Multiple sequence alignment - TraesCS1B01G476700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G476700 chr1B 100.000 7184 0 0 1 7184 685368070 685360887 0.000000e+00 13267.0
1 TraesCS1B01G476700 chr1B 82.796 558 90 3 1987 2544 49933321 49933872 1.800000e-135 494.0
2 TraesCS1B01G476700 chr1B 95.706 163 7 0 3960 4122 136440156 136439994 5.530000e-66 263.0
3 TraesCS1B01G476700 chr1D 95.081 3151 101 14 835 3963 493210796 493213914 0.000000e+00 4911.0
4 TraesCS1B01G476700 chr1D 92.430 1387 58 22 4887 6238 493220795 493222169 0.000000e+00 1936.0
5 TraesCS1B01G476700 chr1D 84.971 865 83 30 1 833 493209887 493210736 0.000000e+00 833.0
6 TraesCS1B01G476700 chr1D 83.513 558 86 3 1987 2544 32479183 32479734 3.840000e-142 516.0
7 TraesCS1B01G476700 chr1D 93.151 292 13 2 4166 4451 493213938 493214228 8.620000e-114 422.0
8 TraesCS1B01G476700 chr1D 95.082 244 8 2 4516 4758 493217163 493217403 1.460000e-101 381.0
9 TraesCS1B01G476700 chr1D 93.714 175 10 1 5821 5994 9218205 9218379 1.990000e-65 261.0
10 TraesCS1B01G476700 chr1D 97.802 91 2 0 6247 6337 493222286 493222376 2.680000e-34 158.0
11 TraesCS1B01G476700 chr1D 93.478 92 3 3 4730 4819 493220709 493220799 4.520000e-27 134.0
12 TraesCS1B01G476700 chr1D 97.297 74 2 0 4448 4521 493214256 493214329 7.570000e-25 126.0
13 TraesCS1B01G476700 chr1D 87.069 116 3 6 6389 6493 493222485 493222599 3.520000e-23 121.0
14 TraesCS1B01G476700 chr5B 90.564 816 64 5 1831 2645 61369011 61369814 0.000000e+00 1068.0
15 TraesCS1B01G476700 chr5B 88.325 788 56 16 2637 3411 61369903 61370667 0.000000e+00 913.0
16 TraesCS1B01G476700 chr5B 87.794 680 62 7 4904 5565 61383048 61383724 0.000000e+00 776.0
17 TraesCS1B01G476700 chr5B 88.798 366 35 5 3598 3963 61381829 61382188 1.840000e-120 444.0
18 TraesCS1B01G476700 chr5B 88.818 313 27 3 4120 4426 61382185 61382495 1.890000e-100 377.0
19 TraesCS1B01G476700 chr5B 91.903 247 20 0 5986 6232 61384039 61384285 5.330000e-91 346.0
20 TraesCS1B01G476700 chr5B 90.909 99 4 1 5586 5679 61383863 61383961 2.100000e-25 128.0
21 TraesCS1B01G476700 chr5B 82.353 136 3 3 992 1106 61368264 61368399 1.650000e-16 99.0
22 TraesCS1B01G476700 chr5B 90.385 52 1 1 5774 5825 61383995 61384042 1.670000e-06 65.8
23 TraesCS1B01G476700 chr7B 93.607 657 40 2 6529 7184 622493659 622494314 0.000000e+00 979.0
24 TraesCS1B01G476700 chr7B 92.724 646 43 4 6542 7184 610821397 610820753 0.000000e+00 929.0
25 TraesCS1B01G476700 chr7B 94.350 177 8 2 3950 4125 411745266 411745441 3.300000e-68 270.0
26 TraesCS1B01G476700 chr7B 81.132 159 22 5 4120 4271 74112198 74112355 3.520000e-23 121.0
27 TraesCS1B01G476700 chr7B 79.630 162 18 10 4120 4271 84341153 84341309 1.280000e-17 102.0
28 TraesCS1B01G476700 chr4A 93.323 644 40 3 6542 7183 659464166 659464808 0.000000e+00 948.0
29 TraesCS1B01G476700 chr4A 93.323 644 40 3 6542 7183 659525822 659526464 0.000000e+00 948.0
30 TraesCS1B01G476700 chr4A 93.258 178 9 3 5821 5995 124819501 124819678 7.150000e-65 259.0
31 TraesCS1B01G476700 chr3B 93.045 647 41 3 6542 7184 23145845 23146491 0.000000e+00 942.0
32 TraesCS1B01G476700 chr3B 92.308 650 46 2 6539 7184 20554652 20555301 0.000000e+00 920.0
33 TraesCS1B01G476700 chr6B 93.034 646 37 6 6542 7184 95323722 95323082 0.000000e+00 937.0
34 TraesCS1B01G476700 chr6B 92.427 647 45 2 6542 7184 500595042 500595688 0.000000e+00 920.0
35 TraesCS1B01G476700 chr6B 80.255 157 21 7 4123 4271 392488632 392488478 7.620000e-20 110.0
36 TraesCS1B01G476700 chr2B 92.702 644 44 3 6542 7184 56780938 56780297 0.000000e+00 926.0
37 TraesCS1B01G476700 chr2B 84.211 741 89 11 1831 2562 663131365 663130644 0.000000e+00 695.0
38 TraesCS1B01G476700 chr2B 88.600 500 41 8 2806 3297 663130326 663129835 1.730000e-165 593.0
39 TraesCS1B01G476700 chr2B 75.937 1014 172 50 4483 5463 663128914 663127940 8.500000e-124 455.0
40 TraesCS1B01G476700 chr2B 81.481 162 16 10 4120 4271 501108150 501108307 3.520000e-23 121.0
41 TraesCS1B01G476700 chr2B 83.486 109 12 5 3857 3962 620624234 620624129 5.930000e-16 97.1
42 TraesCS1B01G476700 chr2D 83.755 751 94 10 1831 2572 556057886 556057155 0.000000e+00 686.0
43 TraesCS1B01G476700 chr2D 92.754 414 28 1 2886 3297 556056771 556056358 1.330000e-166 597.0
44 TraesCS1B01G476700 chr2D 76.453 998 161 42 4483 5463 556055369 556054429 2.350000e-129 473.0
45 TraesCS1B01G476700 chr2D 93.750 176 10 1 5820 5994 609886959 609886784 5.530000e-66 263.0
46 TraesCS1B01G476700 chr2D 95.679 162 7 0 3960 4121 517572633 517572472 1.990000e-65 261.0
47 TraesCS1B01G476700 chr2D 92.737 179 10 3 3956 4134 56541160 56540985 9.250000e-64 255.0
48 TraesCS1B01G476700 chr2D 82.828 99 15 2 3857 3954 70525548 70525645 3.570000e-13 87.9
49 TraesCS1B01G476700 chr2A 83.531 759 89 13 1831 2572 695510822 695510083 0.000000e+00 676.0
50 TraesCS1B01G476700 chr2A 88.000 500 44 6 2806 3297 695509776 695509285 1.740000e-160 577.0
51 TraesCS1B01G476700 chr2A 76.553 998 161 43 4483 5463 695508312 695507371 5.040000e-131 479.0
52 TraesCS1B01G476700 chr2A 95.758 165 7 0 3957 4121 189020834 189020998 4.270000e-67 267.0
53 TraesCS1B01G476700 chr2A 93.258 178 9 3 5821 5995 469790032 469790209 7.150000e-65 259.0
54 TraesCS1B01G476700 chr2A 83.810 105 12 5 3860 3962 177658415 177658516 2.130000e-15 95.3
55 TraesCS1B01G476700 chr1A 82.437 558 92 4 1987 2544 31161555 31162106 3.900000e-132 483.0
56 TraesCS1B01G476700 chr1A 96.296 162 6 0 3960 4121 254349076 254348915 4.270000e-67 267.0
57 TraesCS1B01G476700 chr5D 95.322 171 8 0 3951 4121 334801286 334801456 9.180000e-69 272.0
58 TraesCS1B01G476700 chr5D 95.758 165 7 0 3957 4121 151671712 151671548 4.270000e-67 267.0
59 TraesCS1B01G476700 chr5D 94.643 168 8 1 5821 5987 42949557 42949724 7.150000e-65 259.0
60 TraesCS1B01G476700 chr5D 90.576 191 13 4 5801 5990 559625750 559625936 1.550000e-61 248.0
61 TraesCS1B01G476700 chr5D 82.653 98 15 2 3859 3955 517846687 517846783 1.280000e-12 86.1
62 TraesCS1B01G476700 chr4D 92.473 186 11 3 5820 6003 93336852 93336668 5.530000e-66 263.0
63 TraesCS1B01G476700 chr4D 85.542 83 8 4 3860 3940 21762242 21762322 4.620000e-12 84.2
64 TraesCS1B01G476700 chr4B 95.152 165 8 0 3959 4123 586317322 586317486 1.990000e-65 261.0
65 TraesCS1B01G476700 chr4B 82.178 101 16 2 3856 3956 242748406 242748504 1.280000e-12 86.1
66 TraesCS1B01G476700 chr7D 93.642 173 9 2 5820 5990 517805477 517805649 2.570000e-64 257.0
67 TraesCS1B01G476700 chr7D 82.857 105 12 6 3861 3962 34457345 34457244 9.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G476700 chr1B 685360887 685368070 7183 True 13267.000000 13267 100.000000 1 7184 1 chr1B.!!$R2 7183
1 TraesCS1B01G476700 chr1B 49933321 49933872 551 False 494.000000 494 82.796000 1987 2544 1 chr1B.!!$F1 557
2 TraesCS1B01G476700 chr1D 493209887 493222599 12712 False 1002.444444 4911 92.929000 1 6493 9 chr1D.!!$F3 6492
3 TraesCS1B01G476700 chr1D 32479183 32479734 551 False 516.000000 516 83.513000 1987 2544 1 chr1D.!!$F2 557
4 TraesCS1B01G476700 chr5B 61368264 61370667 2403 False 693.333333 1068 87.080667 992 3411 3 chr5B.!!$F1 2419
5 TraesCS1B01G476700 chr5B 61381829 61384285 2456 False 356.133333 776 89.767833 3598 6232 6 chr5B.!!$F2 2634
6 TraesCS1B01G476700 chr7B 622493659 622494314 655 False 979.000000 979 93.607000 6529 7184 1 chr7B.!!$F4 655
7 TraesCS1B01G476700 chr7B 610820753 610821397 644 True 929.000000 929 92.724000 6542 7184 1 chr7B.!!$R1 642
8 TraesCS1B01G476700 chr4A 659464166 659464808 642 False 948.000000 948 93.323000 6542 7183 1 chr4A.!!$F2 641
9 TraesCS1B01G476700 chr4A 659525822 659526464 642 False 948.000000 948 93.323000 6542 7183 1 chr4A.!!$F3 641
10 TraesCS1B01G476700 chr3B 23145845 23146491 646 False 942.000000 942 93.045000 6542 7184 1 chr3B.!!$F2 642
11 TraesCS1B01G476700 chr3B 20554652 20555301 649 False 920.000000 920 92.308000 6539 7184 1 chr3B.!!$F1 645
12 TraesCS1B01G476700 chr6B 95323082 95323722 640 True 937.000000 937 93.034000 6542 7184 1 chr6B.!!$R1 642
13 TraesCS1B01G476700 chr6B 500595042 500595688 646 False 920.000000 920 92.427000 6542 7184 1 chr6B.!!$F1 642
14 TraesCS1B01G476700 chr2B 56780297 56780938 641 True 926.000000 926 92.702000 6542 7184 1 chr2B.!!$R1 642
15 TraesCS1B01G476700 chr2B 663127940 663131365 3425 True 581.000000 695 82.916000 1831 5463 3 chr2B.!!$R3 3632
16 TraesCS1B01G476700 chr2D 556054429 556057886 3457 True 585.333333 686 84.320667 1831 5463 3 chr2D.!!$R4 3632
17 TraesCS1B01G476700 chr2A 695507371 695510822 3451 True 577.333333 676 82.694667 1831 5463 3 chr2A.!!$R1 3632
18 TraesCS1B01G476700 chr1A 31161555 31162106 551 False 483.000000 483 82.437000 1987 2544 1 chr1A.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1000 0.101219 GCAAAGAGCGGCAAATAGGG 59.899 55.000 1.45 0.00 0.00 3.53 F
1239 1356 0.392998 TGGAAGCTTCTTCATCCGGC 60.393 55.000 25.05 6.52 34.60 6.13 F
1909 2164 0.250513 GGTCAGCGATCTTTCCAGGT 59.749 55.000 0.00 0.00 0.00 4.00 F
2739 3125 0.749649 ATCAGTCCCTGTGATCGAGC 59.250 55.000 0.00 0.00 27.81 5.03 F
4075 5161 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02 F
4076 5162 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41 F
5118 12558 1.227853 GACCTGTTGGAACTGCGGT 60.228 57.895 0.00 0.00 37.04 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1977 0.030195 TCCAGGGCACATATCTGGGA 60.030 55.0 8.5 0.0 45.89 4.37 R
2148 2420 1.235948 GCAGGAGGCATGATAGCAGC 61.236 60.0 0.0 0.0 43.97 5.25 R
3339 3989 0.475906 AGCTACCCGTCTACCCGTAT 59.524 55.0 0.0 0.0 0.00 3.06 R
4352 5444 0.532573 ACATGCTACCAGGTCTGACG 59.467 55.0 0.0 0.0 28.14 4.35 R
5398 12841 0.602562 CCTTTCGAATTGCTTGGCCA 59.397 50.0 0.0 0.0 0.00 5.36 R
5968 13575 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.0 0.0 0.0 0.00 3.28 R
6514 14296 0.034337 ACAACATACGTGTCCGCCTT 59.966 50.0 0.0 0.0 37.67 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.928295 CAAAAACAACTTGCGATGCC 57.072 45.000 0.00 0.00 0.00 4.40
39 40 1.405526 CGATCGAACCCACCAACTGAT 60.406 52.381 10.26 0.00 0.00 2.90
72 73 4.735132 GCGCTAGCCACCACGACA 62.735 66.667 9.66 0.00 37.42 4.35
88 103 5.763204 ACCACGACAGAAAGAATTACAACAT 59.237 36.000 0.00 0.00 0.00 2.71
121 136 4.278419 AGAATCTAACAGTGGCCACAAAAC 59.722 41.667 36.39 10.72 0.00 2.43
133 148 4.223032 TGGCCACAAAACTTAAAAACCAGA 59.777 37.500 0.00 0.00 0.00 3.86
137 152 7.430441 GCCACAAAACTTAAAAACCAGATCTA 58.570 34.615 0.00 0.00 0.00 1.98
139 154 7.589954 CCACAAAACTTAAAAACCAGATCTACG 59.410 37.037 0.00 0.00 0.00 3.51
142 157 9.893305 CAAAACTTAAAAACCAGATCTACGAAT 57.107 29.630 0.00 0.00 0.00 3.34
146 161 9.893305 ACTTAAAAACCAGATCTACGAATTTTG 57.107 29.630 0.00 0.00 0.00 2.44
261 276 9.858247 GAAAACTAAAAATGTTTTCGAAATCCC 57.142 29.630 12.12 3.75 46.92 3.85
264 279 5.560722 AAAAATGTTTTCGAAATCCCCCT 57.439 34.783 12.12 0.00 0.00 4.79
265 280 4.535526 AAATGTTTTCGAAATCCCCCTG 57.464 40.909 12.12 0.00 0.00 4.45
301 317 9.224267 TGAATTGGAGAACAAATTTTGAAAACA 57.776 25.926 15.81 5.44 43.46 2.83
302 318 9.489393 GAATTGGAGAACAAATTTTGAAAACAC 57.511 29.630 15.81 2.71 43.46 3.32
303 319 7.969536 TTGGAGAACAAATTTTGAAAACACA 57.030 28.000 15.81 4.99 35.79 3.72
524 549 9.900264 GTTTGTGATTGTTTAGAAAATGTGAAC 57.100 29.630 0.00 0.00 0.00 3.18
525 550 9.645059 TTTGTGATTGTTTAGAAAATGTGAACA 57.355 25.926 0.00 0.00 0.00 3.18
601 629 9.703892 TTTCTGAACAAATTTTGAAAACAGAGA 57.296 25.926 15.81 13.89 34.14 3.10
602 630 8.687824 TCTGAACAAATTTTGAAAACAGAGAC 57.312 30.769 15.81 0.00 31.68 3.36
613 642 9.500785 TTTTGAAAACAGAGACTTTTTCCAAAT 57.499 25.926 7.90 0.00 39.83 2.32
795 828 6.702329 GTTGAGGAACCTTCTAGAAGATTCA 58.298 40.000 31.72 22.35 41.66 2.57
797 830 5.187967 TGAGGAACCTTCTAGAAGATTCACC 59.812 44.000 31.72 24.01 41.66 4.02
833 866 4.093743 ACATCATAAGGTTCCCAAAACCC 58.906 43.478 3.39 0.00 41.18 4.11
846 937 1.939255 CAAAACCCGCAAAACAGCAAT 59.061 42.857 0.00 0.00 0.00 3.56
852 943 2.288763 CCCGCAAAACAGCAATTTACCT 60.289 45.455 0.00 0.00 0.00 3.08
853 944 3.057174 CCCGCAAAACAGCAATTTACCTA 60.057 43.478 0.00 0.00 0.00 3.08
909 1000 0.101219 GCAAAGAGCGGCAAATAGGG 59.899 55.000 1.45 0.00 0.00 3.53
934 1025 0.954452 GGCACTGGAGACCAAAGTTG 59.046 55.000 0.00 0.00 30.80 3.16
935 1026 1.680338 GCACTGGAGACCAAAGTTGT 58.320 50.000 0.00 0.00 30.80 3.32
1233 1350 1.302511 GCCGGTGGAAGCTTCTTCA 60.303 57.895 25.05 13.35 0.00 3.02
1239 1356 0.392998 TGGAAGCTTCTTCATCCGGC 60.393 55.000 25.05 6.52 34.60 6.13
1305 1422 4.208632 CACGAGCTGGTGGGATTC 57.791 61.111 20.15 0.00 34.27 2.52
1326 1443 1.340795 GGTCGGGAGAGAGTGGAGTTA 60.341 57.143 0.00 0.00 41.26 2.24
1450 1600 5.786401 TCGAATTAAGCTTGAAAGAGAGC 57.214 39.130 9.86 0.00 39.17 4.09
1656 1806 4.384208 GCTGGTTCTTGAGGGCTAGAATTA 60.384 45.833 0.00 0.00 37.98 1.40
1657 1807 5.688766 GCTGGTTCTTGAGGGCTAGAATTAT 60.689 44.000 0.00 0.00 37.98 1.28
1658 1808 6.327386 TGGTTCTTGAGGGCTAGAATTATT 57.673 37.500 0.00 0.00 37.98 1.40
1659 1809 6.122277 TGGTTCTTGAGGGCTAGAATTATTG 58.878 40.000 0.00 0.00 37.98 1.90
1660 1810 6.122964 GGTTCTTGAGGGCTAGAATTATTGT 58.877 40.000 0.00 0.00 37.98 2.71
1661 1811 6.603599 GGTTCTTGAGGGCTAGAATTATTGTT 59.396 38.462 0.00 0.00 37.98 2.83
1662 1812 7.122799 GGTTCTTGAGGGCTAGAATTATTGTTT 59.877 37.037 0.00 0.00 37.98 2.83
1663 1813 8.523658 GTTCTTGAGGGCTAGAATTATTGTTTT 58.476 33.333 0.00 0.00 37.98 2.43
1664 1814 8.650143 TCTTGAGGGCTAGAATTATTGTTTTT 57.350 30.769 0.00 0.00 0.00 1.94
1692 1842 5.876651 ATATCTCACTACAAGGATGCACA 57.123 39.130 0.00 0.00 0.00 4.57
1747 1897 6.109359 AGTTCACTACTTTATCAGGTCATGC 58.891 40.000 0.00 0.00 31.29 4.06
1892 2147 5.251700 AGTCATGTTCAATAGAAAGGAGGGT 59.748 40.000 0.00 0.00 35.08 4.34
1909 2164 0.250513 GGTCAGCGATCTTTCCAGGT 59.749 55.000 0.00 0.00 0.00 4.00
1910 2165 1.480954 GGTCAGCGATCTTTCCAGGTA 59.519 52.381 0.00 0.00 0.00 3.08
2148 2420 3.065371 GGGTTCAGCATTTACCTTCGATG 59.935 47.826 0.00 0.00 32.46 3.84
2515 2788 5.922739 TTTGTATGCTATCCATTACTGCG 57.077 39.130 0.00 0.00 35.34 5.18
2517 2790 2.549064 ATGCTATCCATTACTGCGCA 57.451 45.000 10.98 10.98 0.00 6.09
2675 3061 5.105269 TGACAGAAATAACCGCCACATAGTA 60.105 40.000 0.00 0.00 0.00 1.82
2739 3125 0.749649 ATCAGTCCCTGTGATCGAGC 59.250 55.000 0.00 0.00 27.81 5.03
2749 3135 1.347707 TGTGATCGAGCCCTTGTTCTT 59.652 47.619 0.00 0.00 0.00 2.52
3001 3419 3.537580 TGTAGTGAAGTTGTTGTGTCCC 58.462 45.455 0.00 0.00 0.00 4.46
3121 3540 4.157289 ACTCTTGATGCAATGGTTGATGTC 59.843 41.667 0.00 0.00 0.00 3.06
3219 3638 1.728971 CTTCTGCGCACTTTGTAGAGG 59.271 52.381 5.66 0.00 0.00 3.69
3318 3968 8.518702 TCACACTTTTGCAATATGTTTATGCTA 58.481 29.630 0.00 0.00 0.00 3.49
3319 3969 9.304731 CACACTTTTGCAATATGTTTATGCTAT 57.695 29.630 0.00 0.00 0.00 2.97
3339 3989 6.071221 TGCTATGTCTTTTACTTCGGAGGTTA 60.071 38.462 0.00 0.00 0.00 2.85
3357 4007 2.185004 TATACGGGTAGACGGGTAGC 57.815 55.000 0.00 0.00 38.39 3.58
3484 4139 1.059913 CCCTTCCTTCTGTGGTCTGT 58.940 55.000 0.00 0.00 0.00 3.41
3567 4489 8.560374 GTGGAAAATCTATTGCTATTAGGTCAC 58.440 37.037 0.00 0.00 0.00 3.67
3609 4531 3.405823 CCAAGGTTGGCAAATCATGTT 57.594 42.857 0.00 0.00 42.21 2.71
3615 4537 3.592059 GTTGGCAAATCATGTTCTGCAT 58.408 40.909 0.00 0.00 38.60 3.96
3618 4540 3.512329 TGGCAAATCATGTTCTGCATTCT 59.488 39.130 14.48 0.00 35.19 2.40
3780 4866 3.834231 ACCTTGTCCCAATCAATTCTTGG 59.166 43.478 8.71 8.71 42.36 3.61
3784 4870 4.671831 TGTCCCAATCAATTCTTGGCTTA 58.328 39.130 9.83 0.00 41.55 3.09
3813 4899 0.772124 TTCTGTCCCTCCTGCCCTTT 60.772 55.000 0.00 0.00 0.00 3.11
3965 5051 9.030452 AGAACTATCAACATCTGATATACTCCC 57.970 37.037 0.00 0.00 44.36 4.30
3966 5052 8.964533 AACTATCAACATCTGATATACTCCCT 57.035 34.615 0.00 0.00 44.36 4.20
3967 5053 8.588290 ACTATCAACATCTGATATACTCCCTC 57.412 38.462 0.00 0.00 44.36 4.30
3968 5054 6.865834 ATCAACATCTGATATACTCCCTCC 57.134 41.667 0.00 0.00 43.32 4.30
3969 5055 4.767409 TCAACATCTGATATACTCCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
3970 5056 4.390129 ACATCTGATATACTCCCTCCGT 57.610 45.455 0.00 0.00 0.00 4.69
3971 5057 4.742012 ACATCTGATATACTCCCTCCGTT 58.258 43.478 0.00 0.00 0.00 4.44
3972 5058 4.767928 ACATCTGATATACTCCCTCCGTTC 59.232 45.833 0.00 0.00 0.00 3.95
3973 5059 4.448720 TCTGATATACTCCCTCCGTTCA 57.551 45.455 0.00 0.00 0.00 3.18
3974 5060 4.999310 TCTGATATACTCCCTCCGTTCAT 58.001 43.478 0.00 0.00 0.00 2.57
3975 5061 6.135819 TCTGATATACTCCCTCCGTTCATA 57.864 41.667 0.00 0.00 0.00 2.15
3976 5062 6.549242 TCTGATATACTCCCTCCGTTCATAA 58.451 40.000 0.00 0.00 0.00 1.90
3977 5063 7.008332 TCTGATATACTCCCTCCGTTCATAAA 58.992 38.462 0.00 0.00 0.00 1.40
3978 5064 7.674348 TCTGATATACTCCCTCCGTTCATAAAT 59.326 37.037 0.00 0.00 0.00 1.40
3979 5065 8.888836 TGATATACTCCCTCCGTTCATAAATA 57.111 34.615 0.00 0.00 0.00 1.40
3980 5066 9.488762 TGATATACTCCCTCCGTTCATAAATAT 57.511 33.333 0.00 0.00 0.00 1.28
3984 5070 7.613551 ACTCCCTCCGTTCATAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
3985 5071 7.668492 ACTCCCTCCGTTCATAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
3986 5072 7.509659 ACTCCCTCCGTTCATAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
3987 5073 8.258850 TCCCTCCGTTCATAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
3988 5074 8.711170 TCCCTCCGTTCATAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
3989 5075 8.774586 CCCTCCGTTCATAAATATAAGTCTTTG 58.225 37.037 0.00 0.00 0.00 2.77
3990 5076 9.326413 CCTCCGTTCATAAATATAAGTCTTTGT 57.674 33.333 0.00 0.00 0.00 2.83
4006 5092 8.463930 AAGTCTTTGTAAAGATTTCACCATGA 57.536 30.769 9.98 0.00 45.83 3.07
4007 5093 8.463930 AGTCTTTGTAAAGATTTCACCATGAA 57.536 30.769 9.98 0.00 45.83 2.57
4008 5094 8.352942 AGTCTTTGTAAAGATTTCACCATGAAC 58.647 33.333 9.98 0.00 45.83 3.18
4009 5095 7.595130 GTCTTTGTAAAGATTTCACCATGAACC 59.405 37.037 9.98 0.00 45.83 3.62
4010 5096 6.968263 TTGTAAAGATTTCACCATGAACCA 57.032 33.333 0.00 0.00 35.89 3.67
4011 5097 6.325919 TGTAAAGATTTCACCATGAACCAC 57.674 37.500 0.00 0.00 35.89 4.16
4012 5098 5.830457 TGTAAAGATTTCACCATGAACCACA 59.170 36.000 0.00 0.00 35.89 4.17
4013 5099 6.493115 TGTAAAGATTTCACCATGAACCACAT 59.507 34.615 0.00 0.00 35.89 3.21
4014 5100 7.667635 TGTAAAGATTTCACCATGAACCACATA 59.332 33.333 0.00 0.00 35.89 2.29
4015 5101 6.515272 AAGATTTCACCATGAACCACATAC 57.485 37.500 0.00 0.00 35.89 2.39
4016 5102 4.635765 AGATTTCACCATGAACCACATACG 59.364 41.667 0.00 0.00 35.89 3.06
4017 5103 2.394930 TCACCATGAACCACATACGG 57.605 50.000 0.00 0.00 37.46 4.02
4018 5104 1.903183 TCACCATGAACCACATACGGA 59.097 47.619 0.00 0.00 37.46 4.69
4019 5105 2.503765 TCACCATGAACCACATACGGAT 59.496 45.455 0.00 0.00 37.46 4.18
4020 5106 2.613595 CACCATGAACCACATACGGATG 59.386 50.000 5.94 5.94 37.46 3.51
4021 5107 7.550415 TTCACCATGAACCACATACGGATGT 62.550 44.000 7.68 7.68 37.89 3.06
4022 5108 3.452990 ACCATGAACCACATACGGATGTA 59.547 43.478 14.23 0.00 44.82 2.29
4023 5109 4.102524 ACCATGAACCACATACGGATGTAT 59.897 41.667 14.23 1.38 44.82 2.29
4024 5110 4.690748 CCATGAACCACATACGGATGTATC 59.309 45.833 14.23 12.54 44.82 2.24
4025 5111 5.511373 CCATGAACCACATACGGATGTATCT 60.511 44.000 14.23 0.00 44.82 1.98
4026 5112 6.295067 CCATGAACCACATACGGATGTATCTA 60.295 42.308 14.23 0.00 44.82 1.98
4027 5113 6.327279 TGAACCACATACGGATGTATCTAG 57.673 41.667 14.23 0.00 44.82 2.43
4028 5114 6.066032 TGAACCACATACGGATGTATCTAGA 58.934 40.000 14.23 0.00 44.82 2.43
4029 5115 6.719829 TGAACCACATACGGATGTATCTAGAT 59.280 38.462 14.23 10.73 44.82 1.98
4030 5116 6.516739 ACCACATACGGATGTATCTAGATG 57.483 41.667 14.23 0.00 44.82 2.90
4031 5117 5.105716 ACCACATACGGATGTATCTAGATGC 60.106 44.000 14.23 14.54 44.82 3.91
4032 5118 5.105756 CCACATACGGATGTATCTAGATGCA 60.106 44.000 23.38 23.38 44.82 3.96
4033 5119 6.406288 CCACATACGGATGTATCTAGATGCAT 60.406 42.308 29.54 29.54 44.82 3.96
4034 5120 7.038048 CACATACGGATGTATCTAGATGCATT 58.962 38.462 29.66 19.73 44.82 3.56
4035 5121 7.547019 CACATACGGATGTATCTAGATGCATTT 59.453 37.037 29.66 21.00 44.82 2.32
4036 5122 8.097038 ACATACGGATGTATCTAGATGCATTTT 58.903 33.333 29.66 20.74 44.77 1.82
4037 5123 9.586435 CATACGGATGTATCTAGATGCATTTTA 57.414 33.333 29.66 21.80 42.77 1.52
4038 5124 9.809096 ATACGGATGTATCTAGATGCATTTTAG 57.191 33.333 29.66 22.88 42.77 1.85
4039 5125 7.896811 ACGGATGTATCTAGATGCATTTTAGA 58.103 34.615 29.66 18.53 42.77 2.10
4040 5126 8.031864 ACGGATGTATCTAGATGCATTTTAGAG 58.968 37.037 29.66 20.36 42.77 2.43
4041 5127 8.031864 CGGATGTATCTAGATGCATTTTAGAGT 58.968 37.037 29.66 12.13 42.77 3.24
4062 5148 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
4063 5149 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
4064 5150 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
4065 5151 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4066 5152 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4067 5153 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4068 5154 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4069 5155 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4070 5156 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
4071 5157 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
4072 5158 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
4073 5159 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
4074 5160 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
4075 5161 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
4076 5162 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
4077 5163 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
4078 5164 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
4079 5165 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
4080 5166 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
4081 5167 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
4082 5168 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
4104 5190 7.497925 GGAATCGCTCCAAAGACTTATATTT 57.502 36.000 0.00 0.00 44.67 1.40
4105 5191 7.931275 GGAATCGCTCCAAAGACTTATATTTT 58.069 34.615 0.00 0.00 44.67 1.82
4106 5192 7.857885 GGAATCGCTCCAAAGACTTATATTTTG 59.142 37.037 0.00 0.00 44.67 2.44
4115 5201 7.472543 CAAAGACTTATATTTTGGAACGGAGG 58.527 38.462 0.00 0.00 0.00 4.30
4116 5202 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4117 5203 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4118 5204 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4352 5444 9.109393 TGCTGATTTACTAAATCCTGTACAATC 57.891 33.333 15.89 0.00 45.23 2.67
4394 5486 3.768757 TGATTGGATCATTGGTTTCCACC 59.231 43.478 0.00 0.00 39.21 4.61
4470 5678 2.173569 GACTAGATCCTGGCCAATGGTT 59.826 50.000 7.01 0.00 0.00 3.67
4695 8757 2.305009 AGATTGCAGAAGCTTATGCCC 58.695 47.619 35.74 25.69 44.30 5.36
4725 8804 2.947652 CACTGAATGCCCTTGGACTATG 59.052 50.000 0.00 0.00 0.00 2.23
4737 8816 5.048013 CCCTTGGACTATGGAAGTTTTGTTC 60.048 44.000 0.00 0.00 39.07 3.18
4826 12247 1.382522 AATCCGCTGTATGGTTGCAG 58.617 50.000 0.00 0.00 38.49 4.41
4840 12261 6.839124 ATGGTTGCAGTGAAGATAATTCAA 57.161 33.333 0.00 0.00 0.00 2.69
5019 12459 5.301835 AGCTTATGGATGAAGTATGCAGT 57.698 39.130 0.00 0.00 40.65 4.40
5118 12558 1.227853 GACCTGTTGGAACTGCGGT 60.228 57.895 0.00 0.00 37.04 5.68
5324 12767 1.610522 GGATGCCAATGAATCGAAGGG 59.389 52.381 0.00 0.00 0.00 3.95
5398 12841 1.553706 CTTACCCGTGTCCTACCTGT 58.446 55.000 0.00 0.00 0.00 4.00
5425 12868 6.756542 GCCAAGCAATTCGAAAGGTAAATATT 59.243 34.615 0.00 0.00 0.00 1.28
5546 13007 1.532868 GCTGCTACTTGTGGTCACTTG 59.467 52.381 2.66 0.00 0.00 3.16
5570 13031 6.317893 TGTCTTTCCCTTGAAAAGTTACTCAC 59.682 38.462 0.00 0.00 44.25 3.51
5681 13267 8.557592 AGCAAGGTGTATTTTTAGTTACTACC 57.442 34.615 0.00 0.00 0.00 3.18
5682 13268 8.380867 AGCAAGGTGTATTTTTAGTTACTACCT 58.619 33.333 0.00 0.00 34.34 3.08
5684 13270 9.159364 CAAGGTGTATTTTTAGTTACTACCTCC 57.841 37.037 0.41 0.00 33.04 4.30
5685 13271 7.550712 AGGTGTATTTTTAGTTACTACCTCCG 58.449 38.462 0.00 0.00 30.69 4.63
5686 13272 7.179160 AGGTGTATTTTTAGTTACTACCTCCGT 59.821 37.037 0.00 0.00 30.69 4.69
5687 13273 7.276438 GGTGTATTTTTAGTTACTACCTCCGTG 59.724 40.741 0.00 0.00 0.00 4.94
5700 13290 6.646267 ACTACCTCCGTGCAAAATATAAGAA 58.354 36.000 0.00 0.00 0.00 2.52
5734 13333 8.728088 AGTTCAGCAAAAACGTCTTATATTTG 57.272 30.769 0.00 0.00 34.84 2.32
5735 13334 7.807907 AGTTCAGCAAAAACGTCTTATATTTGG 59.192 33.333 0.00 0.00 32.91 3.28
5736 13335 6.090129 TCAGCAAAAACGTCTTATATTTGGC 58.910 36.000 0.19 0.19 32.97 4.52
5820 13427 5.817296 AGCATGCTCGTAATTAATGAACTCA 59.183 36.000 16.30 0.00 0.00 3.41
5939 13546 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5940 13547 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5942 13549 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5943 13550 5.648178 TTTGCTCCGTATGTAGTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
5945 13552 5.847111 TGCTCCGTATGTAGTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
5946 13553 5.588240 TGCTCCGTATGTAGTCACTTATTG 58.412 41.667 0.00 0.00 0.00 1.90
5947 13554 4.982916 GCTCCGTATGTAGTCACTTATTGG 59.017 45.833 0.00 0.00 0.00 3.16
5949 13556 6.387041 TCCGTATGTAGTCACTTATTGGAG 57.613 41.667 0.00 0.00 0.00 3.86
5950 13557 5.889853 TCCGTATGTAGTCACTTATTGGAGT 59.110 40.000 0.00 0.00 0.00 3.85
5951 13558 7.056006 TCCGTATGTAGTCACTTATTGGAGTA 58.944 38.462 0.00 0.00 0.00 2.59
5952 13559 7.722728 TCCGTATGTAGTCACTTATTGGAGTAT 59.277 37.037 0.00 0.00 0.00 2.12
5953 13560 8.021973 CCGTATGTAGTCACTTATTGGAGTATC 58.978 40.741 0.00 0.00 0.00 2.24
5954 13561 8.784994 CGTATGTAGTCACTTATTGGAGTATCT 58.215 37.037 0.00 0.00 33.73 1.98
5996 13603 5.774184 GGAACGGAGGGAGTATATCTTAACT 59.226 44.000 0.00 0.00 0.00 2.24
6040 13647 8.627208 ATTGAGTCTGTATTATTTATGCTGGG 57.373 34.615 0.00 0.00 0.00 4.45
6042 13649 7.977818 TGAGTCTGTATTATTTATGCTGGGAT 58.022 34.615 0.00 0.00 0.00 3.85
6084 13691 3.904339 ACAACCATCTCTACTGTTGGTCT 59.096 43.478 1.84 0.00 41.53 3.85
6195 13802 0.037046 ATCCATGATGCTATGCGCGA 60.037 50.000 12.10 0.00 43.27 5.87
6232 13839 2.825532 GCAATGCCCAAAGGTTCTCTTA 59.174 45.455 0.00 0.00 34.78 2.10
6238 13845 3.367395 GCCCAAAGGTTCTCTTACATTGC 60.367 47.826 0.00 0.00 34.78 3.56
6240 13847 4.280677 CCCAAAGGTTCTCTTACATTGCAA 59.719 41.667 0.00 0.00 34.78 4.08
6241 13848 5.464168 CCAAAGGTTCTCTTACATTGCAAG 58.536 41.667 4.94 0.00 34.78 4.01
6242 13849 5.241506 CCAAAGGTTCTCTTACATTGCAAGA 59.758 40.000 4.94 0.00 34.78 3.02
6244 13851 5.234466 AGGTTCTCTTACATTGCAAGACT 57.766 39.130 4.94 0.00 0.00 3.24
6245 13852 5.241662 AGGTTCTCTTACATTGCAAGACTC 58.758 41.667 4.94 0.00 0.00 3.36
6264 13979 4.642429 ACTCGTAACAGCATTTCCTTTCT 58.358 39.130 0.00 0.00 0.00 2.52
6355 14087 7.806014 TGTGAGGCGAATTAAGTTAAATGTTTC 59.194 33.333 0.00 0.00 0.00 2.78
6356 14088 7.007099 GTGAGGCGAATTAAGTTAAATGTTTCG 59.993 37.037 18.28 18.28 37.95 3.46
6382 14114 3.756434 CTGGAAATCCGTATGTGTTGGTT 59.244 43.478 0.00 0.00 39.43 3.67
6383 14115 3.504134 TGGAAATCCGTATGTGTTGGTTG 59.496 43.478 0.00 0.00 39.43 3.77
6384 14116 3.119637 GGAAATCCGTATGTGTTGGTTGG 60.120 47.826 0.00 0.00 0.00 3.77
6385 14117 2.122783 ATCCGTATGTGTTGGTTGGG 57.877 50.000 0.00 0.00 0.00 4.12
6387 14119 1.591504 CCGTATGTGTTGGTTGGGCC 61.592 60.000 0.00 0.00 37.90 5.80
6401 14173 2.424956 GTTGGGCCACAAAAATTGCAAA 59.575 40.909 5.23 0.00 41.58 3.68
6417 14189 8.491331 AAATTGCAAAGTACACAATCAACTTT 57.509 26.923 1.71 0.00 42.60 2.66
6424 14196 5.762045 AGTACACAATCAACTTTGACATGC 58.238 37.500 0.00 0.00 40.49 4.06
6439 14220 2.866762 GACATGCGGGATTCAACTACTC 59.133 50.000 0.00 0.00 0.00 2.59
6486 14268 1.401199 AGTAGTACGAAGAAGAGCGGC 59.599 52.381 0.00 0.00 0.00 6.53
6493 14275 1.300481 GAAGAAGAGCGGCCCAATAC 58.700 55.000 0.00 0.00 0.00 1.89
6494 14276 0.618458 AAGAAGAGCGGCCCAATACA 59.382 50.000 0.00 0.00 0.00 2.29
6495 14277 0.618458 AGAAGAGCGGCCCAATACAA 59.382 50.000 0.00 0.00 0.00 2.41
6496 14278 1.017387 GAAGAGCGGCCCAATACAAG 58.983 55.000 0.00 0.00 0.00 3.16
6497 14279 0.394352 AAGAGCGGCCCAATACAAGG 60.394 55.000 0.00 0.00 0.00 3.61
6505 14287 2.631267 GCCCAATACAAGGCCAAAATG 58.369 47.619 5.01 0.21 43.76 2.32
6506 14288 2.027285 GCCCAATACAAGGCCAAAATGT 60.027 45.455 5.01 7.14 43.76 2.71
6507 14289 3.860641 CCCAATACAAGGCCAAAATGTC 58.139 45.455 5.01 0.00 0.00 3.06
6508 14290 3.515104 CCCAATACAAGGCCAAAATGTCT 59.485 43.478 5.01 0.00 0.00 3.41
6509 14291 4.381932 CCCAATACAAGGCCAAAATGTCTC 60.382 45.833 5.01 0.00 0.00 3.36
6510 14292 4.381932 CCAATACAAGGCCAAAATGTCTCC 60.382 45.833 5.01 0.00 0.00 3.71
6511 14293 2.380064 ACAAGGCCAAAATGTCTCCA 57.620 45.000 5.01 0.00 0.00 3.86
6512 14294 2.676748 ACAAGGCCAAAATGTCTCCAA 58.323 42.857 5.01 0.00 0.00 3.53
6513 14295 3.037549 ACAAGGCCAAAATGTCTCCAAA 58.962 40.909 5.01 0.00 0.00 3.28
6514 14296 3.454082 ACAAGGCCAAAATGTCTCCAAAA 59.546 39.130 5.01 0.00 0.00 2.44
6515 14297 4.080638 ACAAGGCCAAAATGTCTCCAAAAA 60.081 37.500 5.01 0.00 0.00 1.94
6516 14298 4.341366 AGGCCAAAATGTCTCCAAAAAG 57.659 40.909 5.01 0.00 0.00 2.27
6517 14299 3.071457 AGGCCAAAATGTCTCCAAAAAGG 59.929 43.478 5.01 0.00 39.47 3.11
6518 14300 2.807967 GCCAAAATGTCTCCAAAAAGGC 59.192 45.455 0.00 0.00 37.29 4.35
6519 14301 3.059166 CCAAAATGTCTCCAAAAAGGCG 58.941 45.455 0.00 0.00 37.29 5.52
6520 14302 3.059166 CAAAATGTCTCCAAAAAGGCGG 58.941 45.455 0.00 0.00 37.29 6.13
6521 14303 2.286365 AATGTCTCCAAAAAGGCGGA 57.714 45.000 0.00 0.00 37.29 5.54
6522 14304 1.534729 ATGTCTCCAAAAAGGCGGAC 58.465 50.000 0.00 0.00 39.02 4.79
6523 14305 0.181587 TGTCTCCAAAAAGGCGGACA 59.818 50.000 0.00 0.00 42.86 4.02
6524 14306 0.591659 GTCTCCAAAAAGGCGGACAC 59.408 55.000 0.00 0.00 38.68 3.67
6525 14307 0.882927 TCTCCAAAAAGGCGGACACG 60.883 55.000 0.00 0.00 44.63 4.49
6526 14308 1.153127 TCCAAAAAGGCGGACACGT 60.153 52.632 0.00 0.00 43.45 4.49
6527 14309 0.106335 TCCAAAAAGGCGGACACGTA 59.894 50.000 0.00 0.00 43.45 3.57
6528 14310 1.161843 CCAAAAAGGCGGACACGTAT 58.838 50.000 0.00 0.00 43.45 3.06
6529 14311 1.135803 CCAAAAAGGCGGACACGTATG 60.136 52.381 0.00 0.00 43.45 2.39
6530 14312 1.533731 CAAAAAGGCGGACACGTATGT 59.466 47.619 0.00 0.00 43.71 2.29
6531 14313 1.886886 AAAAGGCGGACACGTATGTT 58.113 45.000 0.00 0.00 39.95 2.71
6532 14314 1.153353 AAAGGCGGACACGTATGTTG 58.847 50.000 0.00 0.00 39.95 3.33
6533 14315 0.034337 AAGGCGGACACGTATGTTGT 59.966 50.000 0.00 0.00 39.95 3.32
6534 14316 0.889994 AGGCGGACACGTATGTTGTA 59.110 50.000 0.00 0.00 39.95 2.41
6535 14317 1.135199 AGGCGGACACGTATGTTGTAG 60.135 52.381 0.00 0.00 39.95 2.74
6536 14318 1.403249 GGCGGACACGTATGTTGTAGT 60.403 52.381 0.00 0.00 39.95 2.73
6537 14319 2.331194 GCGGACACGTATGTTGTAGTT 58.669 47.619 0.00 0.00 39.95 2.24
6540 14322 4.475028 CGGACACGTATGTTGTAGTTACA 58.525 43.478 0.00 0.00 39.95 2.41
6563 14345 2.429236 CTCCTATACGGCGCTGCG 60.429 66.667 18.15 19.17 0.00 5.18
6565 14347 3.973516 CCTATACGGCGCTGCGGA 61.974 66.667 24.61 4.38 33.14 5.54
6725 14512 0.175302 CTAGAGACTGCAGCCACCTG 59.825 60.000 15.27 0.00 42.13 4.00
6739 14526 5.680619 CAGCCACCTGATAATACTTACCAA 58.319 41.667 0.00 0.00 41.77 3.67
6760 14547 8.466617 ACCAATGGTACTGTGTGTTATTTAAA 57.533 30.769 1.52 0.00 32.11 1.52
6802 14589 5.303333 TGGTCCAAAATTTAGAAGTTCCCAC 59.697 40.000 0.00 0.00 0.00 4.61
7004 14791 5.912396 TGGATCGAAAAAGTTCACGAAATTG 59.088 36.000 0.00 0.00 38.22 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.046700 TTGGTGGGTTCGATCGGC 60.047 61.111 16.41 8.62 0.00 5.54
18 19 1.019278 CAGTTGGTGGGTTCGATCGG 61.019 60.000 16.41 0.00 0.00 4.18
19 20 0.037697 TCAGTTGGTGGGTTCGATCG 60.038 55.000 9.36 9.36 0.00 3.69
24 25 3.335579 GTCTACATCAGTTGGTGGGTTC 58.664 50.000 0.00 0.00 0.00 3.62
67 68 5.995282 TCCATGTTGTAATTCTTTCTGTCGT 59.005 36.000 0.00 0.00 0.00 4.34
88 103 6.823689 GCCACTGTTAGATTCTTTAAGATCCA 59.176 38.462 0.00 0.00 0.00 3.41
102 117 3.290948 AGTTTTGTGGCCACTGTTAGA 57.709 42.857 34.75 12.54 0.00 2.10
253 268 4.535526 AAAAATGTTCAGGGGGATTTCG 57.464 40.909 0.00 0.00 0.00 3.46
301 317 9.956720 TGTTCACAAATTCAAAATTTTGTTTGT 57.043 22.222 29.01 29.01 42.76 2.83
386 402 7.835634 TGTTTCAAGGTTTGTCCAAAAATAC 57.164 32.000 0.00 0.00 39.02 1.89
387 403 8.260818 TCATGTTTCAAGGTTTGTCCAAAAATA 58.739 29.630 0.00 0.00 39.02 1.40
392 408 5.047021 TGTTCATGTTTCAAGGTTTGTCCAA 60.047 36.000 0.00 0.00 39.02 3.53
587 615 8.894768 TTTGGAAAAAGTCTCTGTTTTCAAAA 57.105 26.923 13.35 9.40 40.89 2.44
746 777 9.656040 ACCGGTTTTTATTTTTCAGTTACTTTT 57.344 25.926 0.00 0.00 0.00 2.27
754 787 6.508777 TCCTCAACCGGTTTTTATTTTTCAG 58.491 36.000 19.55 1.38 0.00 3.02
791 824 4.658063 TGTTTCTATCCGGTTTGGTGAAT 58.342 39.130 0.00 0.00 39.52 2.57
795 828 4.295141 TGATGTTTCTATCCGGTTTGGT 57.705 40.909 0.00 0.00 39.52 3.67
797 830 6.542370 ACCTTATGATGTTTCTATCCGGTTTG 59.458 38.462 0.00 0.00 0.00 2.93
833 866 6.517914 TTTTAGGTAAATTGCTGTTTTGCG 57.482 33.333 0.00 0.00 35.36 4.85
868 959 2.034124 ACAGGTTGCTGTTTTGCATCT 58.966 42.857 0.00 0.00 42.96 2.90
869 960 2.397549 GACAGGTTGCTGTTTTGCATC 58.602 47.619 0.00 0.00 42.96 3.91
909 1000 1.079750 GGTCTCCAGTGCCGAAGAC 60.080 63.158 0.00 0.00 37.90 3.01
934 1025 4.742438 TGTATTCTGGCGAGAACAAAAC 57.258 40.909 13.79 10.00 41.12 2.43
935 1026 5.957842 AATGTATTCTGGCGAGAACAAAA 57.042 34.783 13.79 0.79 41.12 2.44
974 1065 4.384547 CGTTTTGGACCGAATGAATTTTCC 59.615 41.667 0.00 0.00 0.00 3.13
1213 1330 3.901797 AAGAAGCTTCCACCGGCGG 62.902 63.158 27.06 27.06 0.00 6.13
1305 1422 2.045242 TCCACTCTCTCCCGACCG 60.045 66.667 0.00 0.00 0.00 4.79
1326 1443 2.948720 GCGCACCTCCTCCTCAGTT 61.949 63.158 0.30 0.00 0.00 3.16
1450 1600 4.800993 CCTTGTCTGCAACTAACTATCTCG 59.199 45.833 0.00 0.00 0.00 4.04
1670 1820 5.365025 AGTGTGCATCCTTGTAGTGAGATAT 59.635 40.000 0.00 0.00 0.00 1.63
1678 1828 3.519579 CTCTCAGTGTGCATCCTTGTAG 58.480 50.000 0.00 0.00 0.00 2.74
1681 1831 1.085091 GCTCTCAGTGTGCATCCTTG 58.915 55.000 0.00 0.00 35.45 3.61
1692 1842 0.394565 GGTTCCACAGTGCTCTCAGT 59.605 55.000 0.00 0.00 0.00 3.41
1827 1977 0.030195 TCCAGGGCACATATCTGGGA 60.030 55.000 8.50 0.00 45.89 4.37
1892 2147 8.768501 ATATATATACCTGGAAAGATCGCTGA 57.231 34.615 0.00 0.00 0.00 4.26
2148 2420 1.235948 GCAGGAGGCATGATAGCAGC 61.236 60.000 0.00 0.00 43.97 5.25
2515 2788 3.182372 GGAAACTCGCTGAAACAAATTGC 59.818 43.478 0.00 0.00 0.00 3.56
2517 2790 4.499696 CCAGGAAACTCGCTGAAACAAATT 60.500 41.667 0.00 0.00 40.21 1.82
2682 3068 6.699575 AAATGAGAACCTATAACATGGCAC 57.300 37.500 0.00 0.00 0.00 5.01
2739 3125 6.451064 AAACAGTTTCACTAAGAACAAGGG 57.549 37.500 0.00 0.00 35.56 3.95
2870 3288 8.757982 ACACCTGATGAAGCAATAATTTAGAT 57.242 30.769 0.00 0.00 0.00 1.98
3001 3419 2.006888 ACGGCTCCACATTTTGTATCG 58.993 47.619 0.00 0.00 0.00 2.92
3121 3540 5.120208 AGTTTGACATCTCGGACAATAAACG 59.880 40.000 0.00 0.00 32.50 3.60
3219 3638 3.124921 CCCCAACATGACGTCGCC 61.125 66.667 11.62 0.00 0.00 5.54
3223 3642 1.885887 CATTCAACCCCAACATGACGT 59.114 47.619 0.00 0.00 0.00 4.34
3318 3968 6.976925 CGTATAACCTCCGAAGTAAAAGACAT 59.023 38.462 0.00 0.00 0.00 3.06
3319 3969 6.324819 CGTATAACCTCCGAAGTAAAAGACA 58.675 40.000 0.00 0.00 0.00 3.41
3332 3982 1.882623 CCGTCTACCCGTATAACCTCC 59.117 57.143 0.00 0.00 0.00 4.30
3339 3989 0.475906 AGCTACCCGTCTACCCGTAT 59.524 55.000 0.00 0.00 0.00 3.06
3357 4007 4.463879 CCGCCAGCCTCCAGTGAG 62.464 72.222 0.00 0.00 38.42 3.51
3543 4465 8.910351 AGTGACCTAATAGCAATAGATTTTCC 57.090 34.615 0.00 0.00 0.00 3.13
3567 4489 2.234908 CCCACTGAGGACTTGAGGTAAG 59.765 54.545 0.00 0.00 41.22 2.34
3609 4531 2.745821 GTTCATGCTCACAGAATGCAGA 59.254 45.455 0.00 0.00 42.53 4.26
3615 4537 7.410120 TCTCTATAAGTTCATGCTCACAGAA 57.590 36.000 0.00 0.00 0.00 3.02
3618 4540 7.559486 ACATTCTCTATAAGTTCATGCTCACA 58.441 34.615 0.00 0.00 0.00 3.58
3659 4581 5.239525 GCACAGTTACATTTGAGAACCTTCT 59.760 40.000 0.00 0.00 41.00 2.85
3780 4866 6.404844 GGAGGGACAGAATTAAAGCTTTAAGC 60.405 42.308 29.69 24.12 42.84 3.09
3784 4870 5.012893 CAGGAGGGACAGAATTAAAGCTTT 58.987 41.667 17.30 17.30 0.00 3.51
3813 4899 5.774690 GCCCTATAATGGAAACCAATGATCA 59.225 40.000 0.00 0.00 36.95 2.92
3959 5045 8.716674 ACTTATATTTATGAACGGAGGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
3960 5046 7.509659 AGACTTATATTTATGAACGGAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
3961 5047 7.897864 AGACTTATATTTATGAACGGAGGGAG 58.102 38.462 0.00 0.00 0.00 4.30
3962 5048 7.850935 AGACTTATATTTATGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
3963 5049 8.774586 CAAAGACTTATATTTATGAACGGAGGG 58.225 37.037 0.00 0.00 0.00 4.30
3964 5050 9.326413 ACAAAGACTTATATTTATGAACGGAGG 57.674 33.333 0.00 0.00 0.00 4.30
3980 5066 9.567776 TCATGGTGAAATCTTTACAAAGACTTA 57.432 29.630 6.56 0.00 46.80 2.24
3981 5067 8.463930 TCATGGTGAAATCTTTACAAAGACTT 57.536 30.769 6.56 2.45 46.80 3.01
3982 5068 8.352942 GTTCATGGTGAAATCTTTACAAAGACT 58.647 33.333 6.56 0.00 38.39 3.24
3983 5069 7.595130 GGTTCATGGTGAAATCTTTACAAAGAC 59.405 37.037 6.56 0.00 38.39 3.01
3984 5070 7.286546 TGGTTCATGGTGAAATCTTTACAAAGA 59.713 33.333 6.85 6.85 39.16 2.52
3985 5071 7.382218 GTGGTTCATGGTGAAATCTTTACAAAG 59.618 37.037 0.00 0.00 38.22 2.77
3986 5072 7.147828 TGTGGTTCATGGTGAAATCTTTACAAA 60.148 33.333 0.00 0.00 38.22 2.83
3987 5073 6.322456 TGTGGTTCATGGTGAAATCTTTACAA 59.678 34.615 0.00 0.00 38.22 2.41
3988 5074 5.830457 TGTGGTTCATGGTGAAATCTTTACA 59.170 36.000 0.00 0.00 38.22 2.41
3989 5075 6.325919 TGTGGTTCATGGTGAAATCTTTAC 57.674 37.500 0.00 0.00 38.22 2.01
3990 5076 7.148323 CGTATGTGGTTCATGGTGAAATCTTTA 60.148 37.037 0.00 0.00 38.22 1.85
3991 5077 6.349280 CGTATGTGGTTCATGGTGAAATCTTT 60.349 38.462 0.00 0.00 38.22 2.52
3992 5078 5.123820 CGTATGTGGTTCATGGTGAAATCTT 59.876 40.000 0.00 0.00 38.22 2.40
3993 5079 4.635765 CGTATGTGGTTCATGGTGAAATCT 59.364 41.667 0.00 0.00 38.22 2.40
3994 5080 4.201910 CCGTATGTGGTTCATGGTGAAATC 60.202 45.833 0.00 0.00 38.22 2.17
3995 5081 3.694072 CCGTATGTGGTTCATGGTGAAAT 59.306 43.478 0.00 0.00 38.22 2.17
3996 5082 3.078097 CCGTATGTGGTTCATGGTGAAA 58.922 45.455 0.00 0.00 38.22 2.69
3997 5083 2.303311 TCCGTATGTGGTTCATGGTGAA 59.697 45.455 0.00 0.00 37.91 3.18
3998 5084 1.903183 TCCGTATGTGGTTCATGGTGA 59.097 47.619 0.00 0.00 37.91 4.02
3999 5085 2.394930 TCCGTATGTGGTTCATGGTG 57.605 50.000 0.00 0.00 37.91 4.17
4000 5086 2.238646 ACATCCGTATGTGGTTCATGGT 59.761 45.455 0.00 0.00 44.79 3.55
4001 5087 2.917933 ACATCCGTATGTGGTTCATGG 58.082 47.619 0.00 0.00 44.79 3.66
4002 5088 5.541845 AGATACATCCGTATGTGGTTCATG 58.458 41.667 3.56 0.00 45.99 3.07
4003 5089 5.808366 AGATACATCCGTATGTGGTTCAT 57.192 39.130 3.56 0.00 45.99 2.57
4004 5090 6.066032 TCTAGATACATCCGTATGTGGTTCA 58.934 40.000 3.56 0.00 45.99 3.18
4005 5091 6.570672 TCTAGATACATCCGTATGTGGTTC 57.429 41.667 3.56 0.00 45.99 3.62
4006 5092 6.572509 GCATCTAGATACATCCGTATGTGGTT 60.573 42.308 4.54 0.00 45.99 3.67
4007 5093 5.105716 GCATCTAGATACATCCGTATGTGGT 60.106 44.000 4.54 0.00 45.99 4.16
4008 5094 5.105756 TGCATCTAGATACATCCGTATGTGG 60.106 44.000 4.54 0.00 45.99 4.17
4009 5095 5.954335 TGCATCTAGATACATCCGTATGTG 58.046 41.667 4.54 0.00 45.99 3.21
4011 5097 8.484641 AAAATGCATCTAGATACATCCGTATG 57.515 34.615 17.09 0.00 38.48 2.39
4012 5098 9.809096 CTAAAATGCATCTAGATACATCCGTAT 57.191 33.333 17.09 0.85 41.16 3.06
4013 5099 9.020731 TCTAAAATGCATCTAGATACATCCGTA 57.979 33.333 17.09 9.71 0.00 4.02
4014 5100 7.896811 TCTAAAATGCATCTAGATACATCCGT 58.103 34.615 17.09 9.18 0.00 4.69
4015 5101 8.031864 ACTCTAAAATGCATCTAGATACATCCG 58.968 37.037 17.09 7.74 0.00 4.18
4036 5122 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
4037 5123 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
4038 5124 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
4039 5125 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
4040 5126 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
4041 5127 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
4042 5128 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
4043 5129 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4044 5130 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4045 5131 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4046 5132 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4047 5133 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
4048 5134 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
4049 5135 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
4050 5136 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
4051 5137 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
4052 5138 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
4053 5139 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
4054 5140 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
4055 5141 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
4056 5142 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
4057 5143 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
4058 5144 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
4059 5145 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
4060 5146 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
4061 5147 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
4062 5148 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
4080 5166 7.497925 AAATATAAGTCTTTGGAGCGATTCC 57.502 36.000 0.00 0.00 46.98 3.01
4081 5167 8.773762 CAAAATATAAGTCTTTGGAGCGATTC 57.226 34.615 0.00 0.00 0.00 2.52
4089 5175 7.385778 TCCGTTCCAAAATATAAGTCTTTGG 57.614 36.000 8.88 8.88 46.96 3.28
4090 5176 7.415206 CCCTCCGTTCCAAAATATAAGTCTTTG 60.415 40.741 0.00 0.00 0.00 2.77
4091 5177 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
4092 5178 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
4093 5179 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
4094 5180 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
4095 5181 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
4096 5182 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
4097 5183 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
4098 5184 5.901276 AGTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
4099 5185 4.720273 AGTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
4100 5186 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4101 5187 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4102 5188 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4103 5189 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4104 5190 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
4105 5191 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
4106 5192 7.715266 ATATATTTAGTACTCCCTCCGTTCC 57.285 40.000 0.00 0.00 0.00 3.62
4246 5338 4.202233 CCCTCCGTTCCTTCTTATAAGGTC 60.202 50.000 12.54 0.00 38.55 3.85
4347 5439 1.204941 GCTACCAGGTCTGACGATTGT 59.795 52.381 0.00 0.00 0.00 2.71
4352 5444 0.532573 ACATGCTACCAGGTCTGACG 59.467 55.000 0.00 0.00 28.14 4.35
4394 5486 4.537135 TCAGTTACTCTTTACTGCCCTG 57.463 45.455 0.00 0.00 41.16 4.45
4470 5678 1.211949 GCCTTACCACAGCCTCCAATA 59.788 52.381 0.00 0.00 0.00 1.90
4627 8678 8.152023 AGAACATCAGGTAACCTCTTAGATTT 57.848 34.615 0.00 0.00 37.17 2.17
4695 8757 3.624777 AGGGCATTCAGTGTTATCCAAG 58.375 45.455 0.00 0.00 0.00 3.61
4737 8816 7.677276 GCCATGAAGTGCAGTAACTATTTACAG 60.677 40.741 5.85 0.00 40.25 2.74
4799 12219 6.459024 GCAACCATACAGCGGATTTGTAATAA 60.459 38.462 0.00 0.00 34.92 1.40
4800 12220 5.008217 GCAACCATACAGCGGATTTGTAATA 59.992 40.000 0.00 0.00 34.92 0.98
4852 12273 6.186957 TCTGGCATAGTCATTGTTACCAAAT 58.813 36.000 0.00 0.00 33.44 2.32
5019 12459 7.479352 TGCATCCTTCAAAATTTCCTTGATA 57.521 32.000 0.00 0.00 32.98 2.15
5118 12558 3.831333 TGCATTGGTAGCAGAAAAATCCA 59.169 39.130 0.00 0.00 37.02 3.41
5304 12747 1.610522 CCCTTCGATTCATTGGCATCC 59.389 52.381 0.00 0.00 0.00 3.51
5398 12841 0.602562 CCTTTCGAATTGCTTGGCCA 59.397 50.000 0.00 0.00 0.00 5.36
5444 12887 2.080654 AGCTGGTCCTCAGATAGGTC 57.919 55.000 0.00 0.00 46.62 3.85
5488 12949 4.058817 ACCTTTCTAGTTTCTTCACGCAG 58.941 43.478 0.00 0.00 0.00 5.18
5546 13007 6.511282 CGTGAGTAACTTTTCAAGGGAAAGAC 60.511 42.308 4.09 0.00 43.47 3.01
5570 13031 2.954753 GAAAGCACGACTGGCCACG 61.955 63.158 13.76 13.76 0.00 4.94
5681 13267 8.638565 CAAAAACTTCTTATATTTTGCACGGAG 58.361 33.333 0.00 0.00 36.37 4.63
5682 13268 8.138712 ACAAAAACTTCTTATATTTTGCACGGA 58.861 29.630 9.11 0.00 43.22 4.69
5734 13333 6.461110 TTTACATACTACTACCTCTGTGCC 57.539 41.667 0.00 0.00 0.00 5.01
5735 13334 7.713750 TGATTTACATACTACTACCTCTGTGC 58.286 38.462 0.00 0.00 0.00 4.57
5736 13335 7.863375 GCTGATTTACATACTACTACCTCTGTG 59.137 40.741 0.00 0.00 0.00 3.66
5770 13369 6.153510 GGGAGGCTCAATCAAAAAGTAAAGAT 59.846 38.462 17.69 0.00 0.00 2.40
5772 13371 5.243730 TGGGAGGCTCAATCAAAAAGTAAAG 59.756 40.000 17.69 0.00 0.00 1.85
5857 13464 9.397280 TCCGTATGTTGTAATCCATTTGAAATA 57.603 29.630 0.00 0.00 0.00 1.40
5858 13465 8.287439 TCCGTATGTTGTAATCCATTTGAAAT 57.713 30.769 0.00 0.00 0.00 2.17
5859 13466 7.689446 TCCGTATGTTGTAATCCATTTGAAA 57.311 32.000 0.00 0.00 0.00 2.69
5862 13469 7.026631 ACATCCGTATGTTGTAATCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
5863 13470 8.783093 CATACATCCGTATGTTGTAATCCATTT 58.217 33.333 0.00 0.00 46.70 2.32
5907 13514 4.631813 ACGGAGCAAAATGAGTGATTCTAC 59.368 41.667 0.00 0.00 0.00 2.59
5912 13519 4.517285 ACATACGGAGCAAAATGAGTGAT 58.483 39.130 0.00 0.00 0.00 3.06
5951 13558 9.712305 CGTTCCCAAATATAAGTCATTCTAGAT 57.288 33.333 0.00 0.00 0.00 1.98
5952 13559 8.148351 CCGTTCCCAAATATAAGTCATTCTAGA 58.852 37.037 0.00 0.00 0.00 2.43
5953 13560 8.148351 TCCGTTCCCAAATATAAGTCATTCTAG 58.852 37.037 0.00 0.00 0.00 2.43
5954 13561 8.025270 TCCGTTCCCAAATATAAGTCATTCTA 57.975 34.615 0.00 0.00 0.00 2.10
5956 13563 6.204882 CCTCCGTTCCCAAATATAAGTCATTC 59.795 42.308 0.00 0.00 0.00 2.67
5959 13566 4.141574 CCCTCCGTTCCCAAATATAAGTCA 60.142 45.833 0.00 0.00 0.00 3.41
5968 13575 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5971 13578 3.172471 AGATATACTCCCTCCGTTCCC 57.828 52.381 0.00 0.00 0.00 3.97
5975 13582 9.629878 CATATAGTTAAGATATACTCCCTCCGT 57.370 37.037 0.00 0.00 0.00 4.69
5996 13603 5.069318 TCAATCCAAATGAAGCCGCATATA 58.931 37.500 0.00 0.00 0.00 0.86
6040 13647 3.091545 TGTTTCCAATCTGCCCAAGATC 58.908 45.455 0.00 0.00 45.37 2.75
6042 13649 2.627699 GTTGTTTCCAATCTGCCCAAGA 59.372 45.455 0.00 0.00 39.94 3.02
6084 13691 1.141449 GCAGCAGTGTTGGTTGCAA 59.859 52.632 9.18 0.00 42.67 4.08
6195 13802 4.637091 GGCATTGCAATTAATTTGAGGCTT 59.363 37.500 9.83 0.00 37.53 4.35
6205 13812 4.041444 AGAACCTTTGGGCATTGCAATTAA 59.959 37.500 9.83 0.25 35.63 1.40
6232 13839 2.480419 GCTGTTACGAGTCTTGCAATGT 59.520 45.455 0.00 0.00 0.00 2.71
6238 13845 3.997021 AGGAAATGCTGTTACGAGTCTTG 59.003 43.478 0.00 0.00 0.00 3.02
6240 13847 3.963428 AGGAAATGCTGTTACGAGTCT 57.037 42.857 0.00 0.00 0.00 3.24
6241 13848 4.691216 AGAAAGGAAATGCTGTTACGAGTC 59.309 41.667 0.00 0.00 0.00 3.36
6242 13849 4.452455 CAGAAAGGAAATGCTGTTACGAGT 59.548 41.667 0.00 0.00 0.00 4.18
6244 13851 3.751175 CCAGAAAGGAAATGCTGTTACGA 59.249 43.478 0.00 0.00 41.22 3.43
6245 13852 3.502211 ACCAGAAAGGAAATGCTGTTACG 59.498 43.478 0.00 0.00 41.22 3.18
6293 14008 7.461182 TTTTGTTAATCATACAAGGGGACAG 57.539 36.000 0.00 0.00 36.89 3.51
6355 14087 0.937304 CATACGGATTTCCAGCCACG 59.063 55.000 0.00 0.00 35.14 4.94
6356 14088 1.670811 CACATACGGATTTCCAGCCAC 59.329 52.381 0.00 0.00 35.14 5.01
6382 14114 2.295885 CTTTGCAATTTTTGTGGCCCA 58.704 42.857 0.00 0.00 0.00 5.36
6383 14115 2.296792 ACTTTGCAATTTTTGTGGCCC 58.703 42.857 0.00 0.00 0.00 5.80
6384 14116 3.873952 TGTACTTTGCAATTTTTGTGGCC 59.126 39.130 0.00 0.00 0.00 5.36
6385 14117 4.331168 TGTGTACTTTGCAATTTTTGTGGC 59.669 37.500 0.00 0.00 0.00 5.01
6387 14119 7.682824 TGATTGTGTACTTTGCAATTTTTGTG 58.317 30.769 0.00 0.00 33.56 3.33
6401 14173 5.560760 CGCATGTCAAAGTTGATTGTGTACT 60.561 40.000 0.00 0.00 39.73 2.73
6417 14189 2.236146 AGTAGTTGAATCCCGCATGTCA 59.764 45.455 0.00 0.00 0.00 3.58
6418 14190 2.866762 GAGTAGTTGAATCCCGCATGTC 59.133 50.000 0.00 0.00 0.00 3.06
6419 14191 2.420129 GGAGTAGTTGAATCCCGCATGT 60.420 50.000 0.00 0.00 0.00 3.21
6420 14192 2.213499 GGAGTAGTTGAATCCCGCATG 58.787 52.381 0.00 0.00 0.00 4.06
6423 14195 0.458669 TCGGAGTAGTTGAATCCCGC 59.541 55.000 0.00 0.00 37.13 6.13
6424 14196 2.022195 TCTCGGAGTAGTTGAATCCCG 58.978 52.381 4.69 0.00 38.41 5.14
6439 14220 5.572211 CAACATTGATTGTATTGGTCTCGG 58.428 41.667 0.00 0.00 37.68 4.63
6486 14268 3.515104 AGACATTTTGGCCTTGTATTGGG 59.485 43.478 3.32 0.00 0.00 4.12
6493 14275 3.749665 TTTGGAGACATTTTGGCCTTG 57.250 42.857 3.32 0.00 42.32 3.61
6494 14276 4.444733 CCTTTTTGGAGACATTTTGGCCTT 60.445 41.667 3.32 0.00 42.32 4.35
6495 14277 3.071457 CCTTTTTGGAGACATTTTGGCCT 59.929 43.478 3.32 0.00 42.32 5.19
6496 14278 3.402110 CCTTTTTGGAGACATTTTGGCC 58.598 45.455 0.00 0.00 42.32 5.36
6497 14279 2.807967 GCCTTTTTGGAGACATTTTGGC 59.192 45.455 0.00 0.00 42.32 4.52
6498 14280 3.059166 CGCCTTTTTGGAGACATTTTGG 58.941 45.455 0.00 0.00 42.32 3.28
6499 14281 3.059166 CCGCCTTTTTGGAGACATTTTG 58.941 45.455 0.00 0.00 42.32 2.44
6500 14282 2.962421 TCCGCCTTTTTGGAGACATTTT 59.038 40.909 0.00 0.00 42.32 1.82
6501 14283 2.296190 GTCCGCCTTTTTGGAGACATTT 59.704 45.455 0.00 0.00 42.32 2.32
6502 14284 1.886542 GTCCGCCTTTTTGGAGACATT 59.113 47.619 0.00 0.00 42.32 2.71
6503 14285 1.202879 TGTCCGCCTTTTTGGAGACAT 60.203 47.619 0.00 0.00 42.16 3.06
6504 14286 0.181587 TGTCCGCCTTTTTGGAGACA 59.818 50.000 0.00 0.00 43.67 3.41
6505 14287 0.591659 GTGTCCGCCTTTTTGGAGAC 59.408 55.000 0.00 0.00 40.74 3.36
6506 14288 0.882927 CGTGTCCGCCTTTTTGGAGA 60.883 55.000 0.00 0.00 37.90 3.71
6507 14289 1.164041 ACGTGTCCGCCTTTTTGGAG 61.164 55.000 0.00 0.00 37.70 3.86
6508 14290 0.106335 TACGTGTCCGCCTTTTTGGA 59.894 50.000 0.00 0.00 37.70 3.53
6509 14291 1.135803 CATACGTGTCCGCCTTTTTGG 60.136 52.381 0.00 0.00 37.70 3.28
6510 14292 1.533731 ACATACGTGTCCGCCTTTTTG 59.466 47.619 0.00 0.00 37.70 2.44
6511 14293 1.886886 ACATACGTGTCCGCCTTTTT 58.113 45.000 0.00 0.00 37.70 1.94
6512 14294 1.533731 CAACATACGTGTCCGCCTTTT 59.466 47.619 0.00 0.00 37.67 2.27
6513 14295 1.153353 CAACATACGTGTCCGCCTTT 58.847 50.000 0.00 0.00 37.67 3.11
6514 14296 0.034337 ACAACATACGTGTCCGCCTT 59.966 50.000 0.00 0.00 37.67 4.35
6515 14297 0.889994 TACAACATACGTGTCCGCCT 59.110 50.000 0.00 0.00 37.67 5.52
6516 14298 1.274596 CTACAACATACGTGTCCGCC 58.725 55.000 0.00 0.00 37.67 6.13
6517 14299 1.986698 ACTACAACATACGTGTCCGC 58.013 50.000 0.00 0.00 37.67 5.54
6518 14300 4.475028 TGTAACTACAACATACGTGTCCG 58.525 43.478 0.00 0.00 37.67 4.79
6519 14301 4.860907 CCTGTAACTACAACATACGTGTCC 59.139 45.833 0.00 0.00 37.67 4.02
6520 14302 4.860907 CCCTGTAACTACAACATACGTGTC 59.139 45.833 0.00 0.00 37.67 3.67
6521 14303 4.523943 TCCCTGTAACTACAACATACGTGT 59.476 41.667 0.00 0.00 41.28 4.49
6522 14304 5.063180 TCCCTGTAACTACAACATACGTG 57.937 43.478 0.00 0.00 35.50 4.49
6523 14305 4.381292 GCTCCCTGTAACTACAACATACGT 60.381 45.833 0.00 0.00 35.50 3.57
6524 14306 4.110482 GCTCCCTGTAACTACAACATACG 58.890 47.826 0.00 0.00 35.50 3.06
6525 14307 5.340439 AGCTCCCTGTAACTACAACATAC 57.660 43.478 0.00 0.00 35.50 2.39
6526 14308 4.404715 GGAGCTCCCTGTAACTACAACATA 59.595 45.833 23.19 0.00 35.50 2.29
6527 14309 3.197983 GGAGCTCCCTGTAACTACAACAT 59.802 47.826 23.19 0.00 35.50 2.71
6528 14310 2.565834 GGAGCTCCCTGTAACTACAACA 59.434 50.000 23.19 0.00 35.50 3.33
6529 14311 2.832733 AGGAGCTCCCTGTAACTACAAC 59.167 50.000 29.54 0.00 45.61 3.32
6530 14312 3.185880 AGGAGCTCCCTGTAACTACAA 57.814 47.619 29.54 0.00 45.61 2.41
6531 14313 2.921834 AGGAGCTCCCTGTAACTACA 57.078 50.000 29.54 0.00 45.61 2.74
6563 14345 3.723348 GAGCACAAACGGGCGTCC 61.723 66.667 0.00 0.00 34.54 4.79
6565 14347 4.250305 AGGAGCACAAACGGGCGT 62.250 61.111 0.00 0.00 34.54 5.68
6618 14402 0.249155 TTTTGCTGCTGCTGCTTGTC 60.249 50.000 27.67 3.96 40.48 3.18
6710 14497 1.279496 TTATCAGGTGGCTGCAGTCT 58.721 50.000 20.86 7.48 0.00 3.24
6711 14498 2.338577 ATTATCAGGTGGCTGCAGTC 57.661 50.000 12.53 12.53 0.00 3.51
6725 14512 9.042008 CACACAGTACCATTGGTAAGTATTATC 57.958 37.037 17.08 2.75 40.12 1.75
7034 14822 9.796120 AACTCGTGAACTTTTATGAAAATTGAA 57.204 25.926 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.