Multiple sequence alignment - TraesCS1B01G480300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G480300 chr1B 100.000 5413 0 0 1 5413 687784486 687789898 0.000000e+00 9997.0
1 TraesCS1B01G480300 chr1B 86.546 2661 289 39 2180 4815 3943618 3946234 0.000000e+00 2867.0
2 TraesCS1B01G480300 chr1B 87.853 2338 265 9 2180 4501 4096814 4099148 0.000000e+00 2726.0
3 TraesCS1B01G480300 chr1B 87.724 2346 247 23 2180 4502 4115772 4118099 0.000000e+00 2699.0
4 TraesCS1B01G480300 chr1B 86.119 1376 169 16 824 2190 4856573 4855211 0.000000e+00 1463.0
5 TraesCS1B01G480300 chr1B 85.285 1332 182 10 856 2184 4150621 4151941 0.000000e+00 1362.0
6 TraesCS1B01G480300 chr1B 84.294 1318 190 15 881 2190 4591761 4590453 0.000000e+00 1271.0
7 TraesCS1B01G480300 chr1B 84.242 1320 183 19 880 2190 4483799 4482496 0.000000e+00 1262.0
8 TraesCS1B01G480300 chr1B 83.663 1316 192 18 877 2184 3951020 3952320 0.000000e+00 1218.0
9 TraesCS1B01G480300 chr1B 89.796 294 28 2 1 292 4859253 4858960 5.120000e-100 375.0
10 TraesCS1B01G480300 chr1B 86.121 281 35 3 4510 4788 4759006 4758728 3.170000e-77 300.0
11 TraesCS1B01G480300 chr1B 85.085 295 30 8 4960 5244 4758672 4758382 6.860000e-74 289.0
12 TraesCS1B01G480300 chr1B 84.615 286 30 9 4960 5235 4587852 4587571 6.910000e-69 272.0
13 TraesCS1B01G480300 chr1B 80.251 319 38 16 4510 4821 4558037 4557737 3.280000e-52 217.0
14 TraesCS1B01G480300 chr1B 83.099 213 36 0 640 852 4511230 4511018 1.540000e-45 195.0
15 TraesCS1B01G480300 chr1B 88.000 150 15 3 4669 4817 3998437 3998584 2.000000e-39 174.0
16 TraesCS1B01G480300 chr1B 76.829 328 50 15 4902 5214 4564172 4563856 1.560000e-35 161.0
17 TraesCS1B01G480300 chr1B 79.570 186 29 6 5053 5235 4099549 4099728 2.050000e-24 124.0
18 TraesCS1B01G480300 chr1B 86.022 93 4 6 4816 4899 431331636 431331728 2.080000e-14 91.6
19 TraesCS1B01G480300 chr1D 97.164 4267 114 7 542 4804 494546487 494550750 0.000000e+00 7203.0
20 TraesCS1B01G480300 chr1D 87.305 2946 323 34 1880 4789 448119 451049 0.000000e+00 3321.0
21 TraesCS1B01G480300 chr1D 86.905 2856 337 19 1941 4770 697003 694159 0.000000e+00 3168.0
22 TraesCS1B01G480300 chr1D 86.316 2682 336 20 1843 4501 460073 462746 0.000000e+00 2891.0
23 TraesCS1B01G480300 chr1D 88.700 2239 241 6 2183 4417 619901 617671 0.000000e+00 2723.0
24 TraesCS1B01G480300 chr1D 84.811 1376 191 12 822 2190 621330 619966 0.000000e+00 1367.0
25 TraesCS1B01G480300 chr1D 85.050 1204 176 4 993 2194 647396 648597 0.000000e+00 1223.0
26 TraesCS1B01G480300 chr1D 84.783 920 125 14 884 1795 723032 722120 0.000000e+00 909.0
27 TraesCS1B01G480300 chr1D 84.499 529 22 22 1 513 494546005 494546489 8.210000e-128 468.0
28 TraesCS1B01G480300 chr1D 93.502 277 13 2 4836 5107 494550750 494551026 1.820000e-109 407.0
29 TraesCS1B01G480300 chr1D 82.609 184 23 6 5055 5235 463146 463323 2.610000e-33 154.0
30 TraesCS1B01G480300 chr1D 77.083 240 24 13 4928 5157 396328 396546 5.730000e-20 110.0
31 TraesCS1B01G480300 chr1D 90.244 82 5 2 4821 4899 145941172 145941091 2.670000e-18 104.0
32 TraesCS1B01G480300 chr1D 88.889 72 7 1 490 560 644317 644388 2.690000e-13 87.9
33 TraesCS1B01G480300 chr1A 85.823 3823 459 54 1044 4821 3681330 3677546 0.000000e+00 3980.0
34 TraesCS1B01G480300 chr1A 86.438 2684 303 38 2183 4821 3655977 3653310 0.000000e+00 2883.0
35 TraesCS1B01G480300 chr1A 86.010 2516 299 25 2180 4649 2975256 2977764 0.000000e+00 2647.0
36 TraesCS1B01G480300 chr1A 85.859 1386 163 24 822 2190 3657555 3656186 0.000000e+00 1443.0
37 TraesCS1B01G480300 chr1A 83.576 1236 184 15 822 2046 3454987 3453760 0.000000e+00 1140.0
38 TraesCS1B01G480300 chr1A 91.126 293 24 2 1 292 3695683 3695392 3.930000e-106 396.0
39 TraesCS1B01G480300 chr1A 85.965 285 36 3 4510 4792 3488365 3488083 8.810000e-78 302.0
40 TraesCS1B01G480300 chr1A 84.859 284 31 7 4960 5235 2986351 2986630 5.340000e-70 276.0
41 TraesCS1B01G480300 chr1A 84.354 294 28 8 4960 5244 3488031 3487747 6.910000e-69 272.0
42 TraesCS1B01G480300 chr1A 83.262 233 26 7 135 367 3657919 3657700 9.190000e-48 202.0
43 TraesCS1B01G480300 chr1A 78.873 284 48 9 550 831 3726204 3725931 1.200000e-41 182.0
44 TraesCS1B01G480300 chr1A 78.370 319 23 27 4510 4821 3451115 3450836 1.210000e-36 165.0
45 TraesCS1B01G480300 chr3D 88.850 2314 235 11 2183 4481 560056873 560054568 0.000000e+00 2822.0
46 TraesCS1B01G480300 chr3D 83.244 1313 198 19 882 2183 560058246 560056945 0.000000e+00 1186.0
47 TraesCS1B01G480300 chr2A 92.771 83 4 1 4817 4897 549890470 549890388 9.520000e-23 119.0
48 TraesCS1B01G480300 chr2A 85.227 88 8 4 4818 4905 659029761 659029843 9.660000e-13 86.1
49 TraesCS1B01G480300 chr6B 91.026 78 6 1 4821 4898 663665679 663665755 2.670000e-18 104.0
50 TraesCS1B01G480300 chr3B 88.764 89 5 3 4814 4897 384062426 384062514 2.670000e-18 104.0
51 TraesCS1B01G480300 chr7A 88.636 88 5 4 4821 4904 63444446 63444532 9.590000e-18 102.0
52 TraesCS1B01G480300 chr5B 87.952 83 7 2 4821 4900 63941669 63941587 1.610000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G480300 chr1B 687784486 687789898 5412 False 9997.000000 9997 100.000000 1 5413 1 chr1B.!!$F7 5412
1 TraesCS1B01G480300 chr1B 3943618 3946234 2616 False 2867.000000 2867 86.546000 2180 4815 1 chr1B.!!$F1 2635
2 TraesCS1B01G480300 chr1B 4115772 4118099 2327 False 2699.000000 2699 87.724000 2180 4502 1 chr1B.!!$F4 2322
3 TraesCS1B01G480300 chr1B 4096814 4099728 2914 False 1425.000000 2726 83.711500 2180 5235 2 chr1B.!!$F8 3055
4 TraesCS1B01G480300 chr1B 4150621 4151941 1320 False 1362.000000 1362 85.285000 856 2184 1 chr1B.!!$F5 1328
5 TraesCS1B01G480300 chr1B 4482496 4483799 1303 True 1262.000000 1262 84.242000 880 2190 1 chr1B.!!$R1 1310
6 TraesCS1B01G480300 chr1B 3951020 3952320 1300 False 1218.000000 1218 83.663000 877 2184 1 chr1B.!!$F2 1307
7 TraesCS1B01G480300 chr1B 4855211 4859253 4042 True 919.000000 1463 87.957500 1 2190 2 chr1B.!!$R7 2189
8 TraesCS1B01G480300 chr1B 4587571 4591761 4190 True 771.500000 1271 84.454500 881 5235 2 chr1B.!!$R5 4354
9 TraesCS1B01G480300 chr1B 4758382 4759006 624 True 294.500000 300 85.603000 4510 5244 2 chr1B.!!$R6 734
10 TraesCS1B01G480300 chr1D 448119 451049 2930 False 3321.000000 3321 87.305000 1880 4789 1 chr1D.!!$F2 2909
11 TraesCS1B01G480300 chr1D 694159 697003 2844 True 3168.000000 3168 86.905000 1941 4770 1 chr1D.!!$R1 2829
12 TraesCS1B01G480300 chr1D 494546005 494551026 5021 False 2692.666667 7203 91.721667 1 5107 3 chr1D.!!$F5 5106
13 TraesCS1B01G480300 chr1D 617671 621330 3659 True 2045.000000 2723 86.755500 822 4417 2 chr1D.!!$R4 3595
14 TraesCS1B01G480300 chr1D 460073 463323 3250 False 1522.500000 2891 84.462500 1843 5235 2 chr1D.!!$F3 3392
15 TraesCS1B01G480300 chr1D 722120 723032 912 True 909.000000 909 84.783000 884 1795 1 chr1D.!!$R2 911
16 TraesCS1B01G480300 chr1D 644317 648597 4280 False 655.450000 1223 86.969500 490 2194 2 chr1D.!!$F4 1704
17 TraesCS1B01G480300 chr1A 3677546 3681330 3784 True 3980.000000 3980 85.823000 1044 4821 1 chr1A.!!$R1 3777
18 TraesCS1B01G480300 chr1A 2975256 2977764 2508 False 2647.000000 2647 86.010000 2180 4649 1 chr1A.!!$F1 2469
19 TraesCS1B01G480300 chr1A 3653310 3657919 4609 True 1509.333333 2883 85.186333 135 4821 3 chr1A.!!$R6 4686
20 TraesCS1B01G480300 chr1A 3450836 3454987 4151 True 652.500000 1140 80.973000 822 4821 2 chr1A.!!$R4 3999
21 TraesCS1B01G480300 chr1A 3487747 3488365 618 True 287.000000 302 85.159500 4510 5244 2 chr1A.!!$R5 734
22 TraesCS1B01G480300 chr3D 560054568 560058246 3678 True 2004.000000 2822 86.047000 882 4481 2 chr3D.!!$R1 3599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 436 0.184933 TGGGGTCAACAAGACTTGGG 59.815 55.000 19.16 10.86 46.72 4.12 F
435 438 0.185175 GGGTCAACAAGACTTGGGGT 59.815 55.000 19.16 1.60 46.72 4.95 F
1130 5984 1.079490 TGGAGGGATCTCACTGAGGTT 59.921 52.381 6.20 0.00 41.69 3.50 F
1143 5997 1.278637 GAGGTTTCAACACACGGCG 59.721 57.895 4.80 4.80 0.00 6.46 F
2631 7850 2.158608 GGGTTCCATACCTCCAATCCTG 60.159 54.545 0.00 0.00 46.86 3.86 F
3545 8767 2.071540 TGCTGTGAAGAAGCTTCATCG 58.928 47.619 27.57 13.68 41.42 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 6519 3.602483 GGTATCAAACCGCTTAAGGTGA 58.398 45.455 4.29 0.00 45.21 4.02 R
2210 7425 6.814506 ATATATGCAGTTCTTGGATGCTTC 57.185 37.500 0.00 0.00 38.43 3.86 R
2667 7886 4.148079 TCTCACCGCTGAGATGATTAGAT 58.852 43.478 6.33 0.00 46.79 1.98 R
2793 8012 6.154534 TGTTCCCAGATATATCAAGGTATCCG 59.845 42.308 15.08 3.98 0.00 4.18 R
4264 9503 0.320160 CAAGCAAGAAAAGGCCAGCC 60.320 55.000 5.01 0.00 0.00 4.85 R
5080 10879 0.391228 TTGACGCACCTAACTCTGCA 59.609 50.000 0.00 0.00 32.57 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.127589 CCAAAATTCAACACGGAAACCC 58.872 45.455 0.00 0.00 0.00 4.11
53 54 3.726291 AATTCAACACGGAAACCCTTG 57.274 42.857 0.00 0.00 0.00 3.61
106 109 4.622313 CACATTTAATCATTGCGTTGCAGT 59.378 37.500 0.00 0.00 40.61 4.40
119 122 1.128692 GTTGCAGTACCGACAATGAGC 59.871 52.381 0.00 0.00 0.00 4.26
121 124 1.001974 TGCAGTACCGACAATGAGCTT 59.998 47.619 0.00 0.00 0.00 3.74
193 196 4.135747 AGAGAATAGCTTGAGACAAGCC 57.864 45.455 25.83 14.57 44.01 4.35
221 224 5.644644 CCATTTCTTTATGGAACTGCAGTC 58.355 41.667 21.95 13.39 46.63 3.51
233 236 1.538512 ACTGCAGTCACATGTTGCATC 59.461 47.619 20.79 1.40 45.72 3.91
271 274 9.784531 AAGATATACTATCAAACCAATCACAGG 57.215 33.333 0.00 0.00 0.00 4.00
286 289 8.006564 ACCAATCACAGGATATACCATCAAATT 58.993 33.333 0.00 0.00 42.04 1.82
300 303 9.855021 ATACCATCAAATTAAAAACACTACTGC 57.145 29.630 0.00 0.00 0.00 4.40
301 304 7.721402 ACCATCAAATTAAAAACACTACTGCA 58.279 30.769 0.00 0.00 0.00 4.41
302 305 8.200792 ACCATCAAATTAAAAACACTACTGCAA 58.799 29.630 0.00 0.00 0.00 4.08
312 315 7.801716 AAAACACTACTGCAATCTTAACTCA 57.198 32.000 0.00 0.00 0.00 3.41
313 316 7.801716 AAACACTACTGCAATCTTAACTCAA 57.198 32.000 0.00 0.00 0.00 3.02
314 317 7.426929 AACACTACTGCAATCTTAACTCAAG 57.573 36.000 0.00 0.00 35.38 3.02
315 318 6.525629 ACACTACTGCAATCTTAACTCAAGT 58.474 36.000 0.00 0.00 35.58 3.16
316 319 6.647067 ACACTACTGCAATCTTAACTCAAGTC 59.353 38.462 0.00 0.00 35.58 3.01
317 320 6.870965 CACTACTGCAATCTTAACTCAAGTCT 59.129 38.462 0.00 0.00 35.58 3.24
318 321 8.029522 CACTACTGCAATCTTAACTCAAGTCTA 58.970 37.037 0.00 0.00 35.58 2.59
319 322 8.754080 ACTACTGCAATCTTAACTCAAGTCTAT 58.246 33.333 0.00 0.00 35.58 1.98
320 323 9.593134 CTACTGCAATCTTAACTCAAGTCTATT 57.407 33.333 0.00 0.00 35.58 1.73
321 324 8.854614 ACTGCAATCTTAACTCAAGTCTATTT 57.145 30.769 0.00 0.00 35.58 1.40
322 325 8.940952 ACTGCAATCTTAACTCAAGTCTATTTC 58.059 33.333 0.00 0.00 35.58 2.17
323 326 8.846943 TGCAATCTTAACTCAAGTCTATTTCA 57.153 30.769 0.00 0.00 35.58 2.69
324 327 8.939929 TGCAATCTTAACTCAAGTCTATTTCAG 58.060 33.333 0.00 0.00 35.58 3.02
325 328 8.940952 GCAATCTTAACTCAAGTCTATTTCAGT 58.059 33.333 0.00 0.00 35.58 3.41
327 330 7.891183 TCTTAACTCAAGTCTATTTCAGTGC 57.109 36.000 0.00 0.00 35.58 4.40
328 331 7.441836 TCTTAACTCAAGTCTATTTCAGTGCA 58.558 34.615 0.00 0.00 35.58 4.57
329 332 8.097038 TCTTAACTCAAGTCTATTTCAGTGCAT 58.903 33.333 0.00 0.00 35.58 3.96
330 333 9.371136 CTTAACTCAAGTCTATTTCAGTGCATA 57.629 33.333 0.00 0.00 0.00 3.14
331 334 9.719355 TTAACTCAAGTCTATTTCAGTGCATAA 57.281 29.630 0.00 0.00 0.00 1.90
332 335 7.840342 ACTCAAGTCTATTTCAGTGCATAAG 57.160 36.000 0.00 0.00 0.00 1.73
333 336 7.390027 ACTCAAGTCTATTTCAGTGCATAAGT 58.610 34.615 0.00 0.00 0.00 2.24
334 337 7.880195 ACTCAAGTCTATTTCAGTGCATAAGTT 59.120 33.333 0.00 0.00 0.00 2.66
335 338 8.032952 TCAAGTCTATTTCAGTGCATAAGTTG 57.967 34.615 0.00 0.00 0.00 3.16
336 339 7.661437 TCAAGTCTATTTCAGTGCATAAGTTGT 59.339 33.333 0.00 0.00 0.00 3.32
337 340 8.935844 CAAGTCTATTTCAGTGCATAAGTTGTA 58.064 33.333 0.00 0.00 0.00 2.41
338 341 8.709386 AGTCTATTTCAGTGCATAAGTTGTAG 57.291 34.615 0.00 0.00 0.00 2.74
339 342 8.531982 AGTCTATTTCAGTGCATAAGTTGTAGA 58.468 33.333 0.00 0.00 0.00 2.59
340 343 8.596380 GTCTATTTCAGTGCATAAGTTGTAGAC 58.404 37.037 0.00 0.17 0.00 2.59
341 344 5.839262 TTTCAGTGCATAAGTTGTAGACG 57.161 39.130 0.00 0.00 0.00 4.18
342 345 3.845178 TCAGTGCATAAGTTGTAGACGG 58.155 45.455 0.00 0.00 0.00 4.79
343 346 3.508402 TCAGTGCATAAGTTGTAGACGGA 59.492 43.478 0.00 0.00 0.00 4.69
344 347 4.021807 TCAGTGCATAAGTTGTAGACGGAA 60.022 41.667 0.00 0.00 0.00 4.30
345 348 4.327357 CAGTGCATAAGTTGTAGACGGAAG 59.673 45.833 0.00 0.00 0.00 3.46
346 349 4.219944 AGTGCATAAGTTGTAGACGGAAGA 59.780 41.667 0.00 0.00 0.00 2.87
347 350 4.326548 GTGCATAAGTTGTAGACGGAAGAC 59.673 45.833 0.00 0.00 0.00 3.01
348 351 4.021807 TGCATAAGTTGTAGACGGAAGACA 60.022 41.667 0.00 0.00 0.00 3.41
349 352 4.927425 GCATAAGTTGTAGACGGAAGACAA 59.073 41.667 0.00 0.00 0.00 3.18
350 353 5.062308 GCATAAGTTGTAGACGGAAGACAAG 59.938 44.000 0.00 0.00 33.91 3.16
351 354 4.667519 AAGTTGTAGACGGAAGACAAGT 57.332 40.909 0.00 0.00 38.15 3.16
352 355 3.978687 AGTTGTAGACGGAAGACAAGTG 58.021 45.455 0.00 0.00 35.83 3.16
353 356 3.383825 AGTTGTAGACGGAAGACAAGTGT 59.616 43.478 0.00 0.00 35.83 3.55
354 357 3.364889 TGTAGACGGAAGACAAGTGTG 57.635 47.619 0.00 0.00 0.00 3.82
355 358 2.953648 TGTAGACGGAAGACAAGTGTGA 59.046 45.455 0.00 0.00 0.00 3.58
356 359 3.382227 TGTAGACGGAAGACAAGTGTGAA 59.618 43.478 0.00 0.00 0.00 3.18
357 360 3.536956 AGACGGAAGACAAGTGTGAAA 57.463 42.857 0.00 0.00 0.00 2.69
358 361 3.195661 AGACGGAAGACAAGTGTGAAAC 58.804 45.455 0.00 0.00 37.35 2.78
372 375 3.659786 TGTGAAACATACGAGTCTTGGG 58.340 45.455 0.00 0.00 45.67 4.12
373 376 3.000727 GTGAAACATACGAGTCTTGGGG 58.999 50.000 0.00 0.00 36.32 4.96
374 377 2.635915 TGAAACATACGAGTCTTGGGGT 59.364 45.455 0.00 0.00 0.00 4.95
375 378 3.259902 GAAACATACGAGTCTTGGGGTC 58.740 50.000 0.00 0.00 0.00 4.46
376 379 1.933021 ACATACGAGTCTTGGGGTCA 58.067 50.000 0.00 0.00 0.00 4.02
377 380 2.253610 ACATACGAGTCTTGGGGTCAA 58.746 47.619 0.00 0.00 0.00 3.18
387 390 2.597455 CTTGGGGTCAAGGATTTGTGT 58.403 47.619 0.00 0.00 44.89 3.72
388 391 1.993956 TGGGGTCAAGGATTTGTGTG 58.006 50.000 0.00 0.00 35.73 3.82
389 392 1.496857 TGGGGTCAAGGATTTGTGTGA 59.503 47.619 0.00 0.00 35.73 3.58
390 393 2.091610 TGGGGTCAAGGATTTGTGTGAA 60.092 45.455 0.00 0.00 35.73 3.18
391 394 2.296190 GGGGTCAAGGATTTGTGTGAAC 59.704 50.000 0.00 0.00 35.73 3.18
392 395 2.296190 GGGTCAAGGATTTGTGTGAACC 59.704 50.000 0.00 0.00 40.50 3.62
393 396 2.955660 GGTCAAGGATTTGTGTGAACCA 59.044 45.455 0.00 0.00 35.73 3.67
394 397 3.243401 GGTCAAGGATTTGTGTGAACCAC 60.243 47.826 0.00 0.00 44.78 4.16
404 407 2.731217 GTGTGAACCACAATTCAGTGC 58.269 47.619 0.95 0.00 46.28 4.40
405 408 2.098934 GTGTGAACCACAATTCAGTGCA 59.901 45.455 0.95 0.00 46.28 4.57
406 409 2.957680 TGTGAACCACAATTCAGTGCAT 59.042 40.909 0.00 0.00 41.69 3.96
407 410 4.023279 GTGTGAACCACAATTCAGTGCATA 60.023 41.667 0.95 0.00 46.28 3.14
408 411 4.582240 TGTGAACCACAATTCAGTGCATAA 59.418 37.500 0.00 0.00 41.69 1.90
409 412 5.156355 GTGAACCACAATTCAGTGCATAAG 58.844 41.667 0.00 0.00 39.25 1.73
410 413 4.826733 TGAACCACAATTCAGTGCATAAGT 59.173 37.500 0.00 0.00 38.18 2.24
411 414 5.301551 TGAACCACAATTCAGTGCATAAGTT 59.698 36.000 0.00 0.00 38.18 2.66
412 415 5.125100 ACCACAATTCAGTGCATAAGTTG 57.875 39.130 0.00 0.00 38.18 3.16
424 427 2.513753 CATAAGTTGCTGGGGTCAACA 58.486 47.619 8.33 0.00 44.50 3.33
425 428 2.738587 TAAGTTGCTGGGGTCAACAA 57.261 45.000 8.33 0.00 44.50 2.83
426 429 1.402787 AAGTTGCTGGGGTCAACAAG 58.597 50.000 8.33 0.00 44.50 3.16
427 430 0.550914 AGTTGCTGGGGTCAACAAGA 59.449 50.000 8.33 0.00 44.50 3.02
428 431 0.668535 GTTGCTGGGGTCAACAAGAC 59.331 55.000 1.48 0.00 46.83 3.01
429 432 0.550914 TTGCTGGGGTCAACAAGACT 59.449 50.000 0.00 0.00 46.72 3.24
430 433 0.550914 TGCTGGGGTCAACAAGACTT 59.449 50.000 0.00 0.00 46.72 3.01
431 434 0.954452 GCTGGGGTCAACAAGACTTG 59.046 55.000 13.77 13.77 46.72 3.16
432 435 1.609208 CTGGGGTCAACAAGACTTGG 58.391 55.000 19.16 2.81 46.72 3.61
433 436 0.184933 TGGGGTCAACAAGACTTGGG 59.815 55.000 19.16 10.86 46.72 4.12
434 437 0.539669 GGGGTCAACAAGACTTGGGG 60.540 60.000 19.16 10.52 46.72 4.96
435 438 0.185175 GGGTCAACAAGACTTGGGGT 59.815 55.000 19.16 1.60 46.72 4.95
436 439 1.605753 GGTCAACAAGACTTGGGGTC 58.394 55.000 19.16 8.24 46.72 4.46
437 440 1.133915 GGTCAACAAGACTTGGGGTCA 60.134 52.381 19.16 0.00 46.72 4.02
438 441 2.650322 GTCAACAAGACTTGGGGTCAA 58.350 47.619 19.16 0.00 46.72 3.18
439 442 3.222603 GTCAACAAGACTTGGGGTCAAT 58.777 45.455 19.16 0.00 46.72 2.57
440 443 3.004734 GTCAACAAGACTTGGGGTCAATG 59.995 47.826 19.16 6.67 46.72 2.82
441 444 3.117701 TCAACAAGACTTGGGGTCAATGA 60.118 43.478 19.16 8.57 46.72 2.57
442 445 3.814504 ACAAGACTTGGGGTCAATGAT 57.185 42.857 19.16 0.00 46.72 2.45
443 446 4.118168 ACAAGACTTGGGGTCAATGATT 57.882 40.909 19.16 0.00 46.72 2.57
444 447 5.255397 ACAAGACTTGGGGTCAATGATTA 57.745 39.130 19.16 0.00 46.72 1.75
445 448 5.256474 ACAAGACTTGGGGTCAATGATTAG 58.744 41.667 19.16 0.00 46.72 1.73
446 449 5.222130 ACAAGACTTGGGGTCAATGATTAGT 60.222 40.000 19.16 0.00 46.72 2.24
447 450 4.848357 AGACTTGGGGTCAATGATTAGTG 58.152 43.478 0.00 0.00 46.72 2.74
448 451 4.289672 AGACTTGGGGTCAATGATTAGTGT 59.710 41.667 0.00 0.00 46.72 3.55
449 452 4.335416 ACTTGGGGTCAATGATTAGTGTG 58.665 43.478 0.00 0.00 31.75 3.82
450 453 4.042809 ACTTGGGGTCAATGATTAGTGTGA 59.957 41.667 0.00 0.00 31.75 3.58
451 454 4.649267 TGGGGTCAATGATTAGTGTGAA 57.351 40.909 0.00 0.00 0.00 3.18
452 455 4.331968 TGGGGTCAATGATTAGTGTGAAC 58.668 43.478 0.00 0.00 0.00 3.18
453 456 3.694566 GGGGTCAATGATTAGTGTGAACC 59.305 47.826 0.00 0.00 45.51 3.62
454 457 4.331968 GGGTCAATGATTAGTGTGAACCA 58.668 43.478 1.72 0.00 45.54 3.67
455 458 4.156008 GGGTCAATGATTAGTGTGAACCAC 59.844 45.833 1.72 0.00 45.54 4.16
465 468 2.981875 GTGTGAACCACGATTCAACAC 58.018 47.619 0.00 4.52 40.22 3.32
466 469 2.612212 GTGTGAACCACGATTCAACACT 59.388 45.455 16.70 0.00 40.22 3.55
467 470 2.611751 TGTGAACCACGATTCAACACTG 59.388 45.455 0.00 0.00 40.22 3.66
468 471 2.869801 GTGAACCACGATTCAACACTGA 59.130 45.455 0.00 0.00 40.22 3.41
469 472 3.311322 GTGAACCACGATTCAACACTGAA 59.689 43.478 0.00 0.00 45.53 3.02
470 473 3.559655 TGAACCACGATTCAACACTGAAG 59.440 43.478 0.00 0.00 44.68 3.02
471 474 3.469008 ACCACGATTCAACACTGAAGA 57.531 42.857 0.00 0.00 44.68 2.87
472 475 3.804036 ACCACGATTCAACACTGAAGAA 58.196 40.909 0.00 0.00 44.68 2.52
473 476 4.389374 ACCACGATTCAACACTGAAGAAT 58.611 39.130 0.00 0.00 44.68 2.40
474 477 4.821805 ACCACGATTCAACACTGAAGAATT 59.178 37.500 0.00 0.00 44.68 2.17
475 478 5.049405 ACCACGATTCAACACTGAAGAATTC 60.049 40.000 0.00 0.00 44.68 2.17
476 479 5.385617 CACGATTCAACACTGAAGAATTCC 58.614 41.667 0.65 0.00 46.93 3.01
477 480 5.049474 CACGATTCAACACTGAAGAATTCCA 60.049 40.000 0.65 0.00 46.93 3.53
478 481 5.180117 ACGATTCAACACTGAAGAATTCCAG 59.820 40.000 0.65 6.02 46.93 3.86
479 482 4.836125 TTCAACACTGAAGAATTCCAGC 57.164 40.909 10.57 0.00 46.93 4.85
480 483 3.819368 TCAACACTGAAGAATTCCAGCA 58.181 40.909 10.57 2.81 46.93 4.41
481 484 3.565482 TCAACACTGAAGAATTCCAGCAC 59.435 43.478 10.57 0.00 46.93 4.40
482 485 2.146342 ACACTGAAGAATTCCAGCACG 58.854 47.619 10.57 4.16 46.93 5.34
483 486 1.466167 CACTGAAGAATTCCAGCACGG 59.534 52.381 10.57 3.06 46.93 4.94
484 487 1.347707 ACTGAAGAATTCCAGCACGGA 59.652 47.619 10.57 0.00 46.93 4.69
485 488 2.026822 ACTGAAGAATTCCAGCACGGAT 60.027 45.455 10.57 0.00 46.93 4.18
486 489 3.012518 CTGAAGAATTCCAGCACGGATT 58.987 45.455 0.65 0.00 46.93 3.01
487 490 3.420893 TGAAGAATTCCAGCACGGATTT 58.579 40.909 0.65 0.00 46.93 2.17
488 491 3.826157 TGAAGAATTCCAGCACGGATTTT 59.174 39.130 0.65 0.00 46.93 1.82
489 492 4.280677 TGAAGAATTCCAGCACGGATTTTT 59.719 37.500 0.65 0.00 46.93 1.94
535 538 2.705658 TGTCACCAGTCATGAGTCCTTT 59.294 45.455 0.00 0.00 0.00 3.11
542 5271 5.426833 ACCAGTCATGAGTCCTTTAGCTAAT 59.573 40.000 7.08 0.00 0.00 1.73
547 5276 9.771534 AGTCATGAGTCCTTTAGCTAATTATTC 57.228 33.333 7.08 3.38 0.00 1.75
615 5344 3.827008 TGGCTTAAGGCATGACTAGAG 57.173 47.619 26.43 3.86 46.12 2.43
753 5485 3.134804 ACGTAGGAGAAATGGGGAAGATG 59.865 47.826 0.00 0.00 0.00 2.90
766 5498 2.223758 GGGAAGATGTGAGTAGGCGTAC 60.224 54.545 8.53 8.53 0.00 3.67
817 5574 2.312348 GTGTGTTATTTTTCCACGCGG 58.688 47.619 12.47 0.00 30.93 6.46
1010 5861 2.351111 CCAAACACAACATGCAAACACC 59.649 45.455 0.00 0.00 0.00 4.16
1039 5890 4.021719 ACAAAATGCCATCTTCCTCAACAG 60.022 41.667 0.00 0.00 0.00 3.16
1089 5943 1.674221 CCGTGCCTTCTTCTCTTGGAG 60.674 57.143 0.00 0.00 0.00 3.86
1130 5984 1.079490 TGGAGGGATCTCACTGAGGTT 59.921 52.381 6.20 0.00 41.69 3.50
1143 5997 1.278637 GAGGTTTCAACACACGGCG 59.721 57.895 4.80 4.80 0.00 6.46
1152 6006 4.457496 CACACGGCGCTCCTCCAT 62.457 66.667 6.90 0.00 0.00 3.41
1458 6313 4.137543 ACCTCAACTTCAACCATCTCAAC 58.862 43.478 0.00 0.00 0.00 3.18
1644 6499 2.224523 TGGAAGGCTTGTCAACCTACAG 60.225 50.000 3.46 0.00 34.31 2.74
2146 7145 6.828785 CAGCTTAGGAAACATTACCAACCTAT 59.171 38.462 0.00 0.00 31.49 2.57
2210 7425 4.713854 CAAAATCTTTTGGGAAGTTGCG 57.286 40.909 7.38 0.00 42.81 4.85
2298 7513 7.201652 GGAGATGTCATAAGCCTTGTTAAACTC 60.202 40.741 0.00 0.00 0.00 3.01
2607 7826 9.326413 GTACTACACCTAGCACAAAATATGATT 57.674 33.333 0.00 0.00 0.00 2.57
2631 7850 2.158608 GGGTTCCATACCTCCAATCCTG 60.159 54.545 0.00 0.00 46.86 3.86
2667 7886 3.198200 ACCTAGTAGAGCTGAGACTCGAA 59.802 47.826 0.00 0.00 41.77 3.71
2793 8012 6.201425 CAGAGATAGAAAAGCTCAGCAATCTC 59.799 42.308 15.37 15.37 0.00 2.75
3045 8264 9.162793 CTGAATTTATCGCATAATCAGTTCAAC 57.837 33.333 0.00 0.00 31.74 3.18
3277 8499 7.122501 AGACATTTGGTTTTCTTTTGCCAATTT 59.877 29.630 0.00 0.00 40.23 1.82
3282 8504 7.082700 TGGTTTTCTTTTGCCAATTTTTCTC 57.917 32.000 0.00 0.00 0.00 2.87
3438 8660 4.772434 CATTTGACGATATTGTAAGGGCG 58.228 43.478 0.00 0.00 0.00 6.13
3545 8767 2.071540 TGCTGTGAAGAAGCTTCATCG 58.928 47.619 27.57 13.68 41.42 3.84
3689 8914 5.582550 TCTTGTCTATGACTACATTCAGCG 58.417 41.667 0.00 0.00 37.87 5.18
3822 9047 6.101150 ACCAAGAATGCAGTCCACCTATAATA 59.899 38.462 11.14 0.00 0.00 0.98
3859 9084 4.093998 CGAGCAGCAACATCTTACTTGATT 59.906 41.667 0.00 0.00 0.00 2.57
4209 9448 5.592054 TGCTGGTGAAAGATATTCTAGACG 58.408 41.667 0.00 0.00 0.00 4.18
4264 9503 6.514947 AGAATAGCTTAGTTCTGCTCATCAG 58.485 40.000 0.00 0.00 44.21 2.90
4475 10213 2.045561 TGGTTTCCGCTTTTGACTCA 57.954 45.000 0.00 0.00 0.00 3.41
4491 10229 4.128925 GACTCAAGTCACTCATATGCCA 57.871 45.455 5.28 0.00 44.18 4.92
4829 10613 7.607615 TGGTGTACTAATAATTACTCCCTCC 57.392 40.000 0.00 0.00 32.93 4.30
4830 10614 7.134162 TGGTGTACTAATAATTACTCCCTCCA 58.866 38.462 0.00 0.00 32.93 3.86
4831 10615 7.792736 TGGTGTACTAATAATTACTCCCTCCAT 59.207 37.037 0.00 0.00 32.93 3.41
4832 10616 8.312564 GGTGTACTAATAATTACTCCCTCCATC 58.687 40.741 0.00 0.00 0.00 3.51
4833 10617 8.312564 GTGTACTAATAATTACTCCCTCCATCC 58.687 40.741 0.00 0.00 0.00 3.51
4834 10618 6.954352 ACTAATAATTACTCCCTCCATCCC 57.046 41.667 0.00 0.00 0.00 3.85
4886 10670 6.882140 TCAACAAACGTCTTACATTATGGGAT 59.118 34.615 0.00 0.00 0.00 3.85
5034 10818 0.984230 TACCTTGGACCAAGCAGGAG 59.016 55.000 26.34 15.61 39.85 3.69
5051 10849 4.517832 GCAGGAGCAATCACAATGATATCA 59.482 41.667 8.10 8.10 35.76 2.15
5107 10906 3.564225 AGTTAGGTGCGTCAAAAAGGAAG 59.436 43.478 0.00 0.00 0.00 3.46
5117 10916 5.449304 CGTCAAAAAGGAAGATTACCACAC 58.551 41.667 0.00 0.00 0.00 3.82
5118 10917 5.238650 CGTCAAAAAGGAAGATTACCACACT 59.761 40.000 0.00 0.00 0.00 3.55
5119 10918 6.425721 CGTCAAAAAGGAAGATTACCACACTA 59.574 38.462 0.00 0.00 0.00 2.74
5150 10949 5.453567 AAAATGACTTACAGAAGGGTTGC 57.546 39.130 0.00 0.00 36.95 4.17
5166 10965 0.543277 TTGCAGGGCAGGAGTATGAG 59.457 55.000 0.00 0.00 40.61 2.90
5251 11050 7.865385 TGGAACAACATACACTTTATTTCAAGC 59.135 33.333 0.00 0.00 31.92 4.01
5252 11051 7.865385 GGAACAACATACACTTTATTTCAAGCA 59.135 33.333 0.00 0.00 0.00 3.91
5253 11052 9.410556 GAACAACATACACTTTATTTCAAGCAT 57.589 29.630 0.00 0.00 0.00 3.79
5254 11053 9.762933 AACAACATACACTTTATTTCAAGCATT 57.237 25.926 0.00 0.00 0.00 3.56
5268 11067 3.688272 CAAGCATTGGTTAGCGAGAATG 58.312 45.455 0.00 0.00 43.94 2.67
5269 11068 3.266510 AGCATTGGTTAGCGAGAATGA 57.733 42.857 0.00 0.00 35.48 2.57
5270 11069 2.939103 AGCATTGGTTAGCGAGAATGAC 59.061 45.455 0.00 0.00 35.48 3.06
5271 11070 2.677836 GCATTGGTTAGCGAGAATGACA 59.322 45.455 0.00 0.00 0.00 3.58
5272 11071 3.313526 GCATTGGTTAGCGAGAATGACAT 59.686 43.478 0.00 0.00 0.00 3.06
5273 11072 4.787563 GCATTGGTTAGCGAGAATGACATG 60.788 45.833 0.00 0.00 0.00 3.21
5274 11073 2.905075 TGGTTAGCGAGAATGACATGG 58.095 47.619 0.00 0.00 0.00 3.66
5275 11074 2.499693 TGGTTAGCGAGAATGACATGGA 59.500 45.455 0.00 0.00 0.00 3.41
5276 11075 3.055458 TGGTTAGCGAGAATGACATGGAA 60.055 43.478 0.00 0.00 0.00 3.53
5277 11076 3.309954 GGTTAGCGAGAATGACATGGAAC 59.690 47.826 0.00 0.00 0.00 3.62
5296 11095 7.748691 TGGAACAACTAGGTACCAATTTAAC 57.251 36.000 15.94 0.00 31.92 2.01
5297 11096 7.519927 TGGAACAACTAGGTACCAATTTAACT 58.480 34.615 15.94 0.00 31.92 2.24
5298 11097 7.662669 TGGAACAACTAGGTACCAATTTAACTC 59.337 37.037 15.94 1.47 31.92 3.01
5299 11098 7.662669 GGAACAACTAGGTACCAATTTAACTCA 59.337 37.037 15.94 0.00 0.00 3.41
5300 11099 8.617290 AACAACTAGGTACCAATTTAACTCAG 57.383 34.615 15.94 0.00 0.00 3.35
5301 11100 6.653740 ACAACTAGGTACCAATTTAACTCAGC 59.346 38.462 15.94 0.00 0.00 4.26
5302 11101 6.622427 ACTAGGTACCAATTTAACTCAGCT 57.378 37.500 15.94 0.00 0.00 4.24
5303 11102 7.729124 ACTAGGTACCAATTTAACTCAGCTA 57.271 36.000 15.94 0.00 0.00 3.32
5304 11103 7.783042 ACTAGGTACCAATTTAACTCAGCTAG 58.217 38.462 15.94 4.20 38.16 3.42
5305 11104 6.622427 AGGTACCAATTTAACTCAGCTAGT 57.378 37.500 15.94 0.00 41.49 2.57
5306 11105 6.407202 AGGTACCAATTTAACTCAGCTAGTG 58.593 40.000 15.94 0.00 38.88 2.74
5307 11106 5.064834 GGTACCAATTTAACTCAGCTAGTGC 59.935 44.000 7.15 0.00 38.88 4.40
5308 11107 4.651778 ACCAATTTAACTCAGCTAGTGCA 58.348 39.130 0.00 0.00 42.74 4.57
5309 11108 5.070001 ACCAATTTAACTCAGCTAGTGCAA 58.930 37.500 0.00 0.00 42.74 4.08
5310 11109 5.711976 ACCAATTTAACTCAGCTAGTGCAAT 59.288 36.000 0.00 0.00 42.74 3.56
5311 11110 6.127897 ACCAATTTAACTCAGCTAGTGCAATC 60.128 38.462 0.00 0.00 42.74 2.67
5312 11111 6.127925 CCAATTTAACTCAGCTAGTGCAATCA 60.128 38.462 0.00 0.00 42.74 2.57
5313 11112 5.862924 TTTAACTCAGCTAGTGCAATCAC 57.137 39.130 0.00 0.00 43.44 3.06
5314 11113 3.407424 AACTCAGCTAGTGCAATCACA 57.593 42.857 0.00 0.00 45.49 3.58
5315 11114 2.693069 ACTCAGCTAGTGCAATCACAC 58.307 47.619 0.00 0.00 45.49 3.82
5316 11115 2.037641 ACTCAGCTAGTGCAATCACACA 59.962 45.455 0.00 0.00 45.49 3.72
5317 11116 2.414481 CTCAGCTAGTGCAATCACACAC 59.586 50.000 0.00 0.00 45.49 3.82
5318 11117 2.145536 CAGCTAGTGCAATCACACACA 58.854 47.619 0.00 0.00 45.49 3.72
5319 11118 2.745821 CAGCTAGTGCAATCACACACAT 59.254 45.455 0.00 0.00 45.49 3.21
5320 11119 2.745821 AGCTAGTGCAATCACACACATG 59.254 45.455 0.00 0.00 45.49 3.21
5321 11120 2.730090 GCTAGTGCAATCACACACATGC 60.730 50.000 0.00 0.00 45.49 4.06
5322 11121 1.612676 AGTGCAATCACACACATGCT 58.387 45.000 0.00 0.00 45.49 3.79
5323 11122 2.781923 AGTGCAATCACACACATGCTA 58.218 42.857 0.00 0.00 45.49 3.49
5324 11123 3.148412 AGTGCAATCACACACATGCTAA 58.852 40.909 0.00 0.00 45.49 3.09
5325 11124 3.058016 AGTGCAATCACACACATGCTAAC 60.058 43.478 0.00 0.00 45.49 2.34
5326 11125 2.883386 TGCAATCACACACATGCTAACA 59.117 40.909 0.00 0.00 39.49 2.41
5327 11126 3.058085 TGCAATCACACACATGCTAACAG 60.058 43.478 0.00 0.00 39.49 3.16
5328 11127 3.495193 CAATCACACACATGCTAACAGC 58.505 45.455 0.00 0.00 42.82 4.40
5342 11141 4.962693 GCTAACAGCAGAATGTACAACAG 58.037 43.478 0.00 0.00 41.89 3.16
5343 11142 4.452455 GCTAACAGCAGAATGTACAACAGT 59.548 41.667 0.00 0.00 41.89 3.55
5344 11143 5.637810 GCTAACAGCAGAATGTACAACAGTA 59.362 40.000 0.00 0.00 41.89 2.74
5345 11144 6.313905 GCTAACAGCAGAATGTACAACAGTAT 59.686 38.462 0.00 0.00 41.89 2.12
5346 11145 7.491372 GCTAACAGCAGAATGTACAACAGTATA 59.509 37.037 0.00 0.00 41.89 1.47
5347 11146 7.834068 AACAGCAGAATGTACAACAGTATAG 57.166 36.000 0.00 0.00 39.31 1.31
5348 11147 7.170393 ACAGCAGAATGTACAACAGTATAGA 57.830 36.000 0.00 0.00 39.31 1.98
5349 11148 7.261325 ACAGCAGAATGTACAACAGTATAGAG 58.739 38.462 0.00 0.00 39.31 2.43
5350 11149 7.122799 ACAGCAGAATGTACAACAGTATAGAGA 59.877 37.037 0.00 0.00 39.31 3.10
5351 11150 7.976175 CAGCAGAATGTACAACAGTATAGAGAA 59.024 37.037 0.00 0.00 39.31 2.87
5352 11151 7.976734 AGCAGAATGTACAACAGTATAGAGAAC 59.023 37.037 0.00 0.00 39.31 3.01
5353 11152 7.759886 GCAGAATGTACAACAGTATAGAGAACA 59.240 37.037 0.00 0.00 39.31 3.18
5354 11153 9.295214 CAGAATGTACAACAGTATAGAGAACAG 57.705 37.037 0.00 0.00 0.00 3.16
5355 11154 7.976734 AGAATGTACAACAGTATAGAGAACAGC 59.023 37.037 0.00 0.00 0.00 4.40
5356 11155 6.835819 TGTACAACAGTATAGAGAACAGCT 57.164 37.500 0.00 0.00 0.00 4.24
5357 11156 6.853720 TGTACAACAGTATAGAGAACAGCTC 58.146 40.000 0.00 0.00 44.29 4.09
5358 11157 5.331876 ACAACAGTATAGAGAACAGCTCC 57.668 43.478 0.00 0.00 45.10 4.70
5359 11158 4.160626 ACAACAGTATAGAGAACAGCTCCC 59.839 45.833 0.00 0.00 45.10 4.30
5360 11159 4.258457 ACAGTATAGAGAACAGCTCCCT 57.742 45.455 0.00 0.00 45.10 4.20
5361 11160 4.615513 ACAGTATAGAGAACAGCTCCCTT 58.384 43.478 0.00 0.00 45.10 3.95
5362 11161 4.647399 ACAGTATAGAGAACAGCTCCCTTC 59.353 45.833 0.00 0.00 45.10 3.46
5363 11162 4.646945 CAGTATAGAGAACAGCTCCCTTCA 59.353 45.833 0.00 0.00 45.10 3.02
5364 11163 5.304101 CAGTATAGAGAACAGCTCCCTTCAT 59.696 44.000 0.00 0.00 45.10 2.57
5365 11164 4.686191 ATAGAGAACAGCTCCCTTCATG 57.314 45.455 0.00 0.00 45.10 3.07
5366 11165 2.544721 AGAGAACAGCTCCCTTCATGA 58.455 47.619 0.00 0.00 45.10 3.07
5367 11166 2.235898 AGAGAACAGCTCCCTTCATGAC 59.764 50.000 0.00 0.00 45.10 3.06
5368 11167 2.235898 GAGAACAGCTCCCTTCATGACT 59.764 50.000 0.00 0.00 37.69 3.41
5369 11168 2.235898 AGAACAGCTCCCTTCATGACTC 59.764 50.000 0.00 0.00 0.00 3.36
5370 11169 1.649321 ACAGCTCCCTTCATGACTCA 58.351 50.000 0.00 0.00 0.00 3.41
5371 11170 1.277557 ACAGCTCCCTTCATGACTCAC 59.722 52.381 0.00 0.00 0.00 3.51
5372 11171 1.554160 CAGCTCCCTTCATGACTCACT 59.446 52.381 0.00 0.00 0.00 3.41
5373 11172 2.762887 CAGCTCCCTTCATGACTCACTA 59.237 50.000 0.00 0.00 0.00 2.74
5374 11173 3.387374 CAGCTCCCTTCATGACTCACTAT 59.613 47.826 0.00 0.00 0.00 2.12
5375 11174 4.036518 AGCTCCCTTCATGACTCACTATT 58.963 43.478 0.00 0.00 0.00 1.73
5376 11175 5.069648 CAGCTCCCTTCATGACTCACTATTA 59.930 44.000 0.00 0.00 0.00 0.98
5377 11176 5.843421 AGCTCCCTTCATGACTCACTATTAT 59.157 40.000 0.00 0.00 0.00 1.28
5378 11177 6.328672 AGCTCCCTTCATGACTCACTATTATT 59.671 38.462 0.00 0.00 0.00 1.40
5379 11178 7.510685 AGCTCCCTTCATGACTCACTATTATTA 59.489 37.037 0.00 0.00 0.00 0.98
5380 11179 8.317679 GCTCCCTTCATGACTCACTATTATTAT 58.682 37.037 0.00 0.00 0.00 1.28
5407 11206 5.445069 TCCAAAAACAATGGAGAAGAGACA 58.555 37.500 0.00 0.00 41.98 3.41
5408 11207 6.070656 TCCAAAAACAATGGAGAAGAGACAT 58.929 36.000 0.00 0.00 41.98 3.06
5409 11208 6.207417 TCCAAAAACAATGGAGAAGAGACATC 59.793 38.462 0.00 0.00 41.98 3.06
5410 11209 6.016024 CCAAAAACAATGGAGAAGAGACATCA 60.016 38.462 0.00 0.00 40.56 3.07
5411 11210 7.309621 CCAAAAACAATGGAGAAGAGACATCAT 60.310 37.037 0.00 0.00 40.56 2.45
5412 11211 7.771927 AAAACAATGGAGAAGAGACATCATT 57.228 32.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.028130 TCCCAGGTCTTGTTGGAAAAAC 58.972 45.455 0.00 0.00 36.55 2.43
94 97 0.601576 TGTCGGTACTGCAACGCAAT 60.602 50.000 0.00 0.00 38.41 3.56
106 109 7.681939 AAAGATTAAAAGCTCATTGTCGGTA 57.318 32.000 0.00 0.00 0.00 4.02
119 122 8.801715 TTTCAGCTGCTACAAAAGATTAAAAG 57.198 30.769 9.47 0.00 0.00 2.27
121 124 7.382218 GCTTTTCAGCTGCTACAAAAGATTAAA 59.618 33.333 30.97 11.68 43.51 1.52
221 224 7.583860 TGTTTATTTCATGATGCAACATGTG 57.416 32.000 29.28 12.94 45.21 3.21
286 289 9.332502 TGAGTTAAGATTGCAGTAGTGTTTTTA 57.667 29.630 0.00 0.00 0.00 1.52
292 295 6.870965 AGACTTGAGTTAAGATTGCAGTAGTG 59.129 38.462 0.99 0.00 39.76 2.74
293 296 6.998802 AGACTTGAGTTAAGATTGCAGTAGT 58.001 36.000 0.99 0.00 39.76 2.73
294 297 9.593134 AATAGACTTGAGTTAAGATTGCAGTAG 57.407 33.333 0.99 0.00 39.76 2.57
295 298 9.944376 AAATAGACTTGAGTTAAGATTGCAGTA 57.056 29.630 0.99 0.00 39.76 2.74
296 299 8.854614 AAATAGACTTGAGTTAAGATTGCAGT 57.145 30.769 0.99 0.00 39.76 4.40
297 300 8.939929 TGAAATAGACTTGAGTTAAGATTGCAG 58.060 33.333 0.99 0.00 39.76 4.41
298 301 8.846943 TGAAATAGACTTGAGTTAAGATTGCA 57.153 30.769 0.99 0.00 39.76 4.08
299 302 8.940952 ACTGAAATAGACTTGAGTTAAGATTGC 58.059 33.333 0.99 0.00 39.76 3.56
301 304 8.940952 GCACTGAAATAGACTTGAGTTAAGATT 58.059 33.333 0.99 0.00 39.76 2.40
302 305 8.097038 TGCACTGAAATAGACTTGAGTTAAGAT 58.903 33.333 0.99 0.00 39.76 2.40
304 307 7.658179 TGCACTGAAATAGACTTGAGTTAAG 57.342 36.000 0.00 0.00 42.30 1.85
305 308 9.719355 TTATGCACTGAAATAGACTTGAGTTAA 57.281 29.630 0.00 0.00 0.00 2.01
306 309 9.371136 CTTATGCACTGAAATAGACTTGAGTTA 57.629 33.333 0.00 0.00 0.00 2.24
307 310 7.880195 ACTTATGCACTGAAATAGACTTGAGTT 59.120 33.333 0.00 0.00 0.00 3.01
308 311 7.390027 ACTTATGCACTGAAATAGACTTGAGT 58.610 34.615 0.00 0.00 0.00 3.41
309 312 7.840342 ACTTATGCACTGAAATAGACTTGAG 57.160 36.000 0.00 0.00 0.00 3.02
310 313 7.661437 ACAACTTATGCACTGAAATAGACTTGA 59.339 33.333 0.00 0.00 0.00 3.02
311 314 7.810658 ACAACTTATGCACTGAAATAGACTTG 58.189 34.615 0.00 0.00 0.00 3.16
312 315 7.986085 ACAACTTATGCACTGAAATAGACTT 57.014 32.000 0.00 0.00 0.00 3.01
313 316 8.531982 TCTACAACTTATGCACTGAAATAGACT 58.468 33.333 0.00 0.00 0.00 3.24
314 317 8.596380 GTCTACAACTTATGCACTGAAATAGAC 58.404 37.037 0.00 0.00 0.00 2.59
315 318 7.488150 CGTCTACAACTTATGCACTGAAATAGA 59.512 37.037 0.00 0.00 0.00 1.98
316 319 7.254117 CCGTCTACAACTTATGCACTGAAATAG 60.254 40.741 0.00 0.00 0.00 1.73
317 320 6.533723 CCGTCTACAACTTATGCACTGAAATA 59.466 38.462 0.00 0.00 0.00 1.40
318 321 5.351465 CCGTCTACAACTTATGCACTGAAAT 59.649 40.000 0.00 0.00 0.00 2.17
319 322 4.688879 CCGTCTACAACTTATGCACTGAAA 59.311 41.667 0.00 0.00 0.00 2.69
320 323 4.021807 TCCGTCTACAACTTATGCACTGAA 60.022 41.667 0.00 0.00 0.00 3.02
321 324 3.508402 TCCGTCTACAACTTATGCACTGA 59.492 43.478 0.00 0.00 0.00 3.41
322 325 3.845178 TCCGTCTACAACTTATGCACTG 58.155 45.455 0.00 0.00 0.00 3.66
323 326 4.219944 TCTTCCGTCTACAACTTATGCACT 59.780 41.667 0.00 0.00 0.00 4.40
324 327 4.326548 GTCTTCCGTCTACAACTTATGCAC 59.673 45.833 0.00 0.00 0.00 4.57
325 328 4.021807 TGTCTTCCGTCTACAACTTATGCA 60.022 41.667 0.00 0.00 0.00 3.96
326 329 4.491676 TGTCTTCCGTCTACAACTTATGC 58.508 43.478 0.00 0.00 0.00 3.14
327 330 6.089551 CACTTGTCTTCCGTCTACAACTTATG 59.910 42.308 0.00 0.00 0.00 1.90
328 331 6.157211 CACTTGTCTTCCGTCTACAACTTAT 58.843 40.000 0.00 0.00 0.00 1.73
329 332 5.068198 ACACTTGTCTTCCGTCTACAACTTA 59.932 40.000 0.00 0.00 0.00 2.24
330 333 4.142004 ACACTTGTCTTCCGTCTACAACTT 60.142 41.667 0.00 0.00 0.00 2.66
331 334 3.383825 ACACTTGTCTTCCGTCTACAACT 59.616 43.478 0.00 0.00 0.00 3.16
332 335 3.489785 CACACTTGTCTTCCGTCTACAAC 59.510 47.826 0.00 0.00 0.00 3.32
333 336 3.382227 TCACACTTGTCTTCCGTCTACAA 59.618 43.478 0.00 0.00 0.00 2.41
334 337 2.953648 TCACACTTGTCTTCCGTCTACA 59.046 45.455 0.00 0.00 0.00 2.74
335 338 3.637998 TCACACTTGTCTTCCGTCTAC 57.362 47.619 0.00 0.00 0.00 2.59
336 339 4.142116 TGTTTCACACTTGTCTTCCGTCTA 60.142 41.667 0.00 0.00 0.00 2.59
337 340 3.195661 GTTTCACACTTGTCTTCCGTCT 58.804 45.455 0.00 0.00 0.00 4.18
338 341 2.933906 TGTTTCACACTTGTCTTCCGTC 59.066 45.455 0.00 0.00 0.00 4.79
339 342 2.980568 TGTTTCACACTTGTCTTCCGT 58.019 42.857 0.00 0.00 0.00 4.69
340 343 4.376008 CGTATGTTTCACACTTGTCTTCCG 60.376 45.833 0.00 0.00 0.00 4.30
341 344 4.748102 TCGTATGTTTCACACTTGTCTTCC 59.252 41.667 0.00 0.00 0.00 3.46
342 345 5.462398 ACTCGTATGTTTCACACTTGTCTTC 59.538 40.000 0.00 0.00 0.00 2.87
343 346 5.357257 ACTCGTATGTTTCACACTTGTCTT 58.643 37.500 0.00 0.00 0.00 3.01
344 347 4.945246 ACTCGTATGTTTCACACTTGTCT 58.055 39.130 0.00 0.00 0.00 3.41
345 348 4.982916 AGACTCGTATGTTTCACACTTGTC 59.017 41.667 0.00 0.00 0.00 3.18
346 349 4.945246 AGACTCGTATGTTTCACACTTGT 58.055 39.130 0.00 0.00 0.00 3.16
347 350 5.333339 CCAAGACTCGTATGTTTCACACTTG 60.333 44.000 0.00 0.00 0.00 3.16
348 351 4.750098 CCAAGACTCGTATGTTTCACACTT 59.250 41.667 0.00 0.00 0.00 3.16
349 352 4.307432 CCAAGACTCGTATGTTTCACACT 58.693 43.478 0.00 0.00 0.00 3.55
350 353 3.432252 CCCAAGACTCGTATGTTTCACAC 59.568 47.826 0.00 0.00 0.00 3.82
351 354 3.556213 CCCCAAGACTCGTATGTTTCACA 60.556 47.826 0.00 0.00 0.00 3.58
352 355 3.000727 CCCCAAGACTCGTATGTTTCAC 58.999 50.000 0.00 0.00 0.00 3.18
353 356 2.635915 ACCCCAAGACTCGTATGTTTCA 59.364 45.455 0.00 0.00 0.00 2.69
354 357 3.259902 GACCCCAAGACTCGTATGTTTC 58.740 50.000 0.00 0.00 0.00 2.78
355 358 2.635915 TGACCCCAAGACTCGTATGTTT 59.364 45.455 0.00 0.00 0.00 2.83
356 359 2.253610 TGACCCCAAGACTCGTATGTT 58.746 47.619 0.00 0.00 0.00 2.71
357 360 1.933021 TGACCCCAAGACTCGTATGT 58.067 50.000 0.00 0.00 0.00 2.29
368 371 2.091610 TCACACAAATCCTTGACCCCAA 60.092 45.455 0.00 0.00 36.33 4.12
369 372 1.496857 TCACACAAATCCTTGACCCCA 59.503 47.619 0.00 0.00 36.33 4.96
370 373 2.286365 TCACACAAATCCTTGACCCC 57.714 50.000 0.00 0.00 36.33 4.95
371 374 2.296190 GGTTCACACAAATCCTTGACCC 59.704 50.000 0.00 0.00 36.33 4.46
372 375 2.955660 TGGTTCACACAAATCCTTGACC 59.044 45.455 0.00 0.00 36.33 4.02
384 387 2.098934 TGCACTGAATTGTGGTTCACAC 59.901 45.455 0.00 0.00 44.47 3.82
385 388 2.373224 TGCACTGAATTGTGGTTCACA 58.627 42.857 0.00 0.00 43.02 3.58
386 389 3.648339 ATGCACTGAATTGTGGTTCAC 57.352 42.857 0.00 0.00 38.31 3.18
387 390 4.826733 ACTTATGCACTGAATTGTGGTTCA 59.173 37.500 0.00 0.00 38.31 3.18
388 391 5.376854 ACTTATGCACTGAATTGTGGTTC 57.623 39.130 0.00 0.00 38.31 3.62
389 392 5.531634 CAACTTATGCACTGAATTGTGGTT 58.468 37.500 0.00 0.00 38.31 3.67
390 393 5.125100 CAACTTATGCACTGAATTGTGGT 57.875 39.130 0.00 0.00 38.31 4.16
404 407 2.513753 TGTTGACCCCAGCAACTTATG 58.486 47.619 0.00 0.00 44.43 1.90
405 408 2.969821 TGTTGACCCCAGCAACTTAT 57.030 45.000 0.00 0.00 44.43 1.73
406 409 2.173782 TCTTGTTGACCCCAGCAACTTA 59.826 45.455 0.00 0.00 44.43 2.24
407 410 1.064017 TCTTGTTGACCCCAGCAACTT 60.064 47.619 0.00 0.00 44.43 2.66
408 411 0.550914 TCTTGTTGACCCCAGCAACT 59.449 50.000 0.00 0.00 44.43 3.16
409 412 0.668535 GTCTTGTTGACCCCAGCAAC 59.331 55.000 0.00 0.00 44.40 4.17
410 413 0.550914 AGTCTTGTTGACCCCAGCAA 59.449 50.000 0.00 0.00 46.46 3.91
411 414 0.550914 AAGTCTTGTTGACCCCAGCA 59.449 50.000 0.00 0.00 46.46 4.41
412 415 0.954452 CAAGTCTTGTTGACCCCAGC 59.046 55.000 4.27 0.00 46.46 4.85
413 416 1.609208 CCAAGTCTTGTTGACCCCAG 58.391 55.000 11.61 0.00 46.46 4.45
414 417 0.184933 CCCAAGTCTTGTTGACCCCA 59.815 55.000 11.61 0.00 46.46 4.96
415 418 0.539669 CCCCAAGTCTTGTTGACCCC 60.540 60.000 11.61 0.00 46.46 4.95
416 419 0.185175 ACCCCAAGTCTTGTTGACCC 59.815 55.000 11.61 0.00 46.46 4.46
417 420 1.133915 TGACCCCAAGTCTTGTTGACC 60.134 52.381 11.61 0.00 46.46 4.02
418 421 2.341846 TGACCCCAAGTCTTGTTGAC 57.658 50.000 11.61 3.57 46.46 3.18
419 422 3.117701 TCATTGACCCCAAGTCTTGTTGA 60.118 43.478 11.61 1.15 46.46 3.18
420 423 3.221771 TCATTGACCCCAAGTCTTGTTG 58.778 45.455 11.61 4.68 46.46 3.33
421 424 3.593442 TCATTGACCCCAAGTCTTGTT 57.407 42.857 11.61 0.00 46.46 2.83
422 425 3.814504 ATCATTGACCCCAAGTCTTGT 57.185 42.857 11.61 0.00 46.46 3.16
423 426 5.124457 CACTAATCATTGACCCCAAGTCTTG 59.876 44.000 5.53 5.53 46.46 3.02
424 427 5.222130 ACACTAATCATTGACCCCAAGTCTT 60.222 40.000 0.00 0.00 46.46 3.01
425 428 4.289672 ACACTAATCATTGACCCCAAGTCT 59.710 41.667 0.00 0.00 46.46 3.24
426 429 4.396166 CACACTAATCATTGACCCCAAGTC 59.604 45.833 0.00 0.00 46.51 3.01
427 430 4.042809 TCACACTAATCATTGACCCCAAGT 59.957 41.667 0.00 0.00 35.48 3.16
428 431 4.588899 TCACACTAATCATTGACCCCAAG 58.411 43.478 0.00 0.00 35.48 3.61
429 432 4.649267 TCACACTAATCATTGACCCCAA 57.351 40.909 0.00 0.00 36.61 4.12
430 433 4.331968 GTTCACACTAATCATTGACCCCA 58.668 43.478 0.00 0.00 0.00 4.96
431 434 3.694566 GGTTCACACTAATCATTGACCCC 59.305 47.826 0.00 0.00 0.00 4.95
432 435 4.156008 GTGGTTCACACTAATCATTGACCC 59.844 45.833 0.00 0.00 46.72 4.46
433 436 5.296813 GTGGTTCACACTAATCATTGACC 57.703 43.478 0.00 0.00 46.72 4.02
443 446 9.924896 TTCAGTGTTGAATCGTGGTTCACACTA 62.925 40.741 20.40 10.85 42.12 2.74
445 448 2.612212 AGTGTTGAATCGTGGTTCACAC 59.388 45.455 14.95 14.95 46.78 3.82
446 449 2.611751 CAGTGTTGAATCGTGGTTCACA 59.388 45.455 0.00 0.00 37.80 3.58
447 450 2.869801 TCAGTGTTGAATCGTGGTTCAC 59.130 45.455 0.00 0.00 37.80 3.18
448 451 3.186702 TCAGTGTTGAATCGTGGTTCA 57.813 42.857 0.00 0.00 36.38 3.18
449 452 3.807622 TCTTCAGTGTTGAATCGTGGTTC 59.192 43.478 0.00 0.00 42.19 3.62
450 453 3.804036 TCTTCAGTGTTGAATCGTGGTT 58.196 40.909 0.00 0.00 42.19 3.67
451 454 3.469008 TCTTCAGTGTTGAATCGTGGT 57.531 42.857 0.00 0.00 42.19 4.16
452 455 5.362556 AATTCTTCAGTGTTGAATCGTGG 57.637 39.130 11.58 0.00 42.19 4.94
453 456 5.049474 TGGAATTCTTCAGTGTTGAATCGTG 60.049 40.000 5.23 0.00 42.19 4.35
454 457 5.063204 TGGAATTCTTCAGTGTTGAATCGT 58.937 37.500 5.23 1.43 42.19 3.73
455 458 5.611796 TGGAATTCTTCAGTGTTGAATCG 57.388 39.130 5.23 0.00 42.19 3.34
456 459 5.048504 TGCTGGAATTCTTCAGTGTTGAATC 60.049 40.000 5.23 7.32 42.19 2.52
457 460 4.828939 TGCTGGAATTCTTCAGTGTTGAAT 59.171 37.500 5.23 7.28 42.19 2.57
458 461 4.036734 GTGCTGGAATTCTTCAGTGTTGAA 59.963 41.667 5.23 0.00 40.92 2.69
459 462 3.565482 GTGCTGGAATTCTTCAGTGTTGA 59.435 43.478 5.23 0.00 33.81 3.18
460 463 3.607775 CGTGCTGGAATTCTTCAGTGTTG 60.608 47.826 5.23 0.00 33.81 3.33
461 464 2.549754 CGTGCTGGAATTCTTCAGTGTT 59.450 45.455 5.23 0.00 33.81 3.32
462 465 2.146342 CGTGCTGGAATTCTTCAGTGT 58.854 47.619 5.23 0.00 33.81 3.55
463 466 1.466167 CCGTGCTGGAATTCTTCAGTG 59.534 52.381 5.23 0.84 42.00 3.66
464 467 1.347707 TCCGTGCTGGAATTCTTCAGT 59.652 47.619 5.23 0.00 46.38 3.41
465 468 2.099141 TCCGTGCTGGAATTCTTCAG 57.901 50.000 5.23 6.39 46.38 3.02
487 490 4.098044 TGCAACGACAAATAGTGGGAAAAA 59.902 37.500 0.00 0.00 0.00 1.94
488 491 3.632604 TGCAACGACAAATAGTGGGAAAA 59.367 39.130 0.00 0.00 0.00 2.29
489 492 3.215151 TGCAACGACAAATAGTGGGAAA 58.785 40.909 0.00 0.00 0.00 3.13
490 493 2.852449 TGCAACGACAAATAGTGGGAA 58.148 42.857 0.00 0.00 0.00 3.97
491 494 2.552599 TGCAACGACAAATAGTGGGA 57.447 45.000 0.00 0.00 0.00 4.37
492 495 3.057596 ACAATGCAACGACAAATAGTGGG 60.058 43.478 0.00 0.00 0.00 4.61
493 496 3.913763 CACAATGCAACGACAAATAGTGG 59.086 43.478 0.00 0.00 0.00 4.00
494 497 4.536065 ACACAATGCAACGACAAATAGTG 58.464 39.130 0.00 0.00 0.00 2.74
495 498 4.274705 TGACACAATGCAACGACAAATAGT 59.725 37.500 0.00 0.00 0.00 2.12
496 499 4.612614 GTGACACAATGCAACGACAAATAG 59.387 41.667 0.00 0.00 0.00 1.73
497 500 4.532276 GTGACACAATGCAACGACAAATA 58.468 39.130 0.00 0.00 0.00 1.40
535 538 7.156673 GGTACATGGAACCGAATAATTAGCTA 58.843 38.462 0.00 0.00 0.00 3.32
542 5271 4.938832 CAGTTGGTACATGGAACCGAATAA 59.061 41.667 10.23 0.00 40.08 1.40
547 5276 2.465860 TCAGTTGGTACATGGAACCG 57.534 50.000 13.12 1.76 40.08 4.44
705 5435 4.937620 ACAACTTATGCACTGTATGGACTG 59.062 41.667 0.00 0.00 0.00 3.51
766 5498 2.032071 AAAGAGGTTCCCACGGCG 59.968 61.111 4.80 4.80 0.00 6.46
814 5571 4.513318 CCTCTATTTTCTTTCCTCATCCGC 59.487 45.833 0.00 0.00 0.00 5.54
817 5574 6.352516 TCTGCCTCTATTTTCTTTCCTCATC 58.647 40.000 0.00 0.00 0.00 2.92
872 5701 2.363683 GCTGATTGGAAGCTGCTACTT 58.636 47.619 0.90 0.00 37.69 2.24
1010 5861 3.244976 GAAGATGGCATTTTGTTGTCCG 58.755 45.455 8.12 0.00 0.00 4.79
1039 5890 1.251251 AGGCAGAGGAACAACAATGC 58.749 50.000 0.00 0.00 0.00 3.56
1130 5984 2.970324 GGAGCGCCGTGTGTTGAA 60.970 61.111 2.29 0.00 0.00 2.69
1143 5997 2.293170 GTAGCTTTCCAATGGAGGAGC 58.707 52.381 23.62 23.62 40.55 4.70
1152 6006 2.034558 GCTTGCAAGTGTAGCTTTCCAA 59.965 45.455 26.55 0.00 34.69 3.53
1664 6519 3.602483 GGTATCAAACCGCTTAAGGTGA 58.398 45.455 4.29 0.00 45.21 4.02
2133 7132 8.921205 AGGTGTAGTAGTAATAGGTTGGTAATG 58.079 37.037 0.00 0.00 0.00 1.90
2210 7425 6.814506 ATATATGCAGTTCTTGGATGCTTC 57.185 37.500 0.00 0.00 38.43 3.86
2631 7850 6.757478 GCTCTACTAGGTTGGACAATTTAGAC 59.243 42.308 0.00 0.00 0.00 2.59
2667 7886 4.148079 TCTCACCGCTGAGATGATTAGAT 58.852 43.478 6.33 0.00 46.79 1.98
2793 8012 6.154534 TGTTCCCAGATATATCAAGGTATCCG 59.845 42.308 15.08 3.98 0.00 4.18
3277 8499 1.961793 CTGAAACCCACCACGAGAAA 58.038 50.000 0.00 0.00 0.00 2.52
3282 8504 0.039256 CAATGCTGAAACCCACCACG 60.039 55.000 0.00 0.00 0.00 4.94
3438 8660 4.972201 ACTTATCGTCGAAGTCTTCTGTC 58.028 43.478 10.81 2.32 31.36 3.51
3545 8767 1.045911 ATCCAGCTCCTCTTCGGTCC 61.046 60.000 0.00 0.00 0.00 4.46
3689 8914 2.610859 TCCTGTGGAGGCTTCCCC 60.611 66.667 13.07 0.34 43.33 4.81
3801 9026 6.747414 TGTATTATAGGTGGACTGCATTCT 57.253 37.500 3.88 0.00 0.00 2.40
3822 9047 2.351253 GCTGCTCGTGATATCTCGATGT 60.351 50.000 25.18 0.00 40.40 3.06
3859 9084 3.631250 AGACAAAAGCCTTGAAGGTTGA 58.369 40.909 16.94 0.00 37.80 3.18
4209 9448 4.651008 TGGTGTCGTCGGCCGTTC 62.651 66.667 27.15 18.15 37.94 3.95
4264 9503 0.320160 CAAGCAAGAAAAGGCCAGCC 60.320 55.000 5.01 0.00 0.00 4.85
4475 10213 6.942163 ATATAGGTGGCATATGAGTGACTT 57.058 37.500 6.97 0.00 0.00 3.01
4619 10360 1.892209 AGAACACGGGACACCAATTC 58.108 50.000 0.00 0.00 36.13 2.17
4758 10534 2.549754 CCGAAAGAAAGTGTCACATGCT 59.450 45.455 5.62 0.00 0.00 3.79
4818 10602 5.173246 ACAATATGGGATGGAGGGAGTAAT 58.827 41.667 0.00 0.00 0.00 1.89
4821 10605 3.080660 ACAATATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
4822 10606 4.846367 TCTTACAATATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
4823 10607 4.597507 GTCTTACAATATGGGATGGAGGGA 59.402 45.833 0.00 0.00 0.00 4.20
4824 10608 4.563580 CGTCTTACAATATGGGATGGAGGG 60.564 50.000 0.00 0.00 0.00 4.30
4825 10609 4.040461 ACGTCTTACAATATGGGATGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
4826 10610 5.215252 ACGTCTTACAATATGGGATGGAG 57.785 43.478 0.00 0.00 0.00 3.86
4827 10611 5.623956 AACGTCTTACAATATGGGATGGA 57.376 39.130 0.00 0.00 0.00 3.41
4828 10612 6.693315 AAAACGTCTTACAATATGGGATGG 57.307 37.500 0.00 0.00 0.00 3.51
4933 10717 6.400568 TGGATTCCAATTTTTCATCTTCAGC 58.599 36.000 1.94 0.00 0.00 4.26
5034 10818 7.186128 TGTTTACGTGATATCATTGTGATTGC 58.814 34.615 18.61 8.54 38.26 3.56
5051 10849 6.801539 ACATTCATCTGTTCATGTTTACGT 57.198 33.333 0.00 0.00 0.00 3.57
5080 10879 0.391228 TTGACGCACCTAACTCTGCA 59.609 50.000 0.00 0.00 32.57 4.41
5143 10942 3.655211 CTCCTGCCCTGCAACCCT 61.655 66.667 0.00 0.00 38.41 4.34
5150 10949 0.755686 GACCTCATACTCCTGCCCTG 59.244 60.000 0.00 0.00 0.00 4.45
5166 10965 3.745797 GCTCCATCATAAGGACAAGGACC 60.746 52.174 0.00 0.00 0.00 4.46
5216 11015 4.881850 GTGTATGTTGTTCCATCCTAAGGG 59.118 45.833 0.00 0.00 0.00 3.95
5235 11034 8.026607 GCTAACCAATGCTTGAAATAAAGTGTA 58.973 33.333 0.00 0.00 0.00 2.90
5237 11036 6.033831 CGCTAACCAATGCTTGAAATAAAGTG 59.966 38.462 0.00 0.00 0.00 3.16
5239 11038 6.321717 TCGCTAACCAATGCTTGAAATAAAG 58.678 36.000 0.00 0.00 0.00 1.85
5244 11043 3.407698 TCTCGCTAACCAATGCTTGAAA 58.592 40.909 0.00 0.00 0.00 2.69
5245 11044 3.052455 TCTCGCTAACCAATGCTTGAA 57.948 42.857 0.00 0.00 0.00 2.69
5246 11045 2.760634 TCTCGCTAACCAATGCTTGA 57.239 45.000 0.00 0.00 0.00 3.02
5247 11046 3.374988 TCATTCTCGCTAACCAATGCTTG 59.625 43.478 0.00 0.00 0.00 4.01
5248 11047 3.375299 GTCATTCTCGCTAACCAATGCTT 59.625 43.478 0.00 0.00 0.00 3.91
5249 11048 2.939103 GTCATTCTCGCTAACCAATGCT 59.061 45.455 0.00 0.00 0.00 3.79
5250 11049 2.677836 TGTCATTCTCGCTAACCAATGC 59.322 45.455 0.00 0.00 0.00 3.56
5251 11050 4.260907 CCATGTCATTCTCGCTAACCAATG 60.261 45.833 0.00 0.00 0.00 2.82
5252 11051 3.879295 CCATGTCATTCTCGCTAACCAAT 59.121 43.478 0.00 0.00 0.00 3.16
5253 11052 3.055458 TCCATGTCATTCTCGCTAACCAA 60.055 43.478 0.00 0.00 0.00 3.67
5254 11053 2.499693 TCCATGTCATTCTCGCTAACCA 59.500 45.455 0.00 0.00 0.00 3.67
5255 11054 3.179443 TCCATGTCATTCTCGCTAACC 57.821 47.619 0.00 0.00 0.00 2.85
5256 11055 3.932710 TGTTCCATGTCATTCTCGCTAAC 59.067 43.478 0.00 0.00 0.00 2.34
5257 11056 4.200838 TGTTCCATGTCATTCTCGCTAA 57.799 40.909 0.00 0.00 0.00 3.09
5258 11057 3.885724 TGTTCCATGTCATTCTCGCTA 57.114 42.857 0.00 0.00 0.00 4.26
5259 11058 2.744202 GTTGTTCCATGTCATTCTCGCT 59.256 45.455 0.00 0.00 0.00 4.93
5260 11059 2.744202 AGTTGTTCCATGTCATTCTCGC 59.256 45.455 0.00 0.00 0.00 5.03
5261 11060 4.568359 CCTAGTTGTTCCATGTCATTCTCG 59.432 45.833 0.00 0.00 0.00 4.04
5262 11061 5.491982 ACCTAGTTGTTCCATGTCATTCTC 58.508 41.667 0.00 0.00 0.00 2.87
5263 11062 5.505181 ACCTAGTTGTTCCATGTCATTCT 57.495 39.130 0.00 0.00 0.00 2.40
5264 11063 5.585047 GGTACCTAGTTGTTCCATGTCATTC 59.415 44.000 4.06 0.00 0.00 2.67
5265 11064 5.013704 TGGTACCTAGTTGTTCCATGTCATT 59.986 40.000 14.36 0.00 31.59 2.57
5266 11065 4.534500 TGGTACCTAGTTGTTCCATGTCAT 59.466 41.667 14.36 0.00 31.59 3.06
5267 11066 3.904965 TGGTACCTAGTTGTTCCATGTCA 59.095 43.478 14.36 0.00 31.59 3.58
5268 11067 4.546829 TGGTACCTAGTTGTTCCATGTC 57.453 45.455 14.36 0.00 31.59 3.06
5269 11068 4.986054 TTGGTACCTAGTTGTTCCATGT 57.014 40.909 14.36 0.00 35.87 3.21
5270 11069 6.834168 AAATTGGTACCTAGTTGTTCCATG 57.166 37.500 14.36 0.00 35.87 3.66
5271 11070 8.168058 AGTTAAATTGGTACCTAGTTGTTCCAT 58.832 33.333 17.43 0.00 35.87 3.41
5272 11071 7.519927 AGTTAAATTGGTACCTAGTTGTTCCA 58.480 34.615 17.43 0.00 34.33 3.53
5273 11072 7.662669 TGAGTTAAATTGGTACCTAGTTGTTCC 59.337 37.037 17.43 6.59 0.00 3.62
5274 11073 8.611654 TGAGTTAAATTGGTACCTAGTTGTTC 57.388 34.615 17.43 12.28 0.00 3.18
5275 11074 7.174426 GCTGAGTTAAATTGGTACCTAGTTGTT 59.826 37.037 17.43 4.58 0.00 2.83
5276 11075 6.653740 GCTGAGTTAAATTGGTACCTAGTTGT 59.346 38.462 17.43 3.95 0.00 3.32
5277 11076 6.879458 AGCTGAGTTAAATTGGTACCTAGTTG 59.121 38.462 17.43 2.81 0.00 3.16
5278 11077 7.017319 AGCTGAGTTAAATTGGTACCTAGTT 57.983 36.000 14.36 13.77 0.00 2.24
5279 11078 6.622427 AGCTGAGTTAAATTGGTACCTAGT 57.378 37.500 14.36 1.03 0.00 2.57
5280 11079 7.707035 CACTAGCTGAGTTAAATTGGTACCTAG 59.293 40.741 14.36 3.65 35.64 3.02
5281 11080 7.553334 CACTAGCTGAGTTAAATTGGTACCTA 58.447 38.462 14.36 5.86 35.64 3.08
5282 11081 6.407202 CACTAGCTGAGTTAAATTGGTACCT 58.593 40.000 14.36 0.00 35.64 3.08
5283 11082 5.064834 GCACTAGCTGAGTTAAATTGGTACC 59.935 44.000 4.43 4.43 35.64 3.34
5284 11083 5.642063 TGCACTAGCTGAGTTAAATTGGTAC 59.358 40.000 0.00 0.00 42.74 3.34
5285 11084 5.800296 TGCACTAGCTGAGTTAAATTGGTA 58.200 37.500 0.00 0.00 42.74 3.25
5286 11085 4.651778 TGCACTAGCTGAGTTAAATTGGT 58.348 39.130 0.00 0.00 42.74 3.67
5287 11086 5.627499 TTGCACTAGCTGAGTTAAATTGG 57.373 39.130 0.00 0.00 42.74 3.16
5288 11087 6.744537 GTGATTGCACTAGCTGAGTTAAATTG 59.255 38.462 0.00 0.00 41.84 2.32
5289 11088 6.430925 TGTGATTGCACTAGCTGAGTTAAATT 59.569 34.615 0.00 0.00 45.36 1.82
5290 11089 5.939883 TGTGATTGCACTAGCTGAGTTAAAT 59.060 36.000 0.00 0.00 45.36 1.40
5291 11090 5.179368 GTGTGATTGCACTAGCTGAGTTAAA 59.821 40.000 0.00 0.00 45.36 1.52
5292 11091 4.690748 GTGTGATTGCACTAGCTGAGTTAA 59.309 41.667 0.00 0.00 45.36 2.01
5293 11092 4.245660 GTGTGATTGCACTAGCTGAGTTA 58.754 43.478 0.00 0.00 45.36 2.24
5294 11093 3.070018 GTGTGATTGCACTAGCTGAGTT 58.930 45.455 0.00 0.00 45.36 3.01
5295 11094 2.037641 TGTGTGATTGCACTAGCTGAGT 59.962 45.455 0.00 0.00 45.36 3.41
5296 11095 2.414481 GTGTGTGATTGCACTAGCTGAG 59.586 50.000 0.00 0.00 45.36 3.35
5297 11096 2.224257 TGTGTGTGATTGCACTAGCTGA 60.224 45.455 0.00 0.00 45.36 4.26
5298 11097 2.145536 TGTGTGTGATTGCACTAGCTG 58.854 47.619 0.00 0.00 45.36 4.24
5299 11098 2.549064 TGTGTGTGATTGCACTAGCT 57.451 45.000 0.00 0.00 45.36 3.32
5300 11099 2.730090 GCATGTGTGTGATTGCACTAGC 60.730 50.000 0.00 0.00 45.36 3.42
5301 11100 2.745821 AGCATGTGTGTGATTGCACTAG 59.254 45.455 0.00 0.00 45.36 2.57
5302 11101 2.781923 AGCATGTGTGTGATTGCACTA 58.218 42.857 0.00 0.00 45.36 2.74
5303 11102 1.612676 AGCATGTGTGTGATTGCACT 58.387 45.000 0.00 0.00 45.36 4.40
5304 11103 3.236816 GTTAGCATGTGTGTGATTGCAC 58.763 45.455 0.00 0.00 45.35 4.57
5305 11104 2.883386 TGTTAGCATGTGTGTGATTGCA 59.117 40.909 0.00 0.00 37.56 4.08
5306 11105 3.495193 CTGTTAGCATGTGTGTGATTGC 58.505 45.455 0.00 0.00 35.34 3.56
5307 11106 3.495193 GCTGTTAGCATGTGTGTGATTG 58.505 45.455 0.00 0.00 41.89 2.67
5308 11107 3.837213 GCTGTTAGCATGTGTGTGATT 57.163 42.857 0.00 0.00 41.89 2.57
5320 11119 4.452455 ACTGTTGTACATTCTGCTGTTAGC 59.548 41.667 0.00 0.00 42.82 3.09
5321 11120 7.834068 ATACTGTTGTACATTCTGCTGTTAG 57.166 36.000 0.00 0.00 0.00 2.34
5322 11121 8.745590 TCTATACTGTTGTACATTCTGCTGTTA 58.254 33.333 0.00 0.00 0.00 2.41
5323 11122 7.611770 TCTATACTGTTGTACATTCTGCTGTT 58.388 34.615 0.00 0.00 0.00 3.16
5324 11123 7.122799 TCTCTATACTGTTGTACATTCTGCTGT 59.877 37.037 0.00 0.00 0.00 4.40
5325 11124 7.484140 TCTCTATACTGTTGTACATTCTGCTG 58.516 38.462 0.00 0.00 0.00 4.41
5326 11125 7.646548 TCTCTATACTGTTGTACATTCTGCT 57.353 36.000 0.00 0.00 0.00 4.24
5327 11126 7.759886 TGTTCTCTATACTGTTGTACATTCTGC 59.240 37.037 0.00 0.00 0.00 4.26
5328 11127 9.295214 CTGTTCTCTATACTGTTGTACATTCTG 57.705 37.037 0.00 0.39 0.00 3.02
5329 11128 7.976734 GCTGTTCTCTATACTGTTGTACATTCT 59.023 37.037 0.00 0.00 0.00 2.40
5330 11129 7.976734 AGCTGTTCTCTATACTGTTGTACATTC 59.023 37.037 0.00 0.00 0.00 2.67
5331 11130 7.841956 AGCTGTTCTCTATACTGTTGTACATT 58.158 34.615 0.00 0.00 0.00 2.71
5332 11131 7.411486 AGCTGTTCTCTATACTGTTGTACAT 57.589 36.000 0.00 0.00 0.00 2.29
5333 11132 6.127703 GGAGCTGTTCTCTATACTGTTGTACA 60.128 42.308 0.00 0.00 41.60 2.90
5334 11133 6.267070 GGAGCTGTTCTCTATACTGTTGTAC 58.733 44.000 0.00 0.00 41.60 2.90
5335 11134 5.360144 GGGAGCTGTTCTCTATACTGTTGTA 59.640 44.000 0.00 0.00 41.60 2.41
5336 11135 4.160626 GGGAGCTGTTCTCTATACTGTTGT 59.839 45.833 0.00 0.00 41.60 3.32
5337 11136 4.404073 AGGGAGCTGTTCTCTATACTGTTG 59.596 45.833 0.00 0.00 41.60 3.33
5338 11137 4.615513 AGGGAGCTGTTCTCTATACTGTT 58.384 43.478 0.00 0.00 41.60 3.16
5339 11138 4.258457 AGGGAGCTGTTCTCTATACTGT 57.742 45.455 0.00 0.00 41.60 3.55
5340 11139 4.646945 TGAAGGGAGCTGTTCTCTATACTG 59.353 45.833 0.00 0.00 34.76 2.74
5341 11140 4.873010 TGAAGGGAGCTGTTCTCTATACT 58.127 43.478 0.00 0.00 34.76 2.12
5342 11141 5.303078 TCATGAAGGGAGCTGTTCTCTATAC 59.697 44.000 0.00 0.00 34.76 1.47
5343 11142 5.303078 GTCATGAAGGGAGCTGTTCTCTATA 59.697 44.000 0.00 0.00 34.76 1.31
5344 11143 4.100808 GTCATGAAGGGAGCTGTTCTCTAT 59.899 45.833 0.00 0.00 34.76 1.98
5345 11144 3.449018 GTCATGAAGGGAGCTGTTCTCTA 59.551 47.826 0.00 0.00 34.76 2.43
5346 11145 2.235898 GTCATGAAGGGAGCTGTTCTCT 59.764 50.000 0.00 0.00 38.68 3.10
5347 11146 2.235898 AGTCATGAAGGGAGCTGTTCTC 59.764 50.000 0.00 0.00 41.15 2.87
5348 11147 2.235898 GAGTCATGAAGGGAGCTGTTCT 59.764 50.000 0.00 0.00 0.00 3.01
5349 11148 2.027745 TGAGTCATGAAGGGAGCTGTTC 60.028 50.000 0.00 0.00 0.00 3.18
5350 11149 1.980765 TGAGTCATGAAGGGAGCTGTT 59.019 47.619 0.00 0.00 0.00 3.16
5351 11150 1.277557 GTGAGTCATGAAGGGAGCTGT 59.722 52.381 0.00 0.00 0.00 4.40
5352 11151 1.554160 AGTGAGTCATGAAGGGAGCTG 59.446 52.381 0.00 0.00 0.00 4.24
5353 11152 1.949799 AGTGAGTCATGAAGGGAGCT 58.050 50.000 0.00 0.00 0.00 4.09
5354 11153 4.414337 AATAGTGAGTCATGAAGGGAGC 57.586 45.455 0.00 0.00 0.00 4.70
5379 11178 9.312904 TCTCTTCTCCATTGTTTTTGGAATAAT 57.687 29.630 0.00 0.00 42.56 1.28
5380 11179 8.576442 GTCTCTTCTCCATTGTTTTTGGAATAA 58.424 33.333 0.00 0.00 42.56 1.40
5381 11180 7.723616 TGTCTCTTCTCCATTGTTTTTGGAATA 59.276 33.333 0.00 0.00 42.56 1.75
5382 11181 6.550854 TGTCTCTTCTCCATTGTTTTTGGAAT 59.449 34.615 0.00 0.00 42.56 3.01
5383 11182 5.890985 TGTCTCTTCTCCATTGTTTTTGGAA 59.109 36.000 0.00 0.00 42.56 3.53
5384 11183 5.445069 TGTCTCTTCTCCATTGTTTTTGGA 58.555 37.500 0.00 0.00 40.96 3.53
5385 11184 5.772825 TGTCTCTTCTCCATTGTTTTTGG 57.227 39.130 0.00 0.00 35.45 3.28
5386 11185 6.973843 TGATGTCTCTTCTCCATTGTTTTTG 58.026 36.000 0.00 0.00 0.00 2.44
5387 11186 7.771927 ATGATGTCTCTTCTCCATTGTTTTT 57.228 32.000 0.00 0.00 0.00 1.94
5388 11187 7.771927 AATGATGTCTCTTCTCCATTGTTTT 57.228 32.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.