Multiple sequence alignment - TraesCS1B01G479700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G479700 chr1B 100.000 3611 0 0 1 3611 687403215 687406825 0.000000e+00 6669.0
1 TraesCS1B01G479700 chr1B 100.000 33 0 0 2722 2754 583692378 583692346 1.080000e-05 62.1
2 TraesCS1B01G479700 chr1D 83.656 1964 156 82 693 2571 494140441 494142324 0.000000e+00 1696.0
3 TraesCS1B01G479700 chr1D 86.570 551 29 21 113 642 494139898 494140424 1.880000e-157 566.0
4 TraesCS1B01G479700 chr1D 80.987 547 21 35 3070 3606 494142407 494142880 1.230000e-94 357.0
5 TraesCS1B01G479700 chr1A 87.693 1357 54 29 1071 2423 592830232 592831479 0.000000e+00 1476.0
6 TraesCS1B01G479700 chr1A 77.578 446 41 31 2867 3302 592831806 592832202 7.850000e-52 215.0
7 TraesCS1B01G479700 chr1A 84.358 179 20 7 413 589 592829679 592829851 6.200000e-38 169.0
8 TraesCS1B01G479700 chr1A 83.030 165 10 7 277 423 592829496 592829660 2.260000e-27 134.0
9 TraesCS1B01G479700 chr1A 90.625 96 6 1 3465 3557 592832311 592832406 1.360000e-24 124.0
10 TraesCS1B01G479700 chr5B 89.336 919 64 23 990 1902 693010516 693009626 0.000000e+00 1123.0
11 TraesCS1B01G479700 chr5D 88.462 104 6 5 2968 3066 511221247 511221145 1.760000e-23 121.0
12 TraesCS1B01G479700 chr5D 84.298 121 2 2 2827 2947 511221343 511221240 6.380000e-18 102.0
13 TraesCS1B01G479700 chr7B 100.000 33 0 0 2722 2754 3345723 3345755 1.080000e-05 62.1
14 TraesCS1B01G479700 chr3B 100.000 32 0 0 2722 2753 763263189 763263220 3.890000e-05 60.2
15 TraesCS1B01G479700 chr6B 92.500 40 3 0 2722 2761 214031093 214031054 1.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G479700 chr1B 687403215 687406825 3610 False 6669.0 6669 100.000000 1 3611 1 chr1B.!!$F1 3610
1 TraesCS1B01G479700 chr1D 494139898 494142880 2982 False 873.0 1696 83.737667 113 3606 3 chr1D.!!$F1 3493
2 TraesCS1B01G479700 chr1A 592829496 592832406 2910 False 423.6 1476 84.656800 277 3557 5 chr1A.!!$F1 3280
3 TraesCS1B01G479700 chr5B 693009626 693010516 890 True 1123.0 1123 89.336000 990 1902 1 chr5B.!!$R1 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 967 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.0 11.41 0.0 38.33 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2729 3007 0.032267 CCCTCCGCTCCGATTTACTC 59.968 60.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.859165 TTTTTGCCAACCCAACAACA 57.141 40.000 0.00 0.00 0.00 3.33
25 26 2.100605 TTTTGCCAACCCAACAACAC 57.899 45.000 0.00 0.00 0.00 3.32
26 27 0.976641 TTTGCCAACCCAACAACACA 59.023 45.000 0.00 0.00 0.00 3.72
27 28 0.247736 TTGCCAACCCAACAACACAC 59.752 50.000 0.00 0.00 0.00 3.82
28 29 0.900182 TGCCAACCCAACAACACACA 60.900 50.000 0.00 0.00 0.00 3.72
29 30 0.459411 GCCAACCCAACAACACACAC 60.459 55.000 0.00 0.00 0.00 3.82
30 31 0.891373 CCAACCCAACAACACACACA 59.109 50.000 0.00 0.00 0.00 3.72
31 32 1.480137 CCAACCCAACAACACACACAT 59.520 47.619 0.00 0.00 0.00 3.21
32 33 2.481104 CCAACCCAACAACACACACATC 60.481 50.000 0.00 0.00 0.00 3.06
33 34 2.426738 CAACCCAACAACACACACATCT 59.573 45.455 0.00 0.00 0.00 2.90
34 35 2.733956 ACCCAACAACACACACATCTT 58.266 42.857 0.00 0.00 0.00 2.40
35 36 2.687935 ACCCAACAACACACACATCTTC 59.312 45.455 0.00 0.00 0.00 2.87
36 37 2.034558 CCCAACAACACACACATCTTCC 59.965 50.000 0.00 0.00 0.00 3.46
37 38 2.034558 CCAACAACACACACATCTTCCC 59.965 50.000 0.00 0.00 0.00 3.97
38 39 2.951642 CAACAACACACACATCTTCCCT 59.048 45.455 0.00 0.00 0.00 4.20
39 40 4.133820 CAACAACACACACATCTTCCCTA 58.866 43.478 0.00 0.00 0.00 3.53
40 41 4.008074 ACAACACACACATCTTCCCTAG 57.992 45.455 0.00 0.00 0.00 3.02
41 42 3.391296 ACAACACACACATCTTCCCTAGT 59.609 43.478 0.00 0.00 0.00 2.57
42 43 4.591498 ACAACACACACATCTTCCCTAGTA 59.409 41.667 0.00 0.00 0.00 1.82
43 44 5.248477 ACAACACACACATCTTCCCTAGTAT 59.752 40.000 0.00 0.00 0.00 2.12
44 45 6.439375 ACAACACACACATCTTCCCTAGTATA 59.561 38.462 0.00 0.00 0.00 1.47
45 46 6.716934 ACACACACATCTTCCCTAGTATAG 57.283 41.667 0.00 0.00 38.80 1.31
46 47 6.432581 ACACACACATCTTCCCTAGTATAGA 58.567 40.000 0.00 0.00 42.77 1.98
47 48 6.895756 ACACACACATCTTCCCTAGTATAGAA 59.104 38.462 0.00 0.00 42.77 2.10
48 49 7.399191 ACACACACATCTTCCCTAGTATAGAAA 59.601 37.037 0.00 0.00 42.77 2.52
49 50 8.258007 CACACACATCTTCCCTAGTATAGAAAA 58.742 37.037 0.00 0.00 42.77 2.29
50 51 8.258708 ACACACATCTTCCCTAGTATAGAAAAC 58.741 37.037 0.00 0.00 42.77 2.43
51 52 8.258007 CACACATCTTCCCTAGTATAGAAAACA 58.742 37.037 0.00 0.00 42.77 2.83
52 53 8.822805 ACACATCTTCCCTAGTATAGAAAACAA 58.177 33.333 0.00 0.00 42.77 2.83
53 54 9.667107 CACATCTTCCCTAGTATAGAAAACAAA 57.333 33.333 0.00 0.00 42.77 2.83
137 138 2.355197 CGGCCACAACAAGTCATCATA 58.645 47.619 2.24 0.00 0.00 2.15
148 149 5.586339 ACAAGTCATCATACATGAGACTCG 58.414 41.667 17.20 12.46 40.75 4.18
166 167 2.862530 CTCGGAGATCAAACACACGTGT 60.863 50.000 17.22 17.22 40.63 4.49
174 175 7.008992 GGAGATCAAACACACGTGTATACTTAC 59.991 40.741 22.90 11.11 44.13 2.34
187 188 6.637254 CGTGTATACTTACATTGGCTCTGTAG 59.363 42.308 4.17 0.00 40.35 2.74
188 189 7.490000 GTGTATACTTACATTGGCTCTGTAGT 58.510 38.462 4.17 0.00 40.35 2.73
189 190 8.627403 GTGTATACTTACATTGGCTCTGTAGTA 58.373 37.037 4.17 0.00 40.35 1.82
190 191 8.627403 TGTATACTTACATTGGCTCTGTAGTAC 58.373 37.037 4.17 0.00 33.37 2.73
191 192 7.899648 ATACTTACATTGGCTCTGTAGTACT 57.100 36.000 0.00 0.00 31.17 2.73
192 193 8.991783 ATACTTACATTGGCTCTGTAGTACTA 57.008 34.615 0.00 0.00 31.17 1.82
196 197 6.945938 ACATTGGCTCTGTAGTACTACTAG 57.054 41.667 28.56 24.84 37.00 2.57
203 204 6.705825 GGCTCTGTAGTACTACTAGGTAGTTC 59.294 46.154 28.56 14.70 45.68 3.01
222 223 5.611374 AGTTCATTCCCAGTATTACATCCG 58.389 41.667 0.00 0.00 0.00 4.18
234 235 0.108186 TACATCCGCTGGAGCACAAG 60.108 55.000 0.00 0.00 42.21 3.16
300 303 3.632145 TCTTGTTGAACTGGCTTTCCTTC 59.368 43.478 0.00 0.00 0.00 3.46
335 338 2.215907 TGGTCAAAATGTTTGCGTGG 57.784 45.000 0.00 0.00 0.00 4.94
353 356 3.081061 GTGGGTCAATATGAGTTGTGCA 58.919 45.455 0.00 0.00 0.00 4.57
358 375 3.127548 GTCAATATGAGTTGTGCACAGGG 59.872 47.826 20.59 3.42 0.00 4.45
375 392 3.838317 ACAGGGTAGCTGAGTGTGAATTA 59.162 43.478 0.00 0.00 0.00 1.40
377 394 4.813161 CAGGGTAGCTGAGTGTGAATTATG 59.187 45.833 0.00 0.00 0.00 1.90
392 413 6.830838 TGTGAATTATGTATGGTTACATGGCA 59.169 34.615 8.51 0.00 46.22 4.92
469 520 7.321745 TGATATACTAGCTCATACACCATCG 57.678 40.000 0.00 0.00 0.00 3.84
487 538 4.215613 CCATCGATCGATAGGTACTTGTCA 59.784 45.833 28.94 0.00 41.75 3.58
493 544 5.500645 TCGATAGGTACTTGTCATGACAG 57.499 43.478 26.48 21.69 42.94 3.51
503 557 8.299570 GGTACTTGTCATGACAGAAAAATTGAT 58.700 33.333 26.48 8.16 42.94 2.57
582 636 2.434359 GGCGGTCCGGTGAAGAAG 60.434 66.667 14.38 0.00 0.00 2.85
583 637 2.654877 GCGGTCCGGTGAAGAAGA 59.345 61.111 14.38 0.00 0.00 2.87
584 638 1.005394 GCGGTCCGGTGAAGAAGAA 60.005 57.895 14.38 0.00 0.00 2.52
585 639 1.014564 GCGGTCCGGTGAAGAAGAAG 61.015 60.000 14.38 0.00 0.00 2.85
586 640 0.601558 CGGTCCGGTGAAGAAGAAGA 59.398 55.000 2.34 0.00 0.00 2.87
587 641 1.402984 CGGTCCGGTGAAGAAGAAGAG 60.403 57.143 2.34 0.00 0.00 2.85
607 661 5.074115 AGAGGAAGAAGAAGAAGAAGACGA 58.926 41.667 0.00 0.00 0.00 4.20
608 662 5.048294 AGAGGAAGAAGAAGAAGAAGACGAC 60.048 44.000 0.00 0.00 0.00 4.34
609 663 3.915569 GGAAGAAGAAGAAGAAGACGACG 59.084 47.826 0.00 0.00 0.00 5.12
610 664 4.320348 GGAAGAAGAAGAAGAAGACGACGA 60.320 45.833 0.00 0.00 0.00 4.20
622 676 0.899232 GACGACGACGACTTTCGATG 59.101 55.000 15.32 0.00 43.74 3.84
624 678 0.899232 CGACGACGACTTTCGATGTC 59.101 55.000 0.00 8.37 43.74 3.06
642 696 7.039270 TCGATGTCGAAATAAAAGAGATGGAA 58.961 34.615 2.12 0.00 46.30 3.53
643 697 7.222805 TCGATGTCGAAATAAAAGAGATGGAAG 59.777 37.037 2.12 0.00 46.30 3.46
653 707 6.890979 AAAAGAGATGGAAGGAAAAGACAG 57.109 37.500 0.00 0.00 0.00 3.51
654 708 5.832539 AAGAGATGGAAGGAAAAGACAGA 57.167 39.130 0.00 0.00 0.00 3.41
662 716 3.726557 AGGAAAAGACAGATGGCATGA 57.273 42.857 3.81 0.00 0.00 3.07
685 739 1.304282 CACTGGTGGATGAAGGGGG 59.696 63.158 0.00 0.00 0.00 5.40
730 789 3.614092 CCTGGCCATGGTGATGATATAC 58.386 50.000 14.67 0.00 0.00 1.47
732 791 2.903135 TGGCCATGGTGATGATATACGA 59.097 45.455 14.67 0.00 0.00 3.43
733 792 3.055891 TGGCCATGGTGATGATATACGAG 60.056 47.826 14.67 0.00 0.00 4.18
734 793 3.055819 GGCCATGGTGATGATATACGAGT 60.056 47.826 14.67 0.00 0.00 4.18
735 794 4.159693 GGCCATGGTGATGATATACGAGTA 59.840 45.833 14.67 0.00 0.00 2.59
736 795 5.337250 GGCCATGGTGATGATATACGAGTAA 60.337 44.000 14.67 0.00 0.00 2.24
737 796 5.807520 GCCATGGTGATGATATACGAGTAAG 59.192 44.000 14.67 0.00 0.00 2.34
792 855 1.176619 CCAAACCGAACCCCACTTCC 61.177 60.000 0.00 0.00 0.00 3.46
802 865 4.340617 GAACCCCACTTCCATTTGTGATA 58.659 43.478 0.00 0.00 36.38 2.15
806 869 3.947834 CCCACTTCCATTTGTGATAGACC 59.052 47.826 0.00 0.00 36.38 3.85
807 870 4.324563 CCCACTTCCATTTGTGATAGACCT 60.325 45.833 0.00 0.00 36.38 3.85
809 872 5.491070 CACTTCCATTTGTGATAGACCTCA 58.509 41.667 0.00 0.00 36.38 3.86
810 873 5.583854 CACTTCCATTTGTGATAGACCTCAG 59.416 44.000 0.00 0.00 36.38 3.35
812 875 2.868583 CCATTTGTGATAGACCTCAGCG 59.131 50.000 0.00 0.00 0.00 5.18
815 878 0.684479 TGTGATAGACCTCAGCGGCT 60.684 55.000 0.00 0.00 35.61 5.52
816 879 1.319541 GTGATAGACCTCAGCGGCTA 58.680 55.000 0.26 0.00 35.61 3.93
817 880 1.001158 GTGATAGACCTCAGCGGCTAC 60.001 57.143 0.26 0.00 35.61 3.58
818 881 1.133761 TGATAGACCTCAGCGGCTACT 60.134 52.381 0.26 0.42 35.61 2.57
844 960 3.879892 TCTTCTCTCATCATCATCGTCGT 59.120 43.478 0.00 0.00 0.00 4.34
845 961 3.887339 TCTCTCATCATCATCGTCGTC 57.113 47.619 0.00 0.00 0.00 4.20
846 962 2.221981 TCTCTCATCATCATCGTCGTCG 59.778 50.000 0.00 0.00 38.55 5.12
847 963 1.940613 TCTCATCATCATCGTCGTCGT 59.059 47.619 1.33 0.00 38.33 4.34
849 965 1.037998 CATCATCATCGTCGTCGTCG 58.962 55.000 5.50 5.50 38.33 5.12
850 966 0.656259 ATCATCATCGTCGTCGTCGT 59.344 50.000 11.41 0.00 38.33 4.34
851 967 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.000 11.41 0.00 38.33 4.20
852 968 1.012562 ATCATCGTCGTCGTCGTCG 60.013 57.895 14.18 14.18 46.06 5.12
853 969 1.690283 ATCATCGTCGTCGTCGTCGT 61.690 55.000 18.44 6.36 45.27 4.34
855 971 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
857 973 4.783841 GTCGTCGTCGTCGTCGGG 62.784 72.222 18.80 5.05 45.17 5.14
860 976 3.490759 GTCGTCGTCGTCGGGCTA 61.491 66.667 11.74 0.00 38.33 3.93
861 977 3.190849 TCGTCGTCGTCGGGCTAG 61.191 66.667 11.74 0.00 38.33 3.42
864 980 3.200593 TCGTCGTCGGGCTAGCTC 61.201 66.667 15.72 10.26 37.69 4.09
865 981 3.506096 CGTCGTCGGGCTAGCTCA 61.506 66.667 16.47 0.00 0.00 4.26
866 982 2.835705 CGTCGTCGGGCTAGCTCAT 61.836 63.158 16.47 0.00 0.00 2.90
868 984 0.595310 GTCGTCGGGCTAGCTCATTC 60.595 60.000 16.47 3.00 0.00 2.67
869 985 1.300233 CGTCGGGCTAGCTCATTCC 60.300 63.158 16.47 6.13 0.00 3.01
871 987 0.466124 GTCGGGCTAGCTCATTCCTT 59.534 55.000 16.47 0.00 0.00 3.36
872 988 0.753262 TCGGGCTAGCTCATTCCTTC 59.247 55.000 16.47 0.00 0.00 3.46
873 989 0.250081 CGGGCTAGCTCATTCCTTCC 60.250 60.000 16.47 3.01 0.00 3.46
874 990 1.135960 GGGCTAGCTCATTCCTTCCT 58.864 55.000 15.72 0.00 0.00 3.36
876 992 2.486370 GGGCTAGCTCATTCCTTCCTTC 60.486 54.545 15.72 0.00 0.00 3.46
877 993 2.478831 GCTAGCTCATTCCTTCCTTCG 58.521 52.381 7.70 0.00 0.00 3.79
878 994 2.804933 GCTAGCTCATTCCTTCCTTCGG 60.805 54.545 7.70 0.00 0.00 4.30
880 996 1.630878 AGCTCATTCCTTCCTTCGGTT 59.369 47.619 0.00 0.00 0.00 4.44
881 997 2.010497 GCTCATTCCTTCCTTCGGTTC 58.990 52.381 0.00 0.00 0.00 3.62
883 999 1.066430 TCATTCCTTCCTTCGGTTCCG 60.066 52.381 4.74 4.74 0.00 4.30
884 1000 0.392595 ATTCCTTCCTTCGGTTCCGC 60.393 55.000 6.35 0.00 0.00 5.54
886 1002 1.448013 CCTTCCTTCGGTTCCGCTC 60.448 63.158 6.35 0.00 0.00 5.03
887 1003 1.448013 CTTCCTTCGGTTCCGCTCC 60.448 63.158 6.35 0.00 0.00 4.70
888 1004 2.854187 CTTCCTTCGGTTCCGCTCCC 62.854 65.000 6.35 0.00 0.00 4.30
889 1005 4.814294 CCTTCGGTTCCGCTCCCG 62.814 72.222 6.35 0.00 45.55 5.14
909 1025 1.532078 TCCTATCCATGGCGCGGTA 60.532 57.895 8.83 0.00 0.00 4.02
910 1026 1.374252 CCTATCCATGGCGCGGTAC 60.374 63.158 8.83 0.00 0.00 3.34
911 1027 1.666011 CTATCCATGGCGCGGTACT 59.334 57.895 8.83 0.00 0.00 2.73
913 1029 2.137425 TATCCATGGCGCGGTACTCG 62.137 60.000 8.83 0.00 40.71 4.18
922 1083 2.181021 CGGTACTCGCTCCCACAC 59.819 66.667 0.00 0.00 0.00 3.82
923 1084 2.341101 CGGTACTCGCTCCCACACT 61.341 63.158 0.00 0.00 0.00 3.55
933 1094 1.924731 CTCCCACACTACTGACCTCA 58.075 55.000 0.00 0.00 0.00 3.86
934 1095 1.546476 CTCCCACACTACTGACCTCAC 59.454 57.143 0.00 0.00 0.00 3.51
936 1097 1.633774 CCACACTACTGACCTCACCT 58.366 55.000 0.00 0.00 0.00 4.00
938 1099 1.273606 CACACTACTGACCTCACCTGG 59.726 57.143 0.00 0.00 0.00 4.45
939 1100 1.147191 ACACTACTGACCTCACCTGGA 59.853 52.381 0.00 0.00 0.00 3.86
944 1105 1.152631 TGACCTCACCTGGACGACA 60.153 57.895 0.00 0.00 0.00 4.35
946 1107 0.319641 GACCTCACCTGGACGACAAC 60.320 60.000 0.00 0.00 0.00 3.32
947 1108 1.004918 CCTCACCTGGACGACAACC 60.005 63.158 0.00 0.00 0.00 3.77
948 1109 1.745890 CTCACCTGGACGACAACCA 59.254 57.895 0.00 0.00 35.96 3.67
949 1110 0.600255 CTCACCTGGACGACAACCAC 60.600 60.000 0.00 0.00 33.57 4.16
950 1111 1.597027 CACCTGGACGACAACCACC 60.597 63.158 0.00 0.00 33.57 4.61
951 1112 2.357034 CCTGGACGACAACCACCG 60.357 66.667 0.00 0.00 33.57 4.94
952 1113 3.041940 CTGGACGACAACCACCGC 61.042 66.667 0.00 0.00 33.57 5.68
953 1114 4.612412 TGGACGACAACCACCGCC 62.612 66.667 0.00 0.00 32.03 6.13
954 1115 4.612412 GGACGACAACCACCGCCA 62.612 66.667 0.00 0.00 0.00 5.69
955 1116 2.358247 GACGACAACCACCGCCAT 60.358 61.111 0.00 0.00 0.00 4.40
956 1117 1.964373 GACGACAACCACCGCCATT 60.964 57.895 0.00 0.00 0.00 3.16
957 1118 1.512156 GACGACAACCACCGCCATTT 61.512 55.000 0.00 0.00 0.00 2.32
958 1119 1.209127 CGACAACCACCGCCATTTC 59.791 57.895 0.00 0.00 0.00 2.17
959 1120 1.584495 GACAACCACCGCCATTTCC 59.416 57.895 0.00 0.00 0.00 3.13
960 1121 0.893727 GACAACCACCGCCATTTCCT 60.894 55.000 0.00 0.00 0.00 3.36
961 1122 0.893727 ACAACCACCGCCATTTCCTC 60.894 55.000 0.00 0.00 0.00 3.71
962 1123 1.674322 AACCACCGCCATTTCCTCG 60.674 57.895 0.00 0.00 0.00 4.63
963 1124 2.119484 AACCACCGCCATTTCCTCGA 62.119 55.000 0.00 0.00 0.00 4.04
964 1125 1.153168 CCACCGCCATTTCCTCGAT 60.153 57.895 0.00 0.00 0.00 3.59
965 1126 1.160329 CCACCGCCATTTCCTCGATC 61.160 60.000 0.00 0.00 0.00 3.69
966 1127 1.227263 ACCGCCATTTCCTCGATCG 60.227 57.895 9.36 9.36 0.00 3.69
967 1128 2.598632 CCGCCATTTCCTCGATCGC 61.599 63.158 11.09 0.00 0.00 4.58
968 1129 2.598632 CGCCATTTCCTCGATCGCC 61.599 63.158 11.09 0.00 0.00 5.54
969 1130 2.598632 GCCATTTCCTCGATCGCCG 61.599 63.158 11.09 3.63 40.25 6.46
970 1131 2.598632 CCATTTCCTCGATCGCCGC 61.599 63.158 11.09 0.00 38.37 6.53
971 1132 2.280186 ATTTCCTCGATCGCCGCC 60.280 61.111 11.09 0.00 38.37 6.13
972 1133 4.865761 TTTCCTCGATCGCCGCCG 62.866 66.667 11.09 0.00 38.37 6.46
981 1142 4.207281 TCGCCGCCGATCCTTCTG 62.207 66.667 0.00 0.00 38.82 3.02
982 1143 4.207281 CGCCGCCGATCCTTCTGA 62.207 66.667 0.00 0.00 36.29 3.27
983 1144 2.186903 GCCGCCGATCCTTCTGAA 59.813 61.111 0.00 0.00 0.00 3.02
984 1145 1.227674 GCCGCCGATCCTTCTGAAT 60.228 57.895 0.00 0.00 0.00 2.57
985 1146 1.224722 GCCGCCGATCCTTCTGAATC 61.225 60.000 0.00 0.00 0.00 2.52
986 1147 0.941463 CCGCCGATCCTTCTGAATCG 60.941 60.000 5.21 5.21 36.41 3.34
987 1148 0.249073 CGCCGATCCTTCTGAATCGT 60.249 55.000 10.03 0.00 35.03 3.73
988 1149 1.001706 CGCCGATCCTTCTGAATCGTA 60.002 52.381 10.03 0.00 35.03 3.43
1591 1761 2.989253 TCTTCGGAGCAGGCGACA 60.989 61.111 0.00 0.00 0.00 4.35
1696 1872 2.663188 GCTTCGGCGGCATAGGAG 60.663 66.667 10.53 0.00 0.00 3.69
1697 1873 3.129300 CTTCGGCGGCATAGGAGA 58.871 61.111 10.53 0.00 0.00 3.71
1698 1874 1.300233 CTTCGGCGGCATAGGAGAC 60.300 63.158 10.53 0.00 0.00 3.36
1699 1875 3.133767 TTCGGCGGCATAGGAGACG 62.134 63.158 10.53 0.00 37.82 4.18
1703 1879 2.028190 CGGCATAGGAGACGCTGG 59.972 66.667 0.00 0.00 0.00 4.85
1704 1880 2.280457 GGCATAGGAGACGCTGGC 60.280 66.667 0.00 0.00 35.68 4.85
1705 1881 2.659897 GCATAGGAGACGCTGGCG 60.660 66.667 13.56 13.56 46.03 5.69
1706 1882 2.659897 CATAGGAGACGCTGGCGC 60.660 66.667 15.04 0.00 44.19 6.53
1707 1883 3.917760 ATAGGAGACGCTGGCGCC 61.918 66.667 22.73 22.73 44.19 6.53
1734 1910 0.748367 ATGCTGGTGCTGCTGATGAG 60.748 55.000 0.00 0.00 40.48 2.90
1741 1917 2.093764 GGTGCTGCTGATGAGTCTAACT 60.094 50.000 0.00 0.00 0.00 2.24
1842 2024 3.250323 CTCATCGCGCTGGACACG 61.250 66.667 10.42 0.00 0.00 4.49
1909 2097 2.382519 CCGACGACGACATTATCTTCC 58.617 52.381 9.28 0.00 42.66 3.46
1911 2099 3.249320 CCGACGACGACATTATCTTCCTA 59.751 47.826 9.28 0.00 42.66 2.94
1922 2110 1.989706 ATCTTCCTAGGAGACGAGCC 58.010 55.000 12.26 0.00 0.00 4.70
1924 2112 2.065906 CTTCCTAGGAGACGAGCCGC 62.066 65.000 12.26 0.00 0.00 6.53
1925 2113 3.597728 CCTAGGAGACGAGCCGCC 61.598 72.222 1.05 0.00 0.00 6.13
1985 2185 2.606725 GCGTGTCCATTGAGATTGAGAG 59.393 50.000 0.00 0.00 0.00 3.20
2052 2252 1.671742 CAGCCTGGTACGTGGACTT 59.328 57.895 0.00 0.00 0.00 3.01
2325 2540 6.937436 AATGTGAAGAAAAGAAACTACGGT 57.063 33.333 0.00 0.00 0.00 4.83
2326 2541 8.981647 GTAATGTGAAGAAAAGAAACTACGGTA 58.018 33.333 0.00 0.00 0.00 4.02
2327 2542 8.441312 AATGTGAAGAAAAGAAACTACGGTAA 57.559 30.769 0.00 0.00 0.00 2.85
2328 2543 7.237920 TGTGAAGAAAAGAAACTACGGTAAC 57.762 36.000 0.00 0.00 0.00 2.50
2353 2568 3.253921 TGGGCGCTATCAATCAATCAATG 59.746 43.478 7.64 0.00 0.00 2.82
2390 2610 7.094506 TGAGTCAAAGATCAAATCAATCCAGTG 60.095 37.037 0.00 0.00 0.00 3.66
2391 2611 5.803967 GTCAAAGATCAAATCAATCCAGTGC 59.196 40.000 0.00 0.00 0.00 4.40
2392 2612 5.713389 TCAAAGATCAAATCAATCCAGTGCT 59.287 36.000 0.00 0.00 0.00 4.40
2393 2613 6.885918 TCAAAGATCAAATCAATCCAGTGCTA 59.114 34.615 0.00 0.00 0.00 3.49
2427 2647 4.084223 GGCAAGCAGATGACAAAAATGTTG 60.084 41.667 0.00 0.00 0.00 3.33
2428 2648 4.746115 GCAAGCAGATGACAAAAATGTTGA 59.254 37.500 0.00 0.00 0.00 3.18
2432 2652 5.048224 AGCAGATGACAAAAATGTTGAGAGG 60.048 40.000 0.00 0.00 0.00 3.69
2433 2653 5.048504 GCAGATGACAAAAATGTTGAGAGGA 60.049 40.000 0.00 0.00 0.00 3.71
2434 2654 6.376978 CAGATGACAAAAATGTTGAGAGGAC 58.623 40.000 0.00 0.00 0.00 3.85
2435 2655 4.811555 TGACAAAAATGTTGAGAGGACG 57.188 40.909 0.00 0.00 0.00 4.79
2437 2657 4.272504 TGACAAAAATGTTGAGAGGACGAC 59.727 41.667 0.00 0.00 0.00 4.34
2439 2659 3.380479 AAAATGTTGAGAGGACGACGA 57.620 42.857 0.00 0.00 0.00 4.20
2442 2674 1.601166 TGTTGAGAGGACGACGAGAA 58.399 50.000 0.00 0.00 0.00 2.87
2465 2697 7.784073 AGAAGAGAAGAAGATGGTGATCTCATA 59.216 37.037 0.00 0.00 38.03 2.15
2478 2716 5.048921 GGTGATCTCATATTGCACATCAAGG 60.049 44.000 0.00 0.00 38.22 3.61
2492 2730 3.949754 ACATCAAGGCATGTATTGACTGG 59.050 43.478 14.42 10.66 45.69 4.00
2493 2731 3.719268 TCAAGGCATGTATTGACTGGT 57.281 42.857 9.75 0.00 45.69 4.00
2497 2735 3.084039 AGGCATGTATTGACTGGTTGTG 58.916 45.455 0.00 0.00 44.27 3.33
2506 2744 6.647481 TGTATTGACTGGTTGTGTGTATGTAC 59.353 38.462 0.00 0.00 0.00 2.90
2507 2745 4.674281 TGACTGGTTGTGTGTATGTACA 57.326 40.909 0.00 0.00 0.00 2.90
2508 2746 5.024785 TGACTGGTTGTGTGTATGTACAA 57.975 39.130 0.00 0.00 38.04 2.41
2552 2795 2.283298 AGCTAGCACACATGTACATGC 58.717 47.619 31.19 21.09 42.39 4.06
2553 2796 1.004610 GCTAGCACACATGTACATGCG 60.005 52.381 31.19 25.48 42.98 4.73
2578 2821 7.865889 CGATGCATGGAATTACTAGTTACTACA 59.134 37.037 2.46 0.00 0.00 2.74
2579 2822 9.542462 GATGCATGGAATTACTAGTTACTACAA 57.458 33.333 2.46 0.00 0.00 2.41
2637 2915 6.859112 AATTTACTAGAGACAGAGGAGCAA 57.141 37.500 0.00 0.00 0.00 3.91
2638 2916 5.646577 TTTACTAGAGACAGAGGAGCAAC 57.353 43.478 0.00 0.00 0.00 4.17
2640 2918 3.501349 ACTAGAGACAGAGGAGCAACAA 58.499 45.455 0.00 0.00 0.00 2.83
2645 2923 0.689623 ACAGAGGAGCAACAAGAGGG 59.310 55.000 0.00 0.00 0.00 4.30
2650 2928 0.915364 GGAGCAACAAGAGGGAGGAT 59.085 55.000 0.00 0.00 0.00 3.24
2655 2933 2.356535 GCAACAAGAGGGAGGATGATGT 60.357 50.000 0.00 0.00 0.00 3.06
2656 2934 3.539604 CAACAAGAGGGAGGATGATGTC 58.460 50.000 0.00 0.00 0.00 3.06
2657 2935 2.837947 ACAAGAGGGAGGATGATGTCA 58.162 47.619 0.00 0.00 0.00 3.58
2658 2936 3.184628 ACAAGAGGGAGGATGATGTCAA 58.815 45.455 0.00 0.00 0.00 3.18
2659 2937 3.054802 ACAAGAGGGAGGATGATGTCAAC 60.055 47.826 0.00 0.00 0.00 3.18
2660 2938 1.759445 AGAGGGAGGATGATGTCAACG 59.241 52.381 0.00 0.00 0.00 4.10
2661 2939 0.179000 AGGGAGGATGATGTCAACGC 59.821 55.000 0.00 0.00 0.00 4.84
2663 2941 1.154205 GGAGGATGATGTCAACGCCG 61.154 60.000 0.00 0.00 0.00 6.46
2664 2942 1.766143 GAGGATGATGTCAACGCCGC 61.766 60.000 0.00 0.00 0.00 6.53
2665 2943 2.709475 GATGATGTCAACGCCGCC 59.291 61.111 0.00 0.00 0.00 6.13
2667 2945 3.657448 ATGATGTCAACGCCGCCGA 62.657 57.895 0.00 0.00 38.29 5.54
2668 2946 3.849953 GATGTCAACGCCGCCGAC 61.850 66.667 0.00 0.00 38.29 4.79
2682 2960 2.815211 CGACCGACCGTCTCCGTA 60.815 66.667 0.00 0.00 39.56 4.02
2694 2972 6.455360 ACCGTCTCCGTATGTAAAGAAATA 57.545 37.500 0.00 0.00 0.00 1.40
2696 2974 6.976925 ACCGTCTCCGTATGTAAAGAAATAAG 59.023 38.462 0.00 0.00 0.00 1.73
2698 2976 7.866393 CCGTCTCCGTATGTAAAGAAATAAGAT 59.134 37.037 0.00 0.00 0.00 2.40
2699 2977 8.691727 CGTCTCCGTATGTAAAGAAATAAGATG 58.308 37.037 0.00 0.00 0.00 2.90
2700 2978 8.979574 GTCTCCGTATGTAAAGAAATAAGATGG 58.020 37.037 0.00 0.00 0.00 3.51
2701 2979 8.701895 TCTCCGTATGTAAAGAAATAAGATGGT 58.298 33.333 0.00 0.00 0.00 3.55
2702 2980 9.326413 CTCCGTATGTAAAGAAATAAGATGGTT 57.674 33.333 0.00 0.00 0.00 3.67
2747 3025 3.571741 GAGTAAATCGGAGCGGAGG 57.428 57.895 0.00 0.00 0.00 4.30
2748 3026 0.032267 GAGTAAATCGGAGCGGAGGG 59.968 60.000 0.00 0.00 0.00 4.30
2749 3027 0.396695 AGTAAATCGGAGCGGAGGGA 60.397 55.000 0.00 0.00 0.00 4.20
2750 3028 0.032267 GTAAATCGGAGCGGAGGGAG 59.968 60.000 0.00 0.00 0.00 4.30
2751 3029 0.396695 TAAATCGGAGCGGAGGGAGT 60.397 55.000 0.00 0.00 0.00 3.85
2752 3030 0.396695 AAATCGGAGCGGAGGGAGTA 60.397 55.000 0.00 0.00 0.00 2.59
2753 3031 0.824182 AATCGGAGCGGAGGGAGTAG 60.824 60.000 0.00 0.00 0.00 2.57
2754 3032 2.700407 ATCGGAGCGGAGGGAGTAGG 62.700 65.000 0.00 0.00 0.00 3.18
2755 3033 2.279408 GGAGCGGAGGGAGTAGGT 59.721 66.667 0.00 0.00 0.00 3.08
2756 3034 1.535685 GGAGCGGAGGGAGTAGGTA 59.464 63.158 0.00 0.00 0.00 3.08
2757 3035 0.537828 GGAGCGGAGGGAGTAGGTAG 60.538 65.000 0.00 0.00 0.00 3.18
2758 3036 0.537828 GAGCGGAGGGAGTAGGTAGG 60.538 65.000 0.00 0.00 0.00 3.18
2759 3037 0.992431 AGCGGAGGGAGTAGGTAGGA 60.992 60.000 0.00 0.00 0.00 2.94
2760 3038 0.106318 GCGGAGGGAGTAGGTAGGAA 60.106 60.000 0.00 0.00 0.00 3.36
2761 3039 1.984066 CGGAGGGAGTAGGTAGGAAG 58.016 60.000 0.00 0.00 0.00 3.46
2762 3040 1.479021 CGGAGGGAGTAGGTAGGAAGG 60.479 61.905 0.00 0.00 0.00 3.46
2763 3041 1.133104 GGAGGGAGTAGGTAGGAAGGG 60.133 61.905 0.00 0.00 0.00 3.95
2764 3042 0.265254 AGGGAGTAGGTAGGAAGGGC 59.735 60.000 0.00 0.00 0.00 5.19
2765 3043 1.114119 GGGAGTAGGTAGGAAGGGCG 61.114 65.000 0.00 0.00 0.00 6.13
2766 3044 1.740905 GAGTAGGTAGGAAGGGCGC 59.259 63.158 0.00 0.00 0.00 6.53
2767 3045 0.756070 GAGTAGGTAGGAAGGGCGCT 60.756 60.000 7.64 0.00 0.00 5.92
2768 3046 0.554792 AGTAGGTAGGAAGGGCGCTA 59.445 55.000 7.64 0.00 0.00 4.26
2769 3047 1.063417 AGTAGGTAGGAAGGGCGCTAA 60.063 52.381 7.64 0.00 0.00 3.09
2770 3048 1.340568 GTAGGTAGGAAGGGCGCTAAG 59.659 57.143 7.64 0.00 0.00 2.18
2786 3064 5.380651 GCGCTAAGCTATCAATCAATCAAG 58.619 41.667 0.00 0.00 44.04 3.02
2787 3065 5.178252 GCGCTAAGCTATCAATCAATCAAGA 59.822 40.000 0.00 0.00 44.04 3.02
2788 3066 6.128336 GCGCTAAGCTATCAATCAATCAAGAT 60.128 38.462 0.00 0.00 44.04 2.40
2789 3067 7.572724 GCGCTAAGCTATCAATCAATCAAGATT 60.573 37.037 0.00 0.00 44.04 2.40
2790 3068 7.956403 CGCTAAGCTATCAATCAATCAAGATTC 59.044 37.037 0.00 0.00 36.13 2.52
2791 3069 8.781196 GCTAAGCTATCAATCAATCAAGATTCA 58.219 33.333 0.00 0.00 36.13 2.57
2818 3096 9.726438 AAAAAGAAAAGATTAGCTAGCTAGTGA 57.274 29.630 23.02 10.58 0.00 3.41
2819 3097 9.898152 AAAAGAAAAGATTAGCTAGCTAGTGAT 57.102 29.630 23.02 14.85 0.00 3.06
2820 3098 8.885494 AAGAAAAGATTAGCTAGCTAGTGATG 57.115 34.615 23.02 0.00 0.00 3.07
2821 3099 7.441017 AGAAAAGATTAGCTAGCTAGTGATGG 58.559 38.462 23.02 0.00 0.00 3.51
2822 3100 4.799564 AGATTAGCTAGCTAGTGATGGC 57.200 45.455 23.02 9.23 36.30 4.40
2823 3101 4.155709 AGATTAGCTAGCTAGTGATGGCA 58.844 43.478 23.02 7.67 38.56 4.92
2824 3102 4.590647 AGATTAGCTAGCTAGTGATGGCAA 59.409 41.667 23.02 8.72 38.56 4.52
2825 3103 4.963318 TTAGCTAGCTAGTGATGGCAAT 57.037 40.909 23.03 0.00 38.56 3.56
2826 3104 3.853355 AGCTAGCTAGTGATGGCAATT 57.147 42.857 17.69 0.00 38.56 2.32
2827 3105 3.737850 AGCTAGCTAGTGATGGCAATTC 58.262 45.455 17.69 0.88 38.56 2.17
2828 3106 3.135348 AGCTAGCTAGTGATGGCAATTCA 59.865 43.478 17.69 0.00 38.56 2.57
2829 3107 3.497640 GCTAGCTAGTGATGGCAATTCAG 59.502 47.826 21.62 0.00 36.09 3.02
2830 3108 2.295885 AGCTAGTGATGGCAATTCAGC 58.704 47.619 0.00 0.00 0.00 4.26
2831 3109 2.019249 GCTAGTGATGGCAATTCAGCA 58.981 47.619 0.00 0.00 35.83 4.41
2832 3110 2.621998 GCTAGTGATGGCAATTCAGCAT 59.378 45.455 0.00 0.00 35.44 3.79
2833 3111 3.550233 GCTAGTGATGGCAATTCAGCATG 60.550 47.826 0.00 0.00 35.44 4.06
2834 3112 1.136305 AGTGATGGCAATTCAGCATGC 59.864 47.619 10.51 10.51 41.82 4.06
2835 3113 1.134936 GTGATGGCAATTCAGCATGCA 60.135 47.619 21.98 0.00 44.32 3.96
2836 3114 1.760029 TGATGGCAATTCAGCATGCAT 59.240 42.857 21.98 1.08 44.32 3.96
2837 3115 2.135139 GATGGCAATTCAGCATGCATG 58.865 47.619 22.70 22.70 44.32 4.06
2850 3128 3.715618 CATGCATGCATGTTCAAACAC 57.284 42.857 40.30 8.94 46.20 3.32
2851 3129 2.884894 TGCATGCATGTTCAAACACA 57.115 40.000 26.79 11.44 42.51 3.72
2852 3130 2.745102 TGCATGCATGTTCAAACACAG 58.255 42.857 26.79 0.00 42.51 3.66
2853 3131 1.458064 GCATGCATGTTCAAACACAGC 59.542 47.619 26.79 12.62 42.51 4.40
2856 3134 3.015934 TGCATGTTCAAACACAGCATC 57.984 42.857 16.34 0.00 43.69 3.91
2857 3135 2.361438 TGCATGTTCAAACACAGCATCA 59.639 40.909 16.34 0.79 43.69 3.07
2858 3136 3.006003 TGCATGTTCAAACACAGCATCAT 59.994 39.130 16.34 0.00 43.69 2.45
2859 3137 3.611113 GCATGTTCAAACACAGCATCATC 59.389 43.478 13.95 0.00 42.51 2.92
2860 3138 4.617530 GCATGTTCAAACACAGCATCATCT 60.618 41.667 13.95 0.00 42.51 2.90
2861 3139 5.466819 CATGTTCAAACACAGCATCATCTT 58.533 37.500 0.00 0.00 42.51 2.40
2862 3140 5.112220 TGTTCAAACACAGCATCATCTTC 57.888 39.130 0.00 0.00 33.17 2.87
2863 3141 4.823442 TGTTCAAACACAGCATCATCTTCT 59.177 37.500 0.00 0.00 33.17 2.85
2864 3142 5.300034 TGTTCAAACACAGCATCATCTTCTT 59.700 36.000 0.00 0.00 33.17 2.52
2865 3143 5.618056 TCAAACACAGCATCATCTTCTTC 57.382 39.130 0.00 0.00 0.00 2.87
2876 3154 6.203145 AGCATCATCTTCTTCAAGATTGATCG 59.797 38.462 5.46 4.24 45.68 3.69
2878 3156 4.813161 TCATCTTCTTCAAGATTGATCGCC 59.187 41.667 0.00 0.00 45.68 5.54
2891 3169 1.361668 GATCGCCGTGCACATCAAGT 61.362 55.000 18.64 0.00 0.00 3.16
2892 3170 0.955428 ATCGCCGTGCACATCAAGTT 60.955 50.000 18.64 0.00 0.00 2.66
2893 3171 1.154413 CGCCGTGCACATCAAGTTC 60.154 57.895 18.64 0.00 0.00 3.01
2894 3172 1.840630 CGCCGTGCACATCAAGTTCA 61.841 55.000 18.64 0.00 0.00 3.18
2895 3173 0.310543 GCCGTGCACATCAAGTTCAA 59.689 50.000 18.64 0.00 0.00 2.69
2896 3174 1.664016 GCCGTGCACATCAAGTTCAAG 60.664 52.381 18.64 0.00 0.00 3.02
2897 3175 1.603802 CCGTGCACATCAAGTTCAAGT 59.396 47.619 18.64 0.00 0.00 3.16
2917 3195 4.327680 AGTGTAGCATCCAAAAGTCTTCC 58.672 43.478 0.00 0.00 0.00 3.46
2938 3216 2.284151 GGTTGGGTTGGGTTGGGT 59.716 61.111 0.00 0.00 0.00 4.51
2939 3217 1.383386 GGTTGGGTTGGGTTGGGTT 60.383 57.895 0.00 0.00 0.00 4.11
2940 3218 1.691195 GGTTGGGTTGGGTTGGGTTG 61.691 60.000 0.00 0.00 0.00 3.77
2941 3219 1.383248 TTGGGTTGGGTTGGGTTGG 60.383 57.895 0.00 0.00 0.00 3.77
2942 3220 2.525629 GGGTTGGGTTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
2959 3237 4.502431 GGTTGGGTTGGTTGTAAAATCCTG 60.502 45.833 0.00 0.00 0.00 3.86
2970 3248 4.662278 TGTAAAATCCTGTTTCTCCTGGG 58.338 43.478 0.00 0.00 0.00 4.45
2971 3249 2.222227 AAATCCTGTTTCTCCTGGGC 57.778 50.000 0.00 0.00 0.00 5.36
2972 3250 1.376649 AATCCTGTTTCTCCTGGGCT 58.623 50.000 0.00 0.00 0.00 5.19
2973 3251 0.622665 ATCCTGTTTCTCCTGGGCTG 59.377 55.000 0.00 0.00 0.00 4.85
2974 3252 1.001641 CCTGTTTCTCCTGGGCTGG 60.002 63.158 0.00 0.00 0.00 4.85
2982 3260 2.441532 CCTGGGCTGGCCAATGAG 60.442 66.667 24.04 12.00 37.98 2.90
2992 3270 1.988107 TGGCCAATGAGAAGTCTTCCT 59.012 47.619 0.61 0.00 0.00 3.36
2996 3279 5.010282 GGCCAATGAGAAGTCTTCCTTTTA 58.990 41.667 9.04 0.00 32.03 1.52
2997 3280 5.124617 GGCCAATGAGAAGTCTTCCTTTTAG 59.875 44.000 9.04 0.00 32.03 1.85
3001 3284 2.673862 GAGAAGTCTTCCTTTTAGCCGC 59.326 50.000 9.04 0.00 32.03 6.53
3009 3292 4.039852 TCTTCCTTTTAGCCGCCAAAAATT 59.960 37.500 0.00 0.00 0.00 1.82
3012 3295 5.855045 TCCTTTTAGCCGCCAAAAATTAAA 58.145 33.333 0.00 0.00 0.00 1.52
3013 3296 5.929415 TCCTTTTAGCCGCCAAAAATTAAAG 59.071 36.000 0.00 0.00 0.00 1.85
3022 3305 6.620518 GCCGCCAAAAATTAAAGAATTTGAGG 60.621 38.462 0.00 8.60 43.10 3.86
3040 3323 3.630312 TGAGGTGAACATGCATGATGATG 59.370 43.478 32.75 7.51 35.80 3.07
3108 3395 3.508793 ACAGCAAAAATCATGTGAGGAGG 59.491 43.478 0.00 0.00 0.00 4.30
3116 3403 2.995283 TCATGTGAGGAGGCAATTGAG 58.005 47.619 10.34 0.00 0.00 3.02
3121 3408 3.822735 TGTGAGGAGGCAATTGAGAAAAG 59.177 43.478 10.34 0.00 0.00 2.27
3165 3452 1.329906 CTAACTGCTGCTGCTACATGC 59.670 52.381 17.00 0.00 40.48 4.06
3181 3468 7.420184 GCTACATGCATGTTACATACATACA 57.580 36.000 35.45 13.35 45.71 2.29
3248 3549 1.079266 CTCTCACCACTGAGCCTGC 60.079 63.158 0.00 0.00 43.45 4.85
3262 3563 1.693062 AGCCTGCCATGACTATGAGAG 59.307 52.381 0.00 0.00 36.36 3.20
3263 3564 1.690893 GCCTGCCATGACTATGAGAGA 59.309 52.381 0.00 0.00 36.36 3.10
3264 3565 2.103771 GCCTGCCATGACTATGAGAGAA 59.896 50.000 0.00 0.00 36.36 2.87
3302 3603 1.446907 CCAACATGTGAGTCTGGCTC 58.553 55.000 0.00 1.45 44.36 4.70
3303 3604 1.002888 CCAACATGTGAGTCTGGCTCT 59.997 52.381 11.02 0.00 44.41 4.09
3305 3606 0.612229 ACATGTGAGTCTGGCTCTGG 59.388 55.000 11.02 0.25 44.41 3.86
3306 3607 0.743701 CATGTGAGTCTGGCTCTGGC 60.744 60.000 11.02 1.91 44.41 4.85
3308 3609 1.079266 GTGAGTCTGGCTCTGGCTG 60.079 63.158 11.02 0.00 44.41 4.85
3311 3612 0.969917 GAGTCTGGCTCTGGCTGAGA 60.970 60.000 23.60 4.28 45.39 3.27
3314 3615 1.065564 GTCTGGCTCTGGCTGAGAATT 60.066 52.381 23.60 0.00 45.39 2.17
3315 3616 2.169352 GTCTGGCTCTGGCTGAGAATTA 59.831 50.000 23.60 4.53 45.39 1.40
3316 3617 2.169352 TCTGGCTCTGGCTGAGAATTAC 59.831 50.000 23.60 6.51 45.39 1.89
3317 3618 1.908619 TGGCTCTGGCTGAGAATTACA 59.091 47.619 23.60 11.06 45.39 2.41
3318 3619 2.305635 TGGCTCTGGCTGAGAATTACAA 59.694 45.455 23.60 0.00 45.39 2.41
3319 3620 2.680339 GGCTCTGGCTGAGAATTACAAC 59.320 50.000 23.60 4.51 45.39 3.32
3320 3621 3.604582 GCTCTGGCTGAGAATTACAACT 58.395 45.455 23.60 0.00 45.39 3.16
3321 3622 4.383118 GGCTCTGGCTGAGAATTACAACTA 60.383 45.833 23.60 0.00 45.39 2.24
3322 3623 4.808364 GCTCTGGCTGAGAATTACAACTAG 59.192 45.833 23.60 0.00 45.39 2.57
3323 3624 5.625656 GCTCTGGCTGAGAATTACAACTAGT 60.626 44.000 23.60 0.00 45.39 2.57
3324 3625 6.405953 GCTCTGGCTGAGAATTACAACTAGTA 60.406 42.308 23.60 0.00 45.39 1.82
3351 3658 1.142870 TGTGGTTGGCTGCTAGAGTTT 59.857 47.619 0.00 0.00 0.00 2.66
3352 3659 2.370519 TGTGGTTGGCTGCTAGAGTTTA 59.629 45.455 0.00 0.00 0.00 2.01
3353 3660 3.003480 GTGGTTGGCTGCTAGAGTTTAG 58.997 50.000 0.00 0.00 0.00 1.85
3354 3661 2.637872 TGGTTGGCTGCTAGAGTTTAGT 59.362 45.455 0.00 0.00 0.00 2.24
3358 3668 4.124851 TGGCTGCTAGAGTTTAGTTAGC 57.875 45.455 0.00 9.25 40.09 3.09
3382 3692 7.268186 CATGTATGTATGCACAAACAAACAG 57.732 36.000 0.00 0.00 38.42 3.16
3383 3693 5.218885 TGTATGTATGCACAAACAAACAGC 58.781 37.500 0.00 0.00 38.42 4.40
3384 3694 3.790152 TGTATGCACAAACAAACAGCA 57.210 38.095 0.00 0.00 39.79 4.41
3385 3695 4.115401 TGTATGCACAAACAAACAGCAA 57.885 36.364 0.00 0.00 38.85 3.91
3386 3696 4.111198 TGTATGCACAAACAAACAGCAAG 58.889 39.130 0.00 0.00 38.85 4.01
3387 3697 3.523606 ATGCACAAACAAACAGCAAGA 57.476 38.095 0.00 0.00 38.85 3.02
3388 3698 3.523606 TGCACAAACAAACAGCAAGAT 57.476 38.095 0.00 0.00 31.42 2.40
3389 3699 3.859443 TGCACAAACAAACAGCAAGATT 58.141 36.364 0.00 0.00 31.42 2.40
3408 3718 9.220767 GCAAGATTAGATTACAAATAGGTAGGG 57.779 37.037 0.00 0.00 0.00 3.53
3411 3721 9.448587 AGATTAGATTACAAATAGGTAGGGTGT 57.551 33.333 0.00 0.00 0.00 4.16
3412 3722 9.490379 GATTAGATTACAAATAGGTAGGGTGTG 57.510 37.037 0.00 0.00 0.00 3.82
3414 3724 6.650120 AGATTACAAATAGGTAGGGTGTGTG 58.350 40.000 0.00 0.00 0.00 3.82
3415 3725 3.067684 ACAAATAGGTAGGGTGTGTGC 57.932 47.619 0.00 0.00 0.00 4.57
3416 3726 2.642807 ACAAATAGGTAGGGTGTGTGCT 59.357 45.455 0.00 0.00 0.00 4.40
3417 3727 3.841845 ACAAATAGGTAGGGTGTGTGCTA 59.158 43.478 0.00 0.00 0.00 3.49
3432 3742 5.869888 GTGTGTGCTAGACTAGTTAATTGCT 59.130 40.000 11.15 0.00 0.00 3.91
3433 3743 6.369065 GTGTGTGCTAGACTAGTTAATTGCTT 59.631 38.462 11.15 0.00 0.00 3.91
3434 3744 6.368791 TGTGTGCTAGACTAGTTAATTGCTTG 59.631 38.462 11.15 0.00 0.00 4.01
3435 3745 6.590292 GTGTGCTAGACTAGTTAATTGCTTGA 59.410 38.462 11.15 0.00 0.00 3.02
3436 3746 7.278868 GTGTGCTAGACTAGTTAATTGCTTGAT 59.721 37.037 11.15 0.00 0.00 2.57
3437 3747 7.278646 TGTGCTAGACTAGTTAATTGCTTGATG 59.721 37.037 11.15 0.00 0.00 3.07
3439 3749 8.474831 TGCTAGACTAGTTAATTGCTTGATGTA 58.525 33.333 11.15 0.00 0.00 2.29
3440 3750 8.973378 GCTAGACTAGTTAATTGCTTGATGTAG 58.027 37.037 11.15 0.00 0.00 2.74
3458 3771 9.624697 TTGATGTAGTCAAATAATTCAACTTGC 57.375 29.630 0.00 0.00 43.64 4.01
3558 3884 5.251764 GCTGGAGCTGGACATGAATAATAT 58.748 41.667 0.00 0.00 38.21 1.28
3559 3885 5.123502 GCTGGAGCTGGACATGAATAATATG 59.876 44.000 0.00 0.00 38.21 1.78
3560 3886 5.005740 TGGAGCTGGACATGAATAATATGC 58.994 41.667 0.00 0.00 0.00 3.14
3561 3887 5.005740 GGAGCTGGACATGAATAATATGCA 58.994 41.667 0.00 0.00 0.00 3.96
3562 3888 5.106396 GGAGCTGGACATGAATAATATGCAC 60.106 44.000 0.00 0.00 0.00 4.57
3563 3889 4.763793 AGCTGGACATGAATAATATGCACC 59.236 41.667 0.00 0.00 0.00 5.01
3565 3891 5.335426 GCTGGACATGAATAATATGCACCTG 60.335 44.000 0.00 0.00 32.79 4.00
3566 3892 5.693961 TGGACATGAATAATATGCACCTGT 58.306 37.500 0.00 0.00 0.00 4.00
3567 3893 5.764686 TGGACATGAATAATATGCACCTGTC 59.235 40.000 0.00 6.47 0.00 3.51
3568 3894 5.764686 GGACATGAATAATATGCACCTGTCA 59.235 40.000 13.90 0.00 33.81 3.58
3569 3895 6.432162 GGACATGAATAATATGCACCTGTCAT 59.568 38.462 13.90 0.00 33.81 3.06
3570 3896 7.210718 ACATGAATAATATGCACCTGTCATG 57.789 36.000 18.19 18.19 44.19 3.07
3571 3897 6.208007 ACATGAATAATATGCACCTGTCATGG 59.792 38.462 21.34 10.52 43.36 3.66
3572 3898 5.939447 TGAATAATATGCACCTGTCATGGA 58.061 37.500 0.00 0.00 0.00 3.41
3573 3899 6.545567 TGAATAATATGCACCTGTCATGGAT 58.454 36.000 0.00 0.00 32.35 3.41
3574 3900 6.431852 TGAATAATATGCACCTGTCATGGATG 59.568 38.462 0.00 0.00 30.03 3.51
3580 3906 1.674441 CACCTGTCATGGATGATGCAC 59.326 52.381 0.00 0.00 39.30 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.224523 TGTGTTGTTGGGTTGGCAAAAA 60.225 40.909 0.00 0.00 0.00 1.94
6 7 1.347707 TGTGTTGTTGGGTTGGCAAAA 59.652 42.857 0.00 0.00 0.00 2.44
7 8 0.976641 TGTGTTGTTGGGTTGGCAAA 59.023 45.000 0.00 0.00 0.00 3.68
8 9 0.247736 GTGTGTTGTTGGGTTGGCAA 59.752 50.000 0.00 0.00 0.00 4.52
9 10 0.900182 TGTGTGTTGTTGGGTTGGCA 60.900 50.000 0.00 0.00 0.00 4.92
10 11 0.459411 GTGTGTGTTGTTGGGTTGGC 60.459 55.000 0.00 0.00 0.00 4.52
11 12 0.891373 TGTGTGTGTTGTTGGGTTGG 59.109 50.000 0.00 0.00 0.00 3.77
12 13 2.426738 AGATGTGTGTGTTGTTGGGTTG 59.573 45.455 0.00 0.00 0.00 3.77
13 14 2.733956 AGATGTGTGTGTTGTTGGGTT 58.266 42.857 0.00 0.00 0.00 4.11
14 15 2.435372 AGATGTGTGTGTTGTTGGGT 57.565 45.000 0.00 0.00 0.00 4.51
15 16 2.034558 GGAAGATGTGTGTGTTGTTGGG 59.965 50.000 0.00 0.00 0.00 4.12
16 17 2.034558 GGGAAGATGTGTGTGTTGTTGG 59.965 50.000 0.00 0.00 0.00 3.77
17 18 2.951642 AGGGAAGATGTGTGTGTTGTTG 59.048 45.455 0.00 0.00 0.00 3.33
18 19 3.297134 AGGGAAGATGTGTGTGTTGTT 57.703 42.857 0.00 0.00 0.00 2.83
19 20 3.391296 ACTAGGGAAGATGTGTGTGTTGT 59.609 43.478 0.00 0.00 0.00 3.32
20 21 4.008074 ACTAGGGAAGATGTGTGTGTTG 57.992 45.455 0.00 0.00 0.00 3.33
21 22 6.895756 TCTATACTAGGGAAGATGTGTGTGTT 59.104 38.462 0.00 0.00 0.00 3.32
22 23 6.432581 TCTATACTAGGGAAGATGTGTGTGT 58.567 40.000 0.00 0.00 0.00 3.72
23 24 6.961360 TCTATACTAGGGAAGATGTGTGTG 57.039 41.667 0.00 0.00 0.00 3.82
24 25 7.973048 TTTCTATACTAGGGAAGATGTGTGT 57.027 36.000 0.00 0.00 0.00 3.72
25 26 8.258007 TGTTTTCTATACTAGGGAAGATGTGTG 58.742 37.037 0.00 0.00 0.00 3.82
26 27 8.375493 TGTTTTCTATACTAGGGAAGATGTGT 57.625 34.615 0.00 0.00 0.00 3.72
27 28 9.667107 TTTGTTTTCTATACTAGGGAAGATGTG 57.333 33.333 0.00 0.00 0.00 3.21
87 88 9.605955 GCAATGCGTTTGTGTAATGAATATATA 57.394 29.630 0.00 0.00 37.65 0.86
88 89 8.134261 TGCAATGCGTTTGTGTAATGAATATAT 58.866 29.630 0.00 0.00 37.65 0.86
89 90 7.475840 TGCAATGCGTTTGTGTAATGAATATA 58.524 30.769 0.00 0.00 37.65 0.86
90 91 6.328714 TGCAATGCGTTTGTGTAATGAATAT 58.671 32.000 0.00 0.00 37.65 1.28
91 92 5.703876 TGCAATGCGTTTGTGTAATGAATA 58.296 33.333 0.00 0.00 37.65 1.75
92 93 4.554292 TGCAATGCGTTTGTGTAATGAAT 58.446 34.783 0.00 0.00 37.65 2.57
93 94 3.969899 TGCAATGCGTTTGTGTAATGAA 58.030 36.364 0.00 0.00 37.65 2.57
94 95 3.632855 TGCAATGCGTTTGTGTAATGA 57.367 38.095 0.00 0.00 37.65 2.57
95 96 4.234010 CATGCAATGCGTTTGTGTAATG 57.766 40.909 0.00 0.00 37.62 1.90
109 110 2.097201 TTGTTGTGGCCGCATGCAAT 62.097 50.000 21.95 0.00 43.89 3.56
110 111 2.696409 CTTGTTGTGGCCGCATGCAA 62.696 55.000 21.95 24.17 43.89 4.08
111 112 3.210223 CTTGTTGTGGCCGCATGCA 62.210 57.895 21.95 18.92 43.89 3.96
118 119 3.081061 TGTATGATGACTTGTTGTGGCC 58.919 45.455 0.00 0.00 0.00 5.36
137 138 3.511540 TGTTTGATCTCCGAGTCTCATGT 59.488 43.478 0.00 0.00 0.00 3.21
148 149 5.408356 AGTATACACGTGTGTTTGATCTCC 58.592 41.667 30.83 7.76 41.83 3.71
166 167 8.991783 AGTACTACAGAGCCAATGTAAGTATA 57.008 34.615 0.00 0.00 32.96 1.47
174 175 5.828859 ACCTAGTAGTACTACAGAGCCAATG 59.171 44.000 29.87 16.54 38.48 2.82
187 188 6.832900 ACTGGGAATGAACTACCTAGTAGTAC 59.167 42.308 7.78 0.00 46.96 2.73
188 189 6.978261 ACTGGGAATGAACTACCTAGTAGTA 58.022 40.000 7.78 0.00 46.96 1.82
190 191 8.480133 AATACTGGGAATGAACTACCTAGTAG 57.520 38.462 0.00 0.23 45.64 2.57
191 192 9.359653 GTAATACTGGGAATGAACTACCTAGTA 57.640 37.037 0.00 0.00 46.17 1.82
192 193 7.842743 TGTAATACTGGGAATGAACTACCTAGT 59.157 37.037 0.00 0.00 45.00 2.57
196 197 6.935208 GGATGTAATACTGGGAATGAACTACC 59.065 42.308 0.00 0.00 0.00 3.18
203 204 3.748048 CAGCGGATGTAATACTGGGAATG 59.252 47.826 0.00 0.00 0.00 2.67
222 223 2.185004 TTTCTACCTTGTGCTCCAGC 57.815 50.000 0.00 0.00 42.50 4.85
234 235 5.615925 TCCTCCTTGCTTCTATTTCTACC 57.384 43.478 0.00 0.00 0.00 3.18
300 303 3.775202 TGACCAACGGTTTGACAAAATG 58.225 40.909 1.27 0.76 35.25 2.32
335 338 3.127548 CCTGTGCACAACTCATATTGACC 59.872 47.826 21.98 0.00 33.57 4.02
353 356 1.717032 TTCACACTCAGCTACCCTGT 58.283 50.000 0.00 0.00 42.38 4.00
358 375 6.986817 ACCATACATAATTCACACTCAGCTAC 59.013 38.462 0.00 0.00 0.00 3.58
375 392 6.826793 GCATCGATGCCATGTAACCATACAT 61.827 44.000 35.11 0.00 46.68 2.29
377 394 4.668576 CATCGATGCCATGTAACCATAC 57.331 45.455 13.37 0.00 0.00 2.39
392 413 1.654105 GACTTTTGACGTCGCATCGAT 59.346 47.619 11.62 0.00 38.42 3.59
453 504 3.408634 TCGATCGATGGTGTATGAGCTA 58.591 45.455 15.15 0.00 0.00 3.32
454 505 2.230660 TCGATCGATGGTGTATGAGCT 58.769 47.619 15.15 0.00 0.00 4.09
455 506 2.706555 TCGATCGATGGTGTATGAGC 57.293 50.000 15.15 0.00 0.00 4.26
458 509 4.703645 ACCTATCGATCGATGGTGTATG 57.296 45.455 32.70 23.09 35.92 2.39
459 510 5.498393 AGTACCTATCGATCGATGGTGTAT 58.502 41.667 36.22 26.57 36.98 2.29
460 511 4.903054 AGTACCTATCGATCGATGGTGTA 58.097 43.478 36.22 30.71 36.98 2.90
461 512 3.752665 AGTACCTATCGATCGATGGTGT 58.247 45.455 36.22 31.40 36.98 4.16
462 513 4.023107 ACAAGTACCTATCGATCGATGGTG 60.023 45.833 36.22 29.02 36.98 4.17
466 517 5.705905 TCATGACAAGTACCTATCGATCGAT 59.294 40.000 31.39 31.39 38.54 3.59
467 518 5.049612 GTCATGACAAGTACCTATCGATCGA 60.050 44.000 21.86 21.86 0.00 3.59
468 519 5.147865 GTCATGACAAGTACCTATCGATCG 58.852 45.833 21.07 9.36 0.00 3.69
469 520 6.017026 TCTGTCATGACAAGTACCTATCGATC 60.017 42.308 27.63 0.00 41.33 3.69
503 557 3.210227 TGTCGCCTGTCATTTTTCTTCA 58.790 40.909 0.00 0.00 0.00 3.02
574 628 6.754193 TCTTCTTCTTCCTCTTCTTCTTCAC 58.246 40.000 0.00 0.00 0.00 3.18
582 636 5.861787 CGTCTTCTTCTTCTTCTTCCTCTTC 59.138 44.000 0.00 0.00 0.00 2.87
583 637 5.536916 TCGTCTTCTTCTTCTTCTTCCTCTT 59.463 40.000 0.00 0.00 0.00 2.85
584 638 5.048294 GTCGTCTTCTTCTTCTTCTTCCTCT 60.048 44.000 0.00 0.00 0.00 3.69
585 639 5.158494 GTCGTCTTCTTCTTCTTCTTCCTC 58.842 45.833 0.00 0.00 0.00 3.71
586 640 4.320641 CGTCGTCTTCTTCTTCTTCTTCCT 60.321 45.833 0.00 0.00 0.00 3.36
587 641 3.915569 CGTCGTCTTCTTCTTCTTCTTCC 59.084 47.826 0.00 0.00 0.00 3.46
622 676 7.611213 TTCCTTCCATCTCTTTTATTTCGAC 57.389 36.000 0.00 0.00 0.00 4.20
624 678 8.730680 TCTTTTCCTTCCATCTCTTTTATTTCG 58.269 33.333 0.00 0.00 0.00 3.46
642 696 3.245016 TGTCATGCCATCTGTCTTTTCCT 60.245 43.478 0.00 0.00 0.00 3.36
643 697 3.084039 TGTCATGCCATCTGTCTTTTCC 58.916 45.455 0.00 0.00 0.00 3.13
662 716 1.615116 CCTTCATCCACCAGTGCATGT 60.615 52.381 1.81 0.00 0.00 3.21
673 727 3.346734 GTGGGCCCCCTTCATCCA 61.347 66.667 22.27 0.00 36.94 3.41
685 739 3.003763 ACTTCCTCCTCGGTGGGC 61.004 66.667 4.36 0.00 36.20 5.36
715 774 6.389906 TGCTTACTCGTATATCATCACCATG 58.610 40.000 0.00 0.00 0.00 3.66
719 778 6.144080 GTGGTTGCTTACTCGTATATCATCAC 59.856 42.308 0.00 0.00 0.00 3.06
730 789 1.625616 CCTACGTGGTTGCTTACTCG 58.374 55.000 0.00 0.00 0.00 4.18
732 791 0.682852 TGCCTACGTGGTTGCTTACT 59.317 50.000 0.00 0.00 38.35 2.24
733 792 0.794473 GTGCCTACGTGGTTGCTTAC 59.206 55.000 0.00 0.00 38.35 2.34
734 793 0.393448 TGTGCCTACGTGGTTGCTTA 59.607 50.000 0.00 0.00 38.35 3.09
735 794 0.884704 CTGTGCCTACGTGGTTGCTT 60.885 55.000 0.00 0.00 38.35 3.91
736 795 1.301716 CTGTGCCTACGTGGTTGCT 60.302 57.895 0.00 0.00 38.35 3.91
737 796 1.291877 CTCTGTGCCTACGTGGTTGC 61.292 60.000 0.00 0.00 38.35 4.17
792 855 2.868583 CCGCTGAGGTCTATCACAAATG 59.131 50.000 0.00 0.00 34.51 2.32
802 865 0.323908 AGAAGTAGCCGCTGAGGTCT 60.324 55.000 2.16 0.00 43.70 3.85
806 869 2.165437 AGAAGAAGAAGTAGCCGCTGAG 59.835 50.000 2.16 0.00 0.00 3.35
807 870 2.164624 GAGAAGAAGAAGTAGCCGCTGA 59.835 50.000 2.16 0.00 0.00 4.26
809 872 2.425668 GAGAGAAGAAGAAGTAGCCGCT 59.574 50.000 0.00 0.00 0.00 5.52
810 873 2.164624 TGAGAGAAGAAGAAGTAGCCGC 59.835 50.000 0.00 0.00 0.00 6.53
812 875 5.590530 TGATGAGAGAAGAAGAAGTAGCC 57.409 43.478 0.00 0.00 0.00 3.93
815 878 7.284261 ACGATGATGATGAGAGAAGAAGAAGTA 59.716 37.037 0.00 0.00 0.00 2.24
816 879 6.096705 ACGATGATGATGAGAGAAGAAGAAGT 59.903 38.462 0.00 0.00 0.00 3.01
817 880 6.506147 ACGATGATGATGAGAGAAGAAGAAG 58.494 40.000 0.00 0.00 0.00 2.85
818 881 6.462552 ACGATGATGATGAGAGAAGAAGAA 57.537 37.500 0.00 0.00 0.00 2.52
844 960 3.190849 CTAGCCCGACGACGACGA 61.191 66.667 20.63 0.11 42.66 4.20
845 961 4.883300 GCTAGCCCGACGACGACG 62.883 72.222 12.66 12.66 42.66 5.12
846 962 3.452024 GAGCTAGCCCGACGACGAC 62.452 68.421 12.13 0.22 42.66 4.34
847 963 3.200593 GAGCTAGCCCGACGACGA 61.201 66.667 12.13 0.00 42.66 4.20
849 965 0.595310 GAATGAGCTAGCCCGACGAC 60.595 60.000 12.13 0.00 0.00 4.34
850 966 1.734137 GAATGAGCTAGCCCGACGA 59.266 57.895 12.13 0.00 0.00 4.20
851 967 1.300233 GGAATGAGCTAGCCCGACG 60.300 63.158 12.13 0.00 0.00 5.12
852 968 0.466124 AAGGAATGAGCTAGCCCGAC 59.534 55.000 12.13 1.43 0.00 4.79
853 969 0.753262 GAAGGAATGAGCTAGCCCGA 59.247 55.000 12.13 0.00 0.00 5.14
855 971 1.135960 AGGAAGGAATGAGCTAGCCC 58.864 55.000 12.13 4.83 0.00 5.19
856 972 2.804933 CGAAGGAAGGAATGAGCTAGCC 60.805 54.545 12.13 3.49 0.00 3.93
857 973 2.478831 CGAAGGAAGGAATGAGCTAGC 58.521 52.381 6.62 6.62 0.00 3.42
878 994 2.085042 GATAGGACCGGGAGCGGAAC 62.085 65.000 6.32 0.00 0.00 3.62
880 996 2.203451 GATAGGACCGGGAGCGGA 60.203 66.667 6.32 0.00 0.00 5.54
881 997 3.303928 GGATAGGACCGGGAGCGG 61.304 72.222 6.32 0.00 0.00 5.52
883 999 1.674057 CATGGATAGGACCGGGAGC 59.326 63.158 6.32 0.00 0.00 4.70
884 1000 1.831652 GCCATGGATAGGACCGGGAG 61.832 65.000 18.40 0.00 31.45 4.30
886 1002 2.750350 GCCATGGATAGGACCGGG 59.250 66.667 18.40 0.00 0.00 5.73
887 1003 2.343758 CGCCATGGATAGGACCGG 59.656 66.667 18.40 0.00 0.00 5.28
888 1004 2.357517 GCGCCATGGATAGGACCG 60.358 66.667 18.40 8.73 0.00 4.79
889 1005 2.357517 CGCGCCATGGATAGGACC 60.358 66.667 18.40 0.00 0.00 4.46
890 1006 1.812686 TACCGCGCCATGGATAGGAC 61.813 60.000 18.40 0.00 0.00 3.85
891 1007 1.532078 TACCGCGCCATGGATAGGA 60.532 57.895 18.40 0.00 0.00 2.94
892 1008 1.374252 GTACCGCGCCATGGATAGG 60.374 63.158 18.40 16.60 0.00 2.57
893 1009 0.388649 GAGTACCGCGCCATGGATAG 60.389 60.000 18.40 6.95 0.00 2.08
894 1010 1.663739 GAGTACCGCGCCATGGATA 59.336 57.895 18.40 0.00 0.00 2.59
895 1011 2.421739 GAGTACCGCGCCATGGAT 59.578 61.111 18.40 0.00 0.00 3.41
909 1025 0.251209 TCAGTAGTGTGGGAGCGAGT 60.251 55.000 0.00 0.00 0.00 4.18
910 1026 0.171455 GTCAGTAGTGTGGGAGCGAG 59.829 60.000 0.00 0.00 0.00 5.03
911 1027 1.248785 GGTCAGTAGTGTGGGAGCGA 61.249 60.000 0.00 0.00 0.00 4.93
913 1029 0.533032 GAGGTCAGTAGTGTGGGAGC 59.467 60.000 0.00 0.00 0.00 4.70
915 1031 1.629043 GTGAGGTCAGTAGTGTGGGA 58.371 55.000 0.00 0.00 0.00 4.37
919 1035 1.147191 TCCAGGTGAGGTCAGTAGTGT 59.853 52.381 0.00 0.00 0.00 3.55
922 1083 0.811915 CGTCCAGGTGAGGTCAGTAG 59.188 60.000 0.00 0.00 0.00 2.57
923 1084 0.402887 TCGTCCAGGTGAGGTCAGTA 59.597 55.000 0.00 0.00 0.00 2.74
933 1094 2.826702 GGTGGTTGTCGTCCAGGT 59.173 61.111 0.00 0.00 35.49 4.00
934 1095 2.357034 CGGTGGTTGTCGTCCAGG 60.357 66.667 0.00 0.00 35.49 4.45
936 1097 4.612412 GGCGGTGGTTGTCGTCCA 62.612 66.667 0.00 0.00 0.00 4.02
938 1099 1.512156 AAATGGCGGTGGTTGTCGTC 61.512 55.000 0.00 0.00 0.00 4.20
939 1100 1.512156 GAAATGGCGGTGGTTGTCGT 61.512 55.000 0.00 0.00 0.00 4.34
944 1105 1.674322 CGAGGAAATGGCGGTGGTT 60.674 57.895 0.00 0.00 0.00 3.67
946 1107 1.153168 ATCGAGGAAATGGCGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
947 1108 1.490693 CGATCGAGGAAATGGCGGTG 61.491 60.000 10.26 0.00 0.00 4.94
948 1109 1.227263 CGATCGAGGAAATGGCGGT 60.227 57.895 10.26 0.00 0.00 5.68
949 1110 2.598632 GCGATCGAGGAAATGGCGG 61.599 63.158 21.57 0.00 0.00 6.13
950 1111 2.598632 GGCGATCGAGGAAATGGCG 61.599 63.158 21.57 0.00 0.00 5.69
951 1112 2.598632 CGGCGATCGAGGAAATGGC 61.599 63.158 21.57 0.00 42.43 4.40
952 1113 2.598632 GCGGCGATCGAGGAAATGG 61.599 63.158 21.57 0.00 42.43 3.16
953 1114 2.598632 GGCGGCGATCGAGGAAATG 61.599 63.158 21.57 0.32 42.43 2.32
954 1115 2.280186 GGCGGCGATCGAGGAAAT 60.280 61.111 21.57 0.00 42.43 2.17
955 1116 4.865761 CGGCGGCGATCGAGGAAA 62.866 66.667 29.19 0.00 42.43 3.13
961 1122 4.647615 AAGGATCGGCGGCGATCG 62.648 66.667 46.36 19.76 43.94 3.69
963 1124 3.227276 AGAAGGATCGGCGGCGAT 61.227 61.111 41.91 41.91 0.00 4.58
964 1125 4.207281 CAGAAGGATCGGCGGCGA 62.207 66.667 36.40 36.40 0.00 5.54
965 1126 2.978452 ATTCAGAAGGATCGGCGGCG 62.978 60.000 27.15 27.15 0.00 6.46
966 1127 1.224722 GATTCAGAAGGATCGGCGGC 61.225 60.000 7.21 0.00 0.00 6.53
967 1128 0.941463 CGATTCAGAAGGATCGGCGG 60.941 60.000 7.21 0.00 33.40 6.13
968 1129 0.249073 ACGATTCAGAAGGATCGGCG 60.249 55.000 10.53 0.00 40.45 6.46
969 1130 2.395654 GTACGATTCAGAAGGATCGGC 58.604 52.381 10.53 0.38 40.45 5.54
970 1131 2.033049 ACGTACGATTCAGAAGGATCGG 59.967 50.000 24.41 0.00 40.45 4.18
971 1132 3.335786 ACGTACGATTCAGAAGGATCG 57.664 47.619 24.41 4.71 41.72 3.69
986 1147 2.169146 GCCATGGCCACGTACGTAC 61.169 63.158 27.24 15.90 34.56 3.67
987 1148 2.184836 GCCATGGCCACGTACGTA 59.815 61.111 27.24 5.72 34.56 3.57
1686 1862 2.028190 CCAGCGTCTCCTATGCCG 59.972 66.667 0.00 0.00 41.39 5.69
1689 1865 2.659897 GCGCCAGCGTCTCCTATG 60.660 66.667 14.22 0.00 42.09 2.23
1690 1866 3.917760 GGCGCCAGCGTCTCCTAT 61.918 66.667 24.80 0.00 46.35 2.57
1700 1876 3.274586 CATCATCACCGGCGCCAG 61.275 66.667 28.98 19.42 0.00 4.85
1703 1879 3.945434 CAGCATCATCACCGGCGC 61.945 66.667 0.00 0.00 0.00 6.53
1704 1880 3.274586 CCAGCATCATCACCGGCG 61.275 66.667 0.00 0.00 0.00 6.46
1705 1881 2.124570 ACCAGCATCATCACCGGC 60.125 61.111 0.00 0.00 0.00 6.13
1706 1882 2.475466 GCACCAGCATCATCACCGG 61.475 63.158 0.00 0.00 41.58 5.28
1707 1883 1.450848 AGCACCAGCATCATCACCG 60.451 57.895 0.00 0.00 45.49 4.94
1708 1884 2.001361 GCAGCACCAGCATCATCACC 62.001 60.000 0.00 0.00 45.49 4.02
1709 1885 1.030488 AGCAGCACCAGCATCATCAC 61.030 55.000 0.00 0.00 45.49 3.06
1734 1910 2.099427 CCGGTCCAGCTTAGAGTTAGAC 59.901 54.545 0.00 0.00 0.00 2.59
1741 1917 2.656069 GGTGCCGGTCCAGCTTAGA 61.656 63.158 1.90 0.00 0.00 2.10
1764 1946 3.366915 TCCGACACCACGATGCGA 61.367 61.111 0.00 0.00 35.09 5.10
1909 2097 3.955101 CGGCGGCTCGTCTCCTAG 61.955 72.222 7.61 0.00 0.00 3.02
1936 2124 2.202756 GTGATCGTCTCGGTGGCC 60.203 66.667 0.00 0.00 0.00 5.36
1937 2125 2.579787 CGTGATCGTCTCGGTGGC 60.580 66.667 0.00 0.00 30.65 5.01
1938 2126 1.226323 GTCGTGATCGTCTCGGTGG 60.226 63.158 8.72 0.00 34.54 4.61
1963 2163 1.667724 CTCAATCTCAATGGACACGCC 59.332 52.381 0.00 0.00 37.10 5.68
1966 2166 4.478206 TCCTCTCAATCTCAATGGACAC 57.522 45.455 0.00 0.00 0.00 3.67
2042 2242 1.823169 GCACCCTCCAAGTCCACGTA 61.823 60.000 0.00 0.00 0.00 3.57
2043 2243 3.148084 CACCCTCCAAGTCCACGT 58.852 61.111 0.00 0.00 0.00 4.49
2044 2244 2.358737 GCACCCTCCAAGTCCACG 60.359 66.667 0.00 0.00 0.00 4.94
2045 2245 2.358737 CGCACCCTCCAAGTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
2046 2246 3.636231 CCGCACCCTCCAAGTCCA 61.636 66.667 0.00 0.00 0.00 4.02
2076 2276 4.129737 ACCGACGATGGCTCCACG 62.130 66.667 0.00 8.56 0.00 4.94
2133 2333 1.652563 CCGCACGATCTCCGACATA 59.347 57.895 0.00 0.00 41.76 2.29
2245 2448 3.847602 CTCCCTGCTCCTGCTCCG 61.848 72.222 0.00 0.00 40.48 4.63
2246 2449 3.478274 CCTCCCTGCTCCTGCTCC 61.478 72.222 0.00 0.00 40.48 4.70
2247 2450 2.364842 TCCTCCCTGCTCCTGCTC 60.365 66.667 0.00 0.00 40.48 4.26
2248 2451 2.365370 CTCCTCCCTGCTCCTGCT 60.365 66.667 0.00 0.00 40.48 4.24
2249 2452 3.478274 CCTCCTCCCTGCTCCTGC 61.478 72.222 0.00 0.00 40.20 4.85
2325 2540 0.466543 ATTGATAGCGCCCACCGTTA 59.533 50.000 2.29 0.00 39.71 3.18
2326 2541 0.814010 GATTGATAGCGCCCACCGTT 60.814 55.000 2.29 0.00 39.71 4.44
2327 2542 1.227556 GATTGATAGCGCCCACCGT 60.228 57.895 2.29 0.00 39.71 4.83
2328 2543 0.813610 TTGATTGATAGCGCCCACCG 60.814 55.000 2.29 0.00 40.75 4.94
2329 2544 1.537202 GATTGATTGATAGCGCCCACC 59.463 52.381 2.29 0.00 0.00 4.61
2331 2546 2.636647 TGATTGATTGATAGCGCCCA 57.363 45.000 2.29 0.00 0.00 5.36
2332 2547 3.503363 TCATTGATTGATTGATAGCGCCC 59.497 43.478 2.29 0.00 0.00 6.13
2334 2549 6.376177 TGATTCATTGATTGATTGATAGCGC 58.624 36.000 0.00 0.00 33.34 5.92
2335 2550 7.534239 CACTGATTCATTGATTGATTGATAGCG 59.466 37.037 0.00 0.00 33.34 4.26
2336 2551 8.565416 TCACTGATTCATTGATTGATTGATAGC 58.435 33.333 2.81 0.00 33.34 2.97
2338 2553 9.623000 ACTCACTGATTCATTGATTGATTGATA 57.377 29.630 7.11 0.00 33.34 2.15
2353 2568 6.162079 TGATCTTTGACTCACTCACTGATTC 58.838 40.000 0.00 0.00 0.00 2.52
2376 2591 3.943381 TGAGCTAGCACTGGATTGATTTG 59.057 43.478 18.83 0.00 0.00 2.32
2390 2610 1.377536 CTTGCCTTCCTTGAGCTAGC 58.622 55.000 6.62 6.62 0.00 3.42
2391 2611 1.339438 TGCTTGCCTTCCTTGAGCTAG 60.339 52.381 0.00 0.00 34.56 3.42
2392 2612 0.692476 TGCTTGCCTTCCTTGAGCTA 59.308 50.000 0.00 0.00 34.56 3.32
2393 2613 0.608582 CTGCTTGCCTTCCTTGAGCT 60.609 55.000 0.00 0.00 34.56 4.09
2427 2647 2.012937 TCTCTTCTCGTCGTCCTCTC 57.987 55.000 0.00 0.00 0.00 3.20
2428 2648 2.027929 TCTTCTCTTCTCGTCGTCCTCT 60.028 50.000 0.00 0.00 0.00 3.69
2432 2652 4.339429 CATCTTCTTCTCTTCTCGTCGTC 58.661 47.826 0.00 0.00 0.00 4.20
2433 2653 3.127895 CCATCTTCTTCTCTTCTCGTCGT 59.872 47.826 0.00 0.00 0.00 4.34
2434 2654 3.127895 ACCATCTTCTTCTCTTCTCGTCG 59.872 47.826 0.00 0.00 0.00 5.12
2435 2655 4.156922 TCACCATCTTCTTCTCTTCTCGTC 59.843 45.833 0.00 0.00 0.00 4.20
2437 2657 4.710423 TCACCATCTTCTTCTCTTCTCG 57.290 45.455 0.00 0.00 0.00 4.04
2439 2659 5.957168 TGAGATCACCATCTTCTTCTCTTCT 59.043 40.000 0.00 0.00 39.71 2.85
2442 2674 8.369424 CAATATGAGATCACCATCTTCTTCTCT 58.631 37.037 4.20 0.00 39.71 3.10
2465 2697 4.403113 TCAATACATGCCTTGATGTGCAAT 59.597 37.500 6.47 0.00 41.50 3.56
2478 2716 3.253188 ACACACAACCAGTCAATACATGC 59.747 43.478 0.00 0.00 0.00 4.06
2506 2744 7.428020 AGCCTATGCACAATTGTATTGTATTG 58.572 34.615 11.53 5.58 41.13 1.90
2507 2745 7.587037 AGCCTATGCACAATTGTATTGTATT 57.413 32.000 11.53 0.00 41.13 1.89
2508 2746 7.094634 GCTAGCCTATGCACAATTGTATTGTAT 60.095 37.037 11.53 7.03 41.13 2.29
2550 2793 4.071961 ACTAGTAATTCCATGCATCGCA 57.928 40.909 0.00 0.00 44.86 5.10
2551 2794 5.696724 AGTAACTAGTAATTCCATGCATCGC 59.303 40.000 0.00 0.00 0.00 4.58
2552 2795 7.865889 TGTAGTAACTAGTAATTCCATGCATCG 59.134 37.037 0.00 0.00 0.00 3.84
2553 2796 9.542462 TTGTAGTAACTAGTAATTCCATGCATC 57.458 33.333 0.00 0.00 0.00 3.91
2613 2856 6.859112 TGCTCCTCTGTCTCTAGTAAATTT 57.141 37.500 0.00 0.00 0.00 1.82
2614 2857 6.211584 TGTTGCTCCTCTGTCTCTAGTAAATT 59.788 38.462 0.00 0.00 0.00 1.82
2616 2859 5.077564 TGTTGCTCCTCTGTCTCTAGTAAA 58.922 41.667 0.00 0.00 0.00 2.01
2618 2861 4.302559 TGTTGCTCCTCTGTCTCTAGTA 57.697 45.455 0.00 0.00 0.00 1.82
2619 2862 3.162147 TGTTGCTCCTCTGTCTCTAGT 57.838 47.619 0.00 0.00 0.00 2.57
2621 2864 3.761218 CTCTTGTTGCTCCTCTGTCTCTA 59.239 47.826 0.00 0.00 0.00 2.43
2627 2870 0.979665 TCCCTCTTGTTGCTCCTCTG 59.020 55.000 0.00 0.00 0.00 3.35
2633 2876 1.661463 TCATCCTCCCTCTTGTTGCT 58.339 50.000 0.00 0.00 0.00 3.91
2634 2877 2.295885 CATCATCCTCCCTCTTGTTGC 58.704 52.381 0.00 0.00 0.00 4.17
2637 2915 2.837947 TGACATCATCCTCCCTCTTGT 58.162 47.619 0.00 0.00 0.00 3.16
2638 2916 3.539604 GTTGACATCATCCTCCCTCTTG 58.460 50.000 0.00 0.00 0.00 3.02
2640 2918 1.759445 CGTTGACATCATCCTCCCTCT 59.241 52.381 0.00 0.00 0.00 3.69
2645 2923 1.766143 GCGGCGTTGACATCATCCTC 61.766 60.000 9.37 0.00 0.00 3.71
2650 2928 4.365505 TCGGCGGCGTTGACATCA 62.366 61.111 31.06 6.10 0.00 3.07
2674 2952 8.979574 CCATCTTATTTCTTTACATACGGAGAC 58.020 37.037 0.00 0.00 0.00 3.36
2675 2953 8.701895 ACCATCTTATTTCTTTACATACGGAGA 58.298 33.333 0.00 0.00 0.00 3.71
2676 2954 8.888579 ACCATCTTATTTCTTTACATACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
2716 2994 3.782893 CGATTTACTCGTCGTGGTAAGAC 59.217 47.826 11.14 9.37 42.56 3.01
2718 2996 3.103738 CCGATTTACTCGTCGTGGTAAG 58.896 50.000 11.14 0.00 46.18 2.34
2719 2997 2.746904 TCCGATTTACTCGTCGTGGTAA 59.253 45.455 8.59 8.59 46.18 2.85
2720 2998 2.352651 CTCCGATTTACTCGTCGTGGTA 59.647 50.000 0.00 0.00 46.18 3.25
2721 2999 1.131883 CTCCGATTTACTCGTCGTGGT 59.868 52.381 0.00 0.00 46.18 4.16
2722 3000 1.823828 CTCCGATTTACTCGTCGTGG 58.176 55.000 0.00 0.00 46.18 4.94
2723 3001 1.189403 GCTCCGATTTACTCGTCGTG 58.811 55.000 0.00 0.00 46.18 4.35
2724 3002 0.247974 CGCTCCGATTTACTCGTCGT 60.248 55.000 0.00 0.00 46.18 4.34
2725 3003 0.928908 CCGCTCCGATTTACTCGTCG 60.929 60.000 0.00 0.00 46.18 5.12
2726 3004 0.379669 TCCGCTCCGATTTACTCGTC 59.620 55.000 0.00 0.00 46.18 4.20
2727 3005 0.381089 CTCCGCTCCGATTTACTCGT 59.619 55.000 0.00 0.00 46.18 4.18
2729 3007 0.032267 CCCTCCGCTCCGATTTACTC 59.968 60.000 0.00 0.00 0.00 2.59
2730 3008 0.396695 TCCCTCCGCTCCGATTTACT 60.397 55.000 0.00 0.00 0.00 2.24
2731 3009 0.032267 CTCCCTCCGCTCCGATTTAC 59.968 60.000 0.00 0.00 0.00 2.01
2732 3010 0.396695 ACTCCCTCCGCTCCGATTTA 60.397 55.000 0.00 0.00 0.00 1.40
2733 3011 0.396695 TACTCCCTCCGCTCCGATTT 60.397 55.000 0.00 0.00 0.00 2.17
2734 3012 0.824182 CTACTCCCTCCGCTCCGATT 60.824 60.000 0.00 0.00 0.00 3.34
2735 3013 1.228306 CTACTCCCTCCGCTCCGAT 60.228 63.158 0.00 0.00 0.00 4.18
2736 3014 2.192443 CTACTCCCTCCGCTCCGA 59.808 66.667 0.00 0.00 0.00 4.55
2737 3015 2.335092 TACCTACTCCCTCCGCTCCG 62.335 65.000 0.00 0.00 0.00 4.63
2738 3016 0.537828 CTACCTACTCCCTCCGCTCC 60.538 65.000 0.00 0.00 0.00 4.70
2739 3017 0.537828 CCTACCTACTCCCTCCGCTC 60.538 65.000 0.00 0.00 0.00 5.03
2740 3018 0.992431 TCCTACCTACTCCCTCCGCT 60.992 60.000 0.00 0.00 0.00 5.52
2741 3019 0.106318 TTCCTACCTACTCCCTCCGC 60.106 60.000 0.00 0.00 0.00 5.54
2742 3020 1.479021 CCTTCCTACCTACTCCCTCCG 60.479 61.905 0.00 0.00 0.00 4.63
2743 3021 1.133104 CCCTTCCTACCTACTCCCTCC 60.133 61.905 0.00 0.00 0.00 4.30
2744 3022 1.758482 GCCCTTCCTACCTACTCCCTC 60.758 61.905 0.00 0.00 0.00 4.30
2745 3023 0.265254 GCCCTTCCTACCTACTCCCT 59.735 60.000 0.00 0.00 0.00 4.20
2746 3024 1.114119 CGCCCTTCCTACCTACTCCC 61.114 65.000 0.00 0.00 0.00 4.30
2747 3025 1.746322 GCGCCCTTCCTACCTACTCC 61.746 65.000 0.00 0.00 0.00 3.85
2748 3026 0.756070 AGCGCCCTTCCTACCTACTC 60.756 60.000 2.29 0.00 0.00 2.59
2749 3027 0.554792 TAGCGCCCTTCCTACCTACT 59.445 55.000 2.29 0.00 0.00 2.57
2750 3028 1.340568 CTTAGCGCCCTTCCTACCTAC 59.659 57.143 2.29 0.00 0.00 3.18
2751 3029 1.700955 CTTAGCGCCCTTCCTACCTA 58.299 55.000 2.29 0.00 0.00 3.08
2752 3030 1.687297 GCTTAGCGCCCTTCCTACCT 61.687 60.000 2.29 0.00 0.00 3.08
2753 3031 1.227586 GCTTAGCGCCCTTCCTACC 60.228 63.158 2.29 0.00 0.00 3.18
2754 3032 1.038280 TAGCTTAGCGCCCTTCCTAC 58.962 55.000 2.29 0.00 40.39 3.18
2755 3033 1.893801 GATAGCTTAGCGCCCTTCCTA 59.106 52.381 2.29 0.00 40.39 2.94
2756 3034 0.682292 GATAGCTTAGCGCCCTTCCT 59.318 55.000 2.29 0.00 40.39 3.36
2757 3035 0.393077 TGATAGCTTAGCGCCCTTCC 59.607 55.000 2.29 0.00 40.39 3.46
2758 3036 2.240493 TTGATAGCTTAGCGCCCTTC 57.760 50.000 2.29 0.00 40.39 3.46
2759 3037 2.104792 TGATTGATAGCTTAGCGCCCTT 59.895 45.455 2.29 0.00 40.39 3.95
2760 3038 1.694150 TGATTGATAGCTTAGCGCCCT 59.306 47.619 2.29 0.00 40.39 5.19
2761 3039 2.169832 TGATTGATAGCTTAGCGCCC 57.830 50.000 2.29 0.00 40.39 6.13
2762 3040 3.748048 TGATTGATTGATAGCTTAGCGCC 59.252 43.478 2.29 0.00 40.39 6.53
2763 3041 4.997905 TGATTGATTGATAGCTTAGCGC 57.002 40.909 0.00 0.00 39.57 5.92
2764 3042 6.775939 TCTTGATTGATTGATAGCTTAGCG 57.224 37.500 0.00 0.00 0.00 4.26
2765 3043 8.781196 TGAATCTTGATTGATTGATAGCTTAGC 58.219 33.333 0.00 0.00 36.86 3.09
2794 3072 9.323985 CATCACTAGCTAGCTAATCTTTTCTTT 57.676 33.333 24.20 0.00 0.00 2.52
2797 3075 6.147000 GCCATCACTAGCTAGCTAATCTTTTC 59.853 42.308 24.20 9.11 0.00 2.29
2798 3076 5.994668 GCCATCACTAGCTAGCTAATCTTTT 59.005 40.000 24.20 5.94 0.00 2.27
2800 3078 4.590647 TGCCATCACTAGCTAGCTAATCTT 59.409 41.667 24.20 8.26 0.00 2.40
2801 3079 4.155709 TGCCATCACTAGCTAGCTAATCT 58.844 43.478 24.20 8.01 0.00 2.40
2802 3080 4.527509 TGCCATCACTAGCTAGCTAATC 57.472 45.455 24.20 4.07 0.00 1.75
2803 3081 4.963318 TTGCCATCACTAGCTAGCTAAT 57.037 40.909 24.20 13.17 0.00 1.73
2804 3082 4.963318 ATTGCCATCACTAGCTAGCTAA 57.037 40.909 24.20 11.24 0.00 3.09
2805 3083 4.344968 TGAATTGCCATCACTAGCTAGCTA 59.655 41.667 22.85 22.85 0.00 3.32
2806 3084 3.135348 TGAATTGCCATCACTAGCTAGCT 59.865 43.478 23.12 23.12 0.00 3.32
2807 3085 3.470709 TGAATTGCCATCACTAGCTAGC 58.529 45.455 20.91 6.62 0.00 3.42
2808 3086 3.497640 GCTGAATTGCCATCACTAGCTAG 59.502 47.826 19.44 19.44 0.00 3.42
2809 3087 3.118298 TGCTGAATTGCCATCACTAGCTA 60.118 43.478 0.00 0.00 0.00 3.32
2810 3088 2.295885 GCTGAATTGCCATCACTAGCT 58.704 47.619 0.00 0.00 0.00 3.32
2811 3089 2.019249 TGCTGAATTGCCATCACTAGC 58.981 47.619 0.00 0.00 0.00 3.42
2812 3090 3.550233 GCATGCTGAATTGCCATCACTAG 60.550 47.826 11.37 0.00 32.66 2.57
2813 3091 2.359848 GCATGCTGAATTGCCATCACTA 59.640 45.455 11.37 0.00 32.66 2.74
2814 3092 1.136305 GCATGCTGAATTGCCATCACT 59.864 47.619 11.37 0.00 32.66 3.41
2815 3093 1.134936 TGCATGCTGAATTGCCATCAC 60.135 47.619 20.33 0.00 38.08 3.06
2816 3094 1.187087 TGCATGCTGAATTGCCATCA 58.813 45.000 20.33 0.00 38.08 3.07
2817 3095 2.135139 CATGCATGCTGAATTGCCATC 58.865 47.619 20.33 0.00 38.08 3.51
2818 3096 2.238942 CATGCATGCTGAATTGCCAT 57.761 45.000 20.33 0.00 38.08 4.40
2819 3097 3.750828 CATGCATGCTGAATTGCCA 57.249 47.368 20.33 0.00 38.08 4.92
2831 3109 3.322369 CTGTGTTTGAACATGCATGCAT 58.678 40.909 27.46 27.46 41.59 3.96
2832 3110 2.745102 CTGTGTTTGAACATGCATGCA 58.255 42.857 26.53 25.04 41.59 3.96
2833 3111 1.458064 GCTGTGTTTGAACATGCATGC 59.542 47.619 26.53 11.82 41.59 4.06
2834 3112 2.745102 TGCTGTGTTTGAACATGCATG 58.255 42.857 25.09 25.09 42.11 4.06
2835 3113 3.671008 ATGCTGTGTTTGAACATGCAT 57.329 38.095 22.50 22.50 46.44 3.96
2836 3114 2.361438 TGATGCTGTGTTTGAACATGCA 59.639 40.909 20.85 20.85 46.63 3.96
2837 3115 3.015934 TGATGCTGTGTTTGAACATGC 57.984 42.857 13.86 13.86 41.59 4.06
2838 3116 5.055642 AGATGATGCTGTGTTTGAACATG 57.944 39.130 0.00 0.00 41.59 3.21
2839 3117 5.475909 AGAAGATGATGCTGTGTTTGAACAT 59.524 36.000 0.00 0.00 41.59 2.71
2840 3118 4.823442 AGAAGATGATGCTGTGTTTGAACA 59.177 37.500 0.00 0.00 36.38 3.18
2841 3119 5.368256 AGAAGATGATGCTGTGTTTGAAC 57.632 39.130 0.00 0.00 0.00 3.18
2842 3120 5.532032 TGAAGAAGATGATGCTGTGTTTGAA 59.468 36.000 0.00 0.00 0.00 2.69
2843 3121 5.065235 TGAAGAAGATGATGCTGTGTTTGA 58.935 37.500 0.00 0.00 0.00 2.69
2844 3122 5.366829 TGAAGAAGATGATGCTGTGTTTG 57.633 39.130 0.00 0.00 0.00 2.93
2845 3123 5.766670 TCTTGAAGAAGATGATGCTGTGTTT 59.233 36.000 0.00 0.00 32.98 2.83
2846 3124 5.311265 TCTTGAAGAAGATGATGCTGTGTT 58.689 37.500 0.00 0.00 32.98 3.32
2847 3125 4.903054 TCTTGAAGAAGATGATGCTGTGT 58.097 39.130 0.00 0.00 32.98 3.72
2848 3126 6.093633 TCAATCTTGAAGAAGATGATGCTGTG 59.906 38.462 0.00 0.00 46.45 3.66
2849 3127 6.178324 TCAATCTTGAAGAAGATGATGCTGT 58.822 36.000 0.00 0.00 46.45 4.40
2850 3128 6.679327 TCAATCTTGAAGAAGATGATGCTG 57.321 37.500 0.00 0.00 46.45 4.41
2851 3129 6.203145 CGATCAATCTTGAAGAAGATGATGCT 59.797 38.462 19.44 4.24 46.45 3.79
2852 3130 6.364261 CGATCAATCTTGAAGAAGATGATGC 58.636 40.000 19.44 12.76 46.45 3.91
2853 3131 6.364261 GCGATCAATCTTGAAGAAGATGATG 58.636 40.000 19.44 14.35 46.45 3.07
2854 3132 5.469421 GGCGATCAATCTTGAAGAAGATGAT 59.531 40.000 15.31 15.86 46.45 2.45
2855 3133 4.813161 GGCGATCAATCTTGAAGAAGATGA 59.187 41.667 15.31 12.58 46.45 2.92
2856 3134 4.318618 CGGCGATCAATCTTGAAGAAGATG 60.319 45.833 15.31 8.41 46.45 2.90
2858 3136 3.190079 CGGCGATCAATCTTGAAGAAGA 58.810 45.455 0.00 0.83 42.53 2.87
2859 3137 2.932614 ACGGCGATCAATCTTGAAGAAG 59.067 45.455 16.62 0.00 41.13 2.85
2860 3138 2.672874 CACGGCGATCAATCTTGAAGAA 59.327 45.455 16.62 0.00 41.13 2.52
2861 3139 2.270923 CACGGCGATCAATCTTGAAGA 58.729 47.619 16.62 0.00 41.13 2.87
2862 3140 1.267732 GCACGGCGATCAATCTTGAAG 60.268 52.381 16.62 0.00 41.13 3.02
2863 3141 0.726827 GCACGGCGATCAATCTTGAA 59.273 50.000 16.62 0.00 41.13 2.69
2864 3142 0.390998 TGCACGGCGATCAATCTTGA 60.391 50.000 16.62 0.00 42.14 3.02
2865 3143 0.247814 GTGCACGGCGATCAATCTTG 60.248 55.000 16.62 0.00 0.00 3.02
2876 3154 0.310543 TTGAACTTGATGTGCACGGC 59.689 50.000 13.13 7.09 33.02 5.68
2878 3156 2.032054 ACACTTGAACTTGATGTGCACG 59.968 45.455 13.13 0.00 33.02 5.34
2891 3169 5.376625 AGACTTTTGGATGCTACACTTGAA 58.623 37.500 0.00 0.00 0.00 2.69
2892 3170 4.973168 AGACTTTTGGATGCTACACTTGA 58.027 39.130 0.00 0.00 0.00 3.02
2893 3171 5.335191 GGAAGACTTTTGGATGCTACACTTG 60.335 44.000 0.00 0.00 0.00 3.16
2894 3172 4.762251 GGAAGACTTTTGGATGCTACACTT 59.238 41.667 0.00 0.00 0.00 3.16
2895 3173 4.327680 GGAAGACTTTTGGATGCTACACT 58.672 43.478 0.00 0.00 0.00 3.55
2896 3174 3.440522 GGGAAGACTTTTGGATGCTACAC 59.559 47.826 0.00 0.00 0.00 2.90
2897 3175 3.561313 GGGGAAGACTTTTGGATGCTACA 60.561 47.826 0.00 0.00 0.00 2.74
2938 3216 4.290942 ACAGGATTTTACAACCAACCCAA 58.709 39.130 0.00 0.00 0.00 4.12
2939 3217 3.917300 ACAGGATTTTACAACCAACCCA 58.083 40.909 0.00 0.00 0.00 4.51
2940 3218 4.948341 AACAGGATTTTACAACCAACCC 57.052 40.909 0.00 0.00 0.00 4.11
2941 3219 6.156748 AGAAACAGGATTTTACAACCAACC 57.843 37.500 0.00 0.00 0.00 3.77
2942 3220 6.040504 AGGAGAAACAGGATTTTACAACCAAC 59.959 38.462 0.00 0.00 0.00 3.77
2959 3237 2.361737 GGCCAGCCCAGGAGAAAC 60.362 66.667 0.00 0.00 0.00 2.78
2970 3248 1.742268 GAAGACTTCTCATTGGCCAGC 59.258 52.381 5.11 0.00 0.00 4.85
2971 3249 2.026449 AGGAAGACTTCTCATTGGCCAG 60.026 50.000 14.72 0.00 0.00 4.85
2972 3250 1.988107 AGGAAGACTTCTCATTGGCCA 59.012 47.619 14.72 0.00 0.00 5.36
2973 3251 2.797177 AGGAAGACTTCTCATTGGCC 57.203 50.000 14.72 0.00 0.00 5.36
2974 3252 5.392487 GCTAAAAGGAAGACTTCTCATTGGC 60.392 44.000 14.72 14.63 38.85 4.52
2982 3260 1.738350 GGCGGCTAAAAGGAAGACTTC 59.262 52.381 6.66 6.66 38.85 3.01
2992 3270 7.971183 ATTCTTTAATTTTTGGCGGCTAAAA 57.029 28.000 27.38 27.38 0.00 1.52
2996 3279 5.994668 TCAAATTCTTTAATTTTTGGCGGCT 59.005 32.000 11.43 0.00 41.50 5.52
2997 3280 6.234723 TCAAATTCTTTAATTTTTGGCGGC 57.765 33.333 0.00 0.00 41.50 6.53
3009 3292 6.647334 TGCATGTTCACCTCAAATTCTTTA 57.353 33.333 0.00 0.00 0.00 1.85
3012 3295 4.768448 TCATGCATGTTCACCTCAAATTCT 59.232 37.500 25.43 0.00 0.00 2.40
3013 3296 5.063180 TCATGCATGTTCACCTCAAATTC 57.937 39.130 25.43 0.00 0.00 2.17
3066 3353 9.453572 TTGCTGTCAGATTAAAATCATTACTCT 57.546 29.630 3.32 0.00 37.89 3.24
3095 3382 3.201487 TCTCAATTGCCTCCTCACATGAT 59.799 43.478 0.00 0.00 0.00 2.45
3108 3395 7.781548 ATTATTGCATCCTTTTCTCAATTGC 57.218 32.000 0.00 0.00 0.00 3.56
3116 3403 5.985530 GGCTACCAATTATTGCATCCTTTTC 59.014 40.000 0.00 0.00 0.00 2.29
3121 3408 3.256631 CCTGGCTACCAATTATTGCATCC 59.743 47.826 0.00 0.00 30.80 3.51
3207 3494 9.896645 AGAGGTGCATCCAAATTATATACATAG 57.103 33.333 0.00 0.00 39.02 2.23
3217 3511 2.225091 TGGTGAGAGGTGCATCCAAATT 60.225 45.455 0.00 0.00 39.02 1.82
3262 3563 7.658575 TGTTGGCCGGTCTAATATACTAATTTC 59.341 37.037 7.97 0.00 0.00 2.17
3263 3564 7.511268 TGTTGGCCGGTCTAATATACTAATTT 58.489 34.615 7.97 0.00 0.00 1.82
3264 3565 7.069877 TGTTGGCCGGTCTAATATACTAATT 57.930 36.000 7.97 0.00 0.00 1.40
3302 3603 6.043411 GGTACTAGTTGTAATTCTCAGCCAG 58.957 44.000 0.00 0.00 32.25 4.85
3303 3604 5.720041 AGGTACTAGTTGTAATTCTCAGCCA 59.280 40.000 0.00 0.00 36.02 4.75
3305 3606 5.520649 GCAGGTACTAGTTGTAATTCTCAGC 59.479 44.000 0.00 0.00 36.02 4.26
3306 3607 6.631016 TGCAGGTACTAGTTGTAATTCTCAG 58.369 40.000 0.00 0.00 36.02 3.35
3308 3609 7.010552 CACATGCAGGTACTAGTTGTAATTCTC 59.989 40.741 2.51 0.00 36.02 2.87
3311 3612 5.880332 CCACATGCAGGTACTAGTTGTAATT 59.120 40.000 2.51 0.00 36.02 1.40
3314 3615 3.835978 ACCACATGCAGGTACTAGTTGTA 59.164 43.478 2.51 0.00 37.67 2.41
3315 3616 2.637872 ACCACATGCAGGTACTAGTTGT 59.362 45.455 2.51 0.00 37.67 3.32
3316 3617 3.334583 ACCACATGCAGGTACTAGTTG 57.665 47.619 2.51 0.00 37.67 3.16
3317 3618 3.559171 CCAACCACATGCAGGTACTAGTT 60.559 47.826 2.51 3.14 38.76 2.24
3318 3619 2.027192 CCAACCACATGCAGGTACTAGT 60.027 50.000 2.51 0.00 38.76 2.57
3319 3620 2.632377 CCAACCACATGCAGGTACTAG 58.368 52.381 2.51 0.00 38.76 2.57
3320 3621 1.339631 GCCAACCACATGCAGGTACTA 60.340 52.381 2.51 0.00 38.76 1.82
3321 3622 0.609131 GCCAACCACATGCAGGTACT 60.609 55.000 2.51 0.00 38.76 2.73
3322 3623 0.609131 AGCCAACCACATGCAGGTAC 60.609 55.000 2.51 4.62 38.76 3.34
3323 3624 0.608856 CAGCCAACCACATGCAGGTA 60.609 55.000 2.51 0.00 38.76 3.08
3324 3625 1.904865 CAGCCAACCACATGCAGGT 60.905 57.895 0.00 0.00 42.34 4.00
3358 3668 6.183360 GCTGTTTGTTTGTGCATACATACATG 60.183 38.462 16.74 13.43 44.44 3.21
3378 3688 9.686683 ACCTATTTGTAATCTAATCTTGCTGTT 57.313 29.630 0.00 0.00 0.00 3.16
3382 3692 9.220767 CCCTACCTATTTGTAATCTAATCTTGC 57.779 37.037 0.00 0.00 0.00 4.01
3385 3695 9.448587 ACACCCTACCTATTTGTAATCTAATCT 57.551 33.333 0.00 0.00 0.00 2.40
3386 3696 9.490379 CACACCCTACCTATTTGTAATCTAATC 57.510 37.037 0.00 0.00 0.00 1.75
3387 3697 8.999895 ACACACCCTACCTATTTGTAATCTAAT 58.000 33.333 0.00 0.00 0.00 1.73
3388 3698 8.262227 CACACACCCTACCTATTTGTAATCTAA 58.738 37.037 0.00 0.00 0.00 2.10
3389 3699 7.634210 GCACACACCCTACCTATTTGTAATCTA 60.634 40.741 0.00 0.00 0.00 1.98
3406 3716 4.796038 TTAACTAGTCTAGCACACACCC 57.204 45.455 6.81 0.00 0.00 4.61
3407 3717 5.063564 GCAATTAACTAGTCTAGCACACACC 59.936 44.000 6.81 0.00 0.00 4.16
3408 3718 5.869888 AGCAATTAACTAGTCTAGCACACAC 59.130 40.000 6.81 0.00 0.00 3.82
3409 3719 6.037786 AGCAATTAACTAGTCTAGCACACA 57.962 37.500 6.81 0.00 0.00 3.72
3410 3720 6.590292 TCAAGCAATTAACTAGTCTAGCACAC 59.410 38.462 6.81 0.00 0.00 3.82
3411 3721 6.697395 TCAAGCAATTAACTAGTCTAGCACA 58.303 36.000 6.81 0.00 0.00 4.57
3412 3722 7.278868 ACATCAAGCAATTAACTAGTCTAGCAC 59.721 37.037 6.81 0.00 0.00 4.40
3414 3724 7.778470 ACATCAAGCAATTAACTAGTCTAGC 57.222 36.000 6.81 0.00 0.00 3.42
3417 3727 8.531982 TGACTACATCAAGCAATTAACTAGTCT 58.468 33.333 0.00 0.00 33.02 3.24
3432 3742 9.624697 GCAAGTTGAATTATTTGACTACATCAA 57.375 29.630 7.16 0.00 45.92 2.57
3433 3743 9.013229 AGCAAGTTGAATTATTTGACTACATCA 57.987 29.630 7.16 0.00 34.65 3.07
3434 3744 9.846248 AAGCAAGTTGAATTATTTGACTACATC 57.154 29.630 7.16 0.00 0.00 3.06
3558 3884 2.020181 GCATCATCCATGACAGGTGCA 61.020 52.381 10.35 0.00 38.37 4.57
3559 3885 0.666913 GCATCATCCATGACAGGTGC 59.333 55.000 0.00 0.00 40.03 5.01
3560 3886 1.674441 GTGCATCATCCATGACAGGTG 59.326 52.381 0.00 0.00 40.03 4.00
3561 3887 1.409241 GGTGCATCATCCATGACAGGT 60.409 52.381 0.00 0.00 40.03 4.00
3562 3888 1.315690 GGTGCATCATCCATGACAGG 58.684 55.000 0.00 0.00 40.03 4.00
3563 3889 1.947456 CTGGTGCATCATCCATGACAG 59.053 52.381 0.00 0.00 40.03 3.51
3565 3891 2.336945 TCTGGTGCATCATCCATGAC 57.663 50.000 0.00 0.00 40.03 3.06
3566 3892 4.921644 ATATCTGGTGCATCATCCATGA 57.078 40.909 0.00 0.00 41.70 3.07
3567 3893 6.178324 AGTAATATCTGGTGCATCATCCATG 58.822 40.000 0.00 0.00 33.01 3.66
3568 3894 6.384342 AGTAATATCTGGTGCATCATCCAT 57.616 37.500 0.00 0.00 33.01 3.41
3569 3895 5.830799 AGTAATATCTGGTGCATCATCCA 57.169 39.130 0.00 0.00 0.00 3.41
3570 3896 7.175347 TCTAGTAATATCTGGTGCATCATCC 57.825 40.000 0.00 0.00 0.00 3.51
3571 3897 9.964303 CTATCTAGTAATATCTGGTGCATCATC 57.036 37.037 0.00 0.00 0.00 2.92
3572 3898 9.706529 TCTATCTAGTAATATCTGGTGCATCAT 57.293 33.333 0.00 0.00 0.00 2.45
3573 3899 9.706529 ATCTATCTAGTAATATCTGGTGCATCA 57.293 33.333 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.