTGAAATGA 58.191 37.500 0.00 0.00 29.67 2.57
99 100 6.240894 ACAGTTAAGATCAGCCTGAAATGAA 58.759 36.000 0.00 0.00 29.67 2.57
100 101 6.716628 ACAGTTAAGATCAGCCTGAAATGAAA 59.283 34.615 0.00 0.00 29.67 2.69
101 102 7.231317 ACAGTTAAGATCAGCCTGAAATGAAAA 59.769 33.333 0.00 0.00 29.67 2.29
102 103 7.540055 CAGTTAAGATCAGCCTGAAATGAAAAC 59.460 37.037 0.00 0.00 26.90 2.43
103 104 4.691860 AGATCAGCCTGAAATGAAAACG 57.308 40.909 0.00 0.00 0.00 3.60
104 105 4.326826 AGATCAGCCTGAAATGAAAACGA 58.673 39.130 0.00 0.00 0.00 3.85
105 106 4.761739 AGATCAGCCTGAAATGAAAACGAA 59.238 37.500 0.00 0.00 0.00 3.85
106 107 4.223320 TCAGCCTGAAATGAAAACGAAC 57.777 40.909 0.00 0.00 0.00 3.95
107 108 3.004315 TCAGCCTGAAATGAAAACGAACC 59.996 43.478 0.00 0.00 0.00 3.62
108 109 2.031157 AGCCTGAAATGAAAACGAACCG 60.031 45.455 0.00 0.00 0.00 4.44
109 110 2.920647 GCCTGAAATGAAAACGAACCGG 60.921 50.000 0.00 0.00 0.00 5.28
110 111 2.550606 CCTGAAATGAAAACGAACCGGA 59.449 45.455 9.46 0.00 0.00 5.14
111 112 3.364964 CCTGAAATGAAAACGAACCGGAG 60.365 47.826 9.46 0.76 0.00 4.63
130 131 4.015764 GGAGGAGGTCCGTATCTTATACC 58.984 52.174 0.00 0.00 42.08 2.73
131 132 3.683802 AGGAGGTCCGTATCTTATACCG 58.316 50.000 0.00 0.00 42.08 4.02
132 133 2.751806 GGAGGTCCGTATCTTATACCGG 59.248 54.545 0.00 0.00 41.75 5.28
133 134 2.163211 GAGGTCCGTATCTTATACCGGC 59.837 54.545 0.00 0.00 40.23 6.13
134 135 1.203287 GGTCCGTATCTTATACCGGCC 59.797 57.143 0.00 0.00 40.23 6.13
135 136 1.888512 GTCCGTATCTTATACCGGCCA 59.111 52.381 0.00 0.00 40.23 5.36
136 137 2.094854 GTCCGTATCTTATACCGGCCAG 60.095 54.545 0.00 0.00 40.23 4.85
137 138 2.165167 CCGTATCTTATACCGGCCAGA 58.835 52.381 0.00 0.00 33.20 3.86
138 139 2.559668 CCGTATCTTATACCGGCCAGAA 59.440 50.000 0.00 0.00 33.20 3.02
139 140 3.006110 CCGTATCTTATACCGGCCAGAAA 59.994 47.826 0.00 0.00 33.20 2.52
140 141 4.501915 CCGTATCTTATACCGGCCAGAAAA 60.502 45.833 0.00 0.00 33.20 2.29
141 142 4.446719 CGTATCTTATACCGGCCAGAAAAC 59.553 45.833 0.00 0.00 0.00 2.43
142 143 2.896168 TCTTATACCGGCCAGAAAACG 58.104 47.619 0.00 0.00 0.00 3.60
143 144 2.496871 TCTTATACCGGCCAGAAAACGA 59.503 45.455 0.00 0.00 0.00 3.85
144 145 2.589798 TATACCGGCCAGAAAACGAG 57.410 50.000 0.00 0.00 0.00 4.18
145 146 0.743345 ATACCGGCCAGAAAACGAGC 60.743 55.000 0.00 0.00 0.00 5.03
146 147 2.102109 TACCGGCCAGAAAACGAGCA 62.102 55.000 0.00 0.00 0.00 4.26
147 148 2.680913 CCGGCCAGAAAACGAGCAG 61.681 63.158 2.24 0.00 0.00 4.24
148 149 1.667830 CGGCCAGAAAACGAGCAGA 60.668 57.895 2.24 0.00 0.00 4.26
149 150 1.227999 CGGCCAGAAAACGAGCAGAA 61.228 55.000 2.24 0.00 0.00 3.02
150 151 0.951558 GGCCAGAAAACGAGCAGAAA 59.048 50.000 0.00 0.00 0.00 2.52
151 152 1.335051 GGCCAGAAAACGAGCAGAAAC 60.335 52.381 0.00 0.00 0.00 2.78
152 153 1.660333 GCCAGAAAACGAGCAGAAACG 60.660 52.381 0.00 0.00 0.00 3.60
153 154 1.660333 CCAGAAAACGAGCAGAAACGC 60.660 52.381 0.00 0.00 0.00 4.84
155 156 2.475111 CAGAAAACGAGCAGAAACGCTA 59.525 45.455 0.00 0.00 44.01 4.26
156 157 3.059868 CAGAAAACGAGCAGAAACGCTAA 60.060 43.478 0.00 0.00 44.01 3.09
157 158 3.746492 AGAAAACGAGCAGAAACGCTAAT 59.254 39.130 0.00 0.00 44.01 1.73
158 159 3.724295 AAACGAGCAGAAACGCTAATC 57.276 42.857 0.00 0.00 44.01 1.75
159 160 1.641577 ACGAGCAGAAACGCTAATCC 58.358 50.000 0.00 0.00 44.01 3.01
160 161 1.067142 ACGAGCAGAAACGCTAATCCA 60.067 47.619 0.00 0.00 44.01 3.41
161 162 1.999735 CGAGCAGAAACGCTAATCCAA 59.000 47.619 0.00 0.00 44.01 3.53
162 163 2.415168 CGAGCAGAAACGCTAATCCAAA 59.585 45.455 0.00 0.00 44.01 3.28
163 164 3.725010 CGAGCAGAAACGCTAATCCAAAC 60.725 47.826 0.00 0.00 44.01 2.93
164 165 3.146066 AGCAGAAACGCTAATCCAAACA 58.854 40.909 0.00 0.00 41.55 2.83
165 166 3.189287 AGCAGAAACGCTAATCCAAACAG 59.811 43.478 0.00 0.00 41.55 3.16
166 167 3.670627 GCAGAAACGCTAATCCAAACAGG 60.671 47.826 0.00 0.00 39.47 4.00
167 168 3.081804 AGAAACGCTAATCCAAACAGGG 58.918 45.455 0.00 0.00 38.24 4.45
168 169 1.173913 AACGCTAATCCAAACAGGGC 58.826 50.000 0.00 0.00 38.24 5.19
169 170 0.679960 ACGCTAATCCAAACAGGGCC 60.680 55.000 0.00 0.00 38.24 5.80
170 171 0.394352 CGCTAATCCAAACAGGGCCT 60.394 55.000 0.00 0.00 38.24 5.19
171 172 1.852633 GCTAATCCAAACAGGGCCTT 58.147 50.000 1.32 0.00 38.24 4.35
172 173 2.682563 CGCTAATCCAAACAGGGCCTTA 60.683 50.000 1.32 0.00 38.24 2.69
173 174 2.688446 GCTAATCCAAACAGGGCCTTAC 59.312 50.000 1.32 0.00 38.24 2.34
174 175 2.231716 AATCCAAACAGGGCCTTACC 57.768 50.000 1.32 0.00 38.24 2.85
175 176 0.034477 ATCCAAACAGGGCCTTACCG 60.034 55.000 1.32 0.00 40.62 4.02
176 177 1.677633 CCAAACAGGGCCTTACCGG 60.678 63.158 1.32 0.00 40.62 5.28
177 178 1.074248 CAAACAGGGCCTTACCGGT 59.926 57.895 13.98 13.98 40.78 5.28
178 179 0.325602 CAAACAGGGCCTTACCGGTA 59.674 55.000 11.16 11.16 37.99 4.02
179 180 0.616891 AAACAGGGCCTTACCGGTAG 59.383 55.000 15.20 5.40 37.99 3.18
180 181 1.907222 AACAGGGCCTTACCGGTAGC 61.907 60.000 15.20 15.46 37.99 3.58
181 182 2.039951 AGGGCCTTACCGGTAGCA 59.960 61.111 22.92 6.97 40.62 3.49
182 183 2.064581 AGGGCCTTACCGGTAGCAG 61.065 63.158 22.92 15.37 40.62 4.24
183 184 2.062177 GGGCCTTACCGGTAGCAGA 61.062 63.158 22.92 5.93 40.62 4.26
184 185 1.143401 GGCCTTACCGGTAGCAGAC 59.857 63.158 22.92 11.87 34.25 3.51
185 186 1.328430 GGCCTTACCGGTAGCAGACT 61.328 60.000 22.92 0.00 34.25 3.24
186 187 0.179108 GCCTTACCGGTAGCAGACTG 60.179 60.000 18.29 0.00 34.25 3.51
229 230 8.761689 TCCTTTATCCGTACTACCTGTATTTTT 58.238 33.333 0.00 0.00 33.23 1.94
288 289 1.452110 TCATGCTGTACCACACATGC 58.548 50.000 12.80 1.41 37.45 4.06
394 396 7.223584 TGTGAACTCAGAATTTTCACCTCATA 58.776 34.615 14.38 0.00 45.68 2.15
522 527 3.554524 CACTGTATTGTCTTTGTTGCGG 58.445 45.455 0.00 0.00 0.00 5.69
609 614 9.158364 CGTAGTTGTATTTGTTTGATCATATGC 57.842 33.333 0.00 0.00 0.00 3.14
830 847 5.462398 GGTTACATATAGTTGAAGACCTGCG 59.538 44.000 0.00 0.00 0.00 5.18
849 866 3.684305 TGCGTTGTTCAATATCAGACTGG 59.316 43.478 1.81 0.00 0.00 4.00
1301 1340 2.225255 GTGAAGAAGGCTTTCAGTGCTC 59.775 50.000 11.53 0.42 35.70 4.26
1350 1389 1.902508 TGGAGCTGTAGGTTCCTCTTG 59.097 52.381 0.00 0.00 44.34 3.02
1368 1407 3.009916 TCTTGACTAGTACTCCCTCCGTT 59.990 47.826 0.00 0.00 0.00 4.44
1374 1413 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1377 1416 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1378 1417 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1379 1418 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1381 1420 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
1382 1421 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
1384 1423 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
1385 1424 5.935789 CCTCCGTTCCAAATTACTTGTCTTA 59.064 40.000 0.00 0.00 32.65 2.10
1386 1425 6.092259 CCTCCGTTCCAAATTACTTGTCTTAG 59.908 42.308 0.00 0.00 32.65 2.18
1387 1426 6.761312 TCCGTTCCAAATTACTTGTCTTAGA 58.239 36.000 0.00 0.00 32.65 2.10
1390 1429 8.512138 CCGTTCCAAATTACTTGTCTTAGATTT 58.488 33.333 0.00 0.00 32.65 2.17
1391 1430 9.329913 CGTTCCAAATTACTTGTCTTAGATTTG 57.670 33.333 0.00 0.00 35.40 2.32
1394 1433 9.793259 TCCAAATTACTTGTCTTAGATTTGTCT 57.207 29.630 0.00 0.00 34.40 3.41
1403 1442 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1404 1443 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1405 1444 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1408 1447 6.352016 AGATTTGTCTAGATACGGATGCAT 57.648 37.500 0.00 0.00 0.00 3.96
1409 1448 6.393990 AGATTTGTCTAGATACGGATGCATC 58.606 40.000 18.81 18.81 0.00 3.91
1410 1449 5.791336 TTTGTCTAGATACGGATGCATCT 57.209 39.130 25.28 10.06 35.67 2.90
1412 1451 6.502136 TTGTCTAGATACGGATGCATCTAG 57.498 41.667 25.28 20.66 46.48 2.43
1413 1452 5.561679 TGTCTAGATACGGATGCATCTAGT 58.438 41.667 25.28 24.53 45.78 2.57
1414 1453 6.708285 TGTCTAGATACGGATGCATCTAGTA 58.292 40.000 25.28 25.63 45.78 1.82
1415 1454 6.594547 TGTCTAGATACGGATGCATCTAGTAC 59.405 42.308 26.05 20.95 45.78 2.73
1416 1455 6.819649 GTCTAGATACGGATGCATCTAGTACT 59.180 42.308 26.05 24.31 45.78 2.73
1417 1456 7.980662 GTCTAGATACGGATGCATCTAGTACTA 59.019 40.741 26.05 24.20 45.78 1.82
1418 1457 8.537858 TCTAGATACGGATGCATCTAGTACTAA 58.462 37.037 26.05 17.27 45.78 2.24
1420 1459 8.405418 AGATACGGATGCATCTAGTACTAAAA 57.595 34.615 26.05 13.44 29.66 1.52
1421 1460 9.026121 AGATACGGATGCATCTAGTACTAAAAT 57.974 33.333 26.05 16.35 29.66 1.82
1422 1461 8.988064 ATACGGATGCATCTAGTACTAAAATG 57.012 34.615 26.05 15.76 0.00 2.32
1423 1462 7.050970 ACGGATGCATCTAGTACTAAAATGA 57.949 36.000 25.28 9.63 0.00 2.57
1424 1463 7.148641 ACGGATGCATCTAGTACTAAAATGAG 58.851 38.462 25.28 5.66 0.00 2.90
1426 1465 7.327275 CGGATGCATCTAGTACTAAAATGAGTC 59.673 40.741 25.28 17.19 0.00 3.36
1427 1466 8.364142 GGATGCATCTAGTACTAAAATGAGTCT 58.636 37.037 25.28 8.04 0.00 3.24
1430 1469 9.628500 TGCATCTAGTACTAAAATGAGTCTAGA 57.372 33.333 21.06 7.35 38.76 2.43
1438 1477 9.828852 GTACTAAAATGAGTCTAGATACATCCG 57.171 37.037 12.66 6.68 0.00 4.18
1439 1478 8.466617 ACTAAAATGAGTCTAGATACATCCGT 57.533 34.615 12.66 7.10 0.00 4.69
1440 1479 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
1454 1493 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
1455 1494 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
1456 1495 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
1457 1496 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
1458 1497 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
1459 1498 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
1460 1499 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
1461 1500 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
1462 1501 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
1463 1502 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
1464 1503 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1466 1505 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
1467 1506 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1468 1507 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
1469 1508 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
1470 1509 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
1471 1510 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
1472 1511 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
1543 1582 7.562135 TGATGGGTTCTTACCACTTTATACTC 58.438 38.462 0.00 0.00 46.96 2.59
1608 1647 6.451064 TTGCTGTATACGATTCTCTGAAGA 57.549 37.500 0.00 0.00 0.00 2.87
1661 1700 4.530094 TGCAAAGTACAACGAGTTTCAG 57.470 40.909 0.00 0.00 0.00 3.02
1664 1703 5.295787 TGCAAAGTACAACGAGTTTCAGATT 59.704 36.000 0.00 0.00 0.00 2.40
1681 1720 5.324409 TCAGATTGTAACAAGGCTTGGATT 58.676 37.500 29.26 18.23 34.12 3.01
1682 1721 5.774690 TCAGATTGTAACAAGGCTTGGATTT 59.225 36.000 29.26 17.56 34.12 2.17
1716 1757 0.541863 AACCATAGGGAAGACTGGCG 59.458 55.000 0.00 0.00 38.05 5.69
1791 1947 0.937304 TCACGCTGCTTCTGTTGTTC 59.063 50.000 0.00 0.00 0.00 3.18
1799 1955 1.876156 GCTTCTGTTGTTCACTGGAGG 59.124 52.381 0.00 0.00 31.72 4.30
1833 1989 3.726557 TTCAGGAAGAATGCAGATGGT 57.273 42.857 0.00 0.00 0.00 3.55
1834 1990 3.272574 TCAGGAAGAATGCAGATGGTC 57.727 47.619 0.00 0.00 0.00 4.02
1835 1991 1.938577 CAGGAAGAATGCAGATGGTCG 59.061 52.381 0.00 0.00 0.00 4.79
1836 1992 1.134280 AGGAAGAATGCAGATGGTCGG 60.134 52.381 0.00 0.00 0.00 4.79
1837 1993 0.659957 GAAGAATGCAGATGGTCGGC 59.340 55.000 0.00 0.00 38.08 5.54
1838 1994 0.254178 AAGAATGCAGATGGTCGGCT 59.746 50.000 0.00 0.00 38.41 5.52
1839 1995 0.463295 AGAATGCAGATGGTCGGCTG 60.463 55.000 0.00 0.00 38.41 4.85
1840 1996 1.442526 GAATGCAGATGGTCGGCTGG 61.443 60.000 0.00 0.00 38.41 4.85
1841 1997 1.913951 AATGCAGATGGTCGGCTGGA 61.914 55.000 0.00 0.00 38.41 3.86
1842 1998 1.913951 ATGCAGATGGTCGGCTGGAA 61.914 55.000 0.00 0.00 38.41 3.53
1843 1999 1.153086 GCAGATGGTCGGCTGGAAT 60.153 57.895 0.00 0.00 34.72 3.01
1844 2000 1.162800 GCAGATGGTCGGCTGGAATC 61.163 60.000 0.00 0.00 34.72 2.52
1845 2001 0.178767 CAGATGGTCGGCTGGAATCA 59.821 55.000 0.00 0.00 0.00 2.57
1846 2002 0.179000 AGATGGTCGGCTGGAATCAC 59.821 55.000 0.00 0.00 0.00 3.06
1847 2003 1.153369 ATGGTCGGCTGGAATCACG 60.153 57.895 0.00 0.00 0.00 4.35
1848 2004 3.195698 GGTCGGCTGGAATCACGC 61.196 66.667 0.00 0.00 0.00 5.34
1849 2005 2.125512 GTCGGCTGGAATCACGCT 60.126 61.111 0.00 0.00 0.00 5.07
1850 2006 2.125552 TCGGCTGGAATCACGCTG 60.126 61.111 0.00 0.00 0.00 5.18
1851 2007 3.869272 CGGCTGGAATCACGCTGC 61.869 66.667 0.00 0.00 0.00 5.25
1852 2008 2.437359 GGCTGGAATCACGCTGCT 60.437 61.111 0.00 0.00 0.00 4.24
1853 2009 2.042831 GGCTGGAATCACGCTGCTT 61.043 57.895 0.00 0.00 0.00 3.91
1854 2010 1.427020 GCTGGAATCACGCTGCTTC 59.573 57.895 0.00 0.00 0.00 3.86
1855 2011 1.023513 GCTGGAATCACGCTGCTTCT 61.024 55.000 0.00 0.00 0.00 2.85
1856 2012 0.725686 CTGGAATCACGCTGCTTCTG 59.274 55.000 0.00 0.00 0.00 3.02
1857 2013 0.035317 TGGAATCACGCTGCTTCTGT 59.965 50.000 0.00 0.00 0.00 3.41
1858 2014 1.160137 GGAATCACGCTGCTTCTGTT 58.840 50.000 0.00 0.00 0.00 3.16
1859 2015 1.135859 GGAATCACGCTGCTTCTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
1860 2016 1.532868 GAATCACGCTGCTTCTGTTGT 59.467 47.619 0.00 0.00 0.00 3.32
1861 2017 1.597742 ATCACGCTGCTTCTGTTGTT 58.402 45.000 0.00 0.00 0.00 2.83
1862 2018 2.232756 TCACGCTGCTTCTGTTGTTA 57.767 45.000 0.00 0.00 0.00 2.41
1863 2019 2.556257 TCACGCTGCTTCTGTTGTTAA 58.444 42.857 0.00 0.00 0.00 2.01
1864 2020 3.138304 TCACGCTGCTTCTGTTGTTAAT 58.862 40.909 0.00 0.00 0.00 1.40
1865 2021 3.058983 TCACGCTGCTTCTGTTGTTAATG 60.059 43.478 0.00 0.00 0.00 1.90
1866 2022 2.226437 ACGCTGCTTCTGTTGTTAATGG 59.774 45.455 0.00 0.00 0.00 3.16
1867 2023 2.483877 CGCTGCTTCTGTTGTTAATGGA 59.516 45.455 0.00 0.00 0.00 3.41
1868 2024 3.425359 CGCTGCTTCTGTTGTTAATGGAG 60.425 47.826 0.00 0.00 0.00 3.86
1869 2025 3.753272 GCTGCTTCTGTTGTTAATGGAGA 59.247 43.478 0.00 0.00 0.00 3.71
1870 2026 4.216257 GCTGCTTCTGTTGTTAATGGAGAA 59.784 41.667 0.00 0.00 0.00 2.87
1871 2027 5.689383 TGCTTCTGTTGTTAATGGAGAAC 57.311 39.130 0.00 0.00 0.00 3.01
1872 2028 4.213270 TGCTTCTGTTGTTAATGGAGAACG 59.787 41.667 0.00 0.00 0.00 3.95
1873 2029 4.712763 CTTCTGTTGTTAATGGAGAACGC 58.287 43.478 0.00 0.00 0.00 4.84
1874 2030 3.734463 TCTGTTGTTAATGGAGAACGCA 58.266 40.909 0.00 0.00 0.00 5.24
1875 2031 4.130857 TCTGTTGTTAATGGAGAACGCAA 58.869 39.130 0.00 0.00 0.00 4.85
1876 2032 4.576873 TCTGTTGTTAATGGAGAACGCAAA 59.423 37.500 0.00 0.00 0.00 3.68
1877 2033 4.854399 TGTTGTTAATGGAGAACGCAAAG 58.146 39.130 0.00 0.00 0.00 2.77
1878 2034 4.576873 TGTTGTTAATGGAGAACGCAAAGA 59.423 37.500 0.00 0.00 0.00 2.52
1879 2035 5.147162 GTTGTTAATGGAGAACGCAAAGAG 58.853 41.667 0.00 0.00 0.00 2.85
1880 2036 3.751175 TGTTAATGGAGAACGCAAAGAGG 59.249 43.478 0.00 0.00 0.00 3.69
1881 2037 1.168714 AATGGAGAACGCAAAGAGGC 58.831 50.000 0.00 0.00 0.00 4.70
1882 2038 0.036732 ATGGAGAACGCAAAGAGGCA 59.963 50.000 0.00 0.00 0.00 4.75
1883 2039 0.036732 TGGAGAACGCAAAGAGGCAT 59.963 50.000 0.00 0.00 0.00 4.40
1884 2040 1.168714 GGAGAACGCAAAGAGGCATT 58.831 50.000 0.00 0.00 0.00 3.56
1885 2041 1.131315 GGAGAACGCAAAGAGGCATTC 59.869 52.381 0.00 0.00 36.31 2.67
1886 2042 1.806542 GAGAACGCAAAGAGGCATTCA 59.193 47.619 0.00 0.00 38.36 2.57
1887 2043 1.808945 AGAACGCAAAGAGGCATTCAG 59.191 47.619 0.00 0.00 38.36 3.02
1888 2044 0.883833 AACGCAAAGAGGCATTCAGG 59.116 50.000 0.00 0.00 0.00 3.86
1889 2045 0.036732 ACGCAAAGAGGCATTCAGGA 59.963 50.000 0.00 0.00 0.00 3.86
1890 2046 1.167851 CGCAAAGAGGCATTCAGGAA 58.832 50.000 0.00 0.00 0.00 3.36
1891 2047 1.131883 CGCAAAGAGGCATTCAGGAAG 59.868 52.381 0.00 0.00 0.00 3.46
1892 2048 2.440409 GCAAAGAGGCATTCAGGAAGA 58.560 47.619 0.00 0.00 0.00 2.87
1893 2049 2.821969 GCAAAGAGGCATTCAGGAAGAA 59.178 45.455 0.00 0.00 41.28 2.52
2204 2375 5.528320 ACGAGGATGTTCTAGTAGTAGAAGC 59.472 44.000 18.46 13.84 44.38 3.86
2205 2376 5.333492 CGAGGATGTTCTAGTAGTAGAAGCG 60.333 48.000 18.46 11.95 44.38 4.68
2206 2377 5.682659 AGGATGTTCTAGTAGTAGAAGCGA 58.317 41.667 18.46 7.86 44.38 4.93
2207 2378 5.761234 AGGATGTTCTAGTAGTAGAAGCGAG 59.239 44.000 18.46 0.00 44.38 5.03
2208 2379 5.049267 GGATGTTCTAGTAGTAGAAGCGAGG 60.049 48.000 18.46 0.00 44.38 4.63
2209 2380 3.626670 TGTTCTAGTAGTAGAAGCGAGGC 59.373 47.826 18.46 8.00 44.38 4.70
2210 2381 2.848691 TCTAGTAGTAGAAGCGAGGCC 58.151 52.381 4.74 0.00 31.94 5.19
2240 2424 4.532521 AGACTAGCCCTGTCTGTGTTTATT 59.467 41.667 3.51 0.00 42.46 1.40
2249 2433 7.572539 GCCCTGTCTGTGTTTATTAACTTGTAC 60.573 40.741 0.00 0.00 35.24 2.90
2250 2434 7.660208 CCCTGTCTGTGTTTATTAACTTGTACT 59.340 37.037 0.00 0.00 35.24 2.73
2251 2435 8.495949 CCTGTCTGTGTTTATTAACTTGTACTG 58.504 37.037 0.00 0.00 35.24 2.74
2252 2436 8.951787 TGTCTGTGTTTATTAACTTGTACTGT 57.048 30.769 0.00 0.00 35.24 3.55
2315 2505 3.000727 CGAGTACAAGGACAATTGGACC 58.999 50.000 10.83 12.51 43.85 4.46
2347 2540 0.536006 ATTCAGCATAAGGCCCTCGC 60.536 55.000 0.00 0.00 46.50 5.03
2348 2541 1.909459 TTCAGCATAAGGCCCTCGCA 61.909 55.000 0.00 0.00 46.50 5.10
2349 2542 1.890979 CAGCATAAGGCCCTCGCAG 60.891 63.158 0.00 0.00 46.50 5.18
2350 2543 2.190578 GCATAAGGCCCTCGCAGT 59.809 61.111 0.00 0.00 36.38 4.40
2351 2544 1.889573 GCATAAGGCCCTCGCAGTC 60.890 63.158 0.00 0.00 36.38 3.51
2352 2545 1.592669 CATAAGGCCCTCGCAGTCG 60.593 63.158 0.00 0.00 36.38 4.18
2410 2660 1.595093 GCCCTAATTGTTGCCGCACT 61.595 55.000 0.00 0.00 0.00 4.40
2428 2678 3.679389 CACTGCACTCTTGGGAAAGTAT 58.321 45.455 0.00 0.00 0.00 2.12
2436 2686 6.349363 GCACTCTTGGGAAAGTATTAAGTTGG 60.349 42.308 0.00 0.00 0.00 3.77
2437 2687 5.710567 ACTCTTGGGAAAGTATTAAGTTGGC 59.289 40.000 0.00 0.00 0.00 4.52
2438 2688 5.887754 TCTTGGGAAAGTATTAAGTTGGCT 58.112 37.500 0.00 0.00 0.00 4.75
2439 2689 5.710099 TCTTGGGAAAGTATTAAGTTGGCTG 59.290 40.000 0.00 0.00 0.00 4.85
2440 2690 5.249780 TGGGAAAGTATTAAGTTGGCTGA 57.750 39.130 0.00 0.00 0.00 4.26
2441 2691 5.636123 TGGGAAAGTATTAAGTTGGCTGAA 58.364 37.500 0.00 0.00 0.00 3.02
2442 2692 5.475564 TGGGAAAGTATTAAGTTGGCTGAAC 59.524 40.000 0.00 0.00 34.40 3.18
2443 2693 5.475564 GGGAAAGTATTAAGTTGGCTGAACA 59.524 40.000 2.64 0.00 36.98 3.18
2444 2694 6.152831 GGGAAAGTATTAAGTTGGCTGAACAT 59.847 38.462 2.64 0.00 36.98 2.71
2445 2695 7.029563 GGAAAGTATTAAGTTGGCTGAACATG 58.970 38.462 0.00 0.00 36.98 3.21
2446 2696 5.567138 AGTATTAAGTTGGCTGAACATGC 57.433 39.130 0.00 0.00 36.98 4.06
2447 2697 5.009631 AGTATTAAGTTGGCTGAACATGCA 58.990 37.500 0.00 0.00 36.98 3.96
2528 2778 2.027561 GCCACTGGGTGTTGTATCACTA 60.028 50.000 0.00 0.00 38.28 2.74
2529 2779 3.861840 CCACTGGGTGTTGTATCACTAG 58.138 50.000 0.00 0.00 38.28 2.57
2530 2780 3.260884 CCACTGGGTGTTGTATCACTAGT 59.739 47.826 0.00 0.00 38.28 2.57
2588 2838 2.190161 GACGAACAACTGTTTTTGCCC 58.810 47.619 0.00 0.00 38.56 5.36
2635 2885 9.435688 GAATTTATGTAAATTTTGCTTCTGGGT 57.564 29.630 10.97 0.00 43.67 4.51
2643 2893 9.869757 GTAAATTTTGCTTCTGGGTTTACATAT 57.130 29.630 0.00 0.00 33.24 1.78
2671 2921 0.464036 TGGGTCGATTGATTCTCCCG 59.536 55.000 0.00 0.00 38.32 5.14
2731 2981 7.566858 ACTAATTTTGATTTGCACGTTCATC 57.433 32.000 0.00 0.00 0.00 2.92
2748 2998 6.919662 ACGTTCATCATGATTTTATTCCATGC 59.080 34.615 5.16 0.00 37.99 4.06
2771 3021 0.860457 TGCTATAGCCAGAGGGGAGA 59.140 55.000 21.84 0.00 40.01 3.71
2977 3229 7.606456 ACTCGTGTAGAACATTTATTGGTCAAT 59.394 33.333 1.65 1.65 45.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.202830 TCCAAGCGGTGCCTAAAGAAA 60.203 47.619 0.00 0.00 0.00 2.52
1 2 0.398696 TCCAAGCGGTGCCTAAAGAA 59.601 50.000 0.00 0.00 0.00 2.52
2 3 0.398696 TTCCAAGCGGTGCCTAAAGA 59.601 50.000 0.00 0.00 0.00 2.52
3 4 1.133025 CATTCCAAGCGGTGCCTAAAG 59.867 52.381 0.00 0.00 0.00 1.85
4 5 1.173043 CATTCCAAGCGGTGCCTAAA 58.827 50.000 0.00 0.00 0.00 1.85
5 6 0.679640 CCATTCCAAGCGGTGCCTAA 60.680 55.000 0.00 0.00 0.00 2.69
6 7 1.077787 CCATTCCAAGCGGTGCCTA 60.078 57.895 0.00 0.00 0.00 3.93
7 8 2.361610 CCATTCCAAGCGGTGCCT 60.362 61.111 0.00 0.00 0.00 4.75
8 9 3.451894 CCCATTCCAAGCGGTGCC 61.452 66.667 0.00 0.00 0.00 5.01
9 10 3.451894 CCCCATTCCAAGCGGTGC 61.452 66.667 0.00 0.00 0.00 5.01
10 11 2.204865 TACCCCCATTCCAAGCGGTG 62.205 60.000 0.00 0.00 0.00 4.94
11 12 1.502527 TTACCCCCATTCCAAGCGGT 61.503 55.000 0.00 0.00 0.00 5.68
12 13 0.106217 ATTACCCCCATTCCAAGCGG 60.106 55.000 0.00 0.00 0.00 5.52
13 14 1.775385 AATTACCCCCATTCCAAGCG 58.225 50.000 0.00 0.00 0.00 4.68
14 15 5.887214 ATAAAATTACCCCCATTCCAAGC 57.113 39.130 0.00 0.00 0.00 4.01
15 16 6.516028 GCGTATAAAATTACCCCCATTCCAAG 60.516 42.308 0.00 0.00 0.00 3.61
16 17 5.302313 GCGTATAAAATTACCCCCATTCCAA 59.698 40.000 0.00 0.00 0.00 3.53
17 18 4.828387 GCGTATAAAATTACCCCCATTCCA 59.172 41.667 0.00 0.00 0.00 3.53
18 19 4.083164 CGCGTATAAAATTACCCCCATTCC 60.083 45.833 0.00 0.00 0.00 3.01
19 20 4.516321 ACGCGTATAAAATTACCCCCATTC 59.484 41.667 11.67 0.00 0.00 2.67
20 21 4.276431 CACGCGTATAAAATTACCCCCATT 59.724 41.667 13.44 0.00 0.00 3.16
21 22 3.816523 CACGCGTATAAAATTACCCCCAT 59.183 43.478 13.44 0.00 0.00 4.00
22 23 3.204526 CACGCGTATAAAATTACCCCCA 58.795 45.455 13.44 0.00 0.00 4.96
23 24 3.205338 ACACGCGTATAAAATTACCCCC 58.795 45.455 13.44 0.00 0.00 5.40
24 25 6.544038 AATACACGCGTATAAAATTACCCC 57.456 37.500 13.44 0.00 37.34 4.95
32 33 9.184062 CCTGTAGAATAAATACACGCGTATAAA 57.816 33.333 13.44 0.00 37.34 1.40
33 34 8.352201 ACCTGTAGAATAAATACACGCGTATAA 58.648 33.333 13.44 0.00 37.34 0.98
34 35 7.804600 CACCTGTAGAATAAATACACGCGTATA 59.195 37.037 13.44 5.15 37.34 1.47
35 36 6.639686 CACCTGTAGAATAAATACACGCGTAT 59.360 38.462 13.44 1.77 40.15 3.06
36 37 5.972973 CACCTGTAGAATAAATACACGCGTA 59.027 40.000 13.44 0.00 0.00 4.42
37 38 4.802039 CACCTGTAGAATAAATACACGCGT 59.198 41.667 5.58 5.58 0.00 6.01
38 39 4.802039 ACACCTGTAGAATAAATACACGCG 59.198 41.667 3.53 3.53 0.00 6.01
39 40 7.490402 ACTTACACCTGTAGAATAAATACACGC 59.510 37.037 0.00 0.00 0.00 5.34
40 41 8.922058 ACTTACACCTGTAGAATAAATACACG 57.078 34.615 0.00 0.00 0.00 4.49
45 46 9.886132 CCTGTAACTTACACCTGTAGAATAAAT 57.114 33.333 0.00 0.00 34.46 1.40
46 47 8.873144 ACCTGTAACTTACACCTGTAGAATAAA 58.127 33.333 0.00 0.00 34.46 1.40
47 48 8.426569 ACCTGTAACTTACACCTGTAGAATAA 57.573 34.615 0.00 0.00 34.46 1.40
48 49 7.670979 TGACCTGTAACTTACACCTGTAGAATA 59.329 37.037 0.00 0.00 34.46 1.75
49 50 6.495872 TGACCTGTAACTTACACCTGTAGAAT 59.504 38.462 0.00 0.00 34.46 2.40
50 51 5.834742 TGACCTGTAACTTACACCTGTAGAA 59.165 40.000 0.00 0.00 34.46 2.10
51 52 5.387788 TGACCTGTAACTTACACCTGTAGA 58.612 41.667 0.00 0.00 34.46 2.59
52 53 5.717078 TGACCTGTAACTTACACCTGTAG 57.283 43.478 0.00 0.00 34.46 2.74
53 54 5.363292 TGTTGACCTGTAACTTACACCTGTA 59.637 40.000 0.00 0.00 34.46 2.74
54 55 4.162698 TGTTGACCTGTAACTTACACCTGT 59.837 41.667 0.00 0.00 34.46 4.00
55 56 4.699637 TGTTGACCTGTAACTTACACCTG 58.300 43.478 0.00 0.00 34.46 4.00
56 57 4.407945 ACTGTTGACCTGTAACTTACACCT 59.592 41.667 0.00 0.00 34.46 4.00
57 58 4.700700 ACTGTTGACCTGTAACTTACACC 58.299 43.478 0.00 0.00 34.46 4.16
58 59 7.707893 TCTTAACTGTTGACCTGTAACTTACAC 59.292 37.037 2.69 0.00 34.46 2.90
59 60 7.784037 TCTTAACTGTTGACCTGTAACTTACA 58.216 34.615 2.69 1.67 37.13 2.41
60 61 8.828688 ATCTTAACTGTTGACCTGTAACTTAC 57.171 34.615 2.69 0.00 0.00 2.34
61 62 8.644216 TGATCTTAACTGTTGACCTGTAACTTA 58.356 33.333 2.69 0.00 0.00 2.24
62 63 7.506114 TGATCTTAACTGTTGACCTGTAACTT 58.494 34.615 2.69 0.00 0.00 2.66
63 64 7.062749 TGATCTTAACTGTTGACCTGTAACT 57.937 36.000 2.69 0.00 0.00 2.24
64 65 6.128526 GCTGATCTTAACTGTTGACCTGTAAC 60.129 42.308 2.69 0.00 0.00 2.50
65 66 5.932303 GCTGATCTTAACTGTTGACCTGTAA 59.068 40.000 2.69 0.00 0.00 2.41
66 67 5.479306 GCTGATCTTAACTGTTGACCTGTA 58.521 41.667 2.69 0.00 0.00 2.74
67 68 4.319177 GCTGATCTTAACTGTTGACCTGT 58.681 43.478 2.69 0.00 0.00 4.00
68 69 3.686726 GGCTGATCTTAACTGTTGACCTG 59.313 47.826 2.69 0.00 0.00 4.00
69 70 3.584848 AGGCTGATCTTAACTGTTGACCT 59.415 43.478 2.69 0.00 0.00 3.85
70 71 3.686726 CAGGCTGATCTTAACTGTTGACC 59.313 47.826 9.42 0.00 0.00 4.02
71 72 4.569943 TCAGGCTGATCTTAACTGTTGAC 58.430 43.478 14.43 0.00 0.00 3.18
72 73 4.890158 TCAGGCTGATCTTAACTGTTGA 57.110 40.909 14.43 0.00 0.00 3.18
73 74 5.947228 TTTCAGGCTGATCTTAACTGTTG 57.053 39.130 19.50 0.00 0.00 3.33
74 75 6.240894 TCATTTCAGGCTGATCTTAACTGTT 58.759 36.000 19.50 0.00 0.00 3.16
75 76 5.809001 TCATTTCAGGCTGATCTTAACTGT 58.191 37.500 19.50 0.00 0.00 3.55
76 77 6.748333 TTCATTTCAGGCTGATCTTAACTG 57.252 37.500 19.50 7.54 0.00 3.16
77 78 7.573843 CGTTTTCATTTCAGGCTGATCTTAACT 60.574 37.037 19.50 0.00 0.00 2.24
78 79 6.524586 CGTTTTCATTTCAGGCTGATCTTAAC 59.475 38.462 19.50 15.42 0.00 2.01
79 80 6.429692 TCGTTTTCATTTCAGGCTGATCTTAA 59.570 34.615 19.50 10.00 0.00 1.85
80 81 5.937540 TCGTTTTCATTTCAGGCTGATCTTA 59.062 36.000 19.50 0.00 0.00 2.10
81 82 4.761739 TCGTTTTCATTTCAGGCTGATCTT 59.238 37.500 19.50 3.20 0.00 2.40
82 83 4.326826 TCGTTTTCATTTCAGGCTGATCT 58.673 39.130 19.50 5.74 0.00 2.75
83 84 4.685169 TCGTTTTCATTTCAGGCTGATC 57.315 40.909 19.50 1.50 0.00 2.92
84 85 4.321230 GGTTCGTTTTCATTTCAGGCTGAT 60.321 41.667 19.50 0.44 0.00 2.90
85 86 3.004315 GGTTCGTTTTCATTTCAGGCTGA 59.996 43.478 14.43 14.43 0.00 4.26
86 87 3.308530 GGTTCGTTTTCATTTCAGGCTG 58.691 45.455 8.58 8.58 0.00 4.85
87 88 2.031157 CGGTTCGTTTTCATTTCAGGCT 60.031 45.455 0.00 0.00 0.00 4.58
88 89 2.315901 CGGTTCGTTTTCATTTCAGGC 58.684 47.619 0.00 0.00 0.00 4.85
89 90 2.550606 TCCGGTTCGTTTTCATTTCAGG 59.449 45.455 0.00 0.00 0.00 3.86
90 91 3.364964 CCTCCGGTTCGTTTTCATTTCAG 60.365 47.826 0.00 0.00 0.00 3.02
91 92 2.550606 CCTCCGGTTCGTTTTCATTTCA 59.449 45.455 0.00 0.00 0.00 2.69
92 93 2.809696 TCCTCCGGTTCGTTTTCATTTC 59.190 45.455 0.00 0.00 0.00 2.17
93 94 2.812011 CTCCTCCGGTTCGTTTTCATTT 59.188 45.455 0.00 0.00 0.00 2.32
94 95 2.423577 CTCCTCCGGTTCGTTTTCATT 58.576 47.619 0.00 0.00 0.00 2.57
95 96 1.338769 CCTCCTCCGGTTCGTTTTCAT 60.339 52.381 0.00 0.00 0.00 2.57
96 97 0.034337 CCTCCTCCGGTTCGTTTTCA 59.966 55.000 0.00 0.00 0.00 2.69
97 98 0.034476 ACCTCCTCCGGTTCGTTTTC 59.966 55.000 0.00 0.00 31.94 2.29
98 99 0.034476 GACCTCCTCCGGTTCGTTTT 59.966 55.000 0.00 0.00 37.42 2.43
99 100 1.670015 GACCTCCTCCGGTTCGTTT 59.330 57.895 0.00 0.00 37.42 3.60
100 101 2.281295 GGACCTCCTCCGGTTCGTT 61.281 63.158 0.00 0.00 37.42 3.85
101 102 2.679287 GGACCTCCTCCGGTTCGT 60.679 66.667 0.00 0.00 37.42 3.85
108 109 4.015764 GGTATAAGATACGGACCTCCTCC 58.984 52.174 0.00 0.00 35.33 4.30
109 110 3.688673 CGGTATAAGATACGGACCTCCTC 59.311 52.174 0.00 0.00 0.00 3.71
110 111 3.683802 CGGTATAAGATACGGACCTCCT 58.316 50.000 0.00 0.00 0.00 3.69
118 119 3.928727 TTCTGGCCGGTATAAGATACG 57.071 47.619 12.43 0.00 0.00 3.06
119 120 4.446719 CGTTTTCTGGCCGGTATAAGATAC 59.553 45.833 12.43 1.91 0.00 2.24
120 121 4.341806 TCGTTTTCTGGCCGGTATAAGATA 59.658 41.667 12.43 0.00 0.00 1.98
121 122 3.133362 TCGTTTTCTGGCCGGTATAAGAT 59.867 43.478 12.43 0.00 0.00 2.40
122 123 2.496871 TCGTTTTCTGGCCGGTATAAGA 59.503 45.455 12.43 2.18 0.00 2.10
123 124 2.864343 CTCGTTTTCTGGCCGGTATAAG 59.136 50.000 12.43 0.00 0.00 1.73
124 125 2.896168 CTCGTTTTCTGGCCGGTATAA 58.104 47.619 12.43 1.89 0.00 0.98
125 126 1.472026 GCTCGTTTTCTGGCCGGTATA 60.472 52.381 12.43 0.00 0.00 1.47
126 127 0.743345 GCTCGTTTTCTGGCCGGTAT 60.743 55.000 12.43 0.00 0.00 2.73
127 128 1.375013 GCTCGTTTTCTGGCCGGTA 60.375 57.895 12.43 0.00 0.00 4.02
128 129 2.668550 GCTCGTTTTCTGGCCGGT 60.669 61.111 12.43 0.00 0.00 5.28
129 130 2.668212 TGCTCGTTTTCTGGCCGG 60.668 61.111 4.71 4.71 0.00 6.13
130 131 1.227999 TTCTGCTCGTTTTCTGGCCG 61.228 55.000 0.00 0.00 0.00 6.13
131 132 0.951558 TTTCTGCTCGTTTTCTGGCC 59.048 50.000 0.00 0.00 0.00 5.36
132 133 1.660333 CGTTTCTGCTCGTTTTCTGGC 60.660 52.381 0.00 0.00 0.00 4.85
133 134 1.660333 GCGTTTCTGCTCGTTTTCTGG 60.660 52.381 0.00 0.00 0.00 3.86
134 135 1.261619 AGCGTTTCTGCTCGTTTTCTG 59.738 47.619 0.00 0.00 42.95 3.02
135 136 1.583054 AGCGTTTCTGCTCGTTTTCT 58.417 45.000 0.00 0.00 42.95 2.52
136 137 3.515071 TTAGCGTTTCTGCTCGTTTTC 57.485 42.857 0.00 0.00 45.87 2.29
137 138 3.120304 GGATTAGCGTTTCTGCTCGTTTT 60.120 43.478 0.00 0.00 45.87 2.43
138 139 2.415512 GGATTAGCGTTTCTGCTCGTTT 59.584 45.455 0.00 0.00 45.87 3.60
139 140 2.000447 GGATTAGCGTTTCTGCTCGTT 59.000 47.619 0.00 0.00 45.87 3.85
140 141 1.067142 TGGATTAGCGTTTCTGCTCGT 60.067 47.619 0.00 0.00 45.87 4.18
141 142 1.640428 TGGATTAGCGTTTCTGCTCG 58.360 50.000 0.00 0.00 45.87 5.03
142 143 3.188460 TGTTTGGATTAGCGTTTCTGCTC 59.812 43.478 0.00 0.00 45.87 4.26
143 144 5.868763 CCTGTTTGGATTAGCGTTTCTGCT 61.869 45.833 0.00 0.00 43.17 4.24
144 145 3.492313 CTGTTTGGATTAGCGTTTCTGC 58.508 45.455 0.00 0.00 0.00 4.26
145 146 3.119849 CCCTGTTTGGATTAGCGTTTCTG 60.120 47.826 0.00 0.00 38.35 3.02
146 147 3.081804 CCCTGTTTGGATTAGCGTTTCT 58.918 45.455 0.00 0.00 38.35 2.52
147 148 2.415491 GCCCTGTTTGGATTAGCGTTTC 60.415 50.000 0.00 0.00 38.35 2.78
148 149 1.544246 GCCCTGTTTGGATTAGCGTTT 59.456 47.619 0.00 0.00 38.35 3.60
149 150 1.173913 GCCCTGTTTGGATTAGCGTT 58.826 50.000 0.00 0.00 38.35 4.84
150 151 0.679960 GGCCCTGTTTGGATTAGCGT 60.680 55.000 0.00 0.00 38.35 5.07
151 152 0.394352 AGGCCCTGTTTGGATTAGCG 60.394 55.000 0.00 0.00 38.35 4.26
152 153 1.852633 AAGGCCCTGTTTGGATTAGC 58.147 50.000 0.00 0.00 38.35 3.09
153 154 3.288092 GGTAAGGCCCTGTTTGGATTAG 58.712 50.000 0.00 0.00 38.35 1.73
154 155 2.356330 CGGTAAGGCCCTGTTTGGATTA 60.356 50.000 0.00 0.00 38.35 1.75
155 156 1.615919 CGGTAAGGCCCTGTTTGGATT 60.616 52.381 0.00 0.00 38.35 3.01
156 157 0.034477 CGGTAAGGCCCTGTTTGGAT 60.034 55.000 0.00 0.00 38.35 3.41
157 158 1.377229 CGGTAAGGCCCTGTTTGGA 59.623 57.895 0.00 0.00 38.35 3.53
158 159 1.677633 CCGGTAAGGCCCTGTTTGG 60.678 63.158 0.00 0.00 0.00 3.28
159 160 0.325602 TACCGGTAAGGCCCTGTTTG 59.674 55.000 13.14 0.00 46.52 2.93
160 161 0.616891 CTACCGGTAAGGCCCTGTTT 59.383 55.000 16.65 0.00 46.52 2.83
161 162 1.907222 GCTACCGGTAAGGCCCTGTT 61.907 60.000 16.65 0.00 46.52 3.16
162 163 2.364780 GCTACCGGTAAGGCCCTGT 61.365 63.158 16.65 0.00 46.52 4.00
163 164 2.311688 CTGCTACCGGTAAGGCCCTG 62.312 65.000 19.82 6.86 46.52 4.45
164 165 2.039951 TGCTACCGGTAAGGCCCT 59.960 61.111 19.82 0.00 46.52 5.19
165 166 2.062177 TCTGCTACCGGTAAGGCCC 61.062 63.158 19.82 6.25 46.52 5.80
166 167 1.143401 GTCTGCTACCGGTAAGGCC 59.857 63.158 19.82 0.00 46.52 5.19
167 168 0.179108 CAGTCTGCTACCGGTAAGGC 60.179 60.000 16.65 16.73 46.52 4.35
169 170 0.460311 CCCAGTCTGCTACCGGTAAG 59.540 60.000 16.65 11.35 0.00 2.34
170 171 0.974010 CCCCAGTCTGCTACCGGTAA 60.974 60.000 16.65 0.09 0.00 2.85
171 172 1.380785 CCCCAGTCTGCTACCGGTA 60.381 63.158 14.95 14.95 0.00 4.02
172 173 2.531483 ATCCCCAGTCTGCTACCGGT 62.531 60.000 13.98 13.98 0.00 5.28
173 174 1.338136 AATCCCCAGTCTGCTACCGG 61.338 60.000 0.00 0.00 0.00 5.28
174 175 0.179073 CAATCCCCAGTCTGCTACCG 60.179 60.000 0.00 0.00 0.00 4.02
175 176 0.912486 ACAATCCCCAGTCTGCTACC 59.088 55.000 0.00 0.00 0.00 3.18
176 177 3.134804 ACATACAATCCCCAGTCTGCTAC 59.865 47.826 0.00 0.00 0.00 3.58
177 178 3.384168 ACATACAATCCCCAGTCTGCTA 58.616 45.455 0.00 0.00 0.00 3.49
178 179 2.200081 ACATACAATCCCCAGTCTGCT 58.800 47.619 0.00 0.00 0.00 4.24
179 180 2.717639 ACATACAATCCCCAGTCTGC 57.282 50.000 0.00 0.00 0.00 4.26
180 181 5.982890 AAAAACATACAATCCCCAGTCTG 57.017 39.130 0.00 0.00 0.00 3.51
241 242 9.255304 GGCATGTTTTTCACTTATAAAGAAACA 57.745 29.630 10.61 8.70 39.09 2.83
276 277 6.908825 TGAAAAATAGAAGCATGTGTGGTAC 58.091 36.000 0.00 0.00 34.36 3.34
830 847 6.749118 GCAAATCCAGTCTGATATTGAACAAC 59.251 38.462 0.00 0.00 0.00 3.32
849 866 3.863142 AAATGTGGAGCAGAGCAAATC 57.137 42.857 0.00 0.00 0.00 2.17
1055 1078 0.585357 GATAAGCAGCAGACATGGCG 59.415 55.000 0.00 0.00 36.08 5.69
1301 1340 1.889829 CGGAAGCCTCCCTCTGTATAG 59.110 57.143 0.00 0.00 38.71 1.31
1350 1389 2.296792 GGAACGGAGGGAGTACTAGTC 58.703 57.143 0.00 0.00 0.00 2.59
1368 1407 9.793259 AGACAAATCTAAGACAAGTAATTTGGA 57.207 29.630 9.60 0.00 38.04 3.53
1377 1416 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1378 1417 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1379 1418 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1381 1420 7.230712 TGCATCCGTATCTAGACAAATCTAAGA 59.769 37.037 0.00 0.00 36.98 2.10
1382 1421 7.371159 TGCATCCGTATCTAGACAAATCTAAG 58.629 38.462 0.00 0.00 36.98 2.18
1384 1423 6.894339 TGCATCCGTATCTAGACAAATCTA 57.106 37.500 0.00 0.00 36.29 1.98
1385 1424 5.791336 TGCATCCGTATCTAGACAAATCT 57.209 39.130 0.00 0.00 39.15 2.40
1386 1425 6.393990 AGATGCATCCGTATCTAGACAAATC 58.606 40.000 23.06 0.00 42.15 2.17
1387 1426 6.352016 AGATGCATCCGTATCTAGACAAAT 57.648 37.500 23.06 0.00 42.15 2.32
1394 1433 9.511272 TTTTAGTACTAGATGCATCCGTATCTA 57.489 33.333 23.06 20.13 42.15 1.98
1395 1434 7.997773 TTTAGTACTAGATGCATCCGTATCT 57.002 36.000 23.06 20.89 45.39 1.98
1396 1435 9.077674 CATTTTAGTACTAGATGCATCCGTATC 57.922 37.037 23.06 16.40 34.68 2.24
1397 1436 8.803235 TCATTTTAGTACTAGATGCATCCGTAT 58.197 33.333 23.06 14.88 0.00 3.06
1398 1437 8.173542 TCATTTTAGTACTAGATGCATCCGTA 57.826 34.615 23.06 19.92 0.00 4.02
1400 1439 7.148641 ACTCATTTTAGTACTAGATGCATCCG 58.851 38.462 23.06 16.38 0.00 4.18
1401 1440 8.364142 AGACTCATTTTAGTACTAGATGCATCC 58.636 37.037 23.06 7.42 0.00 3.51
1404 1443 9.628500 TCTAGACTCATTTTAGTACTAGATGCA 57.372 33.333 17.25 0.00 34.69 3.96
1412 1451 9.828852 CGGATGTATCTAGACTCATTTTAGTAC 57.171 37.037 11.25 0.88 0.00 2.73
1413 1452 9.570468 ACGGATGTATCTAGACTCATTTTAGTA 57.430 33.333 11.25 0.00 0.00 1.82
1414 1453 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
1430 1469 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
1431 1470 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
1432 1471 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
1433 1472 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
1434 1473 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
1435 1474 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1436 1475 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
1437 1476 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1438 1477 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1440 1479 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
1441 1480 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
1442 1481 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
1443 1482 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
1444 1483 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
1445 1484 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
1446 1485 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
1447 1486 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
1448 1487 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
1449 1488 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
1450 1489 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
1451 1490 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
1452 1491 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
1453 1492 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
1454 1493 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1455 1494 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1456 1495 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1457 1496 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1458 1497 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1459 1498 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1460 1499 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1461 1500 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1462 1501 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1463 1502 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1464 1503 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1465 1504 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1466 1505 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1467 1506 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
1468 1507 3.294214 TGATTACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
1469 1508 3.243468 GCTGATTACTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
1470 1509 2.694109 GCTGATTACTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
1471 1510 2.091775 AGCTGATTACTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
1472 1511 2.588620 AGCTGATTACTACTCCCTCCG 58.411 52.381 0.00 0.00 0.00 4.63
1473 1512 6.486941 AGTATAGCTGATTACTACTCCCTCC 58.513 44.000 0.00 0.00 0.00 4.30
1543 1582 5.009710 GGGACCTACAAAAAGAAGGAAACAG 59.990 44.000 0.00 0.00 34.34 3.16
1608 1647 1.140312 TTTGTCCAGAGGAGCCAGTT 58.860 50.000 0.00 0.00 29.39 3.16
1636 1675 4.531659 AACTCGTTGTACTTTGCAAGAC 57.468 40.909 0.00 0.10 0.00 3.01
1661 1700 5.047377 TCCAAATCCAAGCCTTGTTACAATC 60.047 40.000 3.37 0.00 0.00 2.67
1664 1703 3.826157 CTCCAAATCCAAGCCTTGTTACA 59.174 43.478 3.37 0.00 0.00 2.41
1696 1735 1.760613 CGCCAGTCTTCCCTATGGTTA 59.239 52.381 0.00 0.00 35.17 2.85
1716 1757 3.265791 CTGACAGCATCAAAGAGGGTAC 58.734 50.000 0.00 0.00 36.69 3.34
1791 1947 0.035630 CCTCTTTGCCTCCTCCAGTG 60.036 60.000 0.00 0.00 0.00 3.66
1799 1955 1.101331 CCTGAATGCCTCTTTGCCTC 58.899 55.000 0.00 0.00 0.00 4.70
1832 1988 2.125512 AGCGTGATTCCAGCCGAC 60.126 61.111 0.00 0.00 0.00 4.79
1833 1989 2.125552 CAGCGTGATTCCAGCCGA 60.126 61.111 0.00 0.00 0.00 5.54
1834 1990 3.869272 GCAGCGTGATTCCAGCCG 61.869 66.667 0.00 0.00 0.00 5.52
1835 1991 1.986575 GAAGCAGCGTGATTCCAGCC 61.987 60.000 5.14 0.00 36.84 4.85
1836 1992 1.023513 AGAAGCAGCGTGATTCCAGC 61.024 55.000 10.82 0.00 43.24 4.85
1837 1993 0.725686 CAGAAGCAGCGTGATTCCAG 59.274 55.000 10.82 3.36 43.24 3.86
1838 1994 0.035317 ACAGAAGCAGCGTGATTCCA 59.965 50.000 10.82 0.00 43.24 3.53
1839 1995 1.135859 CAACAGAAGCAGCGTGATTCC 60.136 52.381 10.82 0.00 43.24 3.01
1840 1996 1.532868 ACAACAGAAGCAGCGTGATTC 59.467 47.619 7.58 7.58 42.60 2.52
1841 1997 1.597742 ACAACAGAAGCAGCGTGATT 58.402 45.000 0.00 0.00 0.00 2.57
1842 1998 1.597742 AACAACAGAAGCAGCGTGAT 58.402 45.000 0.00 0.00 0.00 3.06
1843 1999 2.232756 TAACAACAGAAGCAGCGTGA 57.767 45.000 0.00 0.00 0.00 4.35
1844 2000 3.228749 CATTAACAACAGAAGCAGCGTG 58.771 45.455 0.00 0.00 0.00 5.34
1845 2001 2.226437 CCATTAACAACAGAAGCAGCGT 59.774 45.455 0.00 0.00 0.00 5.07
1846 2002 2.483877 TCCATTAACAACAGAAGCAGCG 59.516 45.455 0.00 0.00 0.00 5.18
1847 2003 3.753272 TCTCCATTAACAACAGAAGCAGC 59.247 43.478 0.00 0.00 0.00 5.25
1848 2004 5.615544 CGTTCTCCATTAACAACAGAAGCAG 60.616 44.000 0.00 0.00 0.00 4.24
1849 2005 4.213270 CGTTCTCCATTAACAACAGAAGCA 59.787 41.667 0.00 0.00 0.00 3.91
1850 2006 4.712763 CGTTCTCCATTAACAACAGAAGC 58.287 43.478 0.00 0.00 0.00 3.86
1851 2007 4.213270 TGCGTTCTCCATTAACAACAGAAG 59.787 41.667 0.00 0.00 0.00 2.85
1852 2008 4.130857 TGCGTTCTCCATTAACAACAGAA 58.869 39.130 0.00 0.00 0.00 3.02
1853 2009 3.734463 TGCGTTCTCCATTAACAACAGA 58.266 40.909 0.00 0.00 0.00 3.41
1854 2010 4.481930 TTGCGTTCTCCATTAACAACAG 57.518 40.909 0.00 0.00 0.00 3.16
1855 2011 4.576873 TCTTTGCGTTCTCCATTAACAACA 59.423 37.500 0.00 0.00 0.00 3.33
1856 2012 5.103290 TCTTTGCGTTCTCCATTAACAAC 57.897 39.130 0.00 0.00 0.00 3.32
1857 2013 4.215399 CCTCTTTGCGTTCTCCATTAACAA 59.785 41.667 0.00 0.00 0.00 2.83
1858 2014 3.751175 CCTCTTTGCGTTCTCCATTAACA 59.249 43.478 0.00 0.00 0.00 2.41
1859 2015 3.426292 GCCTCTTTGCGTTCTCCATTAAC 60.426 47.826 0.00 0.00 0.00 2.01
1860 2016 2.747446 GCCTCTTTGCGTTCTCCATTAA 59.253 45.455 0.00 0.00 0.00 1.40
1861 2017 2.290008 TGCCTCTTTGCGTTCTCCATTA 60.290 45.455 0.00 0.00 0.00 1.90
1862 2018 1.168714 GCCTCTTTGCGTTCTCCATT 58.831 50.000 0.00 0.00 0.00 3.16
1863 2019 0.036732 TGCCTCTTTGCGTTCTCCAT 59.963 50.000 0.00 0.00 0.00 3.41
1864 2020 0.036732 ATGCCTCTTTGCGTTCTCCA 59.963 50.000 0.00 0.00 0.00 3.86
1865 2021 1.168714 AATGCCTCTTTGCGTTCTCC 58.831 50.000 0.00 0.00 35.62 3.71
1869 2025 0.883833 CCTGAATGCCTCTTTGCGTT 59.116 50.000 0.00 0.00 42.94 4.84
1870 2026 0.036732 TCCTGAATGCCTCTTTGCGT 59.963 50.000 0.00 0.00 0.00 5.24
1871 2027 1.131883 CTTCCTGAATGCCTCTTTGCG 59.868 52.381 0.00 0.00 0.00 4.85
1872 2028 2.440409 TCTTCCTGAATGCCTCTTTGC 58.560 47.619 0.00 0.00 0.00 3.68
1882 2038 4.205587 GACCATCTGCATTCTTCCTGAAT 58.794 43.478 0.00 0.00 45.52 2.57
1883 2039 3.614092 GACCATCTGCATTCTTCCTGAA 58.386 45.455 0.00 0.00 39.24 3.02
1884 2040 2.419159 CGACCATCTGCATTCTTCCTGA 60.419 50.000 0.00 0.00 0.00 3.86
1885 2041 1.938577 CGACCATCTGCATTCTTCCTG 59.061 52.381 0.00 0.00 0.00 3.86
1886 2042 1.134280 CCGACCATCTGCATTCTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
1887 2043 1.303309 CCGACCATCTGCATTCTTCC 58.697 55.000 0.00 0.00 0.00 3.46
1888 2044 0.659957 GCCGACCATCTGCATTCTTC 59.340 55.000 0.00 0.00 0.00 2.87
1889 2045 0.254178 AGCCGACCATCTGCATTCTT 59.746 50.000 0.00 0.00 0.00 2.52
1890 2046 0.463295 CAGCCGACCATCTGCATTCT 60.463 55.000 0.00 0.00 0.00 2.40
1891 2047 1.442526 CCAGCCGACCATCTGCATTC 61.443 60.000 0.00 0.00 0.00 2.67
1892 2048 1.452651 CCAGCCGACCATCTGCATT 60.453 57.895 0.00 0.00 0.00 3.56
1893 2049 1.913951 TTCCAGCCGACCATCTGCAT 61.914 55.000 0.00 0.00 0.00 3.96
1894 2050 1.913951 ATTCCAGCCGACCATCTGCA 61.914 55.000 0.00 0.00 0.00 4.41
1895 2051 1.153086 ATTCCAGCCGACCATCTGC 60.153 57.895 0.00 0.00 0.00 4.26
1896 2052 0.178767 TGATTCCAGCCGACCATCTG 59.821 55.000 0.00 0.00 0.00 2.90
1897 2053 0.179000 GTGATTCCAGCCGACCATCT 59.821 55.000 0.00 0.00 0.00 2.90
1898 2054 0.107703 TGTGATTCCAGCCGACCATC 60.108 55.000 0.00 0.00 0.00 3.51
1899 2055 0.392998 GTGTGATTCCAGCCGACCAT 60.393 55.000 0.00 0.00 0.00 3.55
1900 2056 1.003839 GTGTGATTCCAGCCGACCA 60.004 57.895 0.00 0.00 0.00 4.02
1901 2057 1.021390 CAGTGTGATTCCAGCCGACC 61.021 60.000 0.00 0.00 0.00 4.79
2204 2375 1.444836 CTAGTCTATCCTCGGCCTCG 58.555 60.000 0.00 0.00 37.82 4.63
2205 2376 1.170442 GCTAGTCTATCCTCGGCCTC 58.830 60.000 0.00 0.00 0.00 4.70
2206 2377 0.251430 GGCTAGTCTATCCTCGGCCT 60.251 60.000 0.00 0.00 33.43 5.19
2207 2378 1.252215 GGGCTAGTCTATCCTCGGCC 61.252 65.000 0.00 0.00 36.04 6.13
2208 2379 0.251430 AGGGCTAGTCTATCCTCGGC 60.251 60.000 0.00 0.00 0.00 5.54
2209 2380 1.202952 ACAGGGCTAGTCTATCCTCGG 60.203 57.143 0.00 0.00 0.00 4.63
2210 2381 2.156098 GACAGGGCTAGTCTATCCTCG 58.844 57.143 0.00 0.00 33.29 4.63
2240 2424 9.835389 ACACCTACAAAAATACAGTACAAGTTA 57.165 29.630 0.00 0.00 0.00 2.24
2249 2433 6.636850 GCAACTCAACACCTACAAAAATACAG 59.363 38.462 0.00 0.00 0.00 2.74
2250 2434 6.320164 AGCAACTCAACACCTACAAAAATACA 59.680 34.615 0.00 0.00 0.00 2.29
2251 2435 6.735130 AGCAACTCAACACCTACAAAAATAC 58.265 36.000 0.00 0.00 0.00 1.89
2252 2436 6.952773 AGCAACTCAACACCTACAAAAATA 57.047 33.333 0.00 0.00 0.00 1.40
2253 2437 5.852282 AGCAACTCAACACCTACAAAAAT 57.148 34.783 0.00 0.00 0.00 1.82
2315 2505 1.227089 CTGAATGGAGCCTCGGTCG 60.227 63.158 0.00 0.00 0.00 4.79
2349 2542 2.088674 ATATCGACAGGGGCTGCGAC 62.089 60.000 0.00 0.00 40.45 5.19
2350 2543 0.538746 TATATCGACAGGGGCTGCGA 60.539 55.000 0.00 0.00 41.26 5.10
2351 2544 0.532573 ATATATCGACAGGGGCTGCG 59.467 55.000 0.00 0.00 34.37 5.18
2352 2545 1.827969 AGATATATCGACAGGGGCTGC 59.172 52.381 7.08 0.00 34.37 5.25
2410 2660 5.876357 ACTTAATACTTTCCCAAGAGTGCA 58.124 37.500 0.00 0.00 33.72 4.57
2428 2678 4.558178 CAATGCATGTTCAGCCAACTTAA 58.442 39.130 0.00 0.00 35.79 1.85
2445 2695 2.223665 GCAGACTAGGAAATGCCAATGC 60.224 50.000 0.00 0.00 40.02 3.56
2446 2696 3.705043 GCAGACTAGGAAATGCCAATG 57.295 47.619 0.00 0.00 40.02 2.82
2528 2778 5.423610 ACTCATGCTCATGGAAACTACTACT 59.576 40.000 9.69 0.00 39.24 2.57
2529 2779 5.521735 CACTCATGCTCATGGAAACTACTAC 59.478 44.000 9.69 0.00 39.24 2.73
2530 2780 5.422012 TCACTCATGCTCATGGAAACTACTA 59.578 40.000 9.69 0.00 39.24 1.82
2579 2829 8.034804 ACATAATATCAGAAACTGGGCAAAAAC 58.965 33.333 0.00 0.00 31.51 2.43
2635 2885 4.938832 CGACCCACCAACAAGATATGTAAA 59.061 41.667 0.00 0.00 42.99 2.01
2643 2893 1.418264 TCAATCGACCCACCAACAAGA 59.582 47.619 0.00 0.00 0.00 3.02
2671 2921 3.993920 TCTTGGTTACGTGGTTTCTACC 58.006 45.455 0.00 0.00 45.26 3.18
2687 2937 9.853177 AATTAGTAATGATAACCCTCTTCTTGG 57.147 33.333 0.00 0.00 0.00 3.61
2705 2955 9.123709 GATGAACGTGCAAATCAAAATTAGTAA 57.876 29.630 0.00 0.00 0.00 2.24
2731 2981 4.084745 GCAAGCGCATGGAATAAAATCATG 60.085 41.667 15.22 0.00 40.66 3.07
2748 2998 0.320247 CCCTCTGGCTATAGCAAGCG 60.320 60.000 25.53 18.45 41.84 4.68
2848 3098 5.652014 ACATATGGGATGAACATTCACGTTT 59.348 36.000 7.80 0.00 40.49 3.60
2849 3099 5.192927 ACATATGGGATGAACATTCACGTT 58.807 37.500 7.80 0.00 40.49 3.99
2850 3100 4.780815 ACATATGGGATGAACATTCACGT 58.219 39.130 7.80 0.00 40.49 4.49
2891 3142 8.739039 TGTGTATTTTCGGATTTTGATCTGAAT 58.261 29.630 10.49 0.00 43.23 2.57
2908 3159 5.048013 GCCACCTTAGCTCTTTGTGTATTTT 60.048 40.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.