Multiple sequence alignment - TraesCS1B01G477500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G477500 chr1B 100.000 6431 0 0 1 6431 685718579 685725009 0.000000e+00 11876.0
1 TraesCS1B01G477500 chr1B 93.494 707 36 4 3581 4277 685916507 685915801 0.000000e+00 1042.0
2 TraesCS1B01G477500 chr1B 89.905 525 37 4 2755 3263 686128795 686128271 0.000000e+00 662.0
3 TraesCS1B01G477500 chr1B 88.952 525 42 4 2755 3263 685971588 685971064 9.100000e-178 634.0
4 TraesCS1B01G477500 chr1B 87.158 475 41 5 2809 3263 686387800 686387326 7.390000e-144 521.0
5 TraesCS1B01G477500 chr1B 94.375 160 4 3 3260 3419 685941357 685941203 2.320000e-59 241.0
6 TraesCS1B01G477500 chr1B 93.750 160 5 3 3260 3419 686277642 686277488 1.080000e-57 235.0
7 TraesCS1B01G477500 chr1A 96.296 4805 43 36 1742 6431 591926629 591931413 0.000000e+00 7762.0
8 TraesCS1B01G477500 chr1A 89.451 474 38 5 1 465 591925092 591925562 7.180000e-164 588.0
9 TraesCS1B01G477500 chr1A 93.151 365 3 8 1344 1699 591926265 591926616 3.440000e-142 516.0
10 TraesCS1B01G477500 chr1D 96.735 1409 25 9 2022 3419 493604563 493605961 0.000000e+00 2327.0
11 TraesCS1B01G477500 chr1D 95.160 971 34 7 3413 4372 493605996 493606964 0.000000e+00 1520.0
12 TraesCS1B01G477500 chr1D 92.269 996 26 21 4466 5438 493607181 493608148 0.000000e+00 1365.0
13 TraesCS1B01G477500 chr1D 85.714 427 24 10 1129 1542 493603075 493603477 3.590000e-112 416.0
14 TraesCS1B01G477500 chr1D 89.266 354 9 8 5963 6306 493608885 493609219 3.590000e-112 416.0
15 TraesCS1B01G477500 chr1D 89.809 157 4 7 1849 2000 493604256 493604405 2.370000e-44 191.0
16 TraesCS1B01G477500 chr1D 83.721 215 7 14 5778 5967 493608643 493608854 1.840000e-40 178.0
17 TraesCS1B01G477500 chr1D 93.878 98 5 1 4370 4467 493607003 493607099 5.200000e-31 147.0
18 TraesCS1B01G477500 chr1D 81.595 163 15 10 1683 1841 493604064 493604215 3.150000e-23 121.0
19 TraesCS1B01G477500 chr1D 98.039 51 1 0 5467 5517 493608142 493608192 8.880000e-14 89.8
20 TraesCS1B01G477500 chr1D 92.727 55 0 1 5718 5772 493608556 493608606 6.910000e-10 76.8
21 TraesCS1B01G477500 chr1D 100.000 33 0 0 5528 5560 493608228 493608260 1.940000e-05 62.1
22 TraesCS1B01G477500 chr1D 100.000 30 0 0 1005 1034 493602971 493603000 1.000000e-03 56.5
23 TraesCS1B01G477500 chr5A 81.319 637 55 34 4807 5412 590093844 590093241 5.880000e-125 459.0
24 TraesCS1B01G477500 chr5A 80.915 634 50 33 4807 5411 590081200 590081791 9.900000e-118 435.0
25 TraesCS1B01G477500 chr5A 79.399 233 22 16 2068 2291 346140134 346139919 2.420000e-29 141.0
26 TraesCS1B01G477500 chr3B 80.503 636 49 39 4807 5411 171221275 171220684 9.970000e-113 418.0
27 TraesCS1B01G477500 chr3B 78.627 641 109 15 2523 3150 302363715 302363090 3.610000e-107 399.0
28 TraesCS1B01G477500 chr3B 92.763 152 11 0 4558 4709 302356897 302356746 3.020000e-53 220.0
29 TraesCS1B01G477500 chr3B 88.806 134 15 0 3217 3350 302362971 302362838 1.430000e-36 165.0
30 TraesCS1B01G477500 chr3B 80.513 195 18 9 2066 2253 661342951 661342770 1.450000e-26 132.0
31 TraesCS1B01G477500 chr3D 78.783 641 107 17 2523 3150 254747325 254746701 2.790000e-108 403.0
32 TraesCS1B01G477500 chr3D 83.448 435 38 16 4807 5219 124502322 124502744 2.190000e-99 374.0
33 TraesCS1B01G477500 chr3D 92.105 152 12 0 4558 4709 254741189 254741038 1.400000e-51 215.0
34 TraesCS1B01G477500 chr3D 88.806 134 15 0 3217 3350 254746582 254746449 1.430000e-36 165.0
35 TraesCS1B01G477500 chr3D 81.026 195 17 9 2066 2253 500002434 500002253 3.130000e-28 137.0
36 TraesCS1B01G477500 chr3D 86.441 59 2 2 2252 2304 546696811 546696869 6.960000e-05 60.2
37 TraesCS1B01G477500 chr3A 78.438 640 109 16 2523 3150 330057383 330056761 2.170000e-104 390.0
38 TraesCS1B01G477500 chr3A 89.552 134 14 0 3217 3350 330056642 330056509 3.080000e-38 171.0
39 TraesCS1B01G477500 chr3A 81.675 191 15 9 2066 2249 639501796 639501619 2.420000e-29 141.0
40 TraesCS1B01G477500 chr3A 94.595 37 2 0 2252 2288 683435087 683435123 2.500000e-04 58.4
41 TraesCS1B01G477500 chr6D 81.868 364 18 10 466 788 269120886 269121242 4.940000e-66 263.0
42 TraesCS1B01G477500 chr2D 80.435 184 32 2 218 401 590096164 590095985 3.130000e-28 137.0
43 TraesCS1B01G477500 chrUn 85.484 124 9 5 466 587 313257773 313257657 3.150000e-23 121.0
44 TraesCS1B01G477500 chrUn 88.889 81 9 0 1473 1553 334209651 334209571 4.100000e-17 100.0
45 TraesCS1B01G477500 chrUn 94.737 57 3 0 1347 1403 334209848 334209792 8.880000e-14 89.8
46 TraesCS1B01G477500 chr7A 88.889 81 9 0 1473 1553 686645363 686645283 4.100000e-17 100.0
47 TraesCS1B01G477500 chr7A 88.889 81 9 0 1473 1553 686711404 686711324 4.100000e-17 100.0
48 TraesCS1B01G477500 chr7A 88.889 81 9 0 1473 1553 686735280 686735200 4.100000e-17 100.0
49 TraesCS1B01G477500 chr7A 86.420 81 11 0 1473 1553 686587685 686587605 8.880000e-14 89.8
50 TraesCS1B01G477500 chr7A 94.737 57 3 0 1347 1403 686645560 686645504 8.880000e-14 89.8
51 TraesCS1B01G477500 chr7A 94.737 57 3 0 1347 1403 686711601 686711545 8.880000e-14 89.8
52 TraesCS1B01G477500 chr7A 94.737 57 3 0 1347 1403 686735477 686735421 8.880000e-14 89.8
53 TraesCS1B01G477500 chr6A 78.862 123 18 4 2066 2188 430502031 430502145 6.910000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G477500 chr1B 685718579 685725009 6430 False 11876.000000 11876 100.000000 1 6431 1 chr1B.!!$F1 6430
1 TraesCS1B01G477500 chr1B 685915801 685916507 706 True 1042.000000 1042 93.494000 3581 4277 1 chr1B.!!$R1 696
2 TraesCS1B01G477500 chr1B 686128271 686128795 524 True 662.000000 662 89.905000 2755 3263 1 chr1B.!!$R4 508
3 TraesCS1B01G477500 chr1B 685971064 685971588 524 True 634.000000 634 88.952000 2755 3263 1 chr1B.!!$R3 508
4 TraesCS1B01G477500 chr1A 591925092 591931413 6321 False 2955.333333 7762 92.966000 1 6431 3 chr1A.!!$F1 6430
5 TraesCS1B01G477500 chr1D 493602971 493609219 6248 False 535.861538 2327 92.224077 1005 6306 13 chr1D.!!$F1 5301
6 TraesCS1B01G477500 chr5A 590093241 590093844 603 True 459.000000 459 81.319000 4807 5412 1 chr5A.!!$R2 605
7 TraesCS1B01G477500 chr5A 590081200 590081791 591 False 435.000000 435 80.915000 4807 5411 1 chr5A.!!$F1 604
8 TraesCS1B01G477500 chr3B 171220684 171221275 591 True 418.000000 418 80.503000 4807 5411 1 chr3B.!!$R1 604
9 TraesCS1B01G477500 chr3B 302362838 302363715 877 True 282.000000 399 83.716500 2523 3350 2 chr3B.!!$R4 827
10 TraesCS1B01G477500 chr3D 254746449 254747325 876 True 284.000000 403 83.794500 2523 3350 2 chr3D.!!$R3 827
11 TraesCS1B01G477500 chr3A 330056509 330057383 874 True 280.500000 390 83.995000 2523 3350 2 chr3A.!!$R2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 656 0.028770 CTGCAGTTTGAAAACGCGGA 59.971 50.0 12.47 8.29 42.15 5.54 F
656 666 0.028902 AAAACGCGGACACAAGAAGC 59.971 50.0 12.47 0.00 0.00 3.86 F
721 731 0.036388 CACCGCTGTGGGTAGTTGAT 60.036 55.0 12.58 0.00 44.64 2.57 F
1233 1441 0.101399 CTCGGTCGAGATCTGGTTGG 59.899 60.0 14.45 0.00 44.53 3.77 F
1906 2603 0.690762 AACTGCAACATACCGACCCT 59.309 50.0 0.00 0.00 0.00 4.34 F
1907 2604 1.563924 ACTGCAACATACCGACCCTA 58.436 50.0 0.00 0.00 0.00 3.53 F
3484 4458 2.224549 AGAGTTCTCTCGTCAAGTCGTG 59.775 50.0 0.00 0.00 44.65 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 2289 1.425428 GTCGATTTTCGCAGCAGGG 59.575 57.895 0.0 0.0 40.21 4.45 R
1849 2514 1.576356 TTGGTTGGCATGTTTTTCGC 58.424 45.000 0.0 0.0 0.00 4.70 R
2187 3027 3.186001 CACAGCAAGCAAAACAACAAACA 59.814 39.130 0.0 0.0 0.00 2.83 R
3484 4458 9.459640 GGTAGTAATGGAAAACAGAAGAAAAAC 57.540 33.333 0.0 0.0 0.00 2.43 R
4099 5088 4.665833 TTTTCGGTTCTTCTCTGACTCA 57.334 40.909 0.0 0.0 0.00 3.41 R
4839 5956 3.304123 CCGACGAAACAAAAGTTATGGCA 60.304 43.478 0.0 0.0 0.00 4.92 R
5519 6710 0.313043 GCAGCAGCAGAAGCAGAAAA 59.687 50.000 0.0 0.0 45.49 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.388659 TCTGTTTTGCATGGTGTGGC 59.611 50.000 0.00 0.00 0.00 5.01
97 98 3.735591 TCCCCTTCACTAAAGTTGTTCG 58.264 45.455 0.00 0.00 32.69 3.95
110 111 1.329599 GTTGTTCGTGTTGAGGTGGAC 59.670 52.381 0.00 0.00 0.00 4.02
139 140 1.571919 GGTGGTATGATCGTCACTGC 58.428 55.000 6.69 0.00 0.00 4.40
146 147 1.587613 GATCGTCACTGCTCCGAGC 60.588 63.158 13.81 13.81 42.82 5.03
156 157 2.697761 GCTCCGAGCAGACGTGGTA 61.698 63.158 15.78 0.00 41.89 3.25
158 159 0.456221 CTCCGAGCAGACGTGGTATT 59.544 55.000 0.00 0.00 33.41 1.89
166 167 3.699538 AGCAGACGTGGTATTGTGATCTA 59.300 43.478 0.00 0.00 30.68 1.98
193 195 3.387374 TCTGGTGCATTTTTGTCCAACAT 59.613 39.130 0.00 0.00 0.00 2.71
262 264 7.279750 TGGTTTCCTTGTTCCAAAAGTATAC 57.720 36.000 0.00 0.00 0.00 1.47
276 278 7.865385 TCCAAAAGTATACTTGTTTTGCACATC 59.135 33.333 18.70 0.00 39.03 3.06
282 284 4.734398 ACTTGTTTTGCACATCAAAGGA 57.266 36.364 0.00 0.00 44.62 3.36
289 291 6.205464 TGTTTTGCACATCAAAGGAAAAACAA 59.795 30.769 7.28 0.00 44.62 2.83
318 320 7.797038 TCTTCTTTCTTAAAAGGTTAGCGTT 57.203 32.000 0.00 0.00 41.88 4.84
320 322 8.985805 TCTTCTTTCTTAAAAGGTTAGCGTTAG 58.014 33.333 0.00 0.00 41.88 2.34
326 328 8.530269 TCTTAAAAGGTTAGCGTTAGAAAGAG 57.470 34.615 0.00 0.00 0.00 2.85
330 332 1.925185 GTTAGCGTTAGAAAGAGGCGG 59.075 52.381 0.00 0.00 33.44 6.13
333 335 0.806492 GCGTTAGAAAGAGGCGGGAG 60.806 60.000 0.00 0.00 0.00 4.30
346 348 3.344515 AGGCGGGAGATAACAAAAACTC 58.655 45.455 0.00 0.00 0.00 3.01
348 350 2.997986 GCGGGAGATAACAAAAACTCGA 59.002 45.455 0.00 0.00 0.00 4.04
350 352 4.494199 GCGGGAGATAACAAAAACTCGATG 60.494 45.833 0.00 0.00 0.00 3.84
366 372 2.487762 TCGATGGAAGCCACATCAAAAC 59.512 45.455 11.79 0.00 43.75 2.43
372 378 3.572255 GGAAGCCACATCAAAACCTTGTA 59.428 43.478 0.00 0.00 33.94 2.41
374 380 5.279456 GGAAGCCACATCAAAACCTTGTAAT 60.279 40.000 0.00 0.00 33.94 1.89
377 383 7.296628 AGCCACATCAAAACCTTGTAATAAA 57.703 32.000 0.00 0.00 33.94 1.40
385 391 9.908152 ATCAAAACCTTGTAATAAAAGTAGCAC 57.092 29.630 0.00 0.00 33.94 4.40
395 401 9.256477 TGTAATAAAAGTAGCACAATATCGAGG 57.744 33.333 0.00 0.00 0.00 4.63
399 405 3.919216 AGTAGCACAATATCGAGGCATC 58.081 45.455 0.00 0.00 0.00 3.91
410 416 1.691219 GAGGCATCAACTCCCCCAA 59.309 57.895 0.00 0.00 0.00 4.12
414 420 0.255890 GCATCAACTCCCCCAAGCTA 59.744 55.000 0.00 0.00 0.00 3.32
444 454 3.494749 GCTCATCCTCAAGCAGCTAAGAT 60.495 47.826 0.00 0.00 38.42 2.40
480 490 3.900966 GGGAGTAAACCCGTGAATAGT 57.099 47.619 0.00 0.00 40.49 2.12
481 491 4.212143 GGGAGTAAACCCGTGAATAGTT 57.788 45.455 0.00 0.00 40.49 2.24
482 492 4.582869 GGGAGTAAACCCGTGAATAGTTT 58.417 43.478 0.00 0.00 40.49 2.66
483 493 4.633126 GGGAGTAAACCCGTGAATAGTTTC 59.367 45.833 0.00 0.00 40.49 2.78
484 494 5.240121 GGAGTAAACCCGTGAATAGTTTCA 58.760 41.667 0.00 0.00 39.54 2.69
485 495 5.702209 GGAGTAAACCCGTGAATAGTTTCAA 59.298 40.000 0.00 0.00 43.29 2.69
486 496 6.205270 GGAGTAAACCCGTGAATAGTTTCAAA 59.795 38.462 0.00 0.00 43.29 2.69
487 497 7.255208 GGAGTAAACCCGTGAATAGTTTCAAAA 60.255 37.037 0.00 0.00 43.29 2.44
488 498 7.420002 AGTAAACCCGTGAATAGTTTCAAAAC 58.580 34.615 0.00 0.00 43.29 2.43
489 499 4.841443 ACCCGTGAATAGTTTCAAAACC 57.159 40.909 2.08 0.00 43.29 3.27
490 500 4.208746 ACCCGTGAATAGTTTCAAAACCA 58.791 39.130 2.08 0.00 43.29 3.67
491 501 4.277423 ACCCGTGAATAGTTTCAAAACCAG 59.723 41.667 2.08 0.00 43.29 4.00
492 502 4.517453 CCCGTGAATAGTTTCAAAACCAGA 59.483 41.667 2.08 0.00 43.29 3.86
493 503 5.183140 CCCGTGAATAGTTTCAAAACCAGAT 59.817 40.000 2.08 0.00 43.29 2.90
494 504 6.294508 CCCGTGAATAGTTTCAAAACCAGATT 60.295 38.462 2.08 1.05 43.29 2.40
495 505 6.582295 CCGTGAATAGTTTCAAAACCAGATTG 59.418 38.462 2.08 0.00 43.29 2.67
496 506 7.359595 CGTGAATAGTTTCAAAACCAGATTGA 58.640 34.615 2.08 0.00 43.29 2.57
497 507 7.860373 CGTGAATAGTTTCAAAACCAGATTGAA 59.140 33.333 2.08 0.00 43.29 2.69
498 508 9.696917 GTGAATAGTTTCAAAACCAGATTGAAT 57.303 29.630 2.08 0.00 43.94 2.57
499 509 9.912634 TGAATAGTTTCAAAACCAGATTGAATC 57.087 29.630 0.00 0.00 43.94 2.52
500 510 9.358872 GAATAGTTTCAAAACCAGATTGAATCC 57.641 33.333 0.75 0.00 43.94 3.01
501 511 6.729690 AGTTTCAAAACCAGATTGAATCCA 57.270 33.333 0.75 0.00 43.94 3.41
502 512 6.752168 AGTTTCAAAACCAGATTGAATCCAG 58.248 36.000 0.75 0.00 43.94 3.86
503 513 4.789012 TCAAAACCAGATTGAATCCAGC 57.211 40.909 0.75 0.00 34.04 4.85
504 514 3.511146 TCAAAACCAGATTGAATCCAGCC 59.489 43.478 0.75 0.00 34.04 4.85
505 515 2.149973 AACCAGATTGAATCCAGCCC 57.850 50.000 0.75 0.00 0.00 5.19
506 516 1.002069 ACCAGATTGAATCCAGCCCA 58.998 50.000 0.75 0.00 0.00 5.36
507 517 1.358787 ACCAGATTGAATCCAGCCCAA 59.641 47.619 0.75 0.00 0.00 4.12
508 518 2.225343 ACCAGATTGAATCCAGCCCAAA 60.225 45.455 0.75 0.00 0.00 3.28
509 519 2.167075 CCAGATTGAATCCAGCCCAAAC 59.833 50.000 0.75 0.00 0.00 2.93
510 520 2.167075 CAGATTGAATCCAGCCCAAACC 59.833 50.000 0.75 0.00 0.00 3.27
511 521 2.178580 GATTGAATCCAGCCCAAACCA 58.821 47.619 0.00 0.00 0.00 3.67
512 522 2.323999 TTGAATCCAGCCCAAACCAT 57.676 45.000 0.00 0.00 0.00 3.55
513 523 3.464720 TTGAATCCAGCCCAAACCATA 57.535 42.857 0.00 0.00 0.00 2.74
514 524 2.733956 TGAATCCAGCCCAAACCATAC 58.266 47.619 0.00 0.00 0.00 2.39
515 525 1.676006 GAATCCAGCCCAAACCATACG 59.324 52.381 0.00 0.00 0.00 3.06
516 526 0.623723 ATCCAGCCCAAACCATACGT 59.376 50.000 0.00 0.00 0.00 3.57
517 527 1.277579 TCCAGCCCAAACCATACGTA 58.722 50.000 0.00 0.00 0.00 3.57
518 528 1.065998 TCCAGCCCAAACCATACGTAC 60.066 52.381 0.00 0.00 0.00 3.67
519 529 1.003851 CAGCCCAAACCATACGTACG 58.996 55.000 15.01 15.01 0.00 3.67
520 530 0.896923 AGCCCAAACCATACGTACGA 59.103 50.000 24.41 6.04 0.00 3.43
521 531 1.134907 AGCCCAAACCATACGTACGAG 60.135 52.381 24.41 11.01 0.00 4.18
522 532 1.135024 GCCCAAACCATACGTACGAGA 60.135 52.381 24.41 9.81 0.00 4.04
523 533 2.482490 GCCCAAACCATACGTACGAGAT 60.482 50.000 24.41 11.85 0.00 2.75
524 534 3.788937 CCCAAACCATACGTACGAGATT 58.211 45.455 24.41 1.05 0.00 2.40
525 535 3.800506 CCCAAACCATACGTACGAGATTC 59.199 47.826 24.41 0.00 0.00 2.52
526 536 4.441079 CCCAAACCATACGTACGAGATTCT 60.441 45.833 24.41 0.00 0.00 2.40
527 537 4.503007 CCAAACCATACGTACGAGATTCTG 59.497 45.833 24.41 10.12 0.00 3.02
528 538 3.351020 ACCATACGTACGAGATTCTGC 57.649 47.619 24.41 0.00 0.00 4.26
529 539 2.034305 ACCATACGTACGAGATTCTGCC 59.966 50.000 24.41 0.00 0.00 4.85
530 540 2.293677 CCATACGTACGAGATTCTGCCT 59.706 50.000 24.41 0.00 0.00 4.75
531 541 3.556513 CATACGTACGAGATTCTGCCTC 58.443 50.000 24.41 0.00 0.00 4.70
532 542 1.752683 ACGTACGAGATTCTGCCTCT 58.247 50.000 24.41 0.00 0.00 3.69
533 543 2.093106 ACGTACGAGATTCTGCCTCTT 58.907 47.619 24.41 0.00 0.00 2.85
534 544 2.492484 ACGTACGAGATTCTGCCTCTTT 59.508 45.455 24.41 0.00 0.00 2.52
535 545 3.109619 CGTACGAGATTCTGCCTCTTTC 58.890 50.000 10.44 0.00 0.00 2.62
536 546 3.427638 CGTACGAGATTCTGCCTCTTTCA 60.428 47.826 10.44 0.00 0.00 2.69
537 547 3.902881 ACGAGATTCTGCCTCTTTCAT 57.097 42.857 0.00 0.00 0.00 2.57
538 548 3.791245 ACGAGATTCTGCCTCTTTCATC 58.209 45.455 0.00 0.00 0.00 2.92
539 549 3.129871 CGAGATTCTGCCTCTTTCATCC 58.870 50.000 0.00 0.00 0.00 3.51
540 550 3.129871 GAGATTCTGCCTCTTTCATCCG 58.870 50.000 0.00 0.00 0.00 4.18
541 551 2.768527 AGATTCTGCCTCTTTCATCCGA 59.231 45.455 0.00 0.00 0.00 4.55
542 552 3.198635 AGATTCTGCCTCTTTCATCCGAA 59.801 43.478 0.00 0.00 0.00 4.30
543 553 2.386661 TCTGCCTCTTTCATCCGAAC 57.613 50.000 0.00 0.00 0.00 3.95
544 554 1.066143 TCTGCCTCTTTCATCCGAACC 60.066 52.381 0.00 0.00 0.00 3.62
545 555 0.690192 TGCCTCTTTCATCCGAACCA 59.310 50.000 0.00 0.00 0.00 3.67
546 556 1.073125 TGCCTCTTTCATCCGAACCAA 59.927 47.619 0.00 0.00 0.00 3.67
547 557 2.290896 TGCCTCTTTCATCCGAACCAAT 60.291 45.455 0.00 0.00 0.00 3.16
548 558 2.356069 GCCTCTTTCATCCGAACCAATC 59.644 50.000 0.00 0.00 0.00 2.67
549 559 2.945668 CCTCTTTCATCCGAACCAATCC 59.054 50.000 0.00 0.00 0.00 3.01
550 560 3.609853 CTCTTTCATCCGAACCAATCCA 58.390 45.455 0.00 0.00 0.00 3.41
551 561 4.009675 CTCTTTCATCCGAACCAATCCAA 58.990 43.478 0.00 0.00 0.00 3.53
552 562 4.599041 TCTTTCATCCGAACCAATCCAAT 58.401 39.130 0.00 0.00 0.00 3.16
553 563 4.640201 TCTTTCATCCGAACCAATCCAATC 59.360 41.667 0.00 0.00 0.00 2.67
554 564 2.930950 TCATCCGAACCAATCCAATCC 58.069 47.619 0.00 0.00 0.00 3.01
555 565 2.240921 TCATCCGAACCAATCCAATCCA 59.759 45.455 0.00 0.00 0.00 3.41
556 566 2.889170 TCCGAACCAATCCAATCCAA 57.111 45.000 0.00 0.00 0.00 3.53
557 567 3.162147 TCCGAACCAATCCAATCCAAA 57.838 42.857 0.00 0.00 0.00 3.28
558 568 2.823154 TCCGAACCAATCCAATCCAAAC 59.177 45.455 0.00 0.00 0.00 2.93
559 569 2.825532 CCGAACCAATCCAATCCAAACT 59.174 45.455 0.00 0.00 0.00 2.66
560 570 3.258123 CCGAACCAATCCAATCCAAACTT 59.742 43.478 0.00 0.00 0.00 2.66
561 571 4.262420 CCGAACCAATCCAATCCAAACTTT 60.262 41.667 0.00 0.00 0.00 2.66
562 572 5.047660 CCGAACCAATCCAATCCAAACTTTA 60.048 40.000 0.00 0.00 0.00 1.85
563 573 6.451393 CGAACCAATCCAATCCAAACTTTAA 58.549 36.000 0.00 0.00 0.00 1.52
564 574 6.364976 CGAACCAATCCAATCCAAACTTTAAC 59.635 38.462 0.00 0.00 0.00 2.01
565 575 6.109156 ACCAATCCAATCCAAACTTTAACC 57.891 37.500 0.00 0.00 0.00 2.85
566 576 5.604650 ACCAATCCAATCCAAACTTTAACCA 59.395 36.000 0.00 0.00 0.00 3.67
567 577 5.931724 CCAATCCAATCCAAACTTTAACCAC 59.068 40.000 0.00 0.00 0.00 4.16
568 578 5.738619 ATCCAATCCAAACTTTAACCACC 57.261 39.130 0.00 0.00 0.00 4.61
569 579 4.547671 TCCAATCCAAACTTTAACCACCA 58.452 39.130 0.00 0.00 0.00 4.17
570 580 5.151454 TCCAATCCAAACTTTAACCACCAT 58.849 37.500 0.00 0.00 0.00 3.55
571 581 6.315714 TCCAATCCAAACTTTAACCACCATA 58.684 36.000 0.00 0.00 0.00 2.74
572 582 6.782988 TCCAATCCAAACTTTAACCACCATAA 59.217 34.615 0.00 0.00 0.00 1.90
573 583 7.456269 TCCAATCCAAACTTTAACCACCATAAT 59.544 33.333 0.00 0.00 0.00 1.28
574 584 7.763985 CCAATCCAAACTTTAACCACCATAATC 59.236 37.037 0.00 0.00 0.00 1.75
575 585 6.503589 TCCAAACTTTAACCACCATAATCG 57.496 37.500 0.00 0.00 0.00 3.34
576 586 6.239396 TCCAAACTTTAACCACCATAATCGA 58.761 36.000 0.00 0.00 0.00 3.59
577 587 6.373216 TCCAAACTTTAACCACCATAATCGAG 59.627 38.462 0.00 0.00 0.00 4.04
578 588 6.373216 CCAAACTTTAACCACCATAATCGAGA 59.627 38.462 0.00 0.00 0.00 4.04
579 589 6.980051 AACTTTAACCACCATAATCGAGAC 57.020 37.500 0.00 0.00 0.00 3.36
580 590 5.425630 ACTTTAACCACCATAATCGAGACC 58.574 41.667 0.00 0.00 0.00 3.85
581 591 5.046159 ACTTTAACCACCATAATCGAGACCA 60.046 40.000 0.00 0.00 0.00 4.02
582 592 3.992943 AACCACCATAATCGAGACCAA 57.007 42.857 0.00 0.00 0.00 3.67
583 593 3.992943 ACCACCATAATCGAGACCAAA 57.007 42.857 0.00 0.00 0.00 3.28
584 594 3.606687 ACCACCATAATCGAGACCAAAC 58.393 45.455 0.00 0.00 0.00 2.93
585 595 2.943033 CCACCATAATCGAGACCAAACC 59.057 50.000 0.00 0.00 0.00 3.27
586 596 3.605634 CACCATAATCGAGACCAAACCA 58.394 45.455 0.00 0.00 0.00 3.67
587 597 3.374058 CACCATAATCGAGACCAAACCAC 59.626 47.826 0.00 0.00 0.00 4.16
588 598 2.943033 CCATAATCGAGACCAAACCACC 59.057 50.000 0.00 0.00 0.00 4.61
589 599 2.773993 TAATCGAGACCAAACCACCC 57.226 50.000 0.00 0.00 0.00 4.61
590 600 0.768622 AATCGAGACCAAACCACCCA 59.231 50.000 0.00 0.00 0.00 4.51
591 601 0.324943 ATCGAGACCAAACCACCCAG 59.675 55.000 0.00 0.00 0.00 4.45
592 602 1.966451 CGAGACCAAACCACCCAGC 60.966 63.158 0.00 0.00 0.00 4.85
593 603 1.603739 GAGACCAAACCACCCAGCC 60.604 63.158 0.00 0.00 0.00 4.85
594 604 2.600470 GACCAAACCACCCAGCCC 60.600 66.667 0.00 0.00 0.00 5.19
595 605 4.233558 ACCAAACCACCCAGCCCC 62.234 66.667 0.00 0.00 0.00 5.80
596 606 4.232061 CCAAACCACCCAGCCCCA 62.232 66.667 0.00 0.00 0.00 4.96
597 607 2.120274 CAAACCACCCAGCCCCAT 59.880 61.111 0.00 0.00 0.00 4.00
598 608 1.984026 CAAACCACCCAGCCCCATC 60.984 63.158 0.00 0.00 0.00 3.51
599 609 3.238197 AAACCACCCAGCCCCATCC 62.238 63.158 0.00 0.00 0.00 3.51
601 611 3.671410 CCACCCAGCCCCATCCAA 61.671 66.667 0.00 0.00 0.00 3.53
602 612 2.362889 CACCCAGCCCCATCCAAC 60.363 66.667 0.00 0.00 0.00 3.77
603 613 3.672503 ACCCAGCCCCATCCAACC 61.673 66.667 0.00 0.00 0.00 3.77
604 614 4.463788 CCCAGCCCCATCCAACCC 62.464 72.222 0.00 0.00 0.00 4.11
605 615 3.671410 CCAGCCCCATCCAACCCA 61.671 66.667 0.00 0.00 0.00 4.51
606 616 2.691732 CAGCCCCATCCAACCCAT 59.308 61.111 0.00 0.00 0.00 4.00
607 617 1.002017 CAGCCCCATCCAACCCATT 59.998 57.895 0.00 0.00 0.00 3.16
608 618 0.618393 CAGCCCCATCCAACCCATTT 60.618 55.000 0.00 0.00 0.00 2.32
609 619 0.118952 AGCCCCATCCAACCCATTTT 59.881 50.000 0.00 0.00 0.00 1.82
610 620 0.991146 GCCCCATCCAACCCATTTTT 59.009 50.000 0.00 0.00 0.00 1.94
611 621 1.065491 GCCCCATCCAACCCATTTTTC 60.065 52.381 0.00 0.00 0.00 2.29
612 622 2.264455 CCCCATCCAACCCATTTTTCA 58.736 47.619 0.00 0.00 0.00 2.69
613 623 2.845586 CCCCATCCAACCCATTTTTCAT 59.154 45.455 0.00 0.00 0.00 2.57
614 624 3.266513 CCCCATCCAACCCATTTTTCATT 59.733 43.478 0.00 0.00 0.00 2.57
615 625 4.263860 CCCCATCCAACCCATTTTTCATTT 60.264 41.667 0.00 0.00 0.00 2.32
616 626 5.045286 CCCCATCCAACCCATTTTTCATTTA 60.045 40.000 0.00 0.00 0.00 1.40
617 627 6.353777 CCCCATCCAACCCATTTTTCATTTAT 60.354 38.462 0.00 0.00 0.00 1.40
618 628 6.543100 CCCATCCAACCCATTTTTCATTTATG 59.457 38.462 0.00 0.00 0.00 1.90
619 629 6.543100 CCATCCAACCCATTTTTCATTTATGG 59.457 38.462 0.00 0.00 38.82 2.74
620 630 6.942163 TCCAACCCATTTTTCATTTATGGA 57.058 33.333 0.00 0.00 41.05 3.41
621 631 7.507797 TCCAACCCATTTTTCATTTATGGAT 57.492 32.000 0.00 0.00 41.05 3.41
622 632 7.926705 TCCAACCCATTTTTCATTTATGGATT 58.073 30.769 0.00 0.00 41.05 3.01
623 633 7.828223 TCCAACCCATTTTTCATTTATGGATTG 59.172 33.333 0.00 0.00 40.96 2.67
624 634 7.828223 CCAACCCATTTTTCATTTATGGATTGA 59.172 33.333 8.65 0.00 42.99 2.57
625 635 9.228949 CAACCCATTTTTCATTTATGGATTGAA 57.771 29.630 1.93 0.00 42.99 2.69
626 636 9.804977 AACCCATTTTTCATTTATGGATTGAAA 57.195 25.926 0.00 0.00 41.05 2.69
627 637 9.230122 ACCCATTTTTCATTTATGGATTGAAAC 57.770 29.630 0.00 0.00 41.05 2.78
628 638 9.452287 CCCATTTTTCATTTATGGATTGAAACT 57.548 29.630 0.00 0.00 41.05 2.66
630 640 9.763465 CATTTTTCATTTATGGATTGAAACTGC 57.237 29.630 0.00 0.00 37.35 4.40
631 641 8.899427 TTTTTCATTTATGGATTGAAACTGCA 57.101 26.923 0.00 0.00 37.35 4.41
632 642 8.537049 TTTTCATTTATGGATTGAAACTGCAG 57.463 30.769 13.48 13.48 37.35 4.41
633 643 6.839124 TCATTTATGGATTGAAACTGCAGT 57.161 33.333 15.25 15.25 0.00 4.40
634 644 7.230849 TCATTTATGGATTGAAACTGCAGTT 57.769 32.000 26.36 26.36 40.50 3.16
644 654 1.544686 AACTGCAGTTTGAAAACGCG 58.455 45.000 26.36 3.53 43.51 6.01
645 655 0.248458 ACTGCAGTTTGAAAACGCGG 60.248 50.000 15.25 20.10 43.58 6.46
646 656 0.028770 CTGCAGTTTGAAAACGCGGA 59.971 50.000 12.47 8.29 42.15 5.54
647 657 0.248296 TGCAGTTTGAAAACGCGGAC 60.248 50.000 12.47 0.00 43.51 4.79
648 658 0.248296 GCAGTTTGAAAACGCGGACA 60.248 50.000 12.47 1.49 43.51 4.02
649 659 1.462791 CAGTTTGAAAACGCGGACAC 58.537 50.000 12.47 0.00 43.51 3.67
650 660 1.088306 AGTTTGAAAACGCGGACACA 58.912 45.000 12.47 2.30 43.51 3.72
651 661 1.469308 AGTTTGAAAACGCGGACACAA 59.531 42.857 12.47 8.97 43.51 3.33
652 662 1.843753 GTTTGAAAACGCGGACACAAG 59.156 47.619 12.47 0.00 0.00 3.16
653 663 1.370609 TTGAAAACGCGGACACAAGA 58.629 45.000 12.47 0.00 0.00 3.02
654 664 1.370609 TGAAAACGCGGACACAAGAA 58.629 45.000 12.47 0.00 0.00 2.52
655 665 1.329292 TGAAAACGCGGACACAAGAAG 59.671 47.619 12.47 0.00 0.00 2.85
656 666 0.028902 AAAACGCGGACACAAGAAGC 59.971 50.000 12.47 0.00 0.00 3.86
657 667 0.814010 AAACGCGGACACAAGAAGCT 60.814 50.000 12.47 0.00 0.00 3.74
658 668 1.498865 AACGCGGACACAAGAAGCTG 61.499 55.000 12.47 0.00 0.00 4.24
659 669 2.671177 CGCGGACACAAGAAGCTGG 61.671 63.158 0.00 0.00 0.00 4.85
660 670 1.598130 GCGGACACAAGAAGCTGGT 60.598 57.895 0.00 0.00 0.00 4.00
661 671 1.845809 GCGGACACAAGAAGCTGGTG 61.846 60.000 0.52 0.52 40.93 4.17
664 674 2.408333 ACACAAGAAGCTGGTGTGC 58.592 52.632 19.33 0.00 45.72 4.57
665 675 0.107017 ACACAAGAAGCTGGTGTGCT 60.107 50.000 19.33 8.43 45.72 4.40
666 676 0.309922 CACAAGAAGCTGGTGTGCTG 59.690 55.000 10.66 0.00 43.24 4.41
667 677 0.820891 ACAAGAAGCTGGTGTGCTGG 60.821 55.000 0.00 0.00 43.24 4.85
668 678 0.535780 CAAGAAGCTGGTGTGCTGGA 60.536 55.000 0.00 0.00 43.24 3.86
669 679 0.536006 AAGAAGCTGGTGTGCTGGAC 60.536 55.000 0.00 0.00 43.24 4.02
670 680 1.227943 GAAGCTGGTGTGCTGGACA 60.228 57.895 0.00 0.00 43.24 4.02
671 681 0.819259 GAAGCTGGTGTGCTGGACAA 60.819 55.000 2.79 0.00 43.24 3.18
672 682 1.103398 AAGCTGGTGTGCTGGACAAC 61.103 55.000 10.68 10.68 43.24 3.32
673 683 2.555547 GCTGGTGTGCTGGACAACC 61.556 63.158 14.93 13.11 42.23 3.77
679 689 2.283101 TGCTGGACAACCCATGCC 60.283 61.111 0.00 0.00 45.57 4.40
685 695 2.034066 ACAACCCATGCCCGTGAG 59.966 61.111 0.00 0.00 0.00 3.51
721 731 0.036388 CACCGCTGTGGGTAGTTGAT 60.036 55.000 12.58 0.00 44.64 2.57
722 732 0.249398 ACCGCTGTGGGTAGTTGATC 59.751 55.000 12.58 0.00 44.64 2.92
723 733 0.537188 CCGCTGTGGGTAGTTGATCT 59.463 55.000 0.00 0.00 0.00 2.75
725 735 2.271800 CGCTGTGGGTAGTTGATCTTC 58.728 52.381 0.00 0.00 0.00 2.87
727 737 2.893637 CTGTGGGTAGTTGATCTTCGG 58.106 52.381 0.00 0.00 0.00 4.30
728 738 1.066430 TGTGGGTAGTTGATCTTCGGC 60.066 52.381 0.00 0.00 0.00 5.54
729 739 1.207329 GTGGGTAGTTGATCTTCGGCT 59.793 52.381 0.00 0.00 0.00 5.52
730 740 1.906574 TGGGTAGTTGATCTTCGGCTT 59.093 47.619 0.00 0.00 0.00 4.35
731 741 2.093658 TGGGTAGTTGATCTTCGGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
733 743 3.596214 GGTAGTTGATCTTCGGCTTCAA 58.404 45.455 0.00 0.00 0.00 2.69
735 745 4.093556 GGTAGTTGATCTTCGGCTTCAAAG 59.906 45.833 0.00 0.00 31.66 2.77
737 747 4.894784 AGTTGATCTTCGGCTTCAAAGTA 58.105 39.130 0.00 0.00 31.66 2.24
739 749 3.262420 TGATCTTCGGCTTCAAAGTAGC 58.738 45.455 0.00 0.00 37.91 3.58
741 751 2.688507 TCTTCGGCTTCAAAGTAGCAG 58.311 47.619 0.00 0.00 40.42 4.24
742 752 1.734465 CTTCGGCTTCAAAGTAGCAGG 59.266 52.381 0.00 0.00 40.42 4.85
744 754 1.079503 CGGCTTCAAAGTAGCAGGTC 58.920 55.000 0.00 0.00 40.42 3.85
745 755 1.338200 CGGCTTCAAAGTAGCAGGTCT 60.338 52.381 0.00 0.00 40.42 3.85
747 757 2.485814 GGCTTCAAAGTAGCAGGTCTTG 59.514 50.000 0.00 0.00 40.42 3.02
748 758 3.142174 GCTTCAAAGTAGCAGGTCTTGT 58.858 45.455 0.00 0.00 38.51 3.16
749 759 3.187432 GCTTCAAAGTAGCAGGTCTTGTC 59.813 47.826 0.00 0.00 38.51 3.18
752 762 3.641436 TCAAAGTAGCAGGTCTTGTCTGA 59.359 43.478 0.00 0.00 34.36 3.27
754 764 3.883830 AGTAGCAGGTCTTGTCTGATG 57.116 47.619 0.00 0.00 34.36 3.07
756 766 2.469274 AGCAGGTCTTGTCTGATGTG 57.531 50.000 0.00 0.00 34.36 3.21
757 767 1.696336 AGCAGGTCTTGTCTGATGTGT 59.304 47.619 0.00 0.00 34.36 3.72
759 769 3.056250 AGCAGGTCTTGTCTGATGTGTAG 60.056 47.826 0.00 0.00 34.36 2.74
760 770 3.306364 GCAGGTCTTGTCTGATGTGTAGT 60.306 47.826 0.00 0.00 34.36 2.73
762 772 5.645624 CAGGTCTTGTCTGATGTGTAGTAG 58.354 45.833 0.00 0.00 34.36 2.57
763 773 4.707448 AGGTCTTGTCTGATGTGTAGTAGG 59.293 45.833 0.00 0.00 0.00 3.18
764 774 4.142138 GGTCTTGTCTGATGTGTAGTAGGG 60.142 50.000 0.00 0.00 0.00 3.53
766 776 4.705507 TCTTGTCTGATGTGTAGTAGGGTC 59.294 45.833 0.00 0.00 0.00 4.46
767 777 3.014623 TGTCTGATGTGTAGTAGGGTCG 58.985 50.000 0.00 0.00 0.00 4.79
770 780 2.097036 TGATGTGTAGTAGGGTCGGTG 58.903 52.381 0.00 0.00 0.00 4.94
771 781 2.291089 TGATGTGTAGTAGGGTCGGTGA 60.291 50.000 0.00 0.00 0.00 4.02
773 783 1.074405 TGTGTAGTAGGGTCGGTGAGT 59.926 52.381 0.00 0.00 0.00 3.41
774 784 1.742268 GTGTAGTAGGGTCGGTGAGTC 59.258 57.143 0.00 0.00 0.00 3.36
775 785 1.012841 GTAGTAGGGTCGGTGAGTCG 58.987 60.000 0.00 0.00 0.00 4.18
777 787 1.377725 GTAGGGTCGGTGAGTCGGA 60.378 63.158 0.00 0.00 0.00 4.55
778 788 1.077930 TAGGGTCGGTGAGTCGGAG 60.078 63.158 0.00 0.00 0.00 4.63
779 789 2.547640 TAGGGTCGGTGAGTCGGAGG 62.548 65.000 0.00 0.00 0.00 4.30
780 790 4.131088 GGTCGGTGAGTCGGAGGC 62.131 72.222 0.00 0.00 0.00 4.70
781 791 4.477975 GTCGGTGAGTCGGAGGCG 62.478 72.222 0.00 0.00 36.95 5.52
816 826 4.778143 GGCACCAGGACGCCGATT 62.778 66.667 8.66 0.00 38.82 3.34
817 827 3.195698 GCACCAGGACGCCGATTC 61.196 66.667 0.00 0.00 0.00 2.52
818 828 2.511600 CACCAGGACGCCGATTCC 60.512 66.667 0.00 0.00 0.00 3.01
819 829 4.143333 ACCAGGACGCCGATTCCG 62.143 66.667 0.00 0.00 38.29 4.30
820 830 3.833645 CCAGGACGCCGATTCCGA 61.834 66.667 0.00 0.00 38.29 4.55
822 832 2.439701 AGGACGCCGATTCCGAGA 60.440 61.111 0.00 0.00 38.29 4.04
824 977 1.153706 GGACGCCGATTCCGAGAAA 60.154 57.895 0.00 0.00 38.22 2.52
872 1025 3.795688 AAAATGGCCACAAGAGAGAGA 57.204 42.857 8.16 0.00 0.00 3.10
873 1026 3.347077 AAATGGCCACAAGAGAGAGAG 57.653 47.619 8.16 0.00 0.00 3.20
874 1027 2.244486 ATGGCCACAAGAGAGAGAGA 57.756 50.000 8.16 0.00 0.00 3.10
875 1028 1.554836 TGGCCACAAGAGAGAGAGAG 58.445 55.000 0.00 0.00 0.00 3.20
876 1029 1.076187 TGGCCACAAGAGAGAGAGAGA 59.924 52.381 0.00 0.00 0.00 3.10
877 1030 1.750778 GGCCACAAGAGAGAGAGAGAG 59.249 57.143 0.00 0.00 0.00 3.20
878 1031 2.446435 GCCACAAGAGAGAGAGAGAGT 58.554 52.381 0.00 0.00 0.00 3.24
879 1032 3.616219 GCCACAAGAGAGAGAGAGAGTA 58.384 50.000 0.00 0.00 0.00 2.59
880 1033 3.627577 GCCACAAGAGAGAGAGAGAGTAG 59.372 52.174 0.00 0.00 0.00 2.57
881 1034 4.625324 GCCACAAGAGAGAGAGAGAGTAGA 60.625 50.000 0.00 0.00 0.00 2.59
882 1035 5.118990 CCACAAGAGAGAGAGAGAGTAGAG 58.881 50.000 0.00 0.00 0.00 2.43
883 1036 4.572389 CACAAGAGAGAGAGAGAGTAGAGC 59.428 50.000 0.00 0.00 0.00 4.09
884 1037 4.225042 ACAAGAGAGAGAGAGAGTAGAGCA 59.775 45.833 0.00 0.00 0.00 4.26
885 1038 4.679373 AGAGAGAGAGAGAGTAGAGCAG 57.321 50.000 0.00 0.00 0.00 4.24
886 1039 4.290093 AGAGAGAGAGAGAGTAGAGCAGA 58.710 47.826 0.00 0.00 0.00 4.26
887 1040 4.343526 AGAGAGAGAGAGAGTAGAGCAGAG 59.656 50.000 0.00 0.00 0.00 3.35
888 1041 4.033709 AGAGAGAGAGAGTAGAGCAGAGT 58.966 47.826 0.00 0.00 0.00 3.24
889 1042 5.208890 AGAGAGAGAGAGTAGAGCAGAGTA 58.791 45.833 0.00 0.00 0.00 2.59
890 1043 5.303078 AGAGAGAGAGAGTAGAGCAGAGTAG 59.697 48.000 0.00 0.00 0.00 2.57
891 1044 5.208890 AGAGAGAGAGTAGAGCAGAGTAGA 58.791 45.833 0.00 0.00 0.00 2.59
892 1045 5.661312 AGAGAGAGAGTAGAGCAGAGTAGAA 59.339 44.000 0.00 0.00 0.00 2.10
893 1046 5.918608 AGAGAGAGTAGAGCAGAGTAGAAG 58.081 45.833 0.00 0.00 0.00 2.85
894 1047 5.661312 AGAGAGAGTAGAGCAGAGTAGAAGA 59.339 44.000 0.00 0.00 0.00 2.87
895 1048 6.156256 AGAGAGAGTAGAGCAGAGTAGAAGAA 59.844 42.308 0.00 0.00 0.00 2.52
896 1049 6.717289 AGAGAGTAGAGCAGAGTAGAAGAAA 58.283 40.000 0.00 0.00 0.00 2.52
897 1050 7.172342 AGAGAGTAGAGCAGAGTAGAAGAAAA 58.828 38.462 0.00 0.00 0.00 2.29
898 1051 7.336931 AGAGAGTAGAGCAGAGTAGAAGAAAAG 59.663 40.741 0.00 0.00 0.00 2.27
899 1052 7.172342 AGAGTAGAGCAGAGTAGAAGAAAAGA 58.828 38.462 0.00 0.00 0.00 2.52
900 1053 7.834181 AGAGTAGAGCAGAGTAGAAGAAAAGAT 59.166 37.037 0.00 0.00 0.00 2.40
901 1054 9.116067 GAGTAGAGCAGAGTAGAAGAAAAGATA 57.884 37.037 0.00 0.00 0.00 1.98
902 1055 8.899771 AGTAGAGCAGAGTAGAAGAAAAGATAC 58.100 37.037 0.00 0.00 0.00 2.24
903 1056 7.954666 AGAGCAGAGTAGAAGAAAAGATACT 57.045 36.000 0.00 0.00 0.00 2.12
904 1057 7.771183 AGAGCAGAGTAGAAGAAAAGATACTG 58.229 38.462 0.00 0.00 0.00 2.74
905 1058 6.872920 AGCAGAGTAGAAGAAAAGATACTGG 58.127 40.000 0.00 0.00 0.00 4.00
906 1059 6.045955 GCAGAGTAGAAGAAAAGATACTGGG 58.954 44.000 0.00 0.00 0.00 4.45
939 1092 3.198872 GACGGAGAGAAGCCCATTTTAG 58.801 50.000 0.00 0.00 0.00 1.85
942 1095 4.141914 ACGGAGAGAAGCCCATTTTAGTAG 60.142 45.833 0.00 0.00 0.00 2.57
945 1098 4.518249 AGAGAAGCCCATTTTAGTAGCAC 58.482 43.478 0.00 0.00 0.00 4.40
948 1101 2.723273 AGCCCATTTTAGTAGCACCAC 58.277 47.619 0.00 0.00 0.00 4.16
972 1135 2.579873 CCTGTTTATCCTGCCTCCATG 58.420 52.381 0.00 0.00 0.00 3.66
975 1138 0.185901 TTTATCCTGCCTCCATGCCC 59.814 55.000 0.00 0.00 0.00 5.36
976 1139 2.055689 TTATCCTGCCTCCATGCCCG 62.056 60.000 0.00 0.00 0.00 6.13
988 1151 2.353357 CATGCCCGCCATGGATATAT 57.647 50.000 18.40 0.00 46.09 0.86
989 1152 3.490439 CATGCCCGCCATGGATATATA 57.510 47.619 18.40 0.00 46.09 0.86
990 1153 4.025040 CATGCCCGCCATGGATATATAT 57.975 45.455 18.40 0.00 46.09 0.86
991 1154 3.769739 TGCCCGCCATGGATATATATC 57.230 47.619 18.40 13.50 42.00 1.63
1052 1251 1.135286 CCAAAGCCAAGGAGAAATCGC 60.135 52.381 0.00 0.00 0.00 4.58
1054 1253 1.743996 AAGCCAAGGAGAAATCGCTC 58.256 50.000 0.00 0.00 0.00 5.03
1080 1284 0.331036 ACCCTATCCTCTCCTCCCCT 60.331 60.000 0.00 0.00 0.00 4.79
1081 1285 0.411848 CCCTATCCTCTCCTCCCCTC 59.588 65.000 0.00 0.00 0.00 4.30
1082 1286 0.411848 CCTATCCTCTCCTCCCCTCC 59.588 65.000 0.00 0.00 0.00 4.30
1083 1287 0.411848 CTATCCTCTCCTCCCCTCCC 59.588 65.000 0.00 0.00 0.00 4.30
1084 1288 1.080927 TATCCTCTCCTCCCCTCCCC 61.081 65.000 0.00 0.00 0.00 4.81
1085 1289 2.929738 ATCCTCTCCTCCCCTCCCCT 62.930 65.000 0.00 0.00 0.00 4.79
1086 1290 2.612251 CTCTCCTCCCCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
1087 1291 3.036959 TCTCCTCCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1088 1292 4.179599 CTCCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1091 1295 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1120 1324 1.250840 GCAGGCACCCAAAACCCTAG 61.251 60.000 0.00 0.00 0.00 3.02
1121 1325 1.076727 AGGCACCCAAAACCCTAGC 59.923 57.895 0.00 0.00 0.00 3.42
1122 1326 2.340328 GGCACCCAAAACCCTAGCG 61.340 63.158 0.00 0.00 0.00 4.26
1123 1327 2.989881 GCACCCAAAACCCTAGCGC 61.990 63.158 0.00 0.00 0.00 5.92
1124 1328 2.035155 ACCCAAAACCCTAGCGCC 59.965 61.111 2.29 0.00 0.00 6.53
1125 1329 3.131478 CCCAAAACCCTAGCGCCG 61.131 66.667 2.29 0.00 0.00 6.46
1126 1330 3.810896 CCAAAACCCTAGCGCCGC 61.811 66.667 2.29 0.00 0.00 6.53
1127 1331 3.810896 CAAAACCCTAGCGCCGCC 61.811 66.667 4.98 0.00 0.00 6.13
1152 1356 1.569708 GGATCTTTCTCTGCAGCTCG 58.430 55.000 9.47 0.00 0.00 5.03
1154 1358 0.461693 ATCTTTCTCTGCAGCTCGCC 60.462 55.000 9.47 0.00 41.33 5.54
1155 1359 2.046892 TTTCTCTGCAGCTCGCCC 60.047 61.111 9.47 0.00 41.33 6.13
1156 1360 3.612247 TTTCTCTGCAGCTCGCCCC 62.612 63.158 9.47 0.00 41.33 5.80
1158 1362 4.527583 CTCTGCAGCTCGCCCCTC 62.528 72.222 9.47 0.00 41.33 4.30
1178 1382 3.242291 CCCCCTACCTGCCGGATC 61.242 72.222 5.05 0.00 0.00 3.36
1233 1441 0.101399 CTCGGTCGAGATCTGGTTGG 59.899 60.000 14.45 0.00 44.53 3.77
1252 1460 3.292460 TGGTTGGTTGGTTGGTTTCTAG 58.708 45.455 0.00 0.00 0.00 2.43
1253 1461 2.035449 GGTTGGTTGGTTGGTTTCTAGC 59.965 50.000 0.00 0.00 0.00 3.42
1254 1462 2.956333 GTTGGTTGGTTGGTTTCTAGCT 59.044 45.455 0.00 0.00 0.00 3.32
1255 1463 4.139038 GTTGGTTGGTTGGTTTCTAGCTA 58.861 43.478 0.00 0.00 0.00 3.32
1256 1464 4.015872 TGGTTGGTTGGTTTCTAGCTAG 57.984 45.455 15.01 15.01 0.00 3.42
1262 1470 4.473559 TGGTTGGTTTCTAGCTAGGCTAAT 59.526 41.667 20.58 0.00 40.82 1.73
1286 1494 7.843490 TCTAATCTAGGGTTTGTTTGAATCG 57.157 36.000 0.00 0.00 0.00 3.34
1290 1498 6.737254 TCTAGGGTTTGTTTGAATCGAATC 57.263 37.500 0.00 0.00 0.00 2.52
1291 1499 4.419522 AGGGTTTGTTTGAATCGAATCG 57.580 40.909 0.00 0.00 0.00 3.34
1292 1500 4.069304 AGGGTTTGTTTGAATCGAATCGA 58.931 39.130 8.12 8.12 41.13 3.59
1293 1501 4.517453 AGGGTTTGTTTGAATCGAATCGAA 59.483 37.500 10.12 0.00 39.99 3.71
1294 1502 5.183140 AGGGTTTGTTTGAATCGAATCGAAT 59.817 36.000 10.12 0.00 39.99 3.34
1295 1503 5.511729 GGGTTTGTTTGAATCGAATCGAATC 59.488 40.000 10.12 11.92 39.99 2.52
1296 1504 5.225129 GGTTTGTTTGAATCGAATCGAATCG 59.775 40.000 16.66 16.66 38.45 3.34
1329 1537 3.586100 TCCAATCGAATTGACACGAGA 57.414 42.857 8.56 0.00 42.83 4.04
1330 1538 3.511699 TCCAATCGAATTGACACGAGAG 58.488 45.455 8.56 0.00 42.83 3.20
1331 1539 3.192633 TCCAATCGAATTGACACGAGAGA 59.807 43.478 8.56 0.00 42.83 3.10
1332 1540 3.549471 CCAATCGAATTGACACGAGAGAG 59.451 47.826 8.56 0.00 42.83 3.20
1333 1541 2.264109 TCGAATTGACACGAGAGAGC 57.736 50.000 0.00 0.00 34.49 4.09
1334 1542 1.813178 TCGAATTGACACGAGAGAGCT 59.187 47.619 0.00 0.00 34.49 4.09
1591 1808 1.918957 AGGCAAGCCCCCTCATATATC 59.081 52.381 7.62 0.00 36.58 1.63
1593 1810 1.635487 GCAAGCCCCCTCATATATCCA 59.365 52.381 0.00 0.00 0.00 3.41
1595 1812 3.686691 GCAAGCCCCCTCATATATCCATC 60.687 52.174 0.00 0.00 0.00 3.51
1596 1813 2.781667 AGCCCCCTCATATATCCATCC 58.218 52.381 0.00 0.00 0.00 3.51
1597 1814 2.047722 AGCCCCCTCATATATCCATCCA 59.952 50.000 0.00 0.00 0.00 3.41
1598 1815 2.173569 GCCCCCTCATATATCCATCCAC 59.826 54.545 0.00 0.00 0.00 4.02
1599 1816 2.780010 CCCCCTCATATATCCATCCACC 59.220 54.545 0.00 0.00 0.00 4.61
1600 1817 3.571941 CCCCCTCATATATCCATCCACCT 60.572 52.174 0.00 0.00 0.00 4.00
1601 1818 4.327737 CCCCCTCATATATCCATCCACCTA 60.328 50.000 0.00 0.00 0.00 3.08
1602 1819 4.656112 CCCCTCATATATCCATCCACCTAC 59.344 50.000 0.00 0.00 0.00 3.18
1603 1820 5.533112 CCCTCATATATCCATCCACCTACT 58.467 45.833 0.00 0.00 0.00 2.57
1604 1821 6.355715 CCCCTCATATATCCATCCACCTACTA 60.356 46.154 0.00 0.00 0.00 1.82
1605 1822 7.309091 CCCTCATATATCCATCCACCTACTAT 58.691 42.308 0.00 0.00 0.00 2.12
1606 1823 8.456940 CCCTCATATATCCATCCACCTACTATA 58.543 40.741 0.00 0.00 0.00 1.31
1607 1824 9.303116 CCTCATATATCCATCCACCTACTATAC 57.697 40.741 0.00 0.00 0.00 1.47
1739 2402 6.834959 CTACATACTTGTAGCCTGTCAATG 57.165 41.667 0.60 0.00 46.46 2.82
1740 2403 5.165961 ACATACTTGTAGCCTGTCAATGT 57.834 39.130 0.00 0.00 33.16 2.71
1851 2516 9.988350 ATTACTTGTCTCTGTTAAATAAATGCG 57.012 29.630 0.00 0.00 0.00 4.73
1857 2554 9.176181 TGTCTCTGTTAAATAAATGCGAAAAAC 57.824 29.630 0.00 0.00 0.00 2.43
1905 2602 1.530323 AAACTGCAACATACCGACCC 58.470 50.000 0.00 0.00 0.00 4.46
1906 2603 0.690762 AACTGCAACATACCGACCCT 59.309 50.000 0.00 0.00 0.00 4.34
1907 2604 1.563924 ACTGCAACATACCGACCCTA 58.436 50.000 0.00 0.00 0.00 3.53
2017 2738 9.787532 GCTAACAGATTCAATAATGTAGCAAAA 57.212 29.630 0.00 0.00 0.00 2.44
3484 4458 2.224549 AGAGTTCTCTCGTCAAGTCGTG 59.775 50.000 0.00 0.00 44.65 4.35
4099 5088 6.573664 TTGCAGCACTACATAAAATTGACT 57.426 33.333 0.00 0.00 0.00 3.41
4453 5487 9.047947 ACCATCTTTTCTAACCTATGAAGTACT 57.952 33.333 0.00 0.00 0.00 2.73
4839 5956 1.383803 TTTTGGCACCAAGGGGCTT 60.384 52.632 13.85 0.00 37.24 4.35
4926 6057 8.167605 TGTTTTTGGATTGCATGATTTTGATT 57.832 26.923 0.00 0.00 0.00 2.57
5278 6440 3.134458 GCAGCAGCTGTACCCTATTTAG 58.866 50.000 23.60 0.00 37.91 1.85
5279 6441 3.432326 GCAGCAGCTGTACCCTATTTAGT 60.432 47.826 23.60 0.00 37.91 2.24
5280 6442 4.372656 CAGCAGCTGTACCCTATTTAGTC 58.627 47.826 16.64 0.00 0.00 2.59
5281 6443 4.100189 CAGCAGCTGTACCCTATTTAGTCT 59.900 45.833 16.64 0.00 0.00 3.24
5772 7137 4.651994 CGTGCAGGACAAATCTTAACATC 58.348 43.478 0.00 0.00 0.00 3.06
5773 7138 4.437390 CGTGCAGGACAAATCTTAACATCC 60.437 45.833 0.00 0.00 0.00 3.51
5774 7139 3.689161 TGCAGGACAAATCTTAACATCCG 59.311 43.478 0.00 0.00 0.00 4.18
5775 7140 3.689649 GCAGGACAAATCTTAACATCCGT 59.310 43.478 0.00 0.00 0.00 4.69
6022 7482 6.183360 GGATGAAACTACTATTGGGTGCTTTC 60.183 42.308 0.00 0.00 0.00 2.62
6023 7483 4.693566 TGAAACTACTATTGGGTGCTTTCG 59.306 41.667 0.00 0.00 0.00 3.46
6024 7484 3.261981 ACTACTATTGGGTGCTTTCGG 57.738 47.619 0.00 0.00 0.00 4.30
6082 7542 3.053544 TGTTGGTTGTGTTCTTCCCCTTA 60.054 43.478 0.00 0.00 0.00 2.69
6083 7543 4.149598 GTTGGTTGTGTTCTTCCCCTTAT 58.850 43.478 0.00 0.00 0.00 1.73
6084 7544 4.463050 TGGTTGTGTTCTTCCCCTTATT 57.537 40.909 0.00 0.00 0.00 1.40
6099 7559 4.345547 CCCCTTATTCTCTAAGTGACCTCC 59.654 50.000 0.00 0.00 0.00 4.30
6103 7563 2.125773 TCTCTAAGTGACCTCCGACC 57.874 55.000 0.00 0.00 0.00 4.79
6104 7564 1.104630 CTCTAAGTGACCTCCGACCC 58.895 60.000 0.00 0.00 0.00 4.46
6132 7592 0.861837 GTCAGGTGTTCGAGTGCTTG 59.138 55.000 0.00 0.00 0.00 4.01
6172 7632 4.714308 ACCTCCTTTGGTTCAATGAACAAA 59.286 37.500 25.14 18.79 43.54 2.83
6244 7714 4.692155 TGCCATGCATACATAATCTCTTCG 59.308 41.667 0.00 0.00 33.67 3.79
6288 7758 1.202927 TCTTCTGGAAGCAAAGGGTGG 60.203 52.381 5.55 0.00 38.28 4.61
6392 7872 2.936202 ACATCGAGGAAAATGGGATGG 58.064 47.619 3.06 0.00 38.97 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.891756 CCATGCAAAACAGAGGGAGAATAT 59.108 41.667 0.00 0.00 0.00 1.28
97 98 1.600916 GCCAGGTCCACCTCAACAC 60.601 63.158 0.00 0.00 46.65 3.32
118 119 1.120530 AGTGACGATCATACCACCCC 58.879 55.000 0.00 0.00 0.00 4.95
139 140 0.456221 AATACCACGTCTGCTCGGAG 59.544 55.000 0.00 0.00 34.94 4.63
146 147 6.042777 ACATTAGATCACAATACCACGTCTG 58.957 40.000 0.00 0.00 0.00 3.51
156 157 5.255687 TGCACCAGAACATTAGATCACAAT 58.744 37.500 0.00 0.00 0.00 2.71
158 159 4.284829 TGCACCAGAACATTAGATCACA 57.715 40.909 0.00 0.00 0.00 3.58
166 167 4.141756 TGGACAAAAATGCACCAGAACATT 60.142 37.500 0.00 0.00 38.11 2.71
193 195 5.782845 ACCTAAATAAATGGGGCAACTTTCA 59.217 36.000 0.00 0.00 0.00 2.69
262 264 6.419980 TTTTCCTTTGATGTGCAAAACAAG 57.580 33.333 0.00 0.00 45.26 3.16
296 298 8.891671 TCTAACGCTAACCTTTTAAGAAAGAA 57.108 30.769 0.70 0.00 44.03 2.52
304 306 5.640783 GCCTCTTTCTAACGCTAACCTTTTA 59.359 40.000 0.00 0.00 0.00 1.52
308 310 2.416972 CGCCTCTTTCTAACGCTAACCT 60.417 50.000 0.00 0.00 0.00 3.50
313 315 1.218316 CCCGCCTCTTTCTAACGCT 59.782 57.895 0.00 0.00 0.00 5.07
315 317 0.815734 TCTCCCGCCTCTTTCTAACG 59.184 55.000 0.00 0.00 0.00 3.18
318 320 3.638860 TGTTATCTCCCGCCTCTTTCTA 58.361 45.455 0.00 0.00 0.00 2.10
320 322 2.981859 TGTTATCTCCCGCCTCTTTC 57.018 50.000 0.00 0.00 0.00 2.62
326 328 2.095372 CGAGTTTTTGTTATCTCCCGCC 59.905 50.000 0.00 0.00 0.00 6.13
330 332 6.675728 GCTTCCATCGAGTTTTTGTTATCTCC 60.676 42.308 0.00 0.00 0.00 3.71
333 335 5.106317 TGGCTTCCATCGAGTTTTTGTTATC 60.106 40.000 0.00 0.00 0.00 1.75
346 348 2.415893 GGTTTTGATGTGGCTTCCATCG 60.416 50.000 7.51 0.00 41.28 3.84
348 350 2.893424 AGGTTTTGATGTGGCTTCCAT 58.107 42.857 0.00 0.00 35.28 3.41
350 352 2.365293 ACAAGGTTTTGATGTGGCTTCC 59.635 45.455 0.00 0.00 37.73 3.46
366 372 9.864034 CGATATTGTGCTACTTTTATTACAAGG 57.136 33.333 0.00 0.00 32.38 3.61
372 378 6.765989 TGCCTCGATATTGTGCTACTTTTATT 59.234 34.615 8.16 0.00 0.00 1.40
374 380 5.666462 TGCCTCGATATTGTGCTACTTTTA 58.334 37.500 8.16 0.00 0.00 1.52
377 383 3.819564 TGCCTCGATATTGTGCTACTT 57.180 42.857 8.16 0.00 0.00 2.24
385 391 3.070018 GGGAGTTGATGCCTCGATATTG 58.930 50.000 0.00 0.00 36.22 1.90
395 401 0.255890 TAGCTTGGGGGAGTTGATGC 59.744 55.000 0.00 0.00 0.00 3.91
399 405 2.040412 AGACTTTAGCTTGGGGGAGTTG 59.960 50.000 0.00 0.00 0.00 3.16
410 416 3.517100 TGAGGATGAGCAAGACTTTAGCT 59.483 43.478 0.00 0.00 42.17 3.32
414 420 3.080319 GCTTGAGGATGAGCAAGACTTT 58.920 45.455 0.00 0.00 38.73 2.66
444 454 9.901172 GGTTTACTCCCTTTCATTCTTCTTATA 57.099 33.333 0.00 0.00 0.00 0.98
465 475 6.320672 TGGTTTTGAAACTATTCACGGGTTTA 59.679 34.615 6.57 0.00 45.01 2.01
466 476 5.127356 TGGTTTTGAAACTATTCACGGGTTT 59.873 36.000 6.57 0.00 45.01 3.27
467 477 4.645588 TGGTTTTGAAACTATTCACGGGTT 59.354 37.500 6.57 0.00 45.01 4.11
468 478 4.208746 TGGTTTTGAAACTATTCACGGGT 58.791 39.130 6.57 0.00 45.01 5.28
469 479 4.517453 TCTGGTTTTGAAACTATTCACGGG 59.483 41.667 6.57 0.00 45.01 5.28
471 481 7.359595 TCAATCTGGTTTTGAAACTATTCACG 58.640 34.615 6.57 0.00 45.01 4.35
472 482 9.696917 ATTCAATCTGGTTTTGAAACTATTCAC 57.303 29.630 6.57 0.00 45.01 3.18
473 483 9.912634 GATTCAATCTGGTTTTGAAACTATTCA 57.087 29.630 6.57 0.00 43.94 2.57
474 484 9.358872 GGATTCAATCTGGTTTTGAAACTATTC 57.641 33.333 6.57 0.00 43.94 1.75
475 485 8.869109 TGGATTCAATCTGGTTTTGAAACTATT 58.131 29.630 6.57 2.81 43.94 1.73
477 487 7.523709 GCTGGATTCAATCTGGTTTTGAAACTA 60.524 37.037 6.57 0.02 43.94 2.24
478 488 6.729690 TGGATTCAATCTGGTTTTGAAACT 57.270 33.333 6.57 0.00 43.94 2.66
480 490 5.511202 GGCTGGATTCAATCTGGTTTTGAAA 60.511 40.000 0.00 0.00 43.94 2.69
481 491 4.021192 GGCTGGATTCAATCTGGTTTTGAA 60.021 41.667 0.00 1.76 44.60 2.69
482 492 3.511146 GGCTGGATTCAATCTGGTTTTGA 59.489 43.478 0.00 0.00 0.00 2.69
483 493 3.368739 GGGCTGGATTCAATCTGGTTTTG 60.369 47.826 0.00 0.00 0.00 2.44
484 494 2.833943 GGGCTGGATTCAATCTGGTTTT 59.166 45.455 0.00 0.00 0.00 2.43
485 495 2.225343 TGGGCTGGATTCAATCTGGTTT 60.225 45.455 0.00 0.00 0.00 3.27
486 496 1.358787 TGGGCTGGATTCAATCTGGTT 59.641 47.619 0.00 0.00 0.00 3.67
487 497 1.002069 TGGGCTGGATTCAATCTGGT 58.998 50.000 0.00 0.00 0.00 4.00
488 498 2.148446 TTGGGCTGGATTCAATCTGG 57.852 50.000 0.00 0.00 0.00 3.86
489 499 2.167075 GGTTTGGGCTGGATTCAATCTG 59.833 50.000 0.00 0.00 0.00 2.90
490 500 2.225343 TGGTTTGGGCTGGATTCAATCT 60.225 45.455 0.00 0.00 0.00 2.40
491 501 2.178580 TGGTTTGGGCTGGATTCAATC 58.821 47.619 0.00 0.00 0.00 2.67
492 502 2.323999 TGGTTTGGGCTGGATTCAAT 57.676 45.000 0.00 0.00 0.00 2.57
493 503 2.323999 ATGGTTTGGGCTGGATTCAA 57.676 45.000 0.00 0.00 0.00 2.69
494 504 2.733956 GTATGGTTTGGGCTGGATTCA 58.266 47.619 0.00 0.00 0.00 2.57
495 505 1.676006 CGTATGGTTTGGGCTGGATTC 59.324 52.381 0.00 0.00 0.00 2.52
496 506 1.005450 ACGTATGGTTTGGGCTGGATT 59.995 47.619 0.00 0.00 0.00 3.01
497 507 0.623723 ACGTATGGTTTGGGCTGGAT 59.376 50.000 0.00 0.00 0.00 3.41
498 508 1.065998 GTACGTATGGTTTGGGCTGGA 60.066 52.381 0.00 0.00 0.00 3.86
499 509 1.375551 GTACGTATGGTTTGGGCTGG 58.624 55.000 0.00 0.00 0.00 4.85
500 510 1.003851 CGTACGTATGGTTTGGGCTG 58.996 55.000 7.22 0.00 0.00 4.85
501 511 0.896923 TCGTACGTATGGTTTGGGCT 59.103 50.000 16.05 0.00 0.00 5.19
502 512 1.135024 TCTCGTACGTATGGTTTGGGC 60.135 52.381 16.05 0.00 0.00 5.36
503 513 2.945447 TCTCGTACGTATGGTTTGGG 57.055 50.000 16.05 0.16 0.00 4.12
504 514 4.503007 CAGAATCTCGTACGTATGGTTTGG 59.497 45.833 16.05 3.04 0.00 3.28
505 515 4.026804 GCAGAATCTCGTACGTATGGTTTG 60.027 45.833 16.05 8.28 0.00 2.93
506 516 4.110482 GCAGAATCTCGTACGTATGGTTT 58.890 43.478 16.05 6.28 0.00 3.27
507 517 3.490419 GGCAGAATCTCGTACGTATGGTT 60.490 47.826 16.05 9.27 0.00 3.67
508 518 2.034305 GGCAGAATCTCGTACGTATGGT 59.966 50.000 16.05 0.33 0.00 3.55
509 519 2.293677 AGGCAGAATCTCGTACGTATGG 59.706 50.000 16.05 6.02 0.00 2.74
510 520 3.251245 AGAGGCAGAATCTCGTACGTATG 59.749 47.826 16.05 8.56 36.45 2.39
511 521 3.478509 AGAGGCAGAATCTCGTACGTAT 58.521 45.455 16.05 7.57 36.45 3.06
512 522 2.915349 AGAGGCAGAATCTCGTACGTA 58.085 47.619 16.05 5.31 36.45 3.57
513 523 1.752683 AGAGGCAGAATCTCGTACGT 58.247 50.000 16.05 0.00 36.45 3.57
514 524 2.853731 AAGAGGCAGAATCTCGTACG 57.146 50.000 9.53 9.53 36.45 3.67
515 525 4.111375 TGAAAGAGGCAGAATCTCGTAC 57.889 45.455 0.00 0.00 36.45 3.67
516 526 4.202161 GGATGAAAGAGGCAGAATCTCGTA 60.202 45.833 0.00 0.00 36.45 3.43
517 527 3.431486 GGATGAAAGAGGCAGAATCTCGT 60.431 47.826 0.00 0.00 36.45 4.18
518 528 3.129871 GGATGAAAGAGGCAGAATCTCG 58.870 50.000 0.00 0.00 36.45 4.04
519 529 3.129871 CGGATGAAAGAGGCAGAATCTC 58.870 50.000 0.00 0.00 0.00 2.75
520 530 2.768527 TCGGATGAAAGAGGCAGAATCT 59.231 45.455 0.00 0.00 0.00 2.40
521 531 3.185246 TCGGATGAAAGAGGCAGAATC 57.815 47.619 0.00 0.00 0.00 2.52
522 532 3.274288 GTTCGGATGAAAGAGGCAGAAT 58.726 45.455 0.00 0.00 35.46 2.40
523 533 2.615493 GGTTCGGATGAAAGAGGCAGAA 60.615 50.000 0.00 0.00 35.46 3.02
524 534 1.066143 GGTTCGGATGAAAGAGGCAGA 60.066 52.381 0.00 0.00 35.46 4.26
525 535 1.339055 TGGTTCGGATGAAAGAGGCAG 60.339 52.381 0.00 0.00 35.46 4.85
526 536 0.690192 TGGTTCGGATGAAAGAGGCA 59.310 50.000 0.00 0.00 35.46 4.75
527 537 1.821216 TTGGTTCGGATGAAAGAGGC 58.179 50.000 0.00 0.00 35.46 4.70
528 538 2.945668 GGATTGGTTCGGATGAAAGAGG 59.054 50.000 0.00 0.00 35.46 3.69
529 539 3.609853 TGGATTGGTTCGGATGAAAGAG 58.390 45.455 0.00 0.00 35.46 2.85
530 540 3.712016 TGGATTGGTTCGGATGAAAGA 57.288 42.857 0.00 0.00 35.46 2.52
531 541 4.202050 GGATTGGATTGGTTCGGATGAAAG 60.202 45.833 0.00 0.00 35.46 2.62
532 542 3.699038 GGATTGGATTGGTTCGGATGAAA 59.301 43.478 0.00 0.00 35.46 2.69
533 543 3.287222 GGATTGGATTGGTTCGGATGAA 58.713 45.455 0.00 0.00 0.00 2.57
534 544 2.240921 TGGATTGGATTGGTTCGGATGA 59.759 45.455 0.00 0.00 0.00 2.92
535 545 2.653726 TGGATTGGATTGGTTCGGATG 58.346 47.619 0.00 0.00 0.00 3.51
536 546 3.380471 TTGGATTGGATTGGTTCGGAT 57.620 42.857 0.00 0.00 0.00 4.18
537 547 2.823154 GTTTGGATTGGATTGGTTCGGA 59.177 45.455 0.00 0.00 0.00 4.55
538 548 2.825532 AGTTTGGATTGGATTGGTTCGG 59.174 45.455 0.00 0.00 0.00 4.30
539 549 4.519540 AAGTTTGGATTGGATTGGTTCG 57.480 40.909 0.00 0.00 0.00 3.95
540 550 6.649141 GGTTAAAGTTTGGATTGGATTGGTTC 59.351 38.462 0.00 0.00 0.00 3.62
541 551 6.100424 TGGTTAAAGTTTGGATTGGATTGGTT 59.900 34.615 0.00 0.00 0.00 3.67
542 552 5.604650 TGGTTAAAGTTTGGATTGGATTGGT 59.395 36.000 0.00 0.00 0.00 3.67
543 553 5.931724 GTGGTTAAAGTTTGGATTGGATTGG 59.068 40.000 0.00 0.00 0.00 3.16
544 554 5.931724 GGTGGTTAAAGTTTGGATTGGATTG 59.068 40.000 0.00 0.00 0.00 2.67
545 555 5.604650 TGGTGGTTAAAGTTTGGATTGGATT 59.395 36.000 0.00 0.00 0.00 3.01
546 556 5.151454 TGGTGGTTAAAGTTTGGATTGGAT 58.849 37.500 0.00 0.00 0.00 3.41
547 557 4.547671 TGGTGGTTAAAGTTTGGATTGGA 58.452 39.130 0.00 0.00 0.00 3.53
548 558 4.946478 TGGTGGTTAAAGTTTGGATTGG 57.054 40.909 0.00 0.00 0.00 3.16
549 559 7.487829 CGATTATGGTGGTTAAAGTTTGGATTG 59.512 37.037 0.00 0.00 0.00 2.67
550 560 7.394923 TCGATTATGGTGGTTAAAGTTTGGATT 59.605 33.333 0.00 0.00 0.00 3.01
551 561 6.887545 TCGATTATGGTGGTTAAAGTTTGGAT 59.112 34.615 0.00 0.00 0.00 3.41
552 562 6.239396 TCGATTATGGTGGTTAAAGTTTGGA 58.761 36.000 0.00 0.00 0.00 3.53
553 563 6.373216 TCTCGATTATGGTGGTTAAAGTTTGG 59.627 38.462 0.00 0.00 0.00 3.28
554 564 7.241376 GTCTCGATTATGGTGGTTAAAGTTTG 58.759 38.462 0.00 0.00 0.00 2.93
555 565 6.373495 GGTCTCGATTATGGTGGTTAAAGTTT 59.627 38.462 0.00 0.00 0.00 2.66
556 566 5.878669 GGTCTCGATTATGGTGGTTAAAGTT 59.121 40.000 0.00 0.00 0.00 2.66
557 567 5.046159 TGGTCTCGATTATGGTGGTTAAAGT 60.046 40.000 0.00 0.00 0.00 2.66
558 568 5.424757 TGGTCTCGATTATGGTGGTTAAAG 58.575 41.667 0.00 0.00 0.00 1.85
559 569 5.423704 TGGTCTCGATTATGGTGGTTAAA 57.576 39.130 0.00 0.00 0.00 1.52
560 570 5.423704 TTGGTCTCGATTATGGTGGTTAA 57.576 39.130 0.00 0.00 0.00 2.01
561 571 5.180271 GTTTGGTCTCGATTATGGTGGTTA 58.820 41.667 0.00 0.00 0.00 2.85
562 572 3.992943 TTGGTCTCGATTATGGTGGTT 57.007 42.857 0.00 0.00 0.00 3.67
563 573 3.606687 GTTTGGTCTCGATTATGGTGGT 58.393 45.455 0.00 0.00 0.00 4.16
564 574 2.943033 GGTTTGGTCTCGATTATGGTGG 59.057 50.000 0.00 0.00 0.00 4.61
565 575 3.374058 GTGGTTTGGTCTCGATTATGGTG 59.626 47.826 0.00 0.00 0.00 4.17
566 576 3.606687 GTGGTTTGGTCTCGATTATGGT 58.393 45.455 0.00 0.00 0.00 3.55
567 577 2.943033 GGTGGTTTGGTCTCGATTATGG 59.057 50.000 0.00 0.00 0.00 2.74
568 578 2.943033 GGGTGGTTTGGTCTCGATTATG 59.057 50.000 0.00 0.00 0.00 1.90
569 579 2.574369 TGGGTGGTTTGGTCTCGATTAT 59.426 45.455 0.00 0.00 0.00 1.28
570 580 1.979308 TGGGTGGTTTGGTCTCGATTA 59.021 47.619 0.00 0.00 0.00 1.75
571 581 0.768622 TGGGTGGTTTGGTCTCGATT 59.231 50.000 0.00 0.00 0.00 3.34
572 582 0.324943 CTGGGTGGTTTGGTCTCGAT 59.675 55.000 0.00 0.00 0.00 3.59
573 583 1.752198 CTGGGTGGTTTGGTCTCGA 59.248 57.895 0.00 0.00 0.00 4.04
574 584 1.966451 GCTGGGTGGTTTGGTCTCG 60.966 63.158 0.00 0.00 0.00 4.04
575 585 1.603739 GGCTGGGTGGTTTGGTCTC 60.604 63.158 0.00 0.00 0.00 3.36
576 586 2.520968 GGCTGGGTGGTTTGGTCT 59.479 61.111 0.00 0.00 0.00 3.85
577 587 2.600470 GGGCTGGGTGGTTTGGTC 60.600 66.667 0.00 0.00 0.00 4.02
578 588 4.233558 GGGGCTGGGTGGTTTGGT 62.234 66.667 0.00 0.00 0.00 3.67
579 589 3.544503 ATGGGGCTGGGTGGTTTGG 62.545 63.158 0.00 0.00 0.00 3.28
580 590 1.984026 GATGGGGCTGGGTGGTTTG 60.984 63.158 0.00 0.00 0.00 2.93
581 591 2.445155 GATGGGGCTGGGTGGTTT 59.555 61.111 0.00 0.00 0.00 3.27
582 592 3.672503 GGATGGGGCTGGGTGGTT 61.673 66.667 0.00 0.00 0.00 3.67
584 594 3.671410 TTGGATGGGGCTGGGTGG 61.671 66.667 0.00 0.00 0.00 4.61
585 595 2.362889 GTTGGATGGGGCTGGGTG 60.363 66.667 0.00 0.00 0.00 4.61
586 596 3.672503 GGTTGGATGGGGCTGGGT 61.673 66.667 0.00 0.00 0.00 4.51
587 597 4.463788 GGGTTGGATGGGGCTGGG 62.464 72.222 0.00 0.00 0.00 4.45
588 598 2.534594 AATGGGTTGGATGGGGCTGG 62.535 60.000 0.00 0.00 0.00 4.85
589 599 0.618393 AAATGGGTTGGATGGGGCTG 60.618 55.000 0.00 0.00 0.00 4.85
590 600 0.118952 AAAATGGGTTGGATGGGGCT 59.881 50.000 0.00 0.00 0.00 5.19
591 601 0.991146 AAAAATGGGTTGGATGGGGC 59.009 50.000 0.00 0.00 0.00 5.80
592 602 2.264455 TGAAAAATGGGTTGGATGGGG 58.736 47.619 0.00 0.00 0.00 4.96
593 603 4.573021 AATGAAAAATGGGTTGGATGGG 57.427 40.909 0.00 0.00 0.00 4.00
594 604 6.543100 CCATAAATGAAAAATGGGTTGGATGG 59.457 38.462 0.00 0.00 37.17 3.51
595 605 7.337167 TCCATAAATGAAAAATGGGTTGGATG 58.663 34.615 1.02 0.00 40.53 3.51
596 606 7.507797 TCCATAAATGAAAAATGGGTTGGAT 57.492 32.000 1.02 0.00 40.53 3.41
597 607 6.942163 TCCATAAATGAAAAATGGGTTGGA 57.058 33.333 1.02 0.00 40.53 3.53
600 610 9.804977 TTTCAATCCATAAATGAAAAATGGGTT 57.195 25.926 1.02 0.00 43.36 4.11
601 611 9.230122 GTTTCAATCCATAAATGAAAAATGGGT 57.770 29.630 2.12 0.00 42.70 4.51
602 612 9.452287 AGTTTCAATCCATAAATGAAAAATGGG 57.548 29.630 2.12 0.00 42.70 4.00
604 614 9.763465 GCAGTTTCAATCCATAAATGAAAAATG 57.237 29.630 2.12 5.90 42.70 2.32
605 615 9.504708 TGCAGTTTCAATCCATAAATGAAAAAT 57.495 25.926 2.12 0.00 42.70 1.82
606 616 8.899427 TGCAGTTTCAATCCATAAATGAAAAA 57.101 26.923 2.12 0.00 42.70 1.94
607 617 8.149647 ACTGCAGTTTCAATCCATAAATGAAAA 58.850 29.630 15.25 0.00 42.70 2.29
608 618 7.669427 ACTGCAGTTTCAATCCATAAATGAAA 58.331 30.769 15.25 0.00 39.89 2.69
609 619 7.230849 ACTGCAGTTTCAATCCATAAATGAA 57.769 32.000 15.25 0.00 0.00 2.57
610 620 6.839124 ACTGCAGTTTCAATCCATAAATGA 57.161 33.333 15.25 0.00 0.00 2.57
611 621 7.599621 TCAAACTGCAGTTTCAATCCATAAATG 59.400 33.333 35.97 22.79 45.54 2.32
612 622 7.669427 TCAAACTGCAGTTTCAATCCATAAAT 58.331 30.769 35.97 13.13 45.54 1.40
613 623 7.048629 TCAAACTGCAGTTTCAATCCATAAA 57.951 32.000 35.97 12.60 45.54 1.40
614 624 6.647334 TCAAACTGCAGTTTCAATCCATAA 57.353 33.333 35.97 13.90 45.54 1.90
615 625 6.647334 TTCAAACTGCAGTTTCAATCCATA 57.353 33.333 35.97 10.21 45.54 2.74
616 626 5.534207 TTCAAACTGCAGTTTCAATCCAT 57.466 34.783 35.97 15.27 45.54 3.41
617 627 4.998671 TTCAAACTGCAGTTTCAATCCA 57.001 36.364 35.97 11.32 45.54 3.41
618 628 5.276348 CGTTTTCAAACTGCAGTTTCAATCC 60.276 40.000 35.97 22.91 45.54 3.01
619 629 5.717251 CGTTTTCAAACTGCAGTTTCAATC 58.283 37.500 35.97 26.52 45.54 2.67
620 630 4.032786 GCGTTTTCAAACTGCAGTTTCAAT 59.967 37.500 35.97 17.81 45.54 2.57
621 631 3.366422 GCGTTTTCAAACTGCAGTTTCAA 59.634 39.130 35.97 29.62 45.54 2.69
622 632 2.920490 GCGTTTTCAAACTGCAGTTTCA 59.080 40.909 35.97 25.71 45.54 2.69
623 633 2.035756 CGCGTTTTCAAACTGCAGTTTC 60.036 45.455 35.97 24.60 45.54 2.78
625 635 1.544686 CGCGTTTTCAAACTGCAGTT 58.455 45.000 26.36 26.36 40.50 3.16
626 636 0.248458 CCGCGTTTTCAAACTGCAGT 60.248 50.000 15.25 15.25 37.87 4.40
627 637 0.028770 TCCGCGTTTTCAAACTGCAG 59.971 50.000 13.48 13.48 37.87 4.41
628 638 0.248296 GTCCGCGTTTTCAAACTGCA 60.248 50.000 4.92 0.00 37.87 4.41
629 639 0.248296 TGTCCGCGTTTTCAAACTGC 60.248 50.000 4.92 5.35 36.77 4.40
630 640 1.202087 TGTGTCCGCGTTTTCAAACTG 60.202 47.619 4.92 0.00 36.77 3.16
631 641 1.088306 TGTGTCCGCGTTTTCAAACT 58.912 45.000 4.92 0.00 36.77 2.66
632 642 1.843753 CTTGTGTCCGCGTTTTCAAAC 59.156 47.619 4.92 0.00 35.59 2.93
633 643 1.738350 TCTTGTGTCCGCGTTTTCAAA 59.262 42.857 4.92 0.00 0.00 2.69
634 644 1.370609 TCTTGTGTCCGCGTTTTCAA 58.629 45.000 4.92 4.69 0.00 2.69
635 645 1.329292 CTTCTTGTGTCCGCGTTTTCA 59.671 47.619 4.92 0.00 0.00 2.69
636 646 1.920272 GCTTCTTGTGTCCGCGTTTTC 60.920 52.381 4.92 0.00 0.00 2.29
637 647 0.028902 GCTTCTTGTGTCCGCGTTTT 59.971 50.000 4.92 0.00 0.00 2.43
638 648 0.814010 AGCTTCTTGTGTCCGCGTTT 60.814 50.000 4.92 0.00 0.00 3.60
639 649 1.227556 AGCTTCTTGTGTCCGCGTT 60.228 52.632 4.92 0.00 0.00 4.84
640 650 1.956170 CAGCTTCTTGTGTCCGCGT 60.956 57.895 4.92 0.00 0.00 6.01
641 651 2.671177 CCAGCTTCTTGTGTCCGCG 61.671 63.158 0.00 0.00 0.00 6.46
642 652 1.598130 ACCAGCTTCTTGTGTCCGC 60.598 57.895 0.00 0.00 0.00 5.54
643 653 0.532862 ACACCAGCTTCTTGTGTCCG 60.533 55.000 3.03 0.00 35.87 4.79
644 654 0.947244 CACACCAGCTTCTTGTGTCC 59.053 55.000 9.90 0.00 38.10 4.02
645 655 0.308993 GCACACCAGCTTCTTGTGTC 59.691 55.000 16.61 8.48 38.10 3.67
646 656 0.107017 AGCACACCAGCTTCTTGTGT 60.107 50.000 16.61 10.39 43.70 3.72
647 657 0.309922 CAGCACACCAGCTTCTTGTG 59.690 55.000 12.75 12.75 43.70 3.33
648 658 0.820891 CCAGCACACCAGCTTCTTGT 60.821 55.000 0.00 0.00 43.70 3.16
649 659 0.535780 TCCAGCACACCAGCTTCTTG 60.536 55.000 0.00 0.00 43.70 3.02
650 660 0.536006 GTCCAGCACACCAGCTTCTT 60.536 55.000 0.00 0.00 43.70 2.52
651 661 1.072159 GTCCAGCACACCAGCTTCT 59.928 57.895 0.00 0.00 43.70 2.85
652 662 0.819259 TTGTCCAGCACACCAGCTTC 60.819 55.000 0.00 0.00 43.70 3.86
653 663 1.103398 GTTGTCCAGCACACCAGCTT 61.103 55.000 0.00 0.00 43.70 3.74
655 665 2.555547 GGTTGTCCAGCACACCAGC 61.556 63.158 0.00 0.00 33.41 4.85
656 666 1.898574 GGGTTGTCCAGCACACCAG 60.899 63.158 0.00 0.00 33.41 4.00
657 667 2.194597 GGGTTGTCCAGCACACCA 59.805 61.111 0.00 0.00 33.41 4.17
658 668 2.194597 TGGGTTGTCCAGCACACC 59.805 61.111 0.00 0.00 41.46 4.16
667 677 2.033448 TCACGGGCATGGGTTGTC 59.967 61.111 0.00 0.00 0.00 3.18
668 678 2.034066 CTCACGGGCATGGGTTGT 59.966 61.111 0.00 0.00 0.00 3.32
669 679 2.556840 ATCCTCACGGGCATGGGTTG 62.557 60.000 0.00 0.00 34.39 3.77
670 680 2.308722 ATCCTCACGGGCATGGGTT 61.309 57.895 0.00 0.00 34.39 4.11
671 681 2.692368 ATCCTCACGGGCATGGGT 60.692 61.111 0.00 0.00 34.39 4.51
672 682 2.203252 CATCCTCACGGGCATGGG 60.203 66.667 0.00 0.00 34.39 4.00
673 683 2.903855 GCATCCTCACGGGCATGG 60.904 66.667 0.00 0.00 34.39 3.66
703 713 0.249398 GATCAACTACCCACAGCGGT 59.751 55.000 0.00 0.00 40.13 5.68
704 714 0.537188 AGATCAACTACCCACAGCGG 59.463 55.000 0.00 0.00 0.00 5.52
705 715 2.271800 GAAGATCAACTACCCACAGCG 58.728 52.381 0.00 0.00 0.00 5.18
706 716 2.271800 CGAAGATCAACTACCCACAGC 58.728 52.381 0.00 0.00 0.00 4.40
707 717 2.893637 CCGAAGATCAACTACCCACAG 58.106 52.381 0.00 0.00 0.00 3.66
708 718 1.066430 GCCGAAGATCAACTACCCACA 60.066 52.381 0.00 0.00 0.00 4.17
709 719 1.207329 AGCCGAAGATCAACTACCCAC 59.793 52.381 0.00 0.00 0.00 4.61
710 720 1.568504 AGCCGAAGATCAACTACCCA 58.431 50.000 0.00 0.00 0.00 4.51
711 721 2.093658 TGAAGCCGAAGATCAACTACCC 60.094 50.000 0.00 0.00 0.00 3.69
712 722 3.247006 TGAAGCCGAAGATCAACTACC 57.753 47.619 0.00 0.00 0.00 3.18
713 723 4.691216 ACTTTGAAGCCGAAGATCAACTAC 59.309 41.667 0.00 0.00 37.26 2.73
714 724 4.894784 ACTTTGAAGCCGAAGATCAACTA 58.105 39.130 0.00 0.00 37.26 2.24
715 725 3.744660 ACTTTGAAGCCGAAGATCAACT 58.255 40.909 0.00 0.00 37.26 3.16
716 726 4.436183 GCTACTTTGAAGCCGAAGATCAAC 60.436 45.833 0.00 0.00 37.26 3.18
717 727 3.684788 GCTACTTTGAAGCCGAAGATCAA 59.315 43.478 0.00 0.00 37.26 2.57
718 728 3.262420 GCTACTTTGAAGCCGAAGATCA 58.738 45.455 0.00 0.00 37.26 2.92
721 731 2.612972 CCTGCTACTTTGAAGCCGAAGA 60.613 50.000 0.00 0.00 39.30 2.87
722 732 1.734465 CCTGCTACTTTGAAGCCGAAG 59.266 52.381 0.00 0.00 39.30 3.79
723 733 1.071699 ACCTGCTACTTTGAAGCCGAA 59.928 47.619 0.00 0.00 39.30 4.30
725 735 1.079503 GACCTGCTACTTTGAAGCCG 58.920 55.000 0.00 0.00 39.30 5.52
727 737 3.142174 ACAAGACCTGCTACTTTGAAGC 58.858 45.455 0.00 0.00 40.50 3.86
728 738 4.450419 CAGACAAGACCTGCTACTTTGAAG 59.550 45.833 0.00 0.00 0.00 3.02
729 739 4.100963 TCAGACAAGACCTGCTACTTTGAA 59.899 41.667 0.00 0.00 0.00 2.69
730 740 3.641436 TCAGACAAGACCTGCTACTTTGA 59.359 43.478 0.00 0.00 0.00 2.69
731 741 3.995199 TCAGACAAGACCTGCTACTTTG 58.005 45.455 0.00 0.00 0.00 2.77
733 743 3.580458 ACATCAGACAAGACCTGCTACTT 59.420 43.478 0.00 0.00 0.00 2.24
735 745 3.257393 CACATCAGACAAGACCTGCTAC 58.743 50.000 0.00 0.00 0.00 3.58
737 747 1.696336 ACACATCAGACAAGACCTGCT 59.304 47.619 0.00 0.00 0.00 4.24
739 749 4.527509 ACTACACATCAGACAAGACCTG 57.472 45.455 0.00 0.00 0.00 4.00
741 751 4.142138 CCCTACTACACATCAGACAAGACC 60.142 50.000 0.00 0.00 0.00 3.85
742 752 4.463186 ACCCTACTACACATCAGACAAGAC 59.537 45.833 0.00 0.00 0.00 3.01
744 754 4.438880 CGACCCTACTACACATCAGACAAG 60.439 50.000 0.00 0.00 0.00 3.16
745 755 3.442625 CGACCCTACTACACATCAGACAA 59.557 47.826 0.00 0.00 0.00 3.18
747 757 2.358267 CCGACCCTACTACACATCAGAC 59.642 54.545 0.00 0.00 0.00 3.51
748 758 2.025605 ACCGACCCTACTACACATCAGA 60.026 50.000 0.00 0.00 0.00 3.27
749 759 2.099263 CACCGACCCTACTACACATCAG 59.901 54.545 0.00 0.00 0.00 2.90
752 762 2.291411 ACTCACCGACCCTACTACACAT 60.291 50.000 0.00 0.00 0.00 3.21
754 764 1.742268 GACTCACCGACCCTACTACAC 59.258 57.143 0.00 0.00 0.00 2.90
756 766 1.012841 CGACTCACCGACCCTACTAC 58.987 60.000 0.00 0.00 0.00 2.73
757 767 0.107508 CCGACTCACCGACCCTACTA 60.108 60.000 0.00 0.00 0.00 1.82
759 769 1.375098 CTCCGACTCACCGACCCTAC 61.375 65.000 0.00 0.00 0.00 3.18
760 770 1.077930 CTCCGACTCACCGACCCTA 60.078 63.158 0.00 0.00 0.00 3.53
762 772 3.450115 CCTCCGACTCACCGACCC 61.450 72.222 0.00 0.00 0.00 4.46
763 773 4.131088 GCCTCCGACTCACCGACC 62.131 72.222 0.00 0.00 0.00 4.79
764 774 4.477975 CGCCTCCGACTCACCGAC 62.478 72.222 0.00 0.00 36.29 4.79
790 800 4.641645 CCTGGTGCCCACGCTTGA 62.642 66.667 0.00 0.00 35.36 3.02
791 801 4.641645 TCCTGGTGCCCACGCTTG 62.642 66.667 0.00 0.00 35.36 4.01
800 810 3.195698 GAATCGGCGTCCTGGTGC 61.196 66.667 6.85 5.33 0.00 5.01
801 811 2.511600 GGAATCGGCGTCCTGGTG 60.512 66.667 6.85 0.00 31.94 4.17
802 812 4.143333 CGGAATCGGCGTCCTGGT 62.143 66.667 13.75 0.00 32.53 4.00
804 814 2.278857 CTCGGAATCGGCGTCCTG 60.279 66.667 13.75 8.10 36.95 3.86
805 815 1.601419 TTTCTCGGAATCGGCGTCCT 61.601 55.000 13.75 0.00 36.95 3.85
807 817 0.179145 TCTTTCTCGGAATCGGCGTC 60.179 55.000 6.85 0.00 36.95 5.19
808 818 0.460311 ATCTTTCTCGGAATCGGCGT 59.540 50.000 6.85 0.00 36.95 5.68
809 819 1.132588 GATCTTTCTCGGAATCGGCG 58.867 55.000 0.00 0.00 36.95 6.46
812 822 5.803020 AAAAAGGATCTTTCTCGGAATCG 57.197 39.130 0.00 0.00 37.82 3.34
855 1008 2.109774 CTCTCTCTCTCTTGTGGCCAT 58.890 52.381 9.72 0.00 0.00 4.40
856 1009 1.076187 TCTCTCTCTCTCTTGTGGCCA 59.924 52.381 0.00 0.00 0.00 5.36
857 1010 1.750778 CTCTCTCTCTCTCTTGTGGCC 59.249 57.143 0.00 0.00 0.00 5.36
858 1011 2.446435 ACTCTCTCTCTCTCTTGTGGC 58.554 52.381 0.00 0.00 0.00 5.01
860 1013 4.572389 GCTCTACTCTCTCTCTCTCTTGTG 59.428 50.000 0.00 0.00 0.00 3.33
861 1014 4.225042 TGCTCTACTCTCTCTCTCTCTTGT 59.775 45.833 0.00 0.00 0.00 3.16
862 1015 4.769688 TGCTCTACTCTCTCTCTCTCTTG 58.230 47.826 0.00 0.00 0.00 3.02
863 1016 4.716784 TCTGCTCTACTCTCTCTCTCTCTT 59.283 45.833 0.00 0.00 0.00 2.85
864 1017 4.290093 TCTGCTCTACTCTCTCTCTCTCT 58.710 47.826 0.00 0.00 0.00 3.10
865 1018 4.100189 ACTCTGCTCTACTCTCTCTCTCTC 59.900 50.000 0.00 0.00 0.00 3.20
866 1019 4.033709 ACTCTGCTCTACTCTCTCTCTCT 58.966 47.826 0.00 0.00 0.00 3.10
867 1020 4.408182 ACTCTGCTCTACTCTCTCTCTC 57.592 50.000 0.00 0.00 0.00 3.20
868 1021 5.208890 TCTACTCTGCTCTACTCTCTCTCT 58.791 45.833 0.00 0.00 0.00 3.10
869 1022 5.531122 TCTACTCTGCTCTACTCTCTCTC 57.469 47.826 0.00 0.00 0.00 3.20
870 1023 5.661312 TCTTCTACTCTGCTCTACTCTCTCT 59.339 44.000 0.00 0.00 0.00 3.10
871 1024 5.914033 TCTTCTACTCTGCTCTACTCTCTC 58.086 45.833 0.00 0.00 0.00 3.20
872 1025 5.950544 TCTTCTACTCTGCTCTACTCTCT 57.049 43.478 0.00 0.00 0.00 3.10
873 1026 6.995511 TTTCTTCTACTCTGCTCTACTCTC 57.004 41.667 0.00 0.00 0.00 3.20
874 1027 7.172342 TCTTTTCTTCTACTCTGCTCTACTCT 58.828 38.462 0.00 0.00 0.00 3.24
875 1028 7.385778 TCTTTTCTTCTACTCTGCTCTACTC 57.614 40.000 0.00 0.00 0.00 2.59
876 1029 7.954666 ATCTTTTCTTCTACTCTGCTCTACT 57.045 36.000 0.00 0.00 0.00 2.57
877 1030 8.899771 AGTATCTTTTCTTCTACTCTGCTCTAC 58.100 37.037 0.00 0.00 0.00 2.59
878 1031 8.898761 CAGTATCTTTTCTTCTACTCTGCTCTA 58.101 37.037 0.00 0.00 0.00 2.43
879 1032 7.147915 CCAGTATCTTTTCTTCTACTCTGCTCT 60.148 40.741 0.00 0.00 0.00 4.09
880 1033 6.978080 CCAGTATCTTTTCTTCTACTCTGCTC 59.022 42.308 0.00 0.00 0.00 4.26
881 1034 6.127196 CCCAGTATCTTTTCTTCTACTCTGCT 60.127 42.308 0.00 0.00 0.00 4.24
882 1035 6.045955 CCCAGTATCTTTTCTTCTACTCTGC 58.954 44.000 0.00 0.00 0.00 4.26
883 1036 6.045955 GCCCAGTATCTTTTCTTCTACTCTG 58.954 44.000 0.00 0.00 0.00 3.35
884 1037 5.129650 GGCCCAGTATCTTTTCTTCTACTCT 59.870 44.000 0.00 0.00 0.00 3.24
885 1038 5.104900 TGGCCCAGTATCTTTTCTTCTACTC 60.105 44.000 0.00 0.00 0.00 2.59
886 1039 4.783227 TGGCCCAGTATCTTTTCTTCTACT 59.217 41.667 0.00 0.00 0.00 2.57
887 1040 4.876679 GTGGCCCAGTATCTTTTCTTCTAC 59.123 45.833 0.00 0.00 0.00 2.59
888 1041 4.080526 GGTGGCCCAGTATCTTTTCTTCTA 60.081 45.833 0.00 0.00 0.00 2.10
889 1042 3.308473 GGTGGCCCAGTATCTTTTCTTCT 60.308 47.826 0.00 0.00 0.00 2.85
890 1043 3.017442 GGTGGCCCAGTATCTTTTCTTC 58.983 50.000 0.00 0.00 0.00 2.87
891 1044 2.618045 CGGTGGCCCAGTATCTTTTCTT 60.618 50.000 0.00 0.00 0.00 2.52
892 1045 1.065418 CGGTGGCCCAGTATCTTTTCT 60.065 52.381 0.00 0.00 0.00 2.52
893 1046 1.379527 CGGTGGCCCAGTATCTTTTC 58.620 55.000 0.00 0.00 0.00 2.29
894 1047 0.679960 GCGGTGGCCCAGTATCTTTT 60.680 55.000 0.00 0.00 0.00 2.27
895 1048 1.077716 GCGGTGGCCCAGTATCTTT 60.078 57.895 0.00 0.00 0.00 2.52
896 1049 2.590092 GCGGTGGCCCAGTATCTT 59.410 61.111 0.00 0.00 0.00 2.40
916 1069 1.627297 AATGGGCTTCTCTCCGTCCC 61.627 60.000 0.00 0.00 37.49 4.46
924 1077 3.628032 GGTGCTACTAAAATGGGCTTCTC 59.372 47.826 0.00 0.00 0.00 2.87
939 1092 0.537371 AAACAGGCCTGTGGTGCTAC 60.537 55.000 38.35 0.00 44.13 3.58
942 1095 0.811281 GATAAACAGGCCTGTGGTGC 59.189 55.000 38.35 23.39 44.13 5.01
945 1098 1.755179 CAGGATAAACAGGCCTGTGG 58.245 55.000 38.35 13.64 44.13 4.17
988 1151 5.135876 TGGATTGGATTGGATTGGAAGGATA 59.864 40.000 0.00 0.00 0.00 2.59
989 1152 4.078454 TGGATTGGATTGGATTGGAAGGAT 60.078 41.667 0.00 0.00 0.00 3.24
990 1153 3.271755 TGGATTGGATTGGATTGGAAGGA 59.728 43.478 0.00 0.00 0.00 3.36
991 1154 3.645434 TGGATTGGATTGGATTGGAAGG 58.355 45.455 0.00 0.00 0.00 3.46
992 1155 5.221581 GGATTGGATTGGATTGGATTGGAAG 60.222 44.000 0.00 0.00 0.00 3.46
994 1157 4.225573 GGATTGGATTGGATTGGATTGGA 58.774 43.478 0.00 0.00 0.00 3.53
995 1158 3.325716 GGGATTGGATTGGATTGGATTGG 59.674 47.826 0.00 0.00 0.00 3.16
996 1159 3.968649 TGGGATTGGATTGGATTGGATTG 59.031 43.478 0.00 0.00 0.00 2.67
1002 1171 2.318822 AGGGTTGGGATTGGATTGGATT 59.681 45.455 0.00 0.00 0.00 3.01
1052 1251 0.594110 GAGGATAGGGTTCGAGCGAG 59.406 60.000 0.00 0.00 0.00 5.03
1054 1253 0.594110 GAGAGGATAGGGTTCGAGCG 59.406 60.000 0.00 0.00 0.00 5.03
1099 1303 3.989787 GGTTTTGGGTGCCTGCGG 61.990 66.667 0.00 0.00 0.00 5.69
1100 1304 3.989787 GGGTTTTGGGTGCCTGCG 61.990 66.667 0.00 0.00 0.00 5.18
1105 1309 2.989881 GCGCTAGGGTTTTGGGTGC 61.990 63.158 8.77 0.00 0.00 5.01
1107 1311 2.035155 GGCGCTAGGGTTTTGGGT 59.965 61.111 7.64 0.00 0.00 4.51
1127 1331 2.105128 AGAGAAAGATCCGGCGCG 59.895 61.111 0.00 0.00 0.00 6.86
1178 1382 2.042569 ACATGGATGGATGGATGGATGG 59.957 50.000 0.00 0.00 0.00 3.51
1233 1441 2.956333 AGCTAGAAACCAACCAACCAAC 59.044 45.455 0.00 0.00 0.00 3.77
1252 1460 6.860790 AACCCTAGATTAGATTAGCCTAGC 57.139 41.667 0.00 0.00 0.00 3.42
1253 1461 8.196378 ACAAACCCTAGATTAGATTAGCCTAG 57.804 38.462 0.00 0.00 0.00 3.02
1254 1462 8.562949 AACAAACCCTAGATTAGATTAGCCTA 57.437 34.615 0.00 0.00 0.00 3.93
1255 1463 7.453141 AACAAACCCTAGATTAGATTAGCCT 57.547 36.000 0.00 0.00 0.00 4.58
1256 1464 7.773690 TCAAACAAACCCTAGATTAGATTAGCC 59.226 37.037 0.00 0.00 0.00 3.93
1262 1470 7.617225 TCGATTCAAACAAACCCTAGATTAGA 58.383 34.615 0.00 0.00 0.00 2.10
1286 1494 5.576337 TTGGATTCGATTCGATTCGATTC 57.424 39.130 28.82 28.82 46.55 2.52
1290 1498 3.740832 TGGATTGGATTCGATTCGATTCG 59.259 43.478 20.58 20.58 37.20 3.34
1291 1499 5.673337 TTGGATTGGATTCGATTCGATTC 57.327 39.130 18.14 18.14 35.23 2.52
1292 1500 5.106948 CGATTGGATTGGATTCGATTCGATT 60.107 40.000 9.96 6.37 35.23 3.34
1293 1501 4.389992 CGATTGGATTGGATTCGATTCGAT 59.610 41.667 9.96 0.25 35.23 3.59
1294 1502 3.740832 CGATTGGATTGGATTCGATTCGA 59.259 43.478 4.29 4.29 32.51 3.71
1295 1503 3.740832 TCGATTGGATTGGATTCGATTCG 59.259 43.478 0.00 0.00 34.24 3.34
1296 1504 5.673337 TTCGATTGGATTGGATTCGATTC 57.327 39.130 0.00 0.00 38.47 2.52
1301 1509 5.973565 GTGTCAATTCGATTGGATTGGATTC 59.026 40.000 13.22 4.09 40.61 2.52
1329 1537 4.104383 TCCTGAATGAAAACCAAGCTCT 57.896 40.909 0.00 0.00 0.00 4.09
1330 1538 4.381292 CCATCCTGAATGAAAACCAAGCTC 60.381 45.833 0.00 0.00 37.59 4.09
1331 1539 3.512724 CCATCCTGAATGAAAACCAAGCT 59.487 43.478 0.00 0.00 37.59 3.74
1332 1540 3.368739 CCCATCCTGAATGAAAACCAAGC 60.369 47.826 0.00 0.00 37.59 4.01
1333 1541 4.088634 TCCCATCCTGAATGAAAACCAAG 58.911 43.478 0.00 0.00 37.59 3.61
1334 1542 4.088634 CTCCCATCCTGAATGAAAACCAA 58.911 43.478 0.00 0.00 37.59 3.67
1667 2289 1.425428 GTCGATTTTCGCAGCAGGG 59.575 57.895 0.00 0.00 40.21 4.45
1717 2380 6.294361 ACATTGACAGGCTACAAGTATGTA 57.706 37.500 10.94 0.00 41.05 2.29
1721 2384 6.526526 TGTTTACATTGACAGGCTACAAGTA 58.473 36.000 10.94 10.07 0.00 2.24
1728 2391 7.448469 AGTTAGATTTGTTTACATTGACAGGCT 59.552 33.333 0.00 0.00 0.00 4.58
1729 2392 7.538678 CAGTTAGATTTGTTTACATTGACAGGC 59.461 37.037 0.00 0.00 0.00 4.85
1730 2393 8.567948 ACAGTTAGATTTGTTTACATTGACAGG 58.432 33.333 0.00 0.00 0.00 4.00
1731 2394 9.950680 AACAGTTAGATTTGTTTACATTGACAG 57.049 29.630 0.00 0.00 34.00 3.51
1764 2429 7.277319 GGGTCGAAACCTAATTTTCTACACTAG 59.723 40.741 0.32 0.00 45.66 2.57
1778 2443 5.813672 CGAAATGAATTAGGGTCGAAACCTA 59.186 40.000 11.92 11.92 45.66 3.08
1849 2514 1.576356 TTGGTTGGCATGTTTTTCGC 58.424 45.000 0.00 0.00 0.00 4.70
1851 2516 7.020914 TGTTAATTTGGTTGGCATGTTTTTC 57.979 32.000 0.00 0.00 0.00 2.29
1857 2554 5.782047 TCTCTTGTTAATTTGGTTGGCATG 58.218 37.500 0.00 0.00 0.00 4.06
2187 3027 3.186001 CACAGCAAGCAAAACAACAAACA 59.814 39.130 0.00 0.00 0.00 2.83
3484 4458 9.459640 GGTAGTAATGGAAAACAGAAGAAAAAC 57.540 33.333 0.00 0.00 0.00 2.43
4099 5088 4.665833 TTTTCGGTTCTTCTCTGACTCA 57.334 40.909 0.00 0.00 0.00 3.41
4839 5956 3.304123 CCGACGAAACAAAAGTTATGGCA 60.304 43.478 0.00 0.00 0.00 4.92
4926 6057 5.071788 ACAATCTTCCTTGTCACTCCACTTA 59.928 40.000 0.00 0.00 34.26 2.24
5278 6440 8.046294 TCTCTCAGACTAAATAACAGACAGAC 57.954 38.462 0.00 0.00 0.00 3.51
5279 6441 8.681806 CATCTCTCAGACTAAATAACAGACAGA 58.318 37.037 0.00 0.00 0.00 3.41
5280 6442 8.465999 ACATCTCTCAGACTAAATAACAGACAG 58.534 37.037 0.00 0.00 0.00 3.51
5281 6443 8.354711 ACATCTCTCAGACTAAATAACAGACA 57.645 34.615 0.00 0.00 0.00 3.41
5517 6708 2.662700 CAGCAGCAGAAGCAGAAAAAG 58.337 47.619 0.00 0.00 45.49 2.27
5518 6709 1.269413 GCAGCAGCAGAAGCAGAAAAA 60.269 47.619 0.00 0.00 45.49 1.94
5519 6710 0.313043 GCAGCAGCAGAAGCAGAAAA 59.687 50.000 0.00 0.00 45.49 2.29
5520 6711 1.954528 GCAGCAGCAGAAGCAGAAA 59.045 52.632 0.00 0.00 45.49 2.52
5521 6712 3.664495 GCAGCAGCAGAAGCAGAA 58.336 55.556 0.00 0.00 45.49 3.02
5772 7137 4.687483 ACGTTTAAGGATACACAAGAACGG 59.313 41.667 9.60 0.00 41.41 4.44
5773 7138 5.164022 GGACGTTTAAGGATACACAAGAACG 60.164 44.000 0.00 0.00 41.41 3.95
5774 7139 5.164022 CGGACGTTTAAGGATACACAAGAAC 60.164 44.000 0.00 0.00 41.41 3.01
5775 7140 4.925054 CGGACGTTTAAGGATACACAAGAA 59.075 41.667 0.00 0.00 41.41 2.52
5915 7340 5.308825 ACACTTGAGGACTTGTATTCCTTG 58.691 41.667 0.00 0.00 44.03 3.61
6022 7482 1.327460 CACCGAGTAATCACAATGCCG 59.673 52.381 0.00 0.00 0.00 5.69
6023 7483 1.064060 GCACCGAGTAATCACAATGCC 59.936 52.381 0.00 0.00 0.00 4.40
6024 7484 1.737236 TGCACCGAGTAATCACAATGC 59.263 47.619 0.00 0.00 0.00 3.56
6082 7542 3.025262 GGTCGGAGGTCACTTAGAGAAT 58.975 50.000 0.00 0.00 0.00 2.40
6083 7543 2.444421 GGTCGGAGGTCACTTAGAGAA 58.556 52.381 0.00 0.00 0.00 2.87
6084 7544 1.340795 GGGTCGGAGGTCACTTAGAGA 60.341 57.143 0.00 0.00 0.00 3.10
6104 7564 1.860950 CGAACACCTGACACTCAACAG 59.139 52.381 0.00 0.00 0.00 3.16
6132 7592 1.130613 GTCGCGTCACATCAAGCAC 59.869 57.895 5.77 0.00 0.00 4.40
6172 7632 1.371467 TGATGTGACCCAACCCTGAT 58.629 50.000 0.00 0.00 0.00 2.90
6244 7714 2.066262 CTATGTGTGTGACAACCCGTC 58.934 52.381 0.00 0.00 45.61 4.79
6260 7730 5.353678 CCTTTGCTTCCAGAAGAGAACTATG 59.646 44.000 11.57 0.00 40.79 2.23
6288 7758 3.967080 GTCGACAACGGTTATGACTTC 57.033 47.619 11.55 0.00 40.21 3.01
6392 7872 6.515696 GCCTTATTATCATGGGCAGAAAACTC 60.516 42.308 2.43 0.00 42.08 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.