Multiple sequence alignment - TraesCS1B01G478300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G478300 chr1B 100.000 2849 0 0 1 2849 686759515 686756667 0.000000e+00 5262.0
1 TraesCS1B01G478300 chr1A 90.067 1802 85 43 116 1867 591958201 591956444 0.000000e+00 2250.0
2 TraesCS1B01G478300 chr1A 89.038 894 27 21 1959 2847 591956327 591955500 0.000000e+00 1042.0
3 TraesCS1B01G478300 chr1D 88.470 1882 105 57 1016 2849 493713802 493711985 0.000000e+00 2170.0
4 TraesCS1B01G478300 chr1D 83.525 959 90 36 400 1316 493714461 493713529 0.000000e+00 833.0
5 TraesCS1B01G478300 chr1D 91.364 220 13 3 1 216 493714813 493714596 2.150000e-76 296.0
6 TraesCS1B01G478300 chr1D 91.304 138 12 0 298 435 493714596 493714459 3.750000e-44 189.0
7 TraesCS1B01G478300 chr7B 76.169 663 139 16 1 658 740020958 740021606 5.880000e-87 331.0
8 TraesCS1B01G478300 chr3B 76.018 663 140 16 1 658 41242887 41242239 2.740000e-85 326.0
9 TraesCS1B01G478300 chr2B 76.183 613 126 16 62 668 280487830 280488428 3.570000e-79 305.0
10 TraesCS1B01G478300 chr2B 74.667 675 148 20 1 668 50443212 50442554 7.770000e-71 278.0
11 TraesCS1B01G478300 chr7D 74.702 672 153 13 1 668 75819629 75820287 1.670000e-72 283.0
12 TraesCS1B01G478300 chr6D 95.122 41 2 0 204 244 193790581 193790541 6.590000e-07 65.8
13 TraesCS1B01G478300 chr6A 100.000 32 0 0 1856 1887 614847646 614847677 3.070000e-05 60.2
14 TraesCS1B01G478300 chr5D 100.000 32 0 0 1856 1887 431146199 431146168 3.070000e-05 60.2
15 TraesCS1B01G478300 chr5D 100.000 29 0 0 1186 1214 389597703 389597731 1.000000e-03 54.7
16 TraesCS1B01G478300 chr6B 100.000 31 0 0 1857 1887 598771690 598771660 1.100000e-04 58.4
17 TraesCS1B01G478300 chr6B 100.000 30 0 0 1857 1886 598771684 598771655 3.970000e-04 56.5
18 TraesCS1B01G478300 chrUn 100.000 30 0 0 1858 1887 387380051 387380022 3.970000e-04 56.5
19 TraesCS1B01G478300 chr2A 96.970 33 1 0 1855 1887 15854106 15854138 3.970000e-04 56.5
20 TraesCS1B01G478300 chr4D 96.875 32 1 0 1856 1887 311958113 311958082 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G478300 chr1B 686756667 686759515 2848 True 5262 5262 100.00000 1 2849 1 chr1B.!!$R1 2848
1 TraesCS1B01G478300 chr1A 591955500 591958201 2701 True 1646 2250 89.55250 116 2847 2 chr1A.!!$R1 2731
2 TraesCS1B01G478300 chr1D 493711985 493714813 2828 True 872 2170 88.66575 1 2849 4 chr1D.!!$R1 2848
3 TraesCS1B01G478300 chr7B 740020958 740021606 648 False 331 331 76.16900 1 658 1 chr7B.!!$F1 657
4 TraesCS1B01G478300 chr3B 41242239 41242887 648 True 326 326 76.01800 1 658 1 chr3B.!!$R1 657
5 TraesCS1B01G478300 chr2B 280487830 280488428 598 False 305 305 76.18300 62 668 1 chr2B.!!$F1 606
6 TraesCS1B01G478300 chr2B 50442554 50443212 658 True 278 278 74.66700 1 668 1 chr2B.!!$R1 667
7 TraesCS1B01G478300 chr7D 75819629 75820287 658 False 283 283 74.70200 1 668 1 chr7D.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 824 0.250553 TGTTTACCAGGAGCCGGTTG 60.251 55.0 1.9 0.0 37.99 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 2728 0.098025 AGTTGTTTGTTGACGGCGTG 59.902 50.0 21.19 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 8.103305 AGGCAATCAACAACTAGATTAAAGAGA 58.897 33.333 0.00 0.00 33.41 3.10
96 98 5.541868 TCCTTTGGCACTTTGAAAATATGGA 59.458 36.000 0.00 0.00 0.00 3.41
99 101 4.415596 TGGCACTTTGAAAATATGGACCT 58.584 39.130 0.00 0.00 0.00 3.85
141 143 2.484770 GCTAACCGTGCCATTATGGAGA 60.485 50.000 16.46 0.00 40.96 3.71
189 195 5.302313 AGGTATCACTAAATCCTCGGAGTTC 59.698 44.000 1.46 0.00 34.21 3.01
236 242 7.373493 CCAATTCACCTTATCATATGCTTTCC 58.627 38.462 0.00 0.00 0.00 3.13
250 256 3.575805 TGCTTTCCCAAAGTCCAATTCT 58.424 40.909 0.00 0.00 40.64 2.40
255 261 6.399639 TTTCCCAAAGTCCAATTCTAACAC 57.600 37.500 0.00 0.00 0.00 3.32
258 264 4.022329 CCCAAAGTCCAATTCTAACACCAC 60.022 45.833 0.00 0.00 0.00 4.16
340 346 9.713684 ACCATCCATGATATTTCTTCCTTTAAA 57.286 29.630 0.00 0.00 0.00 1.52
376 390 5.708697 GTGTAGGGCTAATTAACTTGTTGGT 59.291 40.000 0.00 0.00 0.00 3.67
394 408 5.953548 TGTTGGTATACTTAGCTACCTGACA 59.046 40.000 2.25 11.99 38.57 3.58
424 438 6.812998 ACGCCTTAGTTAACAGCTTATATGA 58.187 36.000 8.61 0.00 0.00 2.15
437 451 4.935205 AGCTTATATGAACAACGCAACAGA 59.065 37.500 0.00 0.00 0.00 3.41
448 499 1.164411 CGCAACAGACAAATAGGCCA 58.836 50.000 5.01 0.00 0.00 5.36
500 557 2.352561 TGGGAAGGAGGGTGATAACA 57.647 50.000 0.00 0.00 0.00 2.41
541 598 5.393068 ACATCCAGTGTCCCATTATGATT 57.607 39.130 0.00 0.00 35.77 2.57
542 599 6.514012 ACATCCAGTGTCCCATTATGATTA 57.486 37.500 0.00 0.00 35.77 1.75
543 600 7.095183 ACATCCAGTGTCCCATTATGATTAT 57.905 36.000 0.00 0.00 35.77 1.28
544 601 6.944290 ACATCCAGTGTCCCATTATGATTATG 59.056 38.462 0.00 0.00 35.77 1.90
545 602 6.762077 TCCAGTGTCCCATTATGATTATGA 57.238 37.500 0.00 0.00 0.00 2.15
671 728 1.269257 GCAAACAAAGCTTCCTTCGCT 60.269 47.619 0.00 0.00 39.94 4.93
763 824 0.250553 TGTTTACCAGGAGCCGGTTG 60.251 55.000 1.90 0.00 37.99 3.77
815 876 2.812011 AGCAAGTTCCGGTTTGTATGTC 59.188 45.455 0.00 0.00 0.00 3.06
816 877 2.550606 GCAAGTTCCGGTTTGTATGTCA 59.449 45.455 0.00 0.00 0.00 3.58
817 878 3.190535 GCAAGTTCCGGTTTGTATGTCAT 59.809 43.478 0.00 0.00 0.00 3.06
818 879 4.722194 CAAGTTCCGGTTTGTATGTCATG 58.278 43.478 0.00 0.00 0.00 3.07
973 1048 2.270923 CGTCGGCATTGAGATTTGAGA 58.729 47.619 0.00 0.00 0.00 3.27
974 1049 2.283617 CGTCGGCATTGAGATTTGAGAG 59.716 50.000 0.00 0.00 0.00 3.20
1023 1134 2.433994 GCTCCTCCTCCTCCTGCTG 61.434 68.421 0.00 0.00 0.00 4.41
1068 1179 3.626924 GCCGACACCACCTCCACT 61.627 66.667 0.00 0.00 0.00 4.00
1137 1281 2.805353 CCGACGAGCGACCAACAG 60.805 66.667 0.00 0.00 44.57 3.16
1167 1311 0.594796 CGTCGTCGCCATCATCATCA 60.595 55.000 0.00 0.00 0.00 3.07
1202 1367 2.284478 AGCAGGAGCAGGAGCAGA 60.284 61.111 0.00 0.00 45.49 4.26
1207 1372 1.449956 GGAGCAGGAGCAGAAGCAG 60.450 63.158 0.00 0.00 45.49 4.24
1208 1373 1.595882 GAGCAGGAGCAGAAGCAGA 59.404 57.895 0.00 0.00 45.49 4.26
1209 1374 0.036577 GAGCAGGAGCAGAAGCAGAA 60.037 55.000 0.00 0.00 45.49 3.02
1210 1375 0.036199 AGCAGGAGCAGAAGCAGAAG 60.036 55.000 0.00 0.00 45.49 2.85
1211 1376 1.646624 GCAGGAGCAGAAGCAGAAGC 61.647 60.000 0.00 0.00 45.49 3.86
1212 1377 0.321387 CAGGAGCAGAAGCAGAAGCA 60.321 55.000 0.00 0.00 45.49 3.91
1213 1378 0.036199 AGGAGCAGAAGCAGAAGCAG 60.036 55.000 0.00 0.00 45.49 4.24
1214 1379 1.646624 GGAGCAGAAGCAGAAGCAGC 61.647 60.000 0.00 0.00 45.49 5.25
1215 1380 0.954449 GAGCAGAAGCAGAAGCAGCA 60.954 55.000 0.00 0.00 45.49 4.41
1237 1402 2.501316 ACACCATCATCATCGTCTCCAA 59.499 45.455 0.00 0.00 0.00 3.53
1590 1773 0.598065 GCTTCTTCGTGGGCAACAAT 59.402 50.000 0.00 0.00 39.74 2.71
1828 2011 4.579384 CCAACACCACCACCGCCT 62.579 66.667 0.00 0.00 0.00 5.52
1829 2012 2.978010 CAACACCACCACCGCCTC 60.978 66.667 0.00 0.00 0.00 4.70
1852 2035 2.282180 CCAACCCCACCTGAACCG 60.282 66.667 0.00 0.00 0.00 4.44
2054 2296 7.889589 AAATCGATTTGAATTTCCTTTGGAC 57.110 32.000 22.16 0.00 0.00 4.02
2055 2297 5.041951 TCGATTTGAATTTCCTTTGGACG 57.958 39.130 0.00 0.00 0.00 4.79
2056 2298 4.757657 TCGATTTGAATTTCCTTTGGACGA 59.242 37.500 0.00 0.00 0.00 4.20
2057 2299 5.414454 TCGATTTGAATTTCCTTTGGACGAT 59.586 36.000 0.00 0.00 0.00 3.73
2058 2300 6.072175 TCGATTTGAATTTCCTTTGGACGATT 60.072 34.615 0.00 0.00 0.00 3.34
2059 2301 6.586082 CGATTTGAATTTCCTTTGGACGATTT 59.414 34.615 0.00 0.00 0.00 2.17
2060 2302 7.201350 CGATTTGAATTTCCTTTGGACGATTTC 60.201 37.037 0.00 0.00 0.00 2.17
2101 2343 5.355071 TGCTGTCAACTAAATGGATCATCAC 59.645 40.000 0.00 0.00 0.00 3.06
2119 2361 8.913487 ATCATCACAATATCAATGTAGCTTCA 57.087 30.769 0.00 0.00 0.00 3.02
2125 2367 9.577110 CACAATATCAATGTAGCTTCAAACATT 57.423 29.630 6.74 6.74 44.94 2.71
2158 2416 8.276325 CCTACTTCATTCATTCATTACTTACGC 58.724 37.037 0.00 0.00 0.00 4.42
2225 2483 2.096406 CATCGACGCAGCAAACCG 59.904 61.111 0.00 0.00 0.00 4.44
2226 2484 3.788766 ATCGACGCAGCAAACCGC 61.789 61.111 0.00 0.00 42.91 5.68
2679 2937 0.835941 CAGGGAGATTGACAGGGAGG 59.164 60.000 0.00 0.00 0.00 4.30
2680 2938 0.327000 AGGGAGATTGACAGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
2681 2939 0.326618 GGGAGATTGACAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
2682 2940 1.127343 GGAGATTGACAGGGAGGGAG 58.873 60.000 0.00 0.00 0.00 4.30
2683 2941 1.127343 GAGATTGACAGGGAGGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
2684 2942 0.327000 AGATTGACAGGGAGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
2685 2943 0.326618 GATTGACAGGGAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
2686 2944 0.327000 ATTGACAGGGAGGGAGGGAG 60.327 60.000 0.00 0.00 0.00 4.30
2719 2977 6.670077 AAAACTCAACAAGAAGAGTCAGTC 57.330 37.500 0.00 0.00 43.88 3.51
2720 2978 5.344743 AACTCAACAAGAAGAGTCAGTCA 57.655 39.130 0.00 0.00 43.88 3.41
2721 2979 4.942852 ACTCAACAAGAAGAGTCAGTCAG 58.057 43.478 0.00 0.00 40.96 3.51
2722 2980 4.404073 ACTCAACAAGAAGAGTCAGTCAGT 59.596 41.667 0.00 0.00 40.96 3.41
2813 3071 5.032170 AGGATTTCCATATGCCAAAACCTT 58.968 37.500 15.77 6.29 38.89 3.50
2814 3072 5.104817 AGGATTTCCATATGCCAAAACCTTG 60.105 40.000 15.77 0.00 38.89 3.61
2815 3073 5.338300 GGATTTCCATATGCCAAAACCTTGT 60.338 40.000 13.31 0.00 35.64 3.16
2816 3074 6.127196 GGATTTCCATATGCCAAAACCTTGTA 60.127 38.462 13.31 0.00 35.64 2.41
2840 3098 7.814264 ATGATGATTACAAAAAGGAGCCTAG 57.186 36.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.876581 GTGACCCACCATTCTCCTTTT 58.123 47.619 0.00 0.00 0.00 2.27
96 98 6.570378 GCATCAAGCTTAACAATTGTGTAGGT 60.570 38.462 12.82 14.41 37.33 3.08
141 143 3.698040 GTGTGGATGGATCAAGCAGATTT 59.302 43.478 0.00 0.00 37.00 2.17
189 195 4.274459 GGGATTTTCTCCTCGATTGTCATG 59.726 45.833 0.00 0.00 44.28 3.07
236 242 4.022329 GGTGGTGTTAGAATTGGACTTTGG 60.022 45.833 0.00 0.00 0.00 3.28
250 256 3.621682 AAAGAATTGGGGGTGGTGTTA 57.378 42.857 0.00 0.00 0.00 2.41
255 261 3.006859 GTGAAGAAAAGAATTGGGGGTGG 59.993 47.826 0.00 0.00 0.00 4.61
258 264 4.322953 CCATGTGAAGAAAAGAATTGGGGG 60.323 45.833 0.00 0.00 0.00 5.40
340 346 1.545651 GCCCTACACAGAGTGCCTTTT 60.546 52.381 0.00 0.00 36.98 2.27
348 362 6.407202 ACAAGTTAATTAGCCCTACACAGAG 58.593 40.000 0.00 0.00 0.00 3.35
353 367 5.883180 ACCAACAAGTTAATTAGCCCTACA 58.117 37.500 0.00 0.00 0.00 2.74
376 390 8.781196 CGTTAGATTGTCAGGTAGCTAAGTATA 58.219 37.037 0.00 0.00 0.00 1.47
394 408 5.731591 AGCTGTTAACTAAGGCGTTAGATT 58.268 37.500 28.02 20.07 38.39 2.40
424 438 3.550030 GCCTATTTGTCTGTTGCGTTGTT 60.550 43.478 0.00 0.00 0.00 2.83
437 451 3.700538 TCAGCAATTCTGGCCTATTTGT 58.299 40.909 3.32 0.00 43.06 2.83
500 557 1.204941 GTCCAGCGTCTCAACTATGGT 59.795 52.381 0.00 0.00 32.97 3.55
540 597 5.592282 TGTCCTTGTTCAAGCACTTTCATAA 59.408 36.000 7.90 0.00 0.00 1.90
541 598 5.129634 TGTCCTTGTTCAAGCACTTTCATA 58.870 37.500 7.90 0.00 0.00 2.15
542 599 3.953612 TGTCCTTGTTCAAGCACTTTCAT 59.046 39.130 7.90 0.00 0.00 2.57
543 600 3.351740 TGTCCTTGTTCAAGCACTTTCA 58.648 40.909 7.90 0.00 0.00 2.69
544 601 4.574599 ATGTCCTTGTTCAAGCACTTTC 57.425 40.909 7.90 0.00 0.00 2.62
545 602 6.655078 ATTATGTCCTTGTTCAAGCACTTT 57.345 33.333 7.90 0.00 0.00 2.66
671 728 4.585955 AGAGAGTTTAGTGAGACGCAAA 57.414 40.909 0.00 0.00 0.00 3.68
763 824 5.527582 GGACACCATATCACCATCAACTAAC 59.472 44.000 0.00 0.00 0.00 2.34
1001 1076 2.043852 GGAGGAGGAGGAGCGTCA 60.044 66.667 0.00 0.00 33.11 4.35
1023 1134 2.445654 CCCAGGAGGAGGAGGAGC 60.446 72.222 0.00 0.00 38.24 4.70
1095 1206 1.966451 GCTGCTGGTGGTGGTGTAC 60.966 63.158 0.00 0.00 0.00 2.90
1167 1311 3.248888 TGCTGGAGAGGATGATGATGAT 58.751 45.455 0.00 0.00 0.00 2.45
1202 1367 0.752743 TGGTGTTGCTGCTTCTGCTT 60.753 50.000 0.00 0.00 40.48 3.91
1207 1372 1.814394 TGATGATGGTGTTGCTGCTTC 59.186 47.619 0.00 0.00 0.00 3.86
1208 1373 1.913778 TGATGATGGTGTTGCTGCTT 58.086 45.000 0.00 0.00 0.00 3.91
1209 1374 2.022195 GATGATGATGGTGTTGCTGCT 58.978 47.619 0.00 0.00 0.00 4.24
1210 1375 1.268386 CGATGATGATGGTGTTGCTGC 60.268 52.381 0.00 0.00 0.00 5.25
1211 1376 2.011947 ACGATGATGATGGTGTTGCTG 58.988 47.619 0.00 0.00 0.00 4.41
1212 1377 2.093288 AGACGATGATGATGGTGTTGCT 60.093 45.455 0.00 0.00 0.00 3.91
1213 1378 2.283298 AGACGATGATGATGGTGTTGC 58.717 47.619 0.00 0.00 0.00 4.17
1214 1379 2.868583 GGAGACGATGATGATGGTGTTG 59.131 50.000 0.00 0.00 0.00 3.33
1215 1380 2.501316 TGGAGACGATGATGATGGTGTT 59.499 45.455 0.00 0.00 0.00 3.32
1237 1402 0.536006 GGTGTTGCTTCTGCTCCTGT 60.536 55.000 0.00 0.00 40.48 4.00
1560 1743 1.403972 CGAAGAAGCACTCGCCGTAC 61.404 60.000 0.00 0.00 39.83 3.67
1767 1950 1.556911 GAGATGAAGAACTGGCCCTGA 59.443 52.381 0.00 0.00 0.00 3.86
2040 2282 4.412207 CCGAAATCGTCCAAAGGAAATTC 58.588 43.478 1.79 0.00 37.74 2.17
2054 2296 4.331168 AGAGAAGAGAAATTGCCGAAATCG 59.669 41.667 0.00 0.00 39.44 3.34
2055 2297 5.567552 CAGAGAAGAGAAATTGCCGAAATC 58.432 41.667 0.00 0.00 0.00 2.17
2056 2298 4.142513 GCAGAGAAGAGAAATTGCCGAAAT 60.143 41.667 0.00 0.00 0.00 2.17
2057 2299 3.189287 GCAGAGAAGAGAAATTGCCGAAA 59.811 43.478 0.00 0.00 0.00 3.46
2058 2300 2.744202 GCAGAGAAGAGAAATTGCCGAA 59.256 45.455 0.00 0.00 0.00 4.30
2059 2301 2.027745 AGCAGAGAAGAGAAATTGCCGA 60.028 45.455 0.00 0.00 32.21 5.54
2060 2302 2.095532 CAGCAGAGAAGAGAAATTGCCG 59.904 50.000 0.00 0.00 32.21 5.69
2064 2306 5.619220 AGTTGACAGCAGAGAAGAGAAATT 58.381 37.500 0.00 0.00 0.00 1.82
2470 2728 0.098025 AGTTGTTTGTTGACGGCGTG 59.902 50.000 21.19 0.00 0.00 5.34
2679 2937 7.145474 TGAGTTTTATTTATACCCTCCCTCC 57.855 40.000 0.00 0.00 0.00 4.30
2680 2938 8.050930 TGTTGAGTTTTATTTATACCCTCCCTC 58.949 37.037 0.00 0.00 0.00 4.30
2681 2939 7.935405 TGTTGAGTTTTATTTATACCCTCCCT 58.065 34.615 0.00 0.00 0.00 4.20
2682 2940 8.584063 TTGTTGAGTTTTATTTATACCCTCCC 57.416 34.615 0.00 0.00 0.00 4.30
2683 2941 9.457436 TCTTGTTGAGTTTTATTTATACCCTCC 57.543 33.333 0.00 0.00 0.00 4.30
2719 2977 3.255149 ACGTACTAGTTCCTTGGACACTG 59.745 47.826 0.00 7.02 0.00 3.66
2720 2978 3.494332 ACGTACTAGTTCCTTGGACACT 58.506 45.455 0.00 8.65 0.00 3.55
2721 2979 3.930634 ACGTACTAGTTCCTTGGACAC 57.069 47.619 0.00 0.00 0.00 3.67
2722 2980 7.886629 ATTATACGTACTAGTTCCTTGGACA 57.113 36.000 0.00 0.00 0.00 4.02
2757 3015 9.362539 CTTGCTGTCTTTCTTGCATAAATAAAT 57.637 29.630 0.00 0.00 35.27 1.40
2758 3016 8.359642 ACTTGCTGTCTTTCTTGCATAAATAAA 58.640 29.630 0.00 0.00 35.27 1.40
2759 3017 7.885297 ACTTGCTGTCTTTCTTGCATAAATAA 58.115 30.769 0.00 0.00 35.27 1.40
2760 3018 7.452880 ACTTGCTGTCTTTCTTGCATAAATA 57.547 32.000 0.00 0.00 35.27 1.40
2761 3019 6.336842 ACTTGCTGTCTTTCTTGCATAAAT 57.663 33.333 0.00 0.00 35.27 1.40
2762 3020 5.762045 GACTTGCTGTCTTTCTTGCATAAA 58.238 37.500 0.00 0.00 42.21 1.40
2763 3021 5.362556 GACTTGCTGTCTTTCTTGCATAA 57.637 39.130 0.00 0.00 42.21 1.90
2813 3071 7.118723 AGGCTCCTTTTTGTAATCATCATACA 58.881 34.615 0.00 0.00 0.00 2.29
2814 3072 7.573968 AGGCTCCTTTTTGTAATCATCATAC 57.426 36.000 0.00 0.00 0.00 2.39
2815 3073 7.445402 GCTAGGCTCCTTTTTGTAATCATCATA 59.555 37.037 0.00 0.00 0.00 2.15
2816 3074 6.264067 GCTAGGCTCCTTTTTGTAATCATCAT 59.736 38.462 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.