Multiple sequence alignment - TraesCS1B01G480400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G480400 chr1B 100.000 6913 0 0 1 6913 687793501 687800413 0.000000e+00 12767.0
1 TraesCS1B01G480400 chr1B 81.013 711 45 31 6096 6787 212992064 212991425 3.750000e-132 483.0
2 TraesCS1B01G480400 chr1B 81.452 372 55 9 3335 3701 231331135 231331497 6.780000e-75 292.0
3 TraesCS1B01G480400 chr1B 85.957 235 25 3 2120 2347 681991178 681991411 1.930000e-60 244.0
4 TraesCS1B01G480400 chr1B 85.062 241 28 3 2118 2351 682076471 682076232 8.960000e-59 239.0
5 TraesCS1B01G480400 chr1B 93.711 159 7 1 2465 2620 687795881 687796039 1.160000e-57 235.0
6 TraesCS1B01G480400 chr1B 93.711 159 7 1 2381 2539 687795965 687796120 1.160000e-57 235.0
7 TraesCS1B01G480400 chr1B 87.662 154 14 3 6303 6456 190110263 190110115 2.560000e-39 174.0
8 TraesCS1B01G480400 chr1B 84.615 143 19 1 3571 3713 687797029 687797168 9.350000e-29 139.0
9 TraesCS1B01G480400 chr1B 84.615 143 19 1 3529 3668 687797071 687797213 9.350000e-29 139.0
10 TraesCS1B01G480400 chr1B 82.979 141 4 7 6140 6271 190110394 190110265 7.330000e-20 110.0
11 TraesCS1B01G480400 chr1B 88.750 80 6 2 6708 6787 190110116 190110040 2.050000e-15 95.3
12 TraesCS1B01G480400 chr1B 92.857 56 1 1 1091 1143 687794411 687794466 2.070000e-10 78.7
13 TraesCS1B01G480400 chr1B 92.857 56 1 1 911 966 687794591 687794643 2.070000e-10 78.7
14 TraesCS1B01G480400 chrUn 94.190 3580 111 24 2559 6072 9570630 9574178 0.000000e+00 5369.0
15 TraesCS1B01G480400 chrUn 91.517 1002 45 13 749 1731 330274112 330273132 0.000000e+00 1343.0
16 TraesCS1B01G480400 chrUn 95.261 823 39 0 1654 2476 330273146 330272324 0.000000e+00 1304.0
17 TraesCS1B01G480400 chrUn 98.387 62 1 0 2478 2539 9570630 9570691 7.330000e-20 110.0
18 TraesCS1B01G480400 chrUn 89.796 49 2 2 1091 1139 330273960 330273915 7.490000e-05 60.2
19 TraesCS1B01G480400 chr1D 92.907 2016 64 26 3148 5103 494554642 494556638 0.000000e+00 2857.0
20 TraesCS1B01G480400 chr1D 92.553 1316 74 9 1159 2468 494552816 494554113 0.000000e+00 1866.0
21 TraesCS1B01G480400 chr1D 84.029 839 52 24 5392 6170 494557009 494557825 0.000000e+00 732.0
22 TraesCS1B01G480400 chr1D 96.467 368 10 2 2539 2906 494554020 494554384 7.670000e-169 604.0
23 TraesCS1B01G480400 chr1D 94.717 265 13 1 2849 3112 494554380 494554644 1.790000e-110 411.0
24 TraesCS1B01G480400 chr1D 78.680 727 54 48 6169 6890 114771761 114771131 2.340000e-104 390.0
25 TraesCS1B01G480400 chr1D 82.804 378 26 16 3 377 494552353 494552694 1.130000e-77 302.0
26 TraesCS1B01G480400 chr1D 83.553 152 22 1 3571 3722 494555022 494555170 9.350000e-29 139.0
27 TraesCS1B01G480400 chr1D 96.000 75 3 0 2465 2539 494554026 494554100 9.420000e-24 122.0
28 TraesCS1B01G480400 chr1D 78.767 146 11 11 6385 6515 494558466 494558606 5.750000e-11 80.5
29 TraesCS1B01G480400 chr1A 91.474 1642 63 18 3526 5103 593298743 593300371 0.000000e+00 2185.0
30 TraesCS1B01G480400 chr1A 95.336 1265 49 5 2465 3722 593297636 593298897 0.000000e+00 2001.0
31 TraesCS1B01G480400 chr1A 92.743 1185 56 12 1379 2539 593296616 593297794 0.000000e+00 1685.0
32 TraesCS1B01G480400 chr1A 89.557 699 47 12 5392 6070 593300907 593301599 0.000000e+00 863.0
33 TraesCS1B01G480400 chr1A 87.273 440 38 13 1219 1658 593296246 593296667 2.900000e-133 486.0
34 TraesCS1B01G480400 chr1A 79.724 725 53 50 6169 6890 399379978 399380611 8.230000e-119 438.0
35 TraesCS1B01G480400 chr1A 78.055 401 23 39 6170 6533 593301801 593302173 7.080000e-45 193.0
36 TraesCS1B01G480400 chr1A 92.045 88 7 0 5112 5199 455035717 455035804 2.620000e-24 124.0
37 TraesCS1B01G480400 chr1A 94.667 75 4 0 6096 6170 593301665 593301739 4.380000e-22 117.0
38 TraesCS1B01G480400 chr1A 79.024 205 15 8 6626 6829 593302173 593302350 1.580000e-21 115.0
39 TraesCS1B01G480400 chr5B 80.659 698 44 32 6110 6787 317918447 317919073 2.270000e-124 457.0
40 TraesCS1B01G480400 chr5B 94.915 177 6 1 5899 6072 317918192 317918368 2.460000e-69 274.0
41 TraesCS1B01G480400 chr7D 76.344 1116 92 85 55 1107 405691832 405690826 2.290000e-119 440.0
42 TraesCS1B01G480400 chr7D 88.281 128 9 3 1407 1534 405690940 405690819 1.550000e-31 148.0
43 TraesCS1B01G480400 chr4D 79.092 727 44 46 6165 6890 71657328 71656709 1.080000e-107 401.0
44 TraesCS1B01G480400 chr7B 81.401 414 20 22 6096 6500 652160962 652160597 1.130000e-72 285.0
45 TraesCS1B01G480400 chr7B 92.135 178 9 2 5899 6071 652161206 652161029 5.360000e-61 246.0
46 TraesCS1B01G480400 chr7B 92.941 85 6 0 5112 5196 333090237 333090321 2.620000e-24 124.0
47 TraesCS1B01G480400 chr5D 84.615 299 13 12 6175 6463 44429849 44429574 4.110000e-67 267.0
48 TraesCS1B01G480400 chr3D 85.338 266 20 10 6625 6890 548823850 548823604 2.470000e-64 257.0
49 TraesCS1B01G480400 chr3D 83.168 303 17 20 6169 6463 204971777 204972053 5.360000e-61 246.0
50 TraesCS1B01G480400 chr3D 84.000 275 16 9 6169 6443 245503516 245503270 8.960000e-59 239.0
51 TraesCS1B01G480400 chr4A 83.553 304 15 15 6169 6463 315621849 315621572 1.150000e-62 252.0
52 TraesCS1B01G480400 chr4A 83.643 269 23 9 6625 6892 315621518 315621270 4.170000e-57 233.0
53 TraesCS1B01G480400 chr4A 92.941 85 6 0 5112 5196 517657306 517657222 2.620000e-24 124.0
54 TraesCS1B01G480400 chr7A 92.941 85 6 0 5112 5196 580423997 580423913 2.620000e-24 124.0
55 TraesCS1B01G480400 chr6A 92.941 85 6 0 5112 5196 170170605 170170521 2.620000e-24 124.0
56 TraesCS1B01G480400 chr2D 92.941 85 6 0 5112 5196 188966909 188966993 2.620000e-24 124.0
57 TraesCS1B01G480400 chr2D 92.135 89 6 1 5109 5196 383812650 383812738 2.620000e-24 124.0
58 TraesCS1B01G480400 chr2B 92.941 85 6 0 5112 5196 498466953 498466869 2.620000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G480400 chr1B 687793501 687800413 6912 False 12767.000000 12767 100.000000 1 6913 1 chr1B.!!$F3 6912
1 TraesCS1B01G480400 chr1B 212991425 212992064 639 True 483.000000 483 81.013000 6096 6787 1 chr1B.!!$R1 691
2 TraesCS1B01G480400 chrUn 9570630 9574178 3548 False 2739.500000 5369 96.288500 2478 6072 2 chrUn.!!$F1 3594
3 TraesCS1B01G480400 chrUn 330272324 330274112 1788 True 902.400000 1343 92.191333 749 2476 3 chrUn.!!$R1 1727
4 TraesCS1B01G480400 chr1D 494552353 494558606 6253 False 790.388889 2857 89.088556 3 6515 9 chr1D.!!$F1 6512
5 TraesCS1B01G480400 chr1D 114771131 114771761 630 True 390.000000 390 78.680000 6169 6890 1 chr1D.!!$R1 721
6 TraesCS1B01G480400 chr1A 593296246 593302350 6104 False 955.625000 2185 88.516125 1219 6829 8 chr1A.!!$F3 5610
7 TraesCS1B01G480400 chr1A 399379978 399380611 633 False 438.000000 438 79.724000 6169 6890 1 chr1A.!!$F1 721
8 TraesCS1B01G480400 chr5B 317918192 317919073 881 False 365.500000 457 87.787000 5899 6787 2 chr5B.!!$F1 888
9 TraesCS1B01G480400 chr7D 405690819 405691832 1013 True 294.000000 440 82.312500 55 1534 2 chr7D.!!$R1 1479
10 TraesCS1B01G480400 chr4D 71656709 71657328 619 True 401.000000 401 79.092000 6165 6890 1 chr4D.!!$R1 725
11 TraesCS1B01G480400 chr7B 652160597 652161206 609 True 265.500000 285 86.768000 5899 6500 2 chr7B.!!$R1 601
12 TraesCS1B01G480400 chr4A 315621270 315621849 579 True 242.500000 252 83.598000 6169 6892 2 chr4A.!!$R2 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 634 0.038744 AACACAAGGGGCTGGATCTG 59.961 55.000 0.00 0.0 0.00 2.90 F
2498 2903 0.179084 GCTATGGACACGGCAGCTTA 60.179 55.000 0.00 0.0 0.00 3.09 F
2519 2924 0.180406 CAAGGTACCGGAGATTGGGG 59.820 60.000 9.46 0.0 0.00 4.96 F
2520 2925 0.253020 AAGGTACCGGAGATTGGGGT 60.253 55.000 9.46 0.0 37.84 4.95 F
2557 2962 0.534652 GGTGCTGCCTGAGGATGATC 60.535 60.000 0.65 0.0 0.00 2.92 F
2558 2963 0.879400 GTGCTGCCTGAGGATGATCG 60.879 60.000 0.65 0.0 0.00 3.69 F
3294 3756 1.000896 CCTTGGCCTTCCCATTCGT 60.001 57.895 3.32 0.0 44.89 3.85 F
3698 4209 1.113253 GTGCGATCGTAGATGACACG 58.887 55.000 17.81 0.0 45.12 4.49 F
5452 6305 1.229723 AAGTGGGTCGGGGGTGTAT 60.230 57.895 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 2961 0.179076 CTGCCATGTCCATAGCACGA 60.179 55.000 0.00 0.0 32.33 4.35 R
4126 4653 0.676736 CAGGCCTCTCGGGATAGTTC 59.323 60.000 0.00 0.0 37.23 3.01 R
4201 4728 1.904287 TTGGGTGGTGATAGTTGCAC 58.096 50.000 0.00 0.0 35.56 4.57 R
4655 5206 9.593134 CCACTGATAATAAGAATATACCTCTGC 57.407 37.037 0.00 0.0 0.00 4.26 R
4670 5221 6.873997 ACTTGAACATCGACCACTGATAATA 58.126 36.000 0.00 0.0 0.00 0.98 R
4717 5268 5.412904 AGGAACAATTGCAAACTAGAGTAGC 59.587 40.000 1.71 0.0 0.00 3.58 R
5427 6280 1.497161 CCCCGACCCACTTCTCTTAT 58.503 55.000 0.00 0.0 0.00 1.73 R
5521 6374 0.683412 GGTTACACTCGGGTTCACCT 59.317 55.000 0.00 0.0 36.97 4.00 R
6761 8262 0.872021 GGCATCGACGCTAGGAGTTG 60.872 60.000 2.49 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 4.292178 CTCTCCTCCGCCATCGCC 62.292 72.222 0.00 0.00 0.00 5.54
231 238 2.153401 CCACCTCCACCACCAGGAA 61.153 63.158 0.00 0.00 38.69 3.36
234 241 2.757077 CTCCACCACCAGGAACCC 59.243 66.667 0.00 0.00 38.69 4.11
246 253 3.400054 GAACCCCCTCCACCCTCG 61.400 72.222 0.00 0.00 0.00 4.63
276 295 4.087892 CTCCTCCGCCACCACCAG 62.088 72.222 0.00 0.00 0.00 4.00
291 310 2.650116 CCAGGACCACGACCAGGAG 61.650 68.421 0.00 0.00 36.38 3.69
294 313 2.262915 GACCACGACCAGGAGCAG 59.737 66.667 0.00 0.00 0.00 4.24
295 314 3.302347 GACCACGACCAGGAGCAGG 62.302 68.421 0.00 0.00 0.00 4.85
297 316 2.262915 CACGACCAGGAGCAGGAC 59.737 66.667 0.00 0.00 0.00 3.85
347 375 2.366570 GAGGGCTCTCCACCTCCT 59.633 66.667 0.57 0.00 46.01 3.69
355 383 2.260822 CTCTCCACCTCCTTCCTCAAA 58.739 52.381 0.00 0.00 0.00 2.69
381 409 4.957684 CCATCGCCATCGCTCGCT 62.958 66.667 0.00 0.00 35.26 4.93
387 415 2.279784 CCATCGCTCGCTCCTTCC 60.280 66.667 0.00 0.00 0.00 3.46
388 416 2.656651 CATCGCTCGCTCCTTCCG 60.657 66.667 0.00 0.00 0.00 4.30
422 474 2.203139 CGTGCAACACCACCAGGA 60.203 61.111 0.00 0.00 38.69 3.86
423 475 2.253758 CGTGCAACACCACCAGGAG 61.254 63.158 0.00 0.00 38.69 3.69
424 476 1.898574 GTGCAACACCACCAGGAGG 60.899 63.158 0.33 0.33 38.69 4.30
442 494 2.623431 AGGAGGAGGAGGAGCCCT 60.623 66.667 0.00 0.00 39.77 5.19
444 496 3.160748 GAGGAGGAGGAGCCCTGC 61.161 72.222 4.85 4.85 44.01 4.85
464 516 1.377202 GCCTGTTGGATGAAGCCGA 60.377 57.895 0.00 0.00 34.57 5.54
474 526 1.201429 ATGAAGCCGACCTCCACCTT 61.201 55.000 0.00 0.00 0.00 3.50
479 531 2.214216 CCGACCTCCACCTTCACCA 61.214 63.158 0.00 0.00 0.00 4.17
480 532 1.293498 CGACCTCCACCTTCACCAG 59.707 63.158 0.00 0.00 0.00 4.00
528 601 2.352805 CTCACCACCAAGGGCCTC 59.647 66.667 6.46 0.00 43.89 4.70
532 605 2.672996 CCACCAAGGGCCTCAACG 60.673 66.667 6.46 0.00 0.00 4.10
551 624 0.890996 GTCCTGGAGCAACACAAGGG 60.891 60.000 0.00 0.00 0.00 3.95
552 625 1.604593 CCTGGAGCAACACAAGGGG 60.605 63.158 0.00 0.00 0.00 4.79
553 626 2.203480 TGGAGCAACACAAGGGGC 60.203 61.111 0.00 0.00 0.00 5.80
561 634 0.038744 AACACAAGGGGCTGGATCTG 59.961 55.000 0.00 0.00 0.00 2.90
578 651 2.997315 GCCCCTCCCCAAACAAGC 60.997 66.667 0.00 0.00 0.00 4.01
580 653 1.304464 CCCCTCCCCAAACAAGCTC 60.304 63.158 0.00 0.00 0.00 4.09
582 655 1.770324 CCTCCCCAAACAAGCTCCT 59.230 57.895 0.00 0.00 0.00 3.69
583 656 0.991920 CCTCCCCAAACAAGCTCCTA 59.008 55.000 0.00 0.00 0.00 2.94
584 657 1.340114 CCTCCCCAAACAAGCTCCTAC 60.340 57.143 0.00 0.00 0.00 3.18
585 658 1.351017 CTCCCCAAACAAGCTCCTACA 59.649 52.381 0.00 0.00 0.00 2.74
589 662 2.094545 CCCAAACAAGCTCCTACATTGC 60.095 50.000 0.00 0.00 0.00 3.56
591 664 3.366679 CCAAACAAGCTCCTACATTGCTG 60.367 47.826 0.00 0.00 37.11 4.41
592 665 2.867109 ACAAGCTCCTACATTGCTGT 57.133 45.000 0.00 0.00 37.11 4.40
593 666 2.704572 ACAAGCTCCTACATTGCTGTC 58.295 47.619 0.00 0.00 37.11 3.51
594 667 2.012673 CAAGCTCCTACATTGCTGTCC 58.987 52.381 0.00 0.00 37.11 4.02
595 668 1.279496 AGCTCCTACATTGCTGTCCA 58.721 50.000 0.00 0.00 36.79 4.02
596 669 1.842562 AGCTCCTACATTGCTGTCCAT 59.157 47.619 0.00 0.00 36.79 3.41
597 670 2.158842 AGCTCCTACATTGCTGTCCATC 60.159 50.000 0.00 0.00 36.79 3.51
598 671 2.843701 CTCCTACATTGCTGTCCATCC 58.156 52.381 0.00 0.00 36.79 3.51
599 672 2.171237 CTCCTACATTGCTGTCCATCCA 59.829 50.000 0.00 0.00 36.79 3.41
600 673 2.171237 TCCTACATTGCTGTCCATCCAG 59.829 50.000 0.00 0.00 36.79 3.86
601 674 2.569059 CTACATTGCTGTCCATCCAGG 58.431 52.381 0.00 0.00 36.79 4.45
613 686 1.145598 ATCCAGGACGATGCTGCTG 59.854 57.895 0.00 0.00 34.22 4.41
637 710 2.271173 GGGACCAACATCCGGACC 59.729 66.667 6.12 0.14 39.97 4.46
651 733 3.720193 GACCAGCTGCACTGCACG 61.720 66.667 8.66 0.00 45.78 5.34
655 737 2.356793 AGCTGCACTGCACGAGTC 60.357 61.111 0.00 0.00 33.79 3.36
659 741 2.167808 CTGCACTGCACGAGTCTTGC 62.168 60.000 14.37 14.37 40.63 4.01
660 742 1.958205 GCACTGCACGAGTCTTGCT 60.958 57.895 20.83 0.51 40.86 3.91
691 773 4.748892 TCAGTTCAAGCTAGTAGATGCAC 58.251 43.478 0.00 0.06 0.00 4.57
698 780 1.202580 GCTAGTAGATGCACCCACCTG 60.203 57.143 0.00 0.00 0.00 4.00
699 781 0.830648 TAGTAGATGCACCCACCTGC 59.169 55.000 0.00 0.00 37.70 4.85
700 782 0.911525 AGTAGATGCACCCACCTGCT 60.912 55.000 0.00 0.00 38.07 4.24
701 783 0.745845 GTAGATGCACCCACCTGCTG 60.746 60.000 0.00 0.00 38.07 4.41
707 789 4.603535 ACCCACCTGCTGCCCAAC 62.604 66.667 0.00 0.00 0.00 3.77
724 806 4.593033 CCCCAAGGGCTCATGATG 57.407 61.111 0.00 0.00 35.35 3.07
725 807 1.831286 CCCCAAGGGCTCATGATGC 60.831 63.158 0.00 2.02 35.35 3.91
731 813 2.921435 GGCTCATGATGCCCAGGA 59.079 61.111 19.68 0.00 44.32 3.86
736 818 2.022195 CTCATGATGCCCAGGAACAAG 58.978 52.381 0.00 0.00 34.91 3.16
741 823 2.019984 GATGCCCAGGAACAAGATGAC 58.980 52.381 0.00 0.00 0.00 3.06
789 871 2.441750 TCATGGGCTGGGATTTAGTACC 59.558 50.000 0.00 0.00 0.00 3.34
790 872 1.218844 TGGGCTGGGATTTAGTACCC 58.781 55.000 0.00 0.00 45.74 3.69
815 897 1.830279 CAGGATGGTGTTGATGCTGT 58.170 50.000 0.00 0.00 35.25 4.40
816 898 1.741706 CAGGATGGTGTTGATGCTGTC 59.258 52.381 0.00 0.00 35.25 3.51
843 937 1.197430 AAGGTCAGGAGGTGCTGGAG 61.197 60.000 0.00 0.00 0.00 3.86
925 1019 1.395954 CTGTCGCTGTTGGTGATGATG 59.604 52.381 0.00 0.00 36.79 3.07
926 1020 1.001860 TGTCGCTGTTGGTGATGATGA 59.998 47.619 0.00 0.00 36.79 2.92
927 1021 2.283298 GTCGCTGTTGGTGATGATGAT 58.717 47.619 0.00 0.00 36.79 2.45
969 1063 3.705072 AGCAATGTACTAGTACCACCTCC 59.295 47.826 26.41 12.20 35.26 4.30
987 1081 3.306641 CCTCCTCCTCTTGTGAAGAACTG 60.307 52.174 0.00 0.00 37.02 3.16
1023 1133 5.378230 TGAAAGATGATGGTGCTAAGGAT 57.622 39.130 0.00 0.00 0.00 3.24
1061 1171 3.023119 AGCAAGGTGTCATTGTTGAACA 58.977 40.909 0.00 0.00 32.48 3.18
1067 1177 3.632145 GGTGTCATTGTTGAACAAGAGGT 59.368 43.478 16.43 0.00 41.94 3.85
1277 1390 1.633774 GGACAAGAGACACTGGGAGA 58.366 55.000 0.00 0.00 0.00 3.71
1340 1453 4.498177 GCAAGTTCAAGAGGAAGGTGAAAC 60.498 45.833 0.00 0.00 35.82 2.78
1398 1733 1.533625 TGGAGCAATGCACCACTTAC 58.466 50.000 20.10 0.00 43.74 2.34
1484 1819 1.991813 TGTCATTGACCAAGGGGATGA 59.008 47.619 14.05 0.00 38.05 2.92
1485 1820 2.582172 TGTCATTGACCAAGGGGATGAT 59.418 45.455 14.05 0.00 38.05 2.45
1486 1821 2.954318 GTCATTGACCAAGGGGATGATG 59.046 50.000 5.44 0.00 38.05 3.07
1523 1858 8.158132 AGATGATGATAATGCTGTCAAAGATCT 58.842 33.333 0.00 0.00 0.00 2.75
1599 1934 0.179089 CTGCTGTCGAGGATCAAGGG 60.179 60.000 0.00 0.00 33.17 3.95
1618 1953 2.165030 GGGAAGAATGTGGAGCAATGTG 59.835 50.000 0.00 0.00 0.00 3.21
1621 1956 0.179156 GAATGTGGAGCAATGTGCCG 60.179 55.000 0.00 0.00 46.52 5.69
1695 2094 1.492993 AAGAGGTGGTGGAGGAAGGC 61.493 60.000 0.00 0.00 0.00 4.35
1732 2131 5.163131 ACCATGGATGATGATGATTCTGTCA 60.163 40.000 21.47 0.00 42.06 3.58
1829 2234 4.616835 GCAATGTTCAAGAGCAACTAAGGG 60.617 45.833 0.00 0.00 0.00 3.95
1876 2281 1.961277 GTGGTGGAGCAAGGTGTCG 60.961 63.158 0.00 0.00 0.00 4.35
1878 2283 1.668151 GGTGGAGCAAGGTGTCGTC 60.668 63.158 0.00 0.00 0.00 4.20
1886 2291 0.531090 CAAGGTGTCGTCGACCCAAA 60.531 55.000 25.25 7.23 33.51 3.28
1960 2365 1.136828 GGGTACAGTGCCCATGGATA 58.863 55.000 21.49 0.00 45.40 2.59
2007 2412 1.466856 CAGTGGTGCAATATGCCAGT 58.533 50.000 0.00 0.00 44.23 4.00
2058 2463 3.449918 TCCTGTGGAGGAACATGATACA 58.550 45.455 0.00 0.00 46.19 2.29
2115 2520 6.712095 GCAGAACCAAGGATGATATTGATGTA 59.288 38.462 0.00 0.00 0.00 2.29
2202 2607 3.214328 TGCTTTGGAAGGTCAGAAGAAC 58.786 45.455 0.00 0.00 0.00 3.01
2347 2752 6.048732 TCACTGTTGATAAGCACAAGGATA 57.951 37.500 0.00 0.00 0.00 2.59
2415 2820 2.168521 TGCTATGGACAGGACAGCTTAC 59.831 50.000 0.00 0.00 33.38 2.34
2425 2830 1.626825 GGACAGCTTACCAAGGTACCA 59.373 52.381 15.94 0.00 37.49 3.25
2427 2832 2.565834 GACAGCTTACCAAGGTACCAGA 59.434 50.000 15.94 0.00 37.49 3.86
2446 2851 6.494666 CCAGAGATTGGGGTATAGTTAACA 57.505 41.667 8.61 0.00 43.75 2.41
2482 2887 0.676184 GCCTGAGGATGATCGTGCTA 59.324 55.000 9.17 0.00 0.00 3.49
2483 2888 1.274728 GCCTGAGGATGATCGTGCTAT 59.725 52.381 9.17 0.00 0.00 2.97
2484 2889 2.930023 GCCTGAGGATGATCGTGCTATG 60.930 54.545 9.17 5.22 0.00 2.23
2485 2890 2.353505 CCTGAGGATGATCGTGCTATGG 60.354 54.545 9.17 10.32 0.00 2.74
2486 2891 2.560105 CTGAGGATGATCGTGCTATGGA 59.440 50.000 9.17 0.00 0.00 3.41
2487 2892 2.297315 TGAGGATGATCGTGCTATGGAC 59.703 50.000 9.17 0.00 0.00 4.02
2488 2893 2.297315 GAGGATGATCGTGCTATGGACA 59.703 50.000 9.17 0.00 0.00 4.02
2489 2894 2.036475 AGGATGATCGTGCTATGGACAC 59.964 50.000 7.24 0.00 34.62 3.67
2494 2899 3.799753 GTGCTATGGACACGGCAG 58.200 61.111 2.12 0.00 35.29 4.85
2495 2900 2.125147 TGCTATGGACACGGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
2496 2901 2.187946 GCTATGGACACGGCAGCT 59.812 61.111 0.00 0.00 0.00 4.24
2497 2902 1.450312 GCTATGGACACGGCAGCTT 60.450 57.895 0.00 0.00 0.00 3.74
2498 2903 0.179084 GCTATGGACACGGCAGCTTA 60.179 55.000 0.00 0.00 0.00 3.09
2499 2904 1.541233 GCTATGGACACGGCAGCTTAT 60.541 52.381 0.00 0.00 0.00 1.73
2500 2905 2.408050 CTATGGACACGGCAGCTTATC 58.592 52.381 0.00 0.00 0.00 1.75
2501 2906 0.541392 ATGGACACGGCAGCTTATCA 59.459 50.000 0.00 0.00 0.00 2.15
2502 2907 0.323302 TGGACACGGCAGCTTATCAA 59.677 50.000 0.00 0.00 0.00 2.57
2503 2908 1.009829 GGACACGGCAGCTTATCAAG 58.990 55.000 0.00 0.00 0.00 3.02
2504 2909 1.009829 GACACGGCAGCTTATCAAGG 58.990 55.000 0.00 0.00 0.00 3.61
2505 2910 0.324943 ACACGGCAGCTTATCAAGGT 59.675 50.000 0.00 0.00 40.45 3.50
2506 2911 1.553248 ACACGGCAGCTTATCAAGGTA 59.447 47.619 0.00 0.00 37.49 3.08
2507 2912 1.933853 CACGGCAGCTTATCAAGGTAC 59.066 52.381 0.00 0.00 37.49 3.34
2508 2913 1.134491 ACGGCAGCTTATCAAGGTACC 60.134 52.381 2.73 2.73 38.73 3.34
2509 2914 1.583054 GGCAGCTTATCAAGGTACCG 58.417 55.000 6.18 0.00 37.49 4.02
2510 2915 1.583054 GCAGCTTATCAAGGTACCGG 58.417 55.000 6.18 0.00 37.49 5.28
2511 2916 1.138266 GCAGCTTATCAAGGTACCGGA 59.862 52.381 9.46 9.06 37.49 5.14
2512 2917 2.803492 GCAGCTTATCAAGGTACCGGAG 60.803 54.545 9.46 0.25 37.49 4.63
2513 2918 2.693591 CAGCTTATCAAGGTACCGGAGA 59.306 50.000 9.46 6.35 37.49 3.71
2514 2919 3.322254 CAGCTTATCAAGGTACCGGAGAT 59.678 47.826 9.46 17.10 37.49 2.75
2515 2920 3.967987 AGCTTATCAAGGTACCGGAGATT 59.032 43.478 9.46 0.40 37.49 2.40
2516 2921 4.058817 GCTTATCAAGGTACCGGAGATTG 58.941 47.826 9.46 11.87 0.00 2.67
2517 2922 4.632153 CTTATCAAGGTACCGGAGATTGG 58.368 47.826 9.46 10.07 0.00 3.16
2518 2923 1.200519 TCAAGGTACCGGAGATTGGG 58.799 55.000 9.46 0.00 0.00 4.12
2519 2924 0.180406 CAAGGTACCGGAGATTGGGG 59.820 60.000 9.46 0.00 0.00 4.96
2520 2925 0.253020 AAGGTACCGGAGATTGGGGT 60.253 55.000 9.46 0.00 37.84 4.95
2521 2926 0.638292 AGGTACCGGAGATTGGGGTA 59.362 55.000 9.46 0.00 35.28 3.69
2522 2927 1.222298 AGGTACCGGAGATTGGGGTAT 59.778 52.381 9.46 0.00 35.28 2.73
2523 2928 2.452047 AGGTACCGGAGATTGGGGTATA 59.548 50.000 9.46 0.00 35.28 1.47
2524 2929 2.830321 GGTACCGGAGATTGGGGTATAG 59.170 54.545 9.46 0.00 35.28 1.31
2525 2930 2.789323 ACCGGAGATTGGGGTATAGT 57.211 50.000 9.46 0.00 30.76 2.12
2526 2931 3.056201 ACCGGAGATTGGGGTATAGTT 57.944 47.619 9.46 0.00 30.76 2.24
2527 2932 4.203342 ACCGGAGATTGGGGTATAGTTA 57.797 45.455 9.46 0.00 30.76 2.24
2528 2933 4.559726 ACCGGAGATTGGGGTATAGTTAA 58.440 43.478 9.46 0.00 30.76 2.01
2529 2934 4.346127 ACCGGAGATTGGGGTATAGTTAAC 59.654 45.833 9.46 0.00 30.76 2.01
2530 2935 4.345837 CCGGAGATTGGGGTATAGTTAACA 59.654 45.833 8.61 0.00 0.00 2.41
2531 2936 5.163280 CCGGAGATTGGGGTATAGTTAACAA 60.163 44.000 8.61 0.00 0.00 2.83
2532 2937 5.989777 CGGAGATTGGGGTATAGTTAACAAG 59.010 44.000 8.61 0.00 0.00 3.16
2533 2938 6.296803 GGAGATTGGGGTATAGTTAACAAGG 58.703 44.000 8.61 0.00 0.00 3.61
2534 2939 6.100714 GGAGATTGGGGTATAGTTAACAAGGA 59.899 42.308 8.61 0.00 0.00 3.36
2535 2940 7.138054 AGATTGGGGTATAGTTAACAAGGAG 57.862 40.000 8.61 0.00 0.00 3.69
2536 2941 6.906901 AGATTGGGGTATAGTTAACAAGGAGA 59.093 38.462 8.61 0.00 0.00 3.71
2537 2942 6.956102 TTGGGGTATAGTTAACAAGGAGAA 57.044 37.500 8.61 0.00 0.00 2.87
2538 2943 6.555463 TGGGGTATAGTTAACAAGGAGAAG 57.445 41.667 8.61 0.00 0.00 2.85
2539 2944 5.427481 TGGGGTATAGTTAACAAGGAGAAGG 59.573 44.000 8.61 0.00 0.00 3.46
2540 2945 5.427806 GGGGTATAGTTAACAAGGAGAAGGT 59.572 44.000 8.61 0.00 0.00 3.50
2541 2946 6.346896 GGGTATAGTTAACAAGGAGAAGGTG 58.653 44.000 8.61 0.00 0.00 4.00
2542 2947 5.816258 GGTATAGTTAACAAGGAGAAGGTGC 59.184 44.000 8.61 0.00 0.00 5.01
2543 2948 5.763876 ATAGTTAACAAGGAGAAGGTGCT 57.236 39.130 8.61 0.00 0.00 4.40
2544 2949 3.744660 AGTTAACAAGGAGAAGGTGCTG 58.255 45.455 8.61 0.00 0.00 4.41
2545 2950 2.185004 TAACAAGGAGAAGGTGCTGC 57.815 50.000 0.00 0.00 0.00 5.25
2546 2951 0.538287 AACAAGGAGAAGGTGCTGCC 60.538 55.000 0.00 0.00 37.58 4.85
2555 2960 2.993008 GGTGCTGCCTGAGGATGA 59.007 61.111 0.65 0.00 0.00 2.92
2556 2961 1.530771 GGTGCTGCCTGAGGATGAT 59.469 57.895 0.65 0.00 0.00 2.45
2557 2962 0.534652 GGTGCTGCCTGAGGATGATC 60.535 60.000 0.65 0.00 0.00 2.92
2558 2963 0.879400 GTGCTGCCTGAGGATGATCG 60.879 60.000 0.65 0.00 0.00 3.69
2559 2964 1.332889 TGCTGCCTGAGGATGATCGT 61.333 55.000 0.65 0.00 0.00 3.73
2560 2965 0.879400 GCTGCCTGAGGATGATCGTG 60.879 60.000 0.65 0.00 0.00 4.35
2561 2966 0.879400 CTGCCTGAGGATGATCGTGC 60.879 60.000 0.65 0.00 0.00 5.34
2562 2967 1.332889 TGCCTGAGGATGATCGTGCT 61.333 55.000 8.93 8.93 0.00 4.40
2570 2975 2.902486 AGGATGATCGTGCTATGGACAT 59.098 45.455 7.24 0.00 0.00 3.06
2624 3029 8.522003 GGGTATAGTTAGCAAGGAGAAGTATAC 58.478 40.741 0.00 0.00 39.29 1.47
2649 3054 3.323115 TGCCTGCTAGAAGATATCCACAG 59.677 47.826 0.00 0.00 0.00 3.66
2815 3221 6.598850 AGAAAACTTTGTTGGTTTCCGTACTA 59.401 34.615 0.00 0.00 36.09 1.82
2819 3225 4.576216 TTGTTGGTTTCCGTACTACGTA 57.424 40.909 7.79 0.00 40.58 3.57
2822 3228 4.277174 TGTTGGTTTCCGTACTACGTAGAA 59.723 41.667 28.74 9.72 40.58 2.10
2823 3229 5.048083 TGTTGGTTTCCGTACTACGTAGAAT 60.048 40.000 28.74 10.20 40.58 2.40
2927 3386 6.498651 AGGTGGTACTGGGATCTATATTTCAG 59.501 42.308 0.00 0.00 0.00 3.02
3033 3495 1.480137 CTCTCGCATCCTTTCTGGTCT 59.520 52.381 0.00 0.00 37.07 3.85
3056 3518 6.433716 TCTCTAGATAAGCAGGAGATGATGTG 59.566 42.308 0.00 0.00 0.00 3.21
3175 3637 6.766429 AGTAACTTATCGTCCTCCTTTTTGT 58.234 36.000 0.00 0.00 0.00 2.83
3207 3669 4.081476 TCACTGCAGCAGCTTAAATCTAGA 60.081 41.667 23.05 0.00 42.74 2.43
3294 3756 1.000896 CCTTGGCCTTCCCATTCGT 60.001 57.895 3.32 0.00 44.89 3.85
3491 3954 4.084287 ACCATGTCATTGATGCTCAGTTT 58.916 39.130 0.00 0.00 0.00 2.66
3493 3956 5.356190 ACCATGTCATTGATGCTCAGTTTAG 59.644 40.000 0.00 0.00 0.00 1.85
3674 4185 5.049129 CAGATCACACTTGAAGAAACCTTCC 60.049 44.000 0.00 0.00 39.36 3.46
3698 4209 1.113253 GTGCGATCGTAGATGACACG 58.887 55.000 17.81 0.00 45.12 4.49
3898 4423 3.543680 ACTGCTACTTTGTGACACTGT 57.456 42.857 7.20 6.00 0.00 3.55
3911 4436 4.202182 TGTGACACTGTACTGTACTTTCCC 60.202 45.833 17.98 6.44 0.00 3.97
3918 4443 7.015877 ACACTGTACTGTACTTTCCCAGATTTA 59.984 37.037 17.98 0.00 32.93 1.40
3920 4445 6.942976 TGTACTGTACTTTCCCAGATTTAGG 58.057 40.000 17.98 0.00 32.93 2.69
4112 4639 3.772025 TCACCACCCAAAACAGTCAAAAT 59.228 39.130 0.00 0.00 0.00 1.82
4126 4653 7.264373 ACAGTCAAAATACAAAGAAGAGGTG 57.736 36.000 0.00 0.00 0.00 4.00
4201 4728 4.266029 GGTGATTGTAAATTTGCATCAGCG 59.734 41.667 21.82 0.00 46.23 5.18
4655 5206 9.778993 CCAAAGATATACATTCAAGTTCAACTG 57.221 33.333 0.00 0.00 0.00 3.16
4670 5221 6.951971 AGTTCAACTGCAGAGGTATATTCTT 58.048 36.000 23.35 0.00 0.00 2.52
4718 5269 8.454106 AGTAAACACTGTTGATTCAATCATAGC 58.546 33.333 0.00 0.00 39.39 2.97
4719 5270 7.458409 AAACACTGTTGATTCAATCATAGCT 57.542 32.000 0.00 0.00 39.39 3.32
4720 5271 8.565896 AAACACTGTTGATTCAATCATAGCTA 57.434 30.769 0.00 0.00 39.39 3.32
4721 5272 7.545362 ACACTGTTGATTCAATCATAGCTAC 57.455 36.000 0.00 0.00 39.39 3.58
4722 5273 7.334090 ACACTGTTGATTCAATCATAGCTACT 58.666 34.615 0.00 0.00 39.39 2.57
5028 5610 7.608153 TCTGAACTCCGAATGTTTGAAGTATA 58.392 34.615 0.00 0.00 0.00 1.47
5029 5611 8.258007 TCTGAACTCCGAATGTTTGAAGTATAT 58.742 33.333 0.00 0.00 0.00 0.86
5030 5612 9.529325 CTGAACTCCGAATGTTTGAAGTATATA 57.471 33.333 0.00 0.00 0.00 0.86
5062 5644 4.101430 ACACAAAGATGGCCACTGAAAAAT 59.899 37.500 8.16 0.00 0.00 1.82
5135 5718 1.553248 TCCTCCGTCCCACAATGTAAG 59.447 52.381 0.00 0.00 0.00 2.34
5176 5759 8.885494 AAAATAGCTTGCAAAAATGTCTTACA 57.115 26.923 0.00 0.00 0.00 2.41
5201 5864 3.385111 GTGGGACAGAGGGAGTAGTTATG 59.615 52.174 0.00 0.00 41.80 1.90
5219 5882 9.199982 GTAGTTATGTGTGTAGTAGCAAAGAAA 57.800 33.333 0.00 0.00 0.00 2.52
5220 5883 8.848474 AGTTATGTGTGTAGTAGCAAAGAAAT 57.152 30.769 0.00 0.00 0.00 2.17
5221 5884 9.284968 AGTTATGTGTGTAGTAGCAAAGAAATT 57.715 29.630 0.00 0.00 0.00 1.82
5222 5885 9.543018 GTTATGTGTGTAGTAGCAAAGAAATTC 57.457 33.333 0.00 0.00 0.00 2.17
5405 6258 3.181490 CCAGTGAATGCTCATGGATGTTG 60.181 47.826 0.00 0.00 34.60 3.33
5427 6280 1.888512 GCTGTTCCAGGAAGCATTTGA 59.111 47.619 0.54 0.00 36.91 2.69
5448 6301 2.606826 GAGAAGTGGGTCGGGGGT 60.607 66.667 0.00 0.00 0.00 4.95
5452 6305 1.229723 AAGTGGGTCGGGGGTGTAT 60.230 57.895 0.00 0.00 0.00 2.29
5479 6332 4.702131 AGTTTGACAAGGTCAGATAATGGC 59.298 41.667 0.00 0.00 43.69 4.40
5521 6374 7.951191 GAGCATCATGTATCCTGAAAGGCCA 62.951 48.000 5.01 0.00 46.40 5.36
5672 6529 0.610232 AAAGCTTGATTCCGCTGCCT 60.610 50.000 0.00 0.00 36.45 4.75
5840 6714 3.701040 TGCTATTGCTTTGGAATTCTCCC 59.299 43.478 5.23 0.00 39.53 4.30
5858 6732 1.675641 CGAAACAGCCTCCCCTTGG 60.676 63.158 0.00 0.00 0.00 3.61
5887 6765 3.548014 CGACTTAACTTGGTGCCTGTTTG 60.548 47.826 5.78 3.76 0.00 2.93
5888 6766 3.361786 ACTTAACTTGGTGCCTGTTTGT 58.638 40.909 5.78 4.19 0.00 2.83
5890 6768 4.951094 ACTTAACTTGGTGCCTGTTTGTTA 59.049 37.500 5.78 0.00 0.00 2.41
5958 6847 1.970114 CTGGCTGGCTCAAGTGTGG 60.970 63.158 2.00 0.00 0.00 4.17
6004 6898 5.543405 AGAGGAGTAGGATTCTGATGAATGG 59.457 44.000 0.00 0.00 42.43 3.16
6035 6929 6.320171 GCTTGGAGCTAATATAATCGTCGTA 58.680 40.000 0.00 0.00 38.45 3.43
6072 6974 5.448768 GCGAGTAGTTGCTAGTTATGTCTGA 60.449 44.000 2.21 0.00 0.00 3.27
6074 6976 6.634837 CGAGTAGTTGCTAGTTATGTCTGATG 59.365 42.308 0.00 0.00 0.00 3.07
6075 6977 7.467403 CGAGTAGTTGCTAGTTATGTCTGATGA 60.467 40.741 0.00 0.00 0.00 2.92
6076 6978 8.067751 AGTAGTTGCTAGTTATGTCTGATGAA 57.932 34.615 0.00 0.00 0.00 2.57
6077 6979 8.700051 AGTAGTTGCTAGTTATGTCTGATGAAT 58.300 33.333 0.00 0.00 0.00 2.57
6079 6981 7.559486 AGTTGCTAGTTATGTCTGATGAATGA 58.441 34.615 0.00 0.00 0.00 2.57
6080 6982 8.043113 AGTTGCTAGTTATGTCTGATGAATGAA 58.957 33.333 0.00 0.00 0.00 2.57
6082 6984 6.763135 TGCTAGTTATGTCTGATGAATGAACC 59.237 38.462 0.00 0.00 0.00 3.62
6083 6985 6.763135 GCTAGTTATGTCTGATGAATGAACCA 59.237 38.462 0.00 0.00 0.00 3.67
6084 6986 7.280876 GCTAGTTATGTCTGATGAATGAACCAA 59.719 37.037 0.00 0.00 0.00 3.67
6085 6987 9.166173 CTAGTTATGTCTGATGAATGAACCAAA 57.834 33.333 0.00 0.00 0.00 3.28
6087 6989 7.667219 AGTTATGTCTGATGAATGAACCAAAGT 59.333 33.333 0.00 0.00 0.00 2.66
6088 6990 6.906157 ATGTCTGATGAATGAACCAAAGTT 57.094 33.333 0.00 0.00 39.54 2.66
6089 6991 6.713762 TGTCTGATGAATGAACCAAAGTTT 57.286 33.333 0.00 0.00 35.94 2.66
6090 6992 6.506147 TGTCTGATGAATGAACCAAAGTTTG 58.494 36.000 8.73 8.73 35.94 2.93
6092 6994 6.860023 GTCTGATGAATGAACCAAAGTTTGAG 59.140 38.462 17.33 9.48 35.94 3.02
6093 6995 6.772233 TCTGATGAATGAACCAAAGTTTGAGA 59.228 34.615 17.33 4.40 35.94 3.27
6094 6996 6.973843 TGATGAATGAACCAAAGTTTGAGAG 58.026 36.000 17.33 3.11 35.94 3.20
6098 7042 7.930217 TGAATGAACCAAAGTTTGAGAGTTAG 58.070 34.615 17.33 0.94 35.94 2.34
6102 7046 2.484264 CCAAAGTTTGAGAGTTAGGCGG 59.516 50.000 17.33 0.00 0.00 6.13
6172 7116 7.970061 TCATGAATTTGCAAACTGTAATCTAGC 59.030 33.333 15.41 0.00 0.00 3.42
6173 7117 7.213216 TGAATTTGCAAACTGTAATCTAGCA 57.787 32.000 15.41 0.00 0.00 3.49
6215 7242 6.567687 ACACCGATGAGATGAGATTACTAG 57.432 41.667 0.00 0.00 0.00 2.57
6221 7248 9.093970 CCGATGAGATGAGATTACTAGTACTAG 57.906 40.741 25.30 25.30 39.04 2.57
6275 7302 9.160496 TGCACTCATTTTATTTTGACACTTTTT 57.840 25.926 0.00 0.00 0.00 1.94
6332 7366 0.607217 TATTGTGCTGCTGCTGCTGT 60.607 50.000 27.67 15.21 39.81 4.40
6335 7369 3.973516 TGCTGCTGCTGCTGTTGC 61.974 61.111 27.67 16.48 39.81 4.17
6340 7374 0.249155 TGCTGCTGCTGTTGCTTTTC 60.249 50.000 17.00 0.00 40.48 2.29
6344 7383 2.538449 CTGCTGCTGTTGCTTTTCTTTG 59.462 45.455 0.00 0.00 40.48 2.77
6353 7392 6.479095 TGTTGCTTTTCTTTGTTCCTTTTG 57.521 33.333 0.00 0.00 0.00 2.44
6354 7393 5.994668 TGTTGCTTTTCTTTGTTCCTTTTGT 59.005 32.000 0.00 0.00 0.00 2.83
6355 7394 7.155328 TGTTGCTTTTCTTTGTTCCTTTTGTA 58.845 30.769 0.00 0.00 0.00 2.41
6356 7395 7.330700 TGTTGCTTTTCTTTGTTCCTTTTGTAG 59.669 33.333 0.00 0.00 0.00 2.74
6357 7396 7.164230 TGCTTTTCTTTGTTCCTTTTGTAGA 57.836 32.000 0.00 0.00 0.00 2.59
6358 7397 7.257722 TGCTTTTCTTTGTTCCTTTTGTAGAG 58.742 34.615 0.00 0.00 0.00 2.43
6359 7398 7.122055 TGCTTTTCTTTGTTCCTTTTGTAGAGA 59.878 33.333 0.00 0.00 0.00 3.10
6360 7399 7.973944 GCTTTTCTTTGTTCCTTTTGTAGAGAA 59.026 33.333 0.00 0.00 0.00 2.87
6361 7400 9.508567 CTTTTCTTTGTTCCTTTTGTAGAGAAG 57.491 33.333 0.00 0.00 0.00 2.85
6362 7401 8.801882 TTTCTTTGTTCCTTTTGTAGAGAAGA 57.198 30.769 0.00 0.00 0.00 2.87
6506 7980 3.559069 CCTGGCCATGATGTTGTATCTT 58.441 45.455 5.51 0.00 0.00 2.40
6507 7981 4.717877 CCTGGCCATGATGTTGTATCTTA 58.282 43.478 5.51 0.00 0.00 2.10
6515 7995 7.386299 GCCATGATGTTGTATCTTAAGACTAGG 59.614 40.741 7.48 0.84 0.00 3.02
6532 8012 4.023980 ACTAGGAGGTCGTTTCATCATCA 58.976 43.478 0.00 0.00 0.00 3.07
6533 8013 4.651503 ACTAGGAGGTCGTTTCATCATCAT 59.348 41.667 0.00 0.00 0.00 2.45
6534 8014 5.833667 ACTAGGAGGTCGTTTCATCATCATA 59.166 40.000 0.00 0.00 0.00 2.15
6535 8015 5.815233 AGGAGGTCGTTTCATCATCATAT 57.185 39.130 0.00 0.00 0.00 1.78
6583 8067 5.130311 ACAAAAAGGTAGAGGCCAACAAAAT 59.870 36.000 5.01 0.00 0.00 1.82
6612 8113 8.225603 ACAAAACAGATATGATGGATGTTACC 57.774 34.615 0.00 0.00 33.17 2.85
6613 8114 7.285401 ACAAAACAGATATGATGGATGTTACCC 59.715 37.037 0.00 0.00 33.17 3.69
6614 8115 6.770286 AACAGATATGATGGATGTTACCCT 57.230 37.500 0.00 0.00 32.58 4.34
6615 8116 6.365970 ACAGATATGATGGATGTTACCCTC 57.634 41.667 0.00 0.00 0.00 4.30
6616 8117 5.249393 ACAGATATGATGGATGTTACCCTCC 59.751 44.000 0.00 0.00 0.00 4.30
6617 8118 4.785376 AGATATGATGGATGTTACCCTCCC 59.215 45.833 0.00 0.00 0.00 4.30
6618 8119 2.587060 TGATGGATGTTACCCTCCCT 57.413 50.000 0.00 0.00 0.00 4.20
6619 8120 3.717507 TGATGGATGTTACCCTCCCTA 57.282 47.619 0.00 0.00 0.00 3.53
6620 8121 4.228237 TGATGGATGTTACCCTCCCTAT 57.772 45.455 0.00 0.00 0.00 2.57
6621 8122 5.363124 TGATGGATGTTACCCTCCCTATA 57.637 43.478 0.00 0.00 0.00 1.31
6622 8123 5.733000 TGATGGATGTTACCCTCCCTATAA 58.267 41.667 0.00 0.00 0.00 0.98
6623 8124 5.546499 TGATGGATGTTACCCTCCCTATAAC 59.454 44.000 0.00 0.00 0.00 1.89
6624 8125 5.166013 TGGATGTTACCCTCCCTATAACT 57.834 43.478 0.00 0.00 31.42 2.24
6625 8126 6.297830 TGGATGTTACCCTCCCTATAACTA 57.702 41.667 0.00 0.00 31.42 2.24
6669 8170 6.089249 ACAAAATTAGTGCAAAGGAGAAGG 57.911 37.500 0.00 0.00 0.00 3.46
6675 8176 2.235898 AGTGCAAAGGAGAAGGAGCTAG 59.764 50.000 0.00 0.00 0.00 3.42
6676 8177 2.234908 GTGCAAAGGAGAAGGAGCTAGA 59.765 50.000 0.00 0.00 0.00 2.43
6677 8178 3.110705 TGCAAAGGAGAAGGAGCTAGAT 58.889 45.455 0.00 0.00 0.00 1.98
6678 8179 3.133721 TGCAAAGGAGAAGGAGCTAGATC 59.866 47.826 0.00 0.00 0.00 2.75
6706 8207 3.068024 TGATGAAGCCAAGTTTGTTCCAC 59.932 43.478 0.00 0.00 0.00 4.02
6737 8238 5.298777 AGAAATGCTGCTCATTATCAACTCC 59.701 40.000 0.00 0.00 44.23 3.85
6741 8242 4.057432 GCTGCTCATTATCAACTCCTCTC 58.943 47.826 0.00 0.00 0.00 3.20
6761 8262 5.311265 TCTCATGGTGATATGCTGGAAATC 58.689 41.667 0.00 0.00 0.00 2.17
6763 8264 5.447757 TCATGGTGATATGCTGGAAATCAA 58.552 37.500 0.00 0.00 31.77 2.57
6764 8265 5.300034 TCATGGTGATATGCTGGAAATCAAC 59.700 40.000 0.00 0.00 37.75 3.18
6765 8266 4.858850 TGGTGATATGCTGGAAATCAACT 58.141 39.130 1.75 0.00 38.03 3.16
6766 8267 4.883585 TGGTGATATGCTGGAAATCAACTC 59.116 41.667 1.75 0.00 38.03 3.01
6772 8274 1.936547 GCTGGAAATCAACTCCTAGCG 59.063 52.381 0.00 0.00 33.77 4.26
6794 8296 1.776034 GATGCCGGATTCCTCGCAAC 61.776 60.000 5.05 10.88 31.94 4.17
6799 8301 1.079405 GGATTCCTCGCAACGTGGA 60.079 57.895 6.68 6.68 45.65 4.02
6829 8332 3.002246 GGATTTGCGATTCGACATGCTTA 59.998 43.478 10.88 0.00 0.00 3.09
6836 8339 3.804325 CGATTCGACATGCTTATTCAGGT 59.196 43.478 0.00 0.00 33.28 4.00
6837 8340 4.318333 CGATTCGACATGCTTATTCAGGTG 60.318 45.833 0.00 0.00 30.48 4.00
6838 8341 3.610040 TCGACATGCTTATTCAGGTGT 57.390 42.857 0.00 0.00 30.48 4.16
6839 8342 3.937814 TCGACATGCTTATTCAGGTGTT 58.062 40.909 0.00 0.00 30.48 3.32
6840 8343 3.932710 TCGACATGCTTATTCAGGTGTTC 59.067 43.478 0.00 0.00 30.48 3.18
6846 8349 6.714810 ACATGCTTATTCAGGTGTTCTGTTTA 59.285 34.615 0.00 0.00 43.76 2.01
6847 8350 7.230510 ACATGCTTATTCAGGTGTTCTGTTTAA 59.769 33.333 0.00 0.00 43.76 1.52
6848 8351 7.575414 TGCTTATTCAGGTGTTCTGTTTAAA 57.425 32.000 0.00 0.00 43.76 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.00 0.00 3.24
148 149 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
231 238 4.716977 GTCGAGGGTGGAGGGGGT 62.717 72.222 0.00 0.00 0.00 4.95
269 288 3.239253 GGTCGTGGTCCTGGTGGT 61.239 66.667 0.00 0.00 34.23 4.16
276 295 3.302347 CTGCTCCTGGTCGTGGTCC 62.302 68.421 0.00 0.00 0.00 4.46
345 373 1.303317 CGTGGGGGTTTGAGGAAGG 60.303 63.158 0.00 0.00 0.00 3.46
346 374 1.971695 GCGTGGGGGTTTGAGGAAG 60.972 63.158 0.00 0.00 0.00 3.46
347 375 2.114411 GCGTGGGGGTTTGAGGAA 59.886 61.111 0.00 0.00 0.00 3.36
409 461 1.127567 TCCTCCTCCTGGTGGTGTTG 61.128 60.000 14.11 1.58 44.94 3.33
422 474 2.710826 GGCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
423 475 2.123033 GGCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
424 476 2.123033 GGGCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 34.39 3.71
442 494 1.675310 CTTCATCCAACAGGCCGCA 60.675 57.895 0.00 0.00 0.00 5.69
444 496 2.409870 GGCTTCATCCAACAGGCCG 61.410 63.158 0.00 0.00 0.00 6.13
451 503 1.198094 TGGAGGTCGGCTTCATCCAA 61.198 55.000 0.26 0.00 41.69 3.53
464 516 3.906980 CCTGGTGAAGGTGGAGGT 58.093 61.111 0.00 0.00 41.74 3.85
512 585 2.081787 TTGAGGCCCTTGGTGGTGA 61.082 57.895 0.00 0.00 0.00 4.02
513 586 1.903404 GTTGAGGCCCTTGGTGGTG 60.903 63.158 0.00 0.00 0.00 4.17
514 587 2.520968 GTTGAGGCCCTTGGTGGT 59.479 61.111 0.00 0.00 0.00 4.16
515 588 2.672996 CGTTGAGGCCCTTGGTGG 60.673 66.667 0.00 0.00 0.00 4.61
516 589 1.966451 GACGTTGAGGCCCTTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
517 590 2.430367 GACGTTGAGGCCCTTGGT 59.570 61.111 0.00 0.00 0.00 3.67
528 601 0.813610 TGTGTTGCTCCAGGACGTTG 60.814 55.000 0.00 0.00 0.00 4.10
532 605 0.890996 CCCTTGTGTTGCTCCAGGAC 60.891 60.000 0.00 0.00 0.00 3.85
552 625 3.883549 GGGAGGGGCAGATCCAGC 61.884 72.222 4.55 0.00 37.33 4.85
553 626 3.174265 GGGGAGGGGCAGATCCAG 61.174 72.222 4.55 0.00 37.33 3.86
561 634 2.997315 GCTTGTTTGGGGAGGGGC 60.997 66.667 0.00 0.00 0.00 5.80
564 637 0.991920 TAGGAGCTTGTTTGGGGAGG 59.008 55.000 0.00 0.00 0.00 4.30
578 651 2.171237 TGGATGGACAGCAATGTAGGAG 59.829 50.000 0.00 0.00 0.00 3.69
580 653 2.569059 CTGGATGGACAGCAATGTAGG 58.431 52.381 0.00 0.00 0.00 3.18
582 655 2.195727 TCCTGGATGGACAGCAATGTA 58.804 47.619 0.00 0.00 40.56 2.29
583 656 0.994247 TCCTGGATGGACAGCAATGT 59.006 50.000 0.00 0.00 40.56 2.71
584 657 3.888424 TCCTGGATGGACAGCAATG 57.112 52.632 0.00 0.00 40.56 2.82
592 665 1.825341 CAGCATCGTCCTGGATGGA 59.175 57.895 15.67 9.23 43.19 3.41
593 666 1.890979 GCAGCATCGTCCTGGATGG 60.891 63.158 15.67 3.84 43.19 3.51
594 667 1.145598 AGCAGCATCGTCCTGGATG 59.854 57.895 9.73 9.73 45.23 3.51
595 668 1.145598 CAGCAGCATCGTCCTGGAT 59.854 57.895 0.00 0.00 0.00 3.41
596 669 2.580815 CAGCAGCATCGTCCTGGA 59.419 61.111 0.00 0.00 0.00 3.86
597 670 3.200593 GCAGCAGCATCGTCCTGG 61.201 66.667 0.00 0.00 41.58 4.45
598 671 2.125229 AGCAGCAGCATCGTCCTG 60.125 61.111 3.17 0.00 45.49 3.86
599 672 2.125229 CAGCAGCAGCATCGTCCT 60.125 61.111 3.17 0.00 45.49 3.85
600 673 3.873883 GCAGCAGCAGCATCGTCC 61.874 66.667 4.63 0.00 45.49 4.79
601 674 2.818714 AGCAGCAGCAGCATCGTC 60.819 61.111 12.92 0.00 45.49 4.20
660 742 5.798132 ACTAGCTTGAACTGATGTTGATCA 58.202 37.500 1.04 0.00 36.39 2.92
678 760 1.123928 AGGTGGGTGCATCTACTAGC 58.876 55.000 13.62 0.00 0.00 3.42
679 761 1.202580 GCAGGTGGGTGCATCTACTAG 60.203 57.143 13.62 7.31 43.41 2.57
716 798 2.022195 CTTGTTCCTGGGCATCATGAG 58.978 52.381 0.09 0.00 0.00 2.90
718 800 2.133281 TCTTGTTCCTGGGCATCATG 57.867 50.000 0.00 0.00 0.00 3.07
721 803 2.019984 GTCATCTTGTTCCTGGGCATC 58.980 52.381 0.00 0.00 0.00 3.91
722 804 1.637553 AGTCATCTTGTTCCTGGGCAT 59.362 47.619 0.00 0.00 0.00 4.40
724 806 1.815003 CAAGTCATCTTGTTCCTGGGC 59.185 52.381 0.00 0.00 44.09 5.36
736 818 2.020131 CATGAGCGGGCAAGTCATC 58.980 57.895 0.00 0.00 0.00 2.92
811 893 2.029844 GACCTTCCACAGCGACAGC 61.030 63.158 0.00 0.00 45.58 4.40
812 894 0.668706 CTGACCTTCCACAGCGACAG 60.669 60.000 0.00 0.00 0.00 3.51
813 895 1.367471 CTGACCTTCCACAGCGACA 59.633 57.895 0.00 0.00 0.00 4.35
814 896 1.374758 CCTGACCTTCCACAGCGAC 60.375 63.158 0.00 0.00 33.40 5.19
815 897 1.533033 TCCTGACCTTCCACAGCGA 60.533 57.895 0.00 0.00 33.40 4.93
816 898 1.079543 CTCCTGACCTTCCACAGCG 60.080 63.158 0.00 0.00 33.40 5.18
843 937 2.331451 GCAACGACACCACCTTGC 59.669 61.111 0.00 0.00 32.80 4.01
925 1019 2.419851 CCAGTGGCTTCTTCTCCTGATC 60.420 54.545 0.00 0.00 0.00 2.92
926 1020 1.558756 CCAGTGGCTTCTTCTCCTGAT 59.441 52.381 0.00 0.00 0.00 2.90
927 1021 0.979665 CCAGTGGCTTCTTCTCCTGA 59.020 55.000 0.00 0.00 0.00 3.86
969 1063 4.327982 TGTCAGTTCTTCACAAGAGGAG 57.672 45.455 0.00 0.00 39.03 3.69
987 1081 7.095940 CCATCATCTTTCATGTTTGTTGTTGTC 60.096 37.037 0.00 0.00 0.00 3.18
1023 1133 0.251354 GCTCCACTGCCTCTTGATCA 59.749 55.000 0.00 0.00 0.00 2.92
1061 1171 1.274703 ATCCATGGGTGCGACCTCTT 61.275 55.000 13.02 0.00 38.64 2.85
1067 1177 1.526686 GCATCATCCATGGGTGCGA 60.527 57.895 21.00 4.25 33.00 5.10
1277 1390 1.135094 AGTTGATCCCGGCTGATGAT 58.865 50.000 0.00 0.00 0.00 2.45
1398 1733 1.890876 TGGTTGTTCCCAAGTCATCG 58.109 50.000 0.00 0.00 34.77 3.84
1484 1819 9.392259 CATTATCATCATCTATGGTACTTGCAT 57.608 33.333 0.00 0.00 36.15 3.96
1485 1820 7.335171 GCATTATCATCATCTATGGTACTTGCA 59.665 37.037 0.00 0.00 38.87 4.08
1486 1821 7.551974 AGCATTATCATCATCTATGGTACTTGC 59.448 37.037 0.00 0.00 39.09 4.01
1523 1858 1.297689 CCTAGCAGCAGCACCTCAA 59.702 57.895 3.17 0.00 45.49 3.02
1574 1909 1.094073 ATCCTCGACAGCAGCAATGC 61.094 55.000 0.00 0.00 0.00 3.56
1599 1934 2.416431 GGCACATTGCTCCACATTCTTC 60.416 50.000 0.00 0.00 44.28 2.87
1618 1953 1.071699 TCCCAGGTCATAATAAGCGGC 59.928 52.381 0.00 0.00 0.00 6.53
1621 1956 4.338400 GGTTGTTCCCAGGTCATAATAAGC 59.662 45.833 0.00 0.00 0.00 3.09
1695 2094 4.331443 TCATCCATGGTTAAATCGACAACG 59.669 41.667 12.58 0.00 41.26 4.10
1732 2131 2.590821 ACCTTGCTGCTTGTGATCTTT 58.409 42.857 0.00 0.00 0.00 2.52
1829 2234 5.815740 TCCTTTTCTTTGACAGTGTACTCAC 59.184 40.000 0.00 0.00 44.15 3.51
1876 2281 2.754946 TCCATGTACTTTGGGTCGAC 57.245 50.000 7.13 7.13 34.85 4.20
1878 2283 3.543680 AGATCCATGTACTTTGGGTCG 57.456 47.619 17.62 0.00 46.96 4.79
1886 2291 1.134401 CCGTGGCAAGATCCATGTACT 60.134 52.381 0.76 0.00 40.66 2.73
1980 2385 1.767759 ATTGCACCACTGCCTTATCC 58.232 50.000 0.00 0.00 43.51 2.59
2007 2412 7.774625 TCATCCTTGATTGTTACTATTGCATCA 59.225 33.333 0.00 0.00 0.00 3.07
2058 2463 1.444933 TGACACCTTGATTCCCCACT 58.555 50.000 0.00 0.00 0.00 4.00
2115 2520 2.180946 TCACATAGCCATGTCCCTCT 57.819 50.000 0.00 0.00 43.73 3.69
2220 2625 2.843701 CCTGCTATCTGTTCATCACCC 58.156 52.381 0.00 0.00 0.00 4.61
2415 2820 1.212935 CCCCAATCTCTGGTACCTTGG 59.787 57.143 18.66 18.66 44.76 3.61
2425 2830 6.906901 TCCTTGTTAACTATACCCCAATCTCT 59.093 38.462 7.22 0.00 0.00 3.10
2427 2832 6.906901 TCTCCTTGTTAACTATACCCCAATCT 59.093 38.462 7.22 0.00 0.00 2.40
2444 2849 2.553247 GGCAGCTTAACCTTCTCCTTGT 60.553 50.000 0.00 0.00 0.00 3.16
2446 2851 1.988846 AGGCAGCTTAACCTTCTCCTT 59.011 47.619 0.00 0.00 29.74 3.36
2482 2887 0.541392 TGATAAGCTGCCGTGTCCAT 59.459 50.000 0.00 0.00 0.00 3.41
2483 2888 0.323302 TTGATAAGCTGCCGTGTCCA 59.677 50.000 0.00 0.00 0.00 4.02
2484 2889 1.009829 CTTGATAAGCTGCCGTGTCC 58.990 55.000 0.00 0.00 0.00 4.02
2485 2890 1.009829 CCTTGATAAGCTGCCGTGTC 58.990 55.000 0.00 0.00 0.00 3.67
2486 2891 0.324943 ACCTTGATAAGCTGCCGTGT 59.675 50.000 0.00 0.00 0.00 4.49
2487 2892 1.933853 GTACCTTGATAAGCTGCCGTG 59.066 52.381 0.00 0.00 0.00 4.94
2488 2893 1.134491 GGTACCTTGATAAGCTGCCGT 60.134 52.381 4.06 0.00 0.00 5.68
2489 2894 1.583054 GGTACCTTGATAAGCTGCCG 58.417 55.000 4.06 0.00 0.00 5.69
2490 2895 1.583054 CGGTACCTTGATAAGCTGCC 58.417 55.000 10.90 0.00 0.00 4.85
2491 2896 1.138266 TCCGGTACCTTGATAAGCTGC 59.862 52.381 10.90 0.00 0.00 5.25
2492 2897 2.693591 TCTCCGGTACCTTGATAAGCTG 59.306 50.000 10.90 0.00 0.00 4.24
2493 2898 3.028094 TCTCCGGTACCTTGATAAGCT 57.972 47.619 10.90 0.00 0.00 3.74
2494 2899 4.058817 CAATCTCCGGTACCTTGATAAGC 58.941 47.826 10.90 0.00 0.00 3.09
2495 2900 4.503296 CCCAATCTCCGGTACCTTGATAAG 60.503 50.000 10.90 7.06 0.00 1.73
2496 2901 3.389983 CCCAATCTCCGGTACCTTGATAA 59.610 47.826 10.90 0.00 0.00 1.75
2497 2902 2.969950 CCCAATCTCCGGTACCTTGATA 59.030 50.000 10.90 0.00 0.00 2.15
2498 2903 1.768870 CCCAATCTCCGGTACCTTGAT 59.231 52.381 10.90 7.74 0.00 2.57
2499 2904 1.200519 CCCAATCTCCGGTACCTTGA 58.799 55.000 10.90 5.59 0.00 3.02
2500 2905 0.180406 CCCCAATCTCCGGTACCTTG 59.820 60.000 10.90 7.08 0.00 3.61
2501 2906 0.253020 ACCCCAATCTCCGGTACCTT 60.253 55.000 10.90 0.00 0.00 3.50
2502 2907 0.638292 TACCCCAATCTCCGGTACCT 59.362 55.000 10.90 0.00 0.00 3.08
2503 2908 1.725803 ATACCCCAATCTCCGGTACC 58.274 55.000 0.16 0.16 35.02 3.34
2504 2909 3.504375 ACTATACCCCAATCTCCGGTAC 58.496 50.000 0.00 0.00 35.02 3.34
2505 2910 3.909427 ACTATACCCCAATCTCCGGTA 57.091 47.619 0.00 0.00 36.60 4.02
2506 2911 2.789323 ACTATACCCCAATCTCCGGT 57.211 50.000 0.00 0.00 0.00 5.28
2507 2912 4.345837 TGTTAACTATACCCCAATCTCCGG 59.654 45.833 7.22 0.00 0.00 5.14
2508 2913 5.540400 TGTTAACTATACCCCAATCTCCG 57.460 43.478 7.22 0.00 0.00 4.63
2509 2914 6.100714 TCCTTGTTAACTATACCCCAATCTCC 59.899 42.308 7.22 0.00 0.00 3.71
2510 2915 7.070821 TCTCCTTGTTAACTATACCCCAATCTC 59.929 40.741 7.22 0.00 0.00 2.75
2511 2916 6.906901 TCTCCTTGTTAACTATACCCCAATCT 59.093 38.462 7.22 0.00 0.00 2.40
2512 2917 7.133133 TCTCCTTGTTAACTATACCCCAATC 57.867 40.000 7.22 0.00 0.00 2.67
2513 2918 7.366551 CCTTCTCCTTGTTAACTATACCCCAAT 60.367 40.741 7.22 0.00 0.00 3.16
2514 2919 6.069847 CCTTCTCCTTGTTAACTATACCCCAA 60.070 42.308 7.22 0.00 0.00 4.12
2515 2920 5.427481 CCTTCTCCTTGTTAACTATACCCCA 59.573 44.000 7.22 0.00 0.00 4.96
2516 2921 5.427806 ACCTTCTCCTTGTTAACTATACCCC 59.572 44.000 7.22 0.00 0.00 4.95
2517 2922 6.346896 CACCTTCTCCTTGTTAACTATACCC 58.653 44.000 7.22 0.00 0.00 3.69
2518 2923 5.816258 GCACCTTCTCCTTGTTAACTATACC 59.184 44.000 7.22 0.00 0.00 2.73
2519 2924 6.535508 CAGCACCTTCTCCTTGTTAACTATAC 59.464 42.308 7.22 0.00 0.00 1.47
2520 2925 6.640518 CAGCACCTTCTCCTTGTTAACTATA 58.359 40.000 7.22 0.00 0.00 1.31
2521 2926 5.491982 CAGCACCTTCTCCTTGTTAACTAT 58.508 41.667 7.22 0.00 0.00 2.12
2522 2927 4.802918 GCAGCACCTTCTCCTTGTTAACTA 60.803 45.833 7.22 0.00 0.00 2.24
2523 2928 3.744660 CAGCACCTTCTCCTTGTTAACT 58.255 45.455 7.22 0.00 0.00 2.24
2524 2929 2.226674 GCAGCACCTTCTCCTTGTTAAC 59.773 50.000 0.00 0.00 0.00 2.01
2525 2930 2.504367 GCAGCACCTTCTCCTTGTTAA 58.496 47.619 0.00 0.00 0.00 2.01
2526 2931 1.271379 GGCAGCACCTTCTCCTTGTTA 60.271 52.381 0.00 0.00 34.51 2.41
2527 2932 0.538287 GGCAGCACCTTCTCCTTGTT 60.538 55.000 0.00 0.00 34.51 2.83
2528 2933 1.073897 GGCAGCACCTTCTCCTTGT 59.926 57.895 0.00 0.00 34.51 3.16
2529 2934 3.993535 GGCAGCACCTTCTCCTTG 58.006 61.111 0.00 0.00 34.51 3.61
2538 2943 0.534652 GATCATCCTCAGGCAGCACC 60.535 60.000 0.00 0.00 39.61 5.01
2539 2944 0.879400 CGATCATCCTCAGGCAGCAC 60.879 60.000 0.00 0.00 0.00 4.40
2540 2945 1.332889 ACGATCATCCTCAGGCAGCA 61.333 55.000 0.00 0.00 0.00 4.41
2541 2946 0.879400 CACGATCATCCTCAGGCAGC 60.879 60.000 0.00 0.00 0.00 5.25
2542 2947 0.879400 GCACGATCATCCTCAGGCAG 60.879 60.000 0.00 0.00 0.00 4.85
2543 2948 1.144716 GCACGATCATCCTCAGGCA 59.855 57.895 0.00 0.00 0.00 4.75
2544 2949 0.676184 TAGCACGATCATCCTCAGGC 59.324 55.000 0.00 0.00 0.00 4.85
2545 2950 2.353505 CCATAGCACGATCATCCTCAGG 60.354 54.545 0.00 0.00 0.00 3.86
2546 2951 2.560105 TCCATAGCACGATCATCCTCAG 59.440 50.000 0.00 0.00 0.00 3.35
2547 2952 2.297315 GTCCATAGCACGATCATCCTCA 59.703 50.000 0.00 0.00 0.00 3.86
2548 2953 2.297315 TGTCCATAGCACGATCATCCTC 59.703 50.000 0.00 0.00 0.00 3.71
2549 2954 2.319844 TGTCCATAGCACGATCATCCT 58.680 47.619 0.00 0.00 0.00 3.24
2550 2955 2.820059 TGTCCATAGCACGATCATCC 57.180 50.000 0.00 0.00 0.00 3.51
2551 2956 2.998670 CCATGTCCATAGCACGATCATC 59.001 50.000 0.00 0.00 0.00 2.92
2552 2957 2.873245 GCCATGTCCATAGCACGATCAT 60.873 50.000 0.00 0.00 0.00 2.45
2553 2958 1.541015 GCCATGTCCATAGCACGATCA 60.541 52.381 0.00 0.00 0.00 2.92
2554 2959 1.151668 GCCATGTCCATAGCACGATC 58.848 55.000 0.00 0.00 0.00 3.69
2555 2960 0.469494 TGCCATGTCCATAGCACGAT 59.531 50.000 0.00 0.00 30.78 3.73
2556 2961 0.179076 CTGCCATGTCCATAGCACGA 60.179 55.000 0.00 0.00 32.33 4.35
2557 2962 1.779025 GCTGCCATGTCCATAGCACG 61.779 60.000 0.00 0.00 32.33 5.34
2558 2963 0.465097 AGCTGCCATGTCCATAGCAC 60.465 55.000 0.00 0.00 36.87 4.40
2559 2964 0.256752 AAGCTGCCATGTCCATAGCA 59.743 50.000 0.00 0.67 36.87 3.49
2560 2965 2.260844 TAAGCTGCCATGTCCATAGC 57.739 50.000 0.00 0.00 34.71 2.97
2561 2966 4.011966 TGATAAGCTGCCATGTCCATAG 57.988 45.455 0.00 0.00 0.00 2.23
2562 2967 4.392047 CTTGATAAGCTGCCATGTCCATA 58.608 43.478 0.00 0.00 0.00 2.74
2570 2975 1.134521 CGGTACCTTGATAAGCTGCCA 60.135 52.381 10.90 0.00 0.00 4.92
2624 3029 3.243873 TGGATATCTTCTAGCAGGCAACG 60.244 47.826 2.05 0.00 46.39 4.10
2649 3054 3.305403 GGCAGTTAAGTTTTCTGGGCTTC 60.305 47.826 8.39 0.00 0.00 3.86
2901 3307 6.270000 TGAAATATAGATCCCAGTACCACCTG 59.730 42.308 0.00 0.00 0.00 4.00
2906 3312 6.166982 GCACTGAAATATAGATCCCAGTACC 58.833 44.000 0.00 0.00 34.01 3.34
2927 3386 1.135575 GCAGGTGTGAGCTTAATGCAC 60.136 52.381 0.00 0.00 45.94 4.57
3033 3495 5.479724 CCACATCATCTCCTGCTTATCTAGA 59.520 44.000 0.00 0.00 0.00 2.43
3056 3518 8.082334 TCAGCACATAAAACTTTTAAAATGCC 57.918 30.769 12.77 0.18 0.00 4.40
3162 3624 5.163561 TGACAACATCAACAAAAAGGAGGAC 60.164 40.000 0.00 0.00 33.02 3.85
3175 3637 1.605232 CTGCTGCAGTGACAACATCAA 59.395 47.619 21.21 0.00 39.72 2.57
3207 3669 2.551721 GGGACGCCATGATTCATCTGAT 60.552 50.000 0.00 0.00 0.00 2.90
3294 3756 7.508687 TGAAAAGATAGCATAGGCATACTTCA 58.491 34.615 0.67 0.12 44.61 3.02
3349 3811 6.648192 ACCATTCAGTTTCAACATTTTCCAA 58.352 32.000 0.00 0.00 0.00 3.53
3698 4209 6.588373 GGTCAGAAGACTTCTTTGAGTATGAC 59.412 42.308 15.24 15.74 44.36 3.06
3898 4423 5.724854 AGCCTAAATCTGGGAAAGTACAGTA 59.275 40.000 0.00 0.00 36.17 2.74
3911 4436 2.012673 GCACAGACCAGCCTAAATCTG 58.987 52.381 0.00 0.00 43.47 2.90
4112 4639 5.105473 CGGGATAGTTCACCTCTTCTTTGTA 60.105 44.000 0.00 0.00 0.00 2.41
4126 4653 0.676736 CAGGCCTCTCGGGATAGTTC 59.323 60.000 0.00 0.00 37.23 3.01
4201 4728 1.904287 TTGGGTGGTGATAGTTGCAC 58.096 50.000 0.00 0.00 35.56 4.57
4655 5206 9.593134 CCACTGATAATAAGAATATACCTCTGC 57.407 37.037 0.00 0.00 0.00 4.26
4670 5221 6.873997 ACTTGAACATCGACCACTGATAATA 58.126 36.000 0.00 0.00 0.00 0.98
4717 5268 5.412904 AGGAACAATTGCAAACTAGAGTAGC 59.587 40.000 1.71 0.00 0.00 3.58
4718 5269 7.440523 AAGGAACAATTGCAAACTAGAGTAG 57.559 36.000 1.71 0.00 0.00 2.57
4719 5270 7.817418 AAAGGAACAATTGCAAACTAGAGTA 57.183 32.000 1.71 0.00 0.00 2.59
4720 5271 6.715347 AAAGGAACAATTGCAAACTAGAGT 57.285 33.333 1.71 0.00 0.00 3.24
4721 5272 7.922811 AGAAAAAGGAACAATTGCAAACTAGAG 59.077 33.333 1.71 0.00 0.00 2.43
4722 5273 7.781056 AGAAAAAGGAACAATTGCAAACTAGA 58.219 30.769 1.71 0.00 0.00 2.43
5028 5610 4.158394 GCCATCTTTGTGTTGTGTGGATAT 59.842 41.667 0.00 0.00 0.00 1.63
5029 5611 3.505680 GCCATCTTTGTGTTGTGTGGATA 59.494 43.478 0.00 0.00 0.00 2.59
5030 5612 2.297033 GCCATCTTTGTGTTGTGTGGAT 59.703 45.455 0.00 0.00 0.00 3.41
5031 5613 1.680735 GCCATCTTTGTGTTGTGTGGA 59.319 47.619 0.00 0.00 0.00 4.02
5062 5644 5.187772 GCACTCCATAGTCCATACCATCATA 59.812 44.000 0.00 0.00 31.97 2.15
5176 5759 2.225650 ACTACTCCCTCTGTCCCACAAT 60.226 50.000 0.00 0.00 0.00 2.71
5201 5864 9.516314 AAAAAGAATTTCTTTGCTACTACACAC 57.484 29.630 21.80 0.00 45.19 3.82
5328 5995 8.415553 CAATTGGGTGACATGACATACATATTT 58.584 33.333 0.00 0.00 37.46 1.40
5329 5996 7.779326 TCAATTGGGTGACATGACATACATATT 59.221 33.333 5.42 3.94 37.46 1.28
5330 5997 7.289310 TCAATTGGGTGACATGACATACATAT 58.711 34.615 5.42 0.00 37.46 1.78
5331 5998 6.657875 TCAATTGGGTGACATGACATACATA 58.342 36.000 5.42 0.00 37.46 2.29
5332 5999 5.508567 TCAATTGGGTGACATGACATACAT 58.491 37.500 5.42 0.00 40.17 2.29
5333 6000 4.916183 TCAATTGGGTGACATGACATACA 58.084 39.130 5.42 0.00 0.00 2.29
5334 6001 5.895636 TTCAATTGGGTGACATGACATAC 57.104 39.130 5.42 0.00 0.00 2.39
5427 6280 1.497161 CCCCGACCCACTTCTCTTAT 58.503 55.000 0.00 0.00 0.00 1.73
5448 6301 7.239763 TCTGACCTTGTCAAACTATCATACA 57.760 36.000 0.00 0.00 42.26 2.29
5452 6305 7.770433 CCATTATCTGACCTTGTCAAACTATCA 59.230 37.037 0.00 0.00 42.26 2.15
5479 6332 2.064762 CTCTCTTCTTGTTGCTCCACG 58.935 52.381 0.00 0.00 0.00 4.94
5521 6374 0.683412 GGTTACACTCGGGTTCACCT 59.317 55.000 0.00 0.00 36.97 4.00
5648 6505 3.496155 CAGCGGAATCAAGCTTTTTCTC 58.504 45.455 15.15 9.58 42.52 2.87
5659 6516 2.779755 TCTAAAAGGCAGCGGAATCA 57.220 45.000 0.00 0.00 0.00 2.57
5672 6529 9.181061 ACACATCATCATCAACATCATCTAAAA 57.819 29.630 0.00 0.00 0.00 1.52
5789 6648 4.623932 TCAGCAACATCACTACCTTTCT 57.376 40.909 0.00 0.00 0.00 2.52
5840 6714 1.675641 CCAAGGGGAGGCTGTTTCG 60.676 63.158 0.00 0.00 35.59 3.46
5858 6732 1.495951 CAAGTTAAGTCGGCCACGC 59.504 57.895 2.24 0.00 40.69 5.34
5887 6765 6.200665 TCAAGACAATGCTGCAAAACAATAAC 59.799 34.615 6.36 0.00 0.00 1.89
5888 6766 6.279123 TCAAGACAATGCTGCAAAACAATAA 58.721 32.000 6.36 0.00 0.00 1.40
5890 6768 4.695396 TCAAGACAATGCTGCAAAACAAT 58.305 34.783 6.36 0.00 0.00 2.71
6035 6929 2.633481 ACTACTCGCTCCCAGAAAAACT 59.367 45.455 0.00 0.00 0.00 2.66
6072 6974 6.966534 ACTCTCAAACTTTGGTTCATTCAT 57.033 33.333 1.62 0.00 34.14 2.57
6074 6976 7.363431 CCTAACTCTCAAACTTTGGTTCATTC 58.637 38.462 1.62 0.00 34.14 2.67
6075 6977 6.239036 GCCTAACTCTCAAACTTTGGTTCATT 60.239 38.462 1.62 0.00 34.14 2.57
6076 6978 5.241728 GCCTAACTCTCAAACTTTGGTTCAT 59.758 40.000 1.62 0.00 34.14 2.57
6077 6979 4.578928 GCCTAACTCTCAAACTTTGGTTCA 59.421 41.667 1.62 0.00 34.14 3.18
6079 6981 3.564225 CGCCTAACTCTCAAACTTTGGTT 59.436 43.478 1.62 1.71 37.24 3.67
6080 6982 3.139077 CGCCTAACTCTCAAACTTTGGT 58.861 45.455 1.62 0.00 0.00 3.67
6082 6984 3.139077 ACCGCCTAACTCTCAAACTTTG 58.861 45.455 0.00 0.00 0.00 2.77
6083 6985 3.487120 ACCGCCTAACTCTCAAACTTT 57.513 42.857 0.00 0.00 0.00 2.66
6084 6986 3.139077 CAACCGCCTAACTCTCAAACTT 58.861 45.455 0.00 0.00 0.00 2.66
6085 6987 2.767505 CAACCGCCTAACTCTCAAACT 58.232 47.619 0.00 0.00 0.00 2.66
6087 6989 1.202710 TGCAACCGCCTAACTCTCAAA 60.203 47.619 0.00 0.00 37.32 2.69
6088 6990 0.394938 TGCAACCGCCTAACTCTCAA 59.605 50.000 0.00 0.00 37.32 3.02
6089 6991 0.394938 TTGCAACCGCCTAACTCTCA 59.605 50.000 0.00 0.00 37.32 3.27
6090 6992 0.796927 GTTGCAACCGCCTAACTCTC 59.203 55.000 19.15 0.00 37.32 3.20
6092 6994 1.165270 ATGTTGCAACCGCCTAACTC 58.835 50.000 26.14 0.00 37.32 3.01
6093 6995 2.081462 GTATGTTGCAACCGCCTAACT 58.919 47.619 26.14 4.12 37.32 2.24
6094 6996 2.081462 AGTATGTTGCAACCGCCTAAC 58.919 47.619 26.14 14.17 37.32 2.34
6098 7042 2.018542 TAGAGTATGTTGCAACCGCC 57.981 50.000 26.14 13.35 37.32 6.13
6102 7046 6.072728 TCCACACAAATAGAGTATGTTGCAAC 60.073 38.462 22.83 22.83 0.00 4.17
6170 7114 3.689347 TCATTCATGCTACACCTTTGCT 58.311 40.909 0.00 0.00 0.00 3.91
6172 7116 5.156355 GTGTTCATTCATGCTACACCTTTG 58.844 41.667 11.19 0.00 37.22 2.77
6173 7117 5.376854 GTGTTCATTCATGCTACACCTTT 57.623 39.130 11.19 0.00 37.22 3.11
6221 7248 7.263100 TCACCACATCATCATGCTAATTAAC 57.737 36.000 0.00 0.00 32.57 2.01
6262 7289 7.704899 GCTAAGCTTCCTTAAAAAGTGTCAAAA 59.295 33.333 0.00 0.00 33.37 2.44
6332 7366 7.607250 TCTACAAAAGGAACAAAGAAAAGCAA 58.393 30.769 0.00 0.00 0.00 3.91
6335 7369 9.508567 CTTCTCTACAAAAGGAACAAAGAAAAG 57.491 33.333 0.00 0.00 0.00 2.27
6340 7374 7.793927 ACTCTTCTCTACAAAAGGAACAAAG 57.206 36.000 0.00 0.00 0.00 2.77
6344 7383 8.113173 TCTCTACTCTTCTCTACAAAAGGAAC 57.887 38.462 0.00 0.00 0.00 3.62
6353 7392 9.444600 TTTCTTCTCTTCTCTACTCTTCTCTAC 57.555 37.037 0.00 0.00 0.00 2.59
6354 7393 9.667107 CTTTCTTCTCTTCTCTACTCTTCTCTA 57.333 37.037 0.00 0.00 0.00 2.43
6355 7394 8.383175 TCTTTCTTCTCTTCTCTACTCTTCTCT 58.617 37.037 0.00 0.00 0.00 3.10
6356 7395 8.561738 TCTTTCTTCTCTTCTCTACTCTTCTC 57.438 38.462 0.00 0.00 0.00 2.87
6357 7396 8.960591 CATCTTTCTTCTCTTCTCTACTCTTCT 58.039 37.037 0.00 0.00 0.00 2.85
6358 7397 8.956426 TCATCTTTCTTCTCTTCTCTACTCTTC 58.044 37.037 0.00 0.00 0.00 2.87
6359 7398 8.877864 TCATCTTTCTTCTCTTCTCTACTCTT 57.122 34.615 0.00 0.00 0.00 2.85
6360 7399 8.877864 TTCATCTTTCTTCTCTTCTCTACTCT 57.122 34.615 0.00 0.00 0.00 3.24
6361 7400 9.520204 CATTCATCTTTCTTCTCTTCTCTACTC 57.480 37.037 0.00 0.00 0.00 2.59
6362 7401 7.981225 GCATTCATCTTTCTTCTCTTCTCTACT 59.019 37.037 0.00 0.00 0.00 2.57
6424 7861 3.894427 AGCATAGCAGCAGTAGACACTAT 59.106 43.478 0.00 0.00 36.85 2.12
6494 7968 8.240267 ACCTCCTAGTCTTAAGATACAACATC 57.760 38.462 8.75 0.00 0.00 3.06
6506 7980 5.258841 TGATGAAACGACCTCCTAGTCTTA 58.741 41.667 0.00 0.00 34.46 2.10
6507 7981 4.087182 TGATGAAACGACCTCCTAGTCTT 58.913 43.478 0.00 0.00 34.46 3.01
6515 7995 7.436673 GCCTATATATGATGATGAAACGACCTC 59.563 40.741 0.00 0.00 0.00 3.85
6560 8040 4.664150 TTTGTTGGCCTCTACCTTTTTG 57.336 40.909 3.32 0.00 0.00 2.44
6566 8050 6.091718 TGTTTTATTTTGTTGGCCTCTACC 57.908 37.500 3.32 0.00 0.00 3.18
6567 8051 8.332464 GTTTTGTTTTATTTTGTTGGCCTCTAC 58.668 33.333 3.32 0.00 0.00 2.59
6611 8112 5.000570 ACTAGCACTAGTTATAGGGAGGG 57.999 47.826 4.47 0.00 43.35 4.30
6621 8122 9.604520 GTTCCTCGGAAGAAACTAGCACTAGTT 62.605 44.444 15.67 15.67 44.28 2.24
6622 8123 3.444388 CCTCGGAAGAAACTAGCACTAGT 59.556 47.826 4.47 4.47 41.17 2.57
6623 8124 3.695060 TCCTCGGAAGAAACTAGCACTAG 59.305 47.826 3.10 3.10 41.32 2.57
6624 8125 3.693807 TCCTCGGAAGAAACTAGCACTA 58.306 45.455 0.00 0.00 41.32 2.74
6625 8126 2.526432 TCCTCGGAAGAAACTAGCACT 58.474 47.619 0.00 0.00 41.32 4.40
6669 8170 5.748152 GGCTTCATCAATATCGATCTAGCTC 59.252 44.000 0.00 0.00 32.92 4.09
6675 8176 6.551385 AACTTGGCTTCATCAATATCGATC 57.449 37.500 0.00 0.00 0.00 3.69
6676 8177 6.319658 ACAAACTTGGCTTCATCAATATCGAT 59.680 34.615 2.16 2.16 0.00 3.59
6677 8178 5.647658 ACAAACTTGGCTTCATCAATATCGA 59.352 36.000 0.00 0.00 0.00 3.59
6678 8179 5.883661 ACAAACTTGGCTTCATCAATATCG 58.116 37.500 0.00 0.00 0.00 2.92
6706 8207 3.842732 TGAGCAGCATTTCTTGTGATG 57.157 42.857 0.00 0.00 36.15 3.07
6737 8238 4.347360 TTCCAGCATATCACCATGAGAG 57.653 45.455 0.00 0.00 0.00 3.20
6741 8242 5.301045 AGTTGATTTCCAGCATATCACCATG 59.699 40.000 0.00 0.00 0.00 3.66
6761 8262 0.872021 GGCATCGACGCTAGGAGTTG 60.872 60.000 2.49 0.00 0.00 3.16
6763 8264 2.835705 CGGCATCGACGCTAGGAGT 61.836 63.158 2.49 0.00 39.00 3.85
6764 8265 2.050895 CGGCATCGACGCTAGGAG 60.051 66.667 2.49 0.00 39.00 3.69
6765 8266 3.592814 CCGGCATCGACGCTAGGA 61.593 66.667 11.89 0.00 39.00 2.94
6766 8267 2.421877 AATCCGGCATCGACGCTAGG 62.422 60.000 2.49 7.82 39.00 3.02
6772 8274 1.661821 CGAGGAATCCGGCATCGAC 60.662 63.158 8.64 1.33 39.00 4.20
6794 8296 1.321474 CAAATCCCCATCCATCCACG 58.679 55.000 0.00 0.00 0.00 4.94
6799 8301 2.242043 GAATCGCAAATCCCCATCCAT 58.758 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.