Multiple sequence alignment - TraesCS1B01G476600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G476600 chr1B 100.000 8128 0 0 1 8128 685295639 685287512 0.000000e+00 15010.0
1 TraesCS1B01G476600 chr1B 100.000 42 0 0 2783 2824 685292817 685292776 2.430000e-10 78.7
2 TraesCS1B01G476600 chr1B 100.000 42 0 0 2823 2864 685292857 685292816 2.430000e-10 78.7
3 TraesCS1B01G476600 chr1D 91.419 3193 187 44 3984 7142 492643412 492640273 0.000000e+00 4298.0
4 TraesCS1B01G476600 chr1D 86.768 922 63 28 7171 8073 492640271 492639390 0.000000e+00 972.0
5 TraesCS1B01G476600 chr1D 85.149 505 29 24 510 977 492645624 492645129 7.380000e-130 475.0
6 TraesCS1B01G476600 chr1D 85.915 355 34 9 3634 3981 492643818 492643473 1.670000e-96 364.0
7 TraesCS1B01G476600 chr1A 92.149 2662 137 33 5436 8073 591149323 591146710 0.000000e+00 3692.0
8 TraesCS1B01G476600 chr1A 90.582 1391 89 18 4010 5374 591151009 591149635 0.000000e+00 1805.0
9 TraesCS1B01G476600 chr1A 95.977 348 12 2 3634 3981 591151423 591151078 1.530000e-156 564.0
10 TraesCS1B01G476600 chr1A 83.108 592 49 25 776 1335 591152536 591151964 7.330000e-135 492.0
11 TraesCS1B01G476600 chr1A 93.467 199 6 5 506 701 591152931 591152737 1.030000e-73 289.0
12 TraesCS1B01G476600 chr3A 96.136 1501 40 5 1342 2824 144144172 144142672 0.000000e+00 2435.0
13 TraesCS1B01G476600 chr3A 96.794 811 26 0 2823 3633 144142713 144141903 0.000000e+00 1354.0
14 TraesCS1B01G476600 chr3A 85.193 493 71 2 5617 6108 360828392 360827901 9.410000e-139 505.0
15 TraesCS1B01G476600 chr3A 97.917 96 2 0 3537 3632 144146793 144146698 5.050000e-37 167.0
16 TraesCS1B01G476600 chr3A 96.907 97 3 0 3441 3537 144148645 144148549 6.530000e-36 163.0
17 TraesCS1B01G476600 chr5B 92.210 1489 109 2 1342 2824 60969449 60967962 0.000000e+00 2100.0
18 TraesCS1B01G476600 chr5B 91.019 412 37 0 2826 3237 60968000 60967589 2.560000e-154 556.0
19 TraesCS1B01G476600 chr5B 81.288 497 90 3 5613 6107 684611194 684611689 4.570000e-107 399.0
20 TraesCS1B01G476600 chr5B 78.352 522 100 12 6231 6744 684745780 684746296 7.870000e-85 326.0
21 TraesCS1B01G476600 chr5B 77.778 522 103 11 6231 6744 684772387 684771871 7.920000e-80 309.0
22 TraesCS1B01G476600 chr5B 95.570 158 7 0 3475 3632 61057452 61057295 3.770000e-63 254.0
23 TraesCS1B01G476600 chr5B 75.803 529 107 15 6375 6892 684656715 684656197 1.750000e-61 248.0
24 TraesCS1B01G476600 chr5B 93.182 88 6 0 4964 5051 684611050 684611137 6.620000e-26 130.0
25 TraesCS1B01G476600 chr5B 90.323 93 9 0 4959 5051 684089270 684089362 1.110000e-23 122.0
26 TraesCS1B01G476600 chrUn 90.980 510 40 6 1 506 229878111 229877604 0.000000e+00 682.0
27 TraesCS1B01G476600 chrUn 90.802 511 40 6 1 506 205941611 205941103 0.000000e+00 676.0
28 TraesCS1B01G476600 chrUn 90.748 508 44 3 1 506 270915879 270915373 0.000000e+00 675.0
29 TraesCS1B01G476600 chrUn 90.964 498 41 4 12 506 261349556 261349060 0.000000e+00 667.0
30 TraesCS1B01G476600 chrUn 90.354 508 45 4 1 506 193008896 193008391 0.000000e+00 664.0
31 TraesCS1B01G476600 chrUn 90.354 508 45 4 1 506 268124346 268123841 0.000000e+00 664.0
32 TraesCS1B01G476600 chrUn 90.763 498 42 4 12 506 192516949 192517445 0.000000e+00 662.0
33 TraesCS1B01G476600 chrUn 90.157 508 46 4 1 506 193028055 193027550 0.000000e+00 658.0
34 TraesCS1B01G476600 chrUn 90.157 508 47 3 1 506 252307874 252308380 0.000000e+00 658.0
35 TraesCS1B01G476600 chr3B 84.959 492 74 0 5617 6108 372243704 372243213 4.380000e-137 499.0
36 TraesCS1B01G476600 chr3B 77.037 405 86 7 2826 3226 770684275 770684676 8.210000e-55 226.0
37 TraesCS1B01G476600 chr3D 84.756 492 75 0 5617 6108 278447120 278447611 2.040000e-135 494.0
38 TraesCS1B01G476600 chr5D 82.129 498 84 5 5613 6107 543223939 543224434 9.750000e-114 422.0
39 TraesCS1B01G476600 chr5D 81.600 500 83 9 5613 6107 543214040 543214535 9.820000e-109 405.0
40 TraesCS1B01G476600 chr5D 77.365 592 121 12 6187 6769 543093635 543094222 1.010000e-88 339.0
41 TraesCS1B01G476600 chr5D 78.435 524 100 12 6231 6746 543272219 543272737 6.080000e-86 329.0
42 TraesCS1B01G476600 chr5D 76.093 389 89 4 2835 3221 329802686 329803072 4.970000e-47 200.0
43 TraesCS1B01G476600 chr5D 92.045 88 7 0 4964 5051 543213875 543213962 3.080000e-24 124.0
44 TraesCS1B01G476600 chr4A 81.162 499 87 7 5613 6107 626048939 626048444 2.130000e-105 394.0
45 TraesCS1B01G476600 chr4A 79.964 549 97 11 6209 6749 626013148 626012605 7.650000e-105 392.0
46 TraesCS1B01G476600 chr4A 77.138 538 104 14 6231 6757 625959469 625958940 2.220000e-75 294.0
47 TraesCS1B01G476600 chr4A 76.550 516 106 11 6231 6737 695806180 695806689 1.340000e-67 268.0
48 TraesCS1B01G476600 chr4A 92.045 88 7 0 4964 5051 626049104 626049017 3.080000e-24 124.0
49 TraesCS1B01G476600 chr4A 93.671 79 5 0 4965 5043 626013877 626013799 1.430000e-22 119.0
50 TraesCS1B01G476600 chr6D 88.824 170 9 4 3634 3796 406206848 406206682 4.970000e-47 200.0
51 TraesCS1B01G476600 chr6A 88.824 170 9 4 3634 3796 552744142 552743976 4.970000e-47 200.0
52 TraesCS1B01G476600 chr6B 86.471 170 13 4 3634 3796 610238754 610238588 2.330000e-40 178.0
53 TraesCS1B01G476600 chr7A 80.368 163 32 0 2840 3002 628903279 628903117 3.080000e-24 124.0
54 TraesCS1B01G476600 chr2D 78.125 192 35 6 2879 3067 596813994 596813807 1.850000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G476600 chr1B 685287512 685295639 8127 True 5055.80 15010 100.00000 1 8128 3 chr1B.!!$R1 8127
1 TraesCS1B01G476600 chr1D 492639390 492645624 6234 True 1527.25 4298 87.31275 510 8073 4 chr1D.!!$R1 7563
2 TraesCS1B01G476600 chr1A 591146710 591152931 6221 True 1368.40 3692 91.05660 506 8073 5 chr1A.!!$R1 7567
3 TraesCS1B01G476600 chr3A 144141903 144148645 6742 True 1029.75 2435 96.93850 1342 3633 4 chr3A.!!$R2 2291
4 TraesCS1B01G476600 chr5B 60967589 60969449 1860 True 1328.00 2100 91.61450 1342 3237 2 chr5B.!!$R4 1895
5 TraesCS1B01G476600 chr5B 684745780 684746296 516 False 326.00 326 78.35200 6231 6744 1 chr5B.!!$F2 513
6 TraesCS1B01G476600 chr5B 684771871 684772387 516 True 309.00 309 77.77800 6231 6744 1 chr5B.!!$R3 513
7 TraesCS1B01G476600 chr5B 684611050 684611689 639 False 264.50 399 87.23500 4964 6107 2 chr5B.!!$F3 1143
8 TraesCS1B01G476600 chr5B 684656197 684656715 518 True 248.00 248 75.80300 6375 6892 1 chr5B.!!$R2 517
9 TraesCS1B01G476600 chrUn 229877604 229878111 507 True 682.00 682 90.98000 1 506 1 chrUn.!!$R4 505
10 TraesCS1B01G476600 chrUn 205941103 205941611 508 True 676.00 676 90.80200 1 506 1 chrUn.!!$R3 505
11 TraesCS1B01G476600 chrUn 270915373 270915879 506 True 675.00 675 90.74800 1 506 1 chrUn.!!$R7 505
12 TraesCS1B01G476600 chrUn 193008391 193008896 505 True 664.00 664 90.35400 1 506 1 chrUn.!!$R1 505
13 TraesCS1B01G476600 chrUn 268123841 268124346 505 True 664.00 664 90.35400 1 506 1 chrUn.!!$R6 505
14 TraesCS1B01G476600 chrUn 193027550 193028055 505 True 658.00 658 90.15700 1 506 1 chrUn.!!$R2 505
15 TraesCS1B01G476600 chrUn 252307874 252308380 506 False 658.00 658 90.15700 1 506 1 chrUn.!!$F2 505
16 TraesCS1B01G476600 chr5D 543093635 543094222 587 False 339.00 339 77.36500 6187 6769 1 chr5D.!!$F2 582
17 TraesCS1B01G476600 chr5D 543272219 543272737 518 False 329.00 329 78.43500 6231 6746 1 chr5D.!!$F4 515
18 TraesCS1B01G476600 chr5D 543213875 543214535 660 False 264.50 405 86.82250 4964 6107 2 chr5D.!!$F5 1143
19 TraesCS1B01G476600 chr4A 625958940 625959469 529 True 294.00 294 77.13800 6231 6757 1 chr4A.!!$R1 526
20 TraesCS1B01G476600 chr4A 695806180 695806689 509 False 268.00 268 76.55000 6231 6737 1 chr4A.!!$F1 506
21 TraesCS1B01G476600 chr4A 626048444 626049104 660 True 259.00 394 86.60350 4964 6107 2 chr4A.!!$R3 1143
22 TraesCS1B01G476600 chr4A 626012605 626013877 1272 True 255.50 392 86.81750 4965 6749 2 chr4A.!!$R2 1784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 623 0.322456 GCTACACCATCAACCTGGCA 60.322 55.000 0.00 0.00 40.15 4.92 F
1038 1176 0.338814 TCTCCAAGGTACTCCCTCCC 59.661 60.000 0.00 0.00 45.47 4.30 F
1039 1177 0.340208 CTCCAAGGTACTCCCTCCCT 59.660 60.000 0.00 0.00 45.47 4.20 F
1329 1896 1.073216 CGAATCTCGCGAGTGCAACT 61.073 55.000 33.33 13.83 41.93 3.16 F
2843 6000 1.741770 CTTCAGGCGGGTGCAGTAC 60.742 63.158 0.00 0.00 45.35 2.73 F
4412 7705 0.460459 GGTCTTTACTGCCTCGCCTC 60.460 60.000 0.00 0.00 0.00 4.70 F
4448 7741 1.268743 GCAAGACACAAACCTGCTGTC 60.269 52.381 0.00 0.00 35.53 3.51 F
4998 8309 2.025981 TGATGTCAAGGGGGTTGATGAG 60.026 50.000 0.00 0.00 46.99 2.90 F
5420 8774 0.179124 TTTGAAGTGTTTGCGCACCC 60.179 50.000 11.12 3.56 40.04 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 5192 1.606601 CTGGGTCCTCGACACTGGA 60.607 63.158 0.00 0.00 36.82 3.86 R
2839 5996 0.697079 TCTGACCGTCCTGGAGTACT 59.303 55.000 0.00 0.00 42.00 2.73 R
2842 5999 1.032657 CGATCTGACCGTCCTGGAGT 61.033 60.000 0.00 0.00 42.00 3.85 R
2848 6005 1.519455 CAAGGCGATCTGACCGTCC 60.519 63.158 0.00 0.00 31.06 4.79 R
4441 7734 0.234106 CGCACTTGAACAGACAGCAG 59.766 55.000 0.00 0.00 0.00 4.24 R
5407 8761 0.318360 GTAAAGGGGTGCGCAAACAC 60.318 55.000 14.00 10.09 39.94 3.32 R
5408 8762 0.466555 AGTAAAGGGGTGCGCAAACA 60.467 50.000 14.00 0.00 0.00 2.83 R
6338 9934 0.713883 CGAGGTCGGTCATTGAAACG 59.286 55.000 5.85 5.85 35.37 3.60 R
7350 10958 0.035725 CTCCTTGGCATGACTCAGCA 60.036 55.000 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.976864 ACTATTACTCACCGTTTTTGGGT 58.023 39.130 0.00 0.00 38.65 4.51
145 149 0.953960 GATTCTGGCCCGTTTCGTGT 60.954 55.000 0.00 0.00 0.00 4.49
169 173 6.834168 ACTATTACTCATTGTTTTGGGGTG 57.166 37.500 0.00 0.00 0.00 4.61
172 176 1.047002 CTCATTGTTTTGGGGTGCCA 58.953 50.000 0.00 0.00 0.00 4.92
182 186 0.482446 TGGGGTGCCAGAGTGATTTT 59.518 50.000 0.00 0.00 0.00 1.82
265 269 0.682852 TTCTGACCCGTTTCGTGGAT 59.317 50.000 4.33 0.00 0.00 3.41
289 293 3.801068 CTCACCGTTTTGGGGCCCA 62.801 63.158 24.76 24.76 42.91 5.36
320 324 7.598493 CGATTTTCATAGTTGTTGAAACCCAAT 59.402 33.333 0.00 0.00 41.45 3.16
345 349 2.662637 CGCTTACGTGTCGGTTATCAAA 59.337 45.455 0.00 0.00 33.53 2.69
361 365 6.705825 GGTTATCAAAAATCACAGTTTTGGCT 59.294 34.615 8.76 1.68 43.22 4.75
404 408 4.918588 ACTATTACTCACTGTTTTGGGGG 58.081 43.478 0.00 0.00 0.00 5.40
433 437 5.526010 GTGATTTCCACGATTAACGAACT 57.474 39.130 0.00 0.00 45.77 3.01
439 443 2.094390 CCACGATTAACGAACTCTGGGA 60.094 50.000 0.00 0.00 45.77 4.37
458 462 2.223180 GGATGCGTTTATGTTTCGGTCC 60.223 50.000 0.00 0.00 0.00 4.46
501 506 0.682852 TTCTGACCCGTTTCGTGGAT 59.317 50.000 4.33 0.00 0.00 3.41
562 568 8.341903 CAATGTAGTTTCCCAAACCAAATTTTC 58.658 33.333 0.00 0.00 42.34 2.29
617 623 0.322456 GCTACACCATCAACCTGGCA 60.322 55.000 0.00 0.00 40.15 4.92
618 624 1.683011 GCTACACCATCAACCTGGCAT 60.683 52.381 0.00 0.00 40.15 4.40
827 962 2.361230 CCCGGCCCAGGAAAGAAC 60.361 66.667 0.00 0.00 0.00 3.01
829 964 2.345991 CGGCCCAGGAAAGAACGA 59.654 61.111 0.00 0.00 0.00 3.85
1034 1172 1.338890 GCCCTCTCCAAGGTACTCCC 61.339 65.000 0.00 0.00 44.56 4.30
1036 1174 1.689892 CCCTCTCCAAGGTACTCCCTC 60.690 61.905 0.00 0.00 45.47 4.30
1037 1175 1.689892 CCTCTCCAAGGTACTCCCTCC 60.690 61.905 0.00 0.00 45.47 4.30
1038 1176 0.338814 TCTCCAAGGTACTCCCTCCC 59.661 60.000 0.00 0.00 45.47 4.30
1039 1177 0.340208 CTCCAAGGTACTCCCTCCCT 59.660 60.000 0.00 0.00 45.47 4.20
1080 1611 1.227292 GATTCCTCTTCCGTCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
1241 1792 1.348064 CCCCCGCAATAGATAGACCA 58.652 55.000 0.00 0.00 0.00 4.02
1243 1794 1.336887 CCCCGCAATAGATAGACCACG 60.337 57.143 0.00 0.00 0.00 4.94
1245 1796 1.611977 CCGCAATAGATAGACCACGGA 59.388 52.381 0.00 0.00 41.86 4.69
1248 1799 3.501062 CGCAATAGATAGACCACGGAGTA 59.499 47.826 0.00 0.00 41.61 2.59
1250 1801 4.760715 GCAATAGATAGACCACGGAGTAGA 59.239 45.833 0.00 0.00 41.61 2.59
1251 1802 5.416326 GCAATAGATAGACCACGGAGTAGAT 59.584 44.000 0.00 0.00 41.61 1.98
1252 1803 6.403855 GCAATAGATAGACCACGGAGTAGATC 60.404 46.154 0.00 0.00 41.61 2.75
1329 1896 1.073216 CGAATCTCGCGAGTGCAACT 61.073 55.000 33.33 13.83 41.93 3.16
1377 4510 7.335422 GGCATGAAAAGAGAGAAGAACAGAATA 59.665 37.037 0.00 0.00 0.00 1.75
1378 4511 8.891720 GCATGAAAAGAGAGAAGAACAGAATAT 58.108 33.333 0.00 0.00 0.00 1.28
2668 5825 3.699894 CTCGGCAGAGGCACCTGT 61.700 66.667 5.89 0.00 43.71 4.00
2828 5985 2.956964 CGGTCAGATCGCCGCTTC 60.957 66.667 12.06 0.00 41.53 3.86
2829 5986 2.184322 GGTCAGATCGCCGCTTCA 59.816 61.111 0.00 0.00 0.00 3.02
2830 5987 1.880340 GGTCAGATCGCCGCTTCAG 60.880 63.158 0.00 0.00 0.00 3.02
2831 5988 1.880340 GTCAGATCGCCGCTTCAGG 60.880 63.158 0.00 0.00 0.00 3.86
2842 5999 2.662596 CTTCAGGCGGGTGCAGTA 59.337 61.111 0.00 0.00 45.35 2.74
2843 6000 1.741770 CTTCAGGCGGGTGCAGTAC 60.742 63.158 0.00 0.00 45.35 2.73
2844 6001 2.172483 CTTCAGGCGGGTGCAGTACT 62.172 60.000 0.00 0.00 45.35 2.73
2845 6002 2.125512 CAGGCGGGTGCAGTACTC 60.126 66.667 0.00 0.00 45.35 2.59
2846 6003 3.391382 AGGCGGGTGCAGTACTCC 61.391 66.667 0.00 0.00 45.35 3.85
2847 6004 3.702048 GGCGGGTGCAGTACTCCA 61.702 66.667 0.00 0.00 45.35 3.86
2848 6005 2.125512 GCGGGTGCAGTACTCCAG 60.126 66.667 0.00 0.00 42.15 3.86
2849 6006 2.579201 CGGGTGCAGTACTCCAGG 59.421 66.667 0.00 0.00 33.29 4.45
2850 6007 1.982395 CGGGTGCAGTACTCCAGGA 60.982 63.158 0.00 0.00 33.29 3.86
2851 6008 1.597461 GGGTGCAGTACTCCAGGAC 59.403 63.158 0.00 0.00 33.29 3.85
2852 6009 1.215647 GGTGCAGTACTCCAGGACG 59.784 63.158 0.00 0.00 31.85 4.79
2853 6010 1.215647 GTGCAGTACTCCAGGACGG 59.784 63.158 0.00 0.00 0.00 4.79
2854 6011 1.228769 TGCAGTACTCCAGGACGGT 60.229 57.895 0.00 0.00 35.57 4.83
2855 6012 1.248785 TGCAGTACTCCAGGACGGTC 61.249 60.000 0.00 0.00 35.57 4.79
2856 6013 1.248785 GCAGTACTCCAGGACGGTCA 61.249 60.000 10.76 0.00 35.57 4.02
2857 6014 0.811915 CAGTACTCCAGGACGGTCAG 59.188 60.000 10.76 1.05 35.57 3.51
2858 6015 0.697079 AGTACTCCAGGACGGTCAGA 59.303 55.000 10.76 2.77 35.57 3.27
2859 6016 1.285373 AGTACTCCAGGACGGTCAGAT 59.715 52.381 10.76 0.00 35.57 2.90
2860 6017 1.677052 GTACTCCAGGACGGTCAGATC 59.323 57.143 10.76 0.00 35.57 2.75
2861 6018 1.032657 ACTCCAGGACGGTCAGATCG 61.033 60.000 10.76 0.09 35.57 3.69
2862 6019 2.105128 CCAGGACGGTCAGATCGC 59.895 66.667 10.76 0.00 0.00 4.58
2863 6020 2.105128 CAGGACGGTCAGATCGCC 59.895 66.667 10.76 5.71 0.00 5.54
2864 6021 2.043852 AGGACGGTCAGATCGCCT 60.044 61.111 10.76 11.89 32.41 5.52
3119 6276 1.882311 GCCGAACATGCCAATGACA 59.118 52.632 0.00 0.00 37.24 3.58
3229 6386 3.803162 GGAGGCAGGGAAGGAGGC 61.803 72.222 0.00 0.00 0.00 4.70
3402 6559 2.125512 CGGAAGCGGAGGAACCAG 60.126 66.667 0.00 0.00 38.90 4.00
3653 6881 4.612264 ATTTGGACTCATGCTGCTTTTT 57.388 36.364 0.00 0.00 0.00 1.94
3680 6908 5.818136 TGCAATAGAGCTTGGTATGTTTC 57.182 39.130 0.00 0.00 34.99 2.78
3720 6955 4.716287 TCCATGAGTCACCTGATATGTGAA 59.284 41.667 0.00 0.00 43.82 3.18
3741 6976 9.952030 TGTGAATAACCTTGTGTAATATCTTGA 57.048 29.630 0.00 0.00 0.00 3.02
3803 7038 4.119862 TCTTTATGCCTGTCGCTATTGAC 58.880 43.478 0.00 0.00 38.78 3.18
3835 7070 2.685388 TCAACTCAAACGTTGATTGCCA 59.315 40.909 0.00 0.00 45.92 4.92
3970 7205 0.548989 TCCCTCCCTCTCTCTCTTCG 59.451 60.000 0.00 0.00 0.00 3.79
3981 7216 4.200874 TCTCTCTCTTCGAAGGACATACC 58.799 47.826 24.37 0.00 39.35 2.73
4028 7321 6.626302 TGAGTGTTTCCCTTTGTGTAAAAAG 58.374 36.000 0.00 0.00 36.99 2.27
4031 7324 5.872617 GTGTTTCCCTTTGTGTAAAAAGCTT 59.127 36.000 0.00 0.00 36.10 3.74
4063 7356 3.726557 ATTCCAGGTCTCATGCTTCAA 57.273 42.857 0.00 0.00 0.00 2.69
4103 7396 6.491403 AGAAATCCTACTGTTTGCAAACTGAT 59.509 34.615 39.33 28.79 39.36 2.90
4128 7421 4.277476 TGGGTGTTCTAATTAATGCAGGG 58.723 43.478 0.00 0.00 0.00 4.45
4141 7434 2.038863 TGCAGGGGGAGTTCTTAAGA 57.961 50.000 0.00 0.00 0.00 2.10
4317 7610 1.917872 ACAACTCTTCGGCTCTCTCT 58.082 50.000 0.00 0.00 0.00 3.10
4338 7631 4.284490 TCTCAGTATGTGAAGGCTCTTGTT 59.716 41.667 0.00 0.00 35.42 2.83
4383 7676 1.199789 CCGCTGCTTAAGACATTGCAA 59.800 47.619 6.67 0.00 34.90 4.08
4398 7691 3.857157 TTGCAAAGAGGTAGTGGTCTT 57.143 42.857 0.00 0.00 34.37 3.01
4408 7701 2.416972 GGTAGTGGTCTTTACTGCCTCG 60.417 54.545 5.22 0.00 44.49 4.63
4410 7703 1.019805 GTGGTCTTTACTGCCTCGCC 61.020 60.000 0.00 0.00 0.00 5.54
4412 7705 0.460459 GGTCTTTACTGCCTCGCCTC 60.460 60.000 0.00 0.00 0.00 4.70
4415 7708 1.555075 TCTTTACTGCCTCGCCTCAAT 59.445 47.619 0.00 0.00 0.00 2.57
4420 7713 1.486310 ACTGCCTCGCCTCAATTGATA 59.514 47.619 8.96 0.00 0.00 2.15
4426 7719 4.320057 GCCTCGCCTCAATTGATAGATTTG 60.320 45.833 8.96 0.00 0.00 2.32
4428 7721 5.277683 CCTCGCCTCAATTGATAGATTTGTG 60.278 44.000 8.96 0.00 0.00 3.33
4429 7722 4.035558 TCGCCTCAATTGATAGATTTGTGC 59.964 41.667 8.96 1.22 0.00 4.57
4430 7723 4.201940 CGCCTCAATTGATAGATTTGTGCA 60.202 41.667 8.96 0.00 0.00 4.57
4431 7724 5.653507 GCCTCAATTGATAGATTTGTGCAA 58.346 37.500 8.96 0.00 0.00 4.08
4432 7725 5.747197 GCCTCAATTGATAGATTTGTGCAAG 59.253 40.000 8.96 0.00 0.00 4.01
4433 7726 6.405065 GCCTCAATTGATAGATTTGTGCAAGA 60.405 38.462 8.96 0.00 0.00 3.02
4434 7727 6.971184 CCTCAATTGATAGATTTGTGCAAGAC 59.029 38.462 8.96 0.00 0.00 3.01
4435 7728 7.362315 CCTCAATTGATAGATTTGTGCAAGACA 60.362 37.037 8.96 0.00 0.00 3.41
4448 7741 1.268743 GCAAGACACAAACCTGCTGTC 60.269 52.381 0.00 0.00 35.53 3.51
4469 7762 2.143122 TGTTCAAGTGCGTCCTTCATC 58.857 47.619 0.00 0.00 0.00 2.92
4485 7778 3.326836 TCATCCAACGCACTGAACATA 57.673 42.857 0.00 0.00 0.00 2.29
4495 7788 5.479306 ACGCACTGAACATAATACTGTCTT 58.521 37.500 0.00 0.00 0.00 3.01
4500 7793 9.760660 GCACTGAACATAATACTGTCTTTTTAG 57.239 33.333 0.00 0.00 0.00 1.85
4507 7800 9.959721 ACATAATACTGTCTTTTTAGGACACAT 57.040 29.630 0.00 0.00 38.57 3.21
4513 7812 8.608844 ACTGTCTTTTTAGGACACATCTTTAG 57.391 34.615 0.00 0.00 38.57 1.85
4546 7845 7.803189 GGTTTCTTTTATGATATACACATGCCG 59.197 37.037 0.00 0.00 0.00 5.69
4550 7860 9.549078 TCTTTTATGATATACACATGCCGTTTA 57.451 29.630 0.00 0.00 0.00 2.01
4568 7878 7.443879 TGCCGTTTATGCTCTCATATTTTGATA 59.556 33.333 0.00 0.00 35.30 2.15
4605 7915 4.759693 TGATCTAAACACGCAGGAATTGTT 59.240 37.500 0.00 0.00 34.92 2.83
4662 7972 2.102925 CCCAGCATTTCAAAGTGTTGGT 59.897 45.455 16.16 0.00 42.91 3.67
4668 7978 4.496673 GCATTTCAAAGTGTTGGTCGTACA 60.497 41.667 0.00 0.00 35.29 2.90
4704 8014 2.742372 GGTACTGCTGGTGCACCG 60.742 66.667 30.07 24.12 45.31 4.94
4728 8038 2.038820 TCACATGGTTGCATCAGAGACA 59.961 45.455 0.00 0.00 0.00 3.41
4764 8074 2.396157 GCTTTGGCGTACCTTCCGG 61.396 63.158 0.00 0.00 36.63 5.14
4794 8104 5.717178 TGCACTCACTTTCCTAGTAATCTCT 59.283 40.000 0.00 0.00 34.56 3.10
4845 8155 9.232473 AGAGGAATTAGTAAAGGTTTGTCATTC 57.768 33.333 0.00 0.00 0.00 2.67
4851 8161 8.918202 TTAGTAAAGGTTTGTCATTCTGATGT 57.082 30.769 0.00 0.00 34.77 3.06
4853 8163 8.553459 AGTAAAGGTTTGTCATTCTGATGTAG 57.447 34.615 0.00 0.00 34.77 2.74
4854 8164 6.824305 AAAGGTTTGTCATTCTGATGTAGG 57.176 37.500 0.00 0.00 34.77 3.18
4855 8165 5.762179 AGGTTTGTCATTCTGATGTAGGA 57.238 39.130 0.00 0.00 34.77 2.94
4856 8166 6.319048 AGGTTTGTCATTCTGATGTAGGAT 57.681 37.500 0.00 0.00 34.77 3.24
4857 8167 6.118170 AGGTTTGTCATTCTGATGTAGGATG 58.882 40.000 0.00 0.00 42.85 3.51
4859 8169 4.077300 TGTCATTCTGATGTAGGATGGC 57.923 45.455 0.00 0.00 45.62 4.40
4860 8170 3.713248 TGTCATTCTGATGTAGGATGGCT 59.287 43.478 1.93 0.00 45.62 4.75
4861 8171 4.901250 TGTCATTCTGATGTAGGATGGCTA 59.099 41.667 1.93 0.00 45.62 3.93
4862 8172 5.545335 TGTCATTCTGATGTAGGATGGCTAT 59.455 40.000 1.93 0.00 45.62 2.97
4863 8173 6.725834 TGTCATTCTGATGTAGGATGGCTATA 59.274 38.462 1.93 0.00 45.62 1.31
4864 8174 7.401204 TGTCATTCTGATGTAGGATGGCTATAT 59.599 37.037 1.93 0.00 45.62 0.86
4865 8175 7.925483 GTCATTCTGATGTAGGATGGCTATATC 59.075 40.741 0.00 0.00 42.69 1.63
4866 8176 7.620888 TCATTCTGATGTAGGATGGCTATATCA 59.379 37.037 0.00 0.00 41.94 2.15
4882 8193 8.262933 TGGCTATATCATGATCCTTATTCAGTG 58.737 37.037 12.53 0.00 0.00 3.66
4883 8194 8.263640 GGCTATATCATGATCCTTATTCAGTGT 58.736 37.037 12.53 0.00 0.00 3.55
4885 8196 9.513727 CTATATCATGATCCTTATTCAGTGTCG 57.486 37.037 12.53 0.00 0.00 4.35
4895 8206 3.895232 ATTCAGTGTCGGCAGTAATCT 57.105 42.857 0.00 0.00 0.00 2.40
4906 8217 5.688176 GTCGGCAGTAATCTCTATTGACTTC 59.312 44.000 0.00 0.00 0.00 3.01
4907 8218 5.359860 TCGGCAGTAATCTCTATTGACTTCA 59.640 40.000 0.00 0.00 0.00 3.02
4929 8240 5.716228 TCAAATTATATATGCAGGCCTTGGG 59.284 40.000 0.00 0.00 0.00 4.12
4998 8309 2.025981 TGATGTCAAGGGGGTTGATGAG 60.026 50.000 0.00 0.00 46.99 2.90
5056 8367 3.003480 CGAGATCCCAAGGTGAAGTTTC 58.997 50.000 0.00 0.00 0.00 2.78
5065 8376 4.453819 CCAAGGTGAAGTTTCATCACTCTC 59.546 45.833 7.78 0.00 45.13 3.20
5069 8380 3.999663 GTGAAGTTTCATCACTCTCCTGG 59.000 47.826 0.00 0.00 43.03 4.45
5090 8401 3.694566 GGTTCCATCCACCAGTGAATTAC 59.305 47.826 0.00 0.00 34.04 1.89
5116 8427 7.441157 CGAAGATATTAACAGCTGGGTAATGAA 59.559 37.037 24.46 12.97 0.00 2.57
5120 8431 8.823220 ATATTAACAGCTGGGTAATGAAACTT 57.177 30.769 24.46 8.50 0.00 2.66
5121 8432 9.914834 ATATTAACAGCTGGGTAATGAAACTTA 57.085 29.630 24.46 10.93 0.00 2.24
5128 8439 8.184192 CAGCTGGGTAATGAAACTTATAAACAG 58.816 37.037 5.57 0.00 0.00 3.16
5143 8461 9.198475 ACTTATAAACAGATATATCTACCCCGG 57.802 37.037 14.92 4.63 34.85 5.73
5193 8512 5.356882 TGCTGTGCTGTACTGAAATTTAC 57.643 39.130 3.61 0.00 0.00 2.01
5254 8573 9.277783 GGTCTGCTACATGATAAATTGATACTT 57.722 33.333 0.00 0.00 0.00 2.24
5381 8700 9.262358 ACTCGATAAATGATAAAAGCTACTTCC 57.738 33.333 0.00 0.00 0.00 3.46
5407 8761 3.057666 GCTCTCCTGCCTTTCTTTTGAAG 60.058 47.826 0.00 0.00 39.88 3.02
5408 8762 4.140536 CTCTCCTGCCTTTCTTTTGAAGT 58.859 43.478 0.00 0.00 39.88 3.01
5417 8771 2.929531 TCTTTTGAAGTGTTTGCGCA 57.070 40.000 5.66 5.66 0.00 6.09
5418 8772 2.525055 TCTTTTGAAGTGTTTGCGCAC 58.475 42.857 11.12 0.00 39.51 5.34
5420 8774 0.179124 TTTGAAGTGTTTGCGCACCC 60.179 50.000 11.12 3.56 40.04 4.61
5435 8789 2.510613 GCACCCCTTTACTTTGTAGCA 58.489 47.619 0.00 0.00 0.00 3.49
5440 8794 3.939592 CCCCTTTACTTTGTAGCAGTAGC 59.060 47.826 0.00 0.00 42.56 3.58
5454 9024 9.667107 TTGTAGCAGTAGCATTTTAAGTCTTAT 57.333 29.630 0.00 0.00 45.49 1.73
5504 9074 3.921119 TTGTCATGACATTGTGCCTTC 57.079 42.857 28.32 0.00 41.52 3.46
5510 9080 5.049828 TCATGACATTGTGCCTTCTATACG 58.950 41.667 0.00 0.00 0.00 3.06
5556 9126 6.603237 AAACCAAGTTTTGCTTAAAGATGC 57.397 33.333 0.00 0.00 35.27 3.91
5596 9190 9.137459 TGTGATGTTCCCTTGTTCTTTTATAAA 57.863 29.630 0.00 0.00 0.00 1.40
5965 9559 5.072741 GGCTTTAAGCAGAATGATGGGATA 58.927 41.667 19.10 0.00 44.75 2.59
6001 9595 1.133792 ACAAACTTCCCCCAGTCACTG 60.134 52.381 0.00 0.00 0.00 3.66
6028 9622 2.438434 CTTGTTAGGCCTGGGCGG 60.438 66.667 17.99 0.00 43.06 6.13
6076 9670 2.264794 GATGTTGAGGGCCGACGT 59.735 61.111 0.00 0.00 31.55 4.34
6118 9712 9.177608 CATATGTCAAAGGTAAAGAATCCTTCA 57.822 33.333 0.00 0.00 42.38 3.02
6224 9820 2.032799 TGAACTGCAGGTGTTAAAAGCG 59.967 45.455 19.93 0.00 0.00 4.68
6926 10534 4.500116 GAGCGCGAGACCCTCACC 62.500 72.222 12.10 0.00 0.00 4.02
6959 10567 0.034059 AGAACCTTCTGTCGCAGGTG 59.966 55.000 6.95 1.68 43.05 4.00
7109 10717 0.959372 CAGCTCAAGCCAAGGGAGTG 60.959 60.000 0.00 0.00 43.38 3.51
7153 10761 0.443869 CGGGCAACAAGAGAACATCG 59.556 55.000 0.00 0.00 39.74 3.84
7154 10762 1.523758 GGGCAACAAGAGAACATCGT 58.476 50.000 0.00 0.00 39.74 3.73
7155 10763 1.464997 GGGCAACAAGAGAACATCGTC 59.535 52.381 0.00 0.00 39.74 4.20
7158 10766 3.189287 GGCAACAAGAGAACATCGTCAAT 59.811 43.478 0.00 0.00 0.00 2.57
7192 10800 4.570369 GCCATTAATTAGCATGCCGTTTTT 59.430 37.500 15.66 4.21 0.00 1.94
7313 10921 1.674441 CTGTTGGTATGATGCAGCCTG 59.326 52.381 0.00 0.00 0.00 4.85
7314 10922 1.281577 TGTTGGTATGATGCAGCCTGA 59.718 47.619 0.00 0.00 0.00 3.86
7315 10923 2.290832 TGTTGGTATGATGCAGCCTGAA 60.291 45.455 0.00 0.00 0.00 3.02
7350 10958 0.481567 CCATTCATGGCAGGGGATCT 59.518 55.000 0.00 0.00 41.75 2.75
7362 10970 0.534652 GGGGATCTGCTGAGTCATGC 60.535 60.000 0.00 0.20 0.00 4.06
7421 11029 6.366061 CCTCTTATCATTTGATCGTTGCGATA 59.634 38.462 3.92 0.00 47.00 2.92
7425 11033 5.733226 TCATTTGATCGTTGCGATACATT 57.267 34.783 3.92 0.00 47.00 2.71
7426 11034 5.500825 TCATTTGATCGTTGCGATACATTG 58.499 37.500 3.92 1.94 47.00 2.82
7480 11094 3.632145 TCGGTTATACTCCGGTTTAGACC 59.368 47.826 0.00 3.51 46.82 3.85
7540 11157 0.333993 AGCTCACCAGGAATGGCATT 59.666 50.000 13.54 13.54 0.00 3.56
7542 11159 1.843368 CTCACCAGGAATGGCATTGT 58.157 50.000 19.07 6.26 0.00 2.71
7543 11160 1.475280 CTCACCAGGAATGGCATTGTG 59.525 52.381 19.07 18.18 0.00 3.33
7544 11161 0.533491 CACCAGGAATGGCATTGTGG 59.467 55.000 26.08 26.08 0.00 4.17
7545 11162 0.409092 ACCAGGAATGGCATTGTGGA 59.591 50.000 31.09 0.00 30.81 4.02
7546 11163 1.007479 ACCAGGAATGGCATTGTGGAT 59.993 47.619 31.09 18.86 30.81 3.41
7547 11164 1.684983 CCAGGAATGGCATTGTGGATC 59.315 52.381 24.60 8.78 0.00 3.36
7549 11166 2.963101 CAGGAATGGCATTGTGGATCAT 59.037 45.455 19.07 0.00 0.00 2.45
7551 11168 2.036733 GGAATGGCATTGTGGATCATGG 59.963 50.000 19.07 0.00 0.00 3.66
7552 11169 1.045407 ATGGCATTGTGGATCATGGC 58.955 50.000 9.59 9.59 39.62 4.40
7554 11171 0.757935 GGCATTGTGGATCATGGCCT 60.758 55.000 3.32 0.00 40.30 5.19
7555 11172 0.387929 GCATTGTGGATCATGGCCTG 59.612 55.000 3.32 0.00 0.00 4.85
7556 11173 1.037493 CATTGTGGATCATGGCCTGG 58.963 55.000 3.32 0.00 0.00 4.45
7557 11174 0.632835 ATTGTGGATCATGGCCTGGT 59.367 50.000 3.32 0.00 0.00 4.00
7558 11175 1.294041 TTGTGGATCATGGCCTGGTA 58.706 50.000 3.32 0.00 0.00 3.25
7559 11176 1.294041 TGTGGATCATGGCCTGGTAA 58.706 50.000 3.32 0.00 0.00 2.85
7566 11185 2.116238 TCATGGCCTGGTAAGTACTCC 58.884 52.381 3.32 0.00 0.00 3.85
7578 11197 4.687948 GGTAAGTACTCCGTTGTTTCCTTC 59.312 45.833 0.00 0.00 0.00 3.46
7586 11207 5.163332 ACTCCGTTGTTTCCTTCCTATATCC 60.163 44.000 0.00 0.00 0.00 2.59
7607 11228 3.003068 CCGCATGGAGATTGATTCTTGAC 59.997 47.826 0.00 0.00 37.49 3.18
7623 11244 0.804364 TGACGCAATTGCATCAGGTC 59.196 50.000 24.14 22.57 38.41 3.85
7651 11273 6.096987 TGCTGGTGTTGATGTTTTTACCTTTA 59.903 34.615 0.00 0.00 0.00 1.85
7653 11275 7.655732 GCTGGTGTTGATGTTTTTACCTTTAAT 59.344 33.333 0.00 0.00 0.00 1.40
7654 11276 8.879342 TGGTGTTGATGTTTTTACCTTTAATG 57.121 30.769 0.00 0.00 0.00 1.90
7744 11368 4.935352 TGTCTCCAAAATTTGTGGAAGG 57.065 40.909 9.60 0.00 44.55 3.46
7754 11378 7.444792 CCAAAATTTGTGGAAGGATGAATGAAA 59.555 33.333 0.00 0.00 38.54 2.69
7793 11417 4.436998 CTGGTCGGTGGGCTCGTC 62.437 72.222 0.00 0.00 0.00 4.20
7820 11444 5.299028 AGGGTTTGGATTTGTTGAATTTTGC 59.701 36.000 0.00 0.00 0.00 3.68
7829 11453 0.034616 TTGAATTTTGCAAGGCCCCG 59.965 50.000 0.00 0.00 0.00 5.73
7830 11454 0.829602 TGAATTTTGCAAGGCCCCGA 60.830 50.000 0.00 0.00 0.00 5.14
7897 11521 3.326006 ACATATCTGGCACCCACATAGAG 59.674 47.826 0.00 0.00 0.00 2.43
7898 11522 0.471617 ATCTGGCACCCACATAGAGC 59.528 55.000 0.00 0.00 0.00 4.09
7899 11523 1.153086 CTGGCACCCACATAGAGCC 60.153 63.158 0.00 0.00 45.41 4.70
7900 11524 2.193248 GGCACCCACATAGAGCCC 59.807 66.667 0.00 0.00 39.42 5.19
7901 11525 2.679342 GGCACCCACATAGAGCCCA 61.679 63.158 0.00 0.00 39.42 5.36
7902 11526 1.452108 GCACCCACATAGAGCCCAC 60.452 63.158 0.00 0.00 0.00 4.61
7903 11527 1.990424 CACCCACATAGAGCCCACA 59.010 57.895 0.00 0.00 0.00 4.17
7904 11528 0.548031 CACCCACATAGAGCCCACAT 59.452 55.000 0.00 0.00 0.00 3.21
7905 11529 1.768275 CACCCACATAGAGCCCACATA 59.232 52.381 0.00 0.00 0.00 2.29
7906 11530 2.050144 ACCCACATAGAGCCCACATAG 58.950 52.381 0.00 0.00 0.00 2.23
7907 11531 2.329267 CCCACATAGAGCCCACATAGA 58.671 52.381 0.00 0.00 0.00 1.98
8038 11671 4.196193 ACTGATCGAACCTTGTGAACAAA 58.804 39.130 0.00 0.00 35.15 2.83
8084 11719 9.903682 ATGATTTTGAGATAGTTTGTGAACAAG 57.096 29.630 0.00 0.00 38.26 3.16
8085 11720 9.119418 TGATTTTGAGATAGTTTGTGAACAAGA 57.881 29.630 0.00 0.00 38.26 3.02
8089 11724 8.777865 TTGAGATAGTTTGTGAACAAGATAGG 57.222 34.615 0.00 0.00 38.26 2.57
8090 11725 6.818644 TGAGATAGTTTGTGAACAAGATAGGC 59.181 38.462 0.00 0.00 38.26 3.93
8091 11726 6.711277 AGATAGTTTGTGAACAAGATAGGCA 58.289 36.000 0.00 0.00 38.26 4.75
8092 11727 6.820656 AGATAGTTTGTGAACAAGATAGGCAG 59.179 38.462 0.00 0.00 38.26 4.85
8093 11728 4.074970 AGTTTGTGAACAAGATAGGCAGG 58.925 43.478 0.00 0.00 38.26 4.85
8094 11729 2.113860 TGTGAACAAGATAGGCAGGC 57.886 50.000 0.00 0.00 0.00 4.85
8095 11730 1.350684 TGTGAACAAGATAGGCAGGCA 59.649 47.619 0.00 0.00 0.00 4.75
8096 11731 2.012673 GTGAACAAGATAGGCAGGCAG 58.987 52.381 0.00 0.00 0.00 4.85
8097 11732 1.908619 TGAACAAGATAGGCAGGCAGA 59.091 47.619 0.00 0.00 0.00 4.26
8098 11733 2.093288 TGAACAAGATAGGCAGGCAGAG 60.093 50.000 0.00 0.00 0.00 3.35
8099 11734 0.835941 ACAAGATAGGCAGGCAGAGG 59.164 55.000 0.00 0.00 0.00 3.69
8100 11735 0.534652 CAAGATAGGCAGGCAGAGGC 60.535 60.000 0.00 0.00 40.13 4.70
8101 11736 2.030262 GATAGGCAGGCAGAGGCG 59.970 66.667 0.00 0.00 42.47 5.52
8102 11737 3.527775 GATAGGCAGGCAGAGGCGG 62.528 68.421 0.00 0.00 42.47 6.13
8111 11746 3.121030 CAGAGGCGGCCGTCAAAG 61.121 66.667 34.17 16.92 0.00 2.77
8112 11747 3.311110 AGAGGCGGCCGTCAAAGA 61.311 61.111 34.17 0.00 0.00 2.52
8113 11748 2.815647 GAGGCGGCCGTCAAAGAG 60.816 66.667 34.17 0.00 0.00 2.85
8118 11753 4.388499 GGCCGTCAAAGAGCCCGA 62.388 66.667 0.00 0.00 41.00 5.14
8119 11754 2.815647 GCCGTCAAAGAGCCCGAG 60.816 66.667 0.00 0.00 0.00 4.63
8120 11755 2.815647 CCGTCAAAGAGCCCGAGC 60.816 66.667 0.00 0.00 40.32 5.03
8121 11756 2.048222 CGTCAAAGAGCCCGAGCA 60.048 61.111 0.00 0.00 43.56 4.26
8122 11757 1.448540 CGTCAAAGAGCCCGAGCAT 60.449 57.895 0.00 0.00 43.56 3.79
8123 11758 1.699656 CGTCAAAGAGCCCGAGCATG 61.700 60.000 0.00 0.00 43.56 4.06
8124 11759 1.746615 TCAAAGAGCCCGAGCATGC 60.747 57.895 10.51 10.51 43.56 4.06
8125 11760 2.042259 CAAAGAGCCCGAGCATGCA 61.042 57.895 21.98 0.00 43.56 3.96
8126 11761 1.077212 AAAGAGCCCGAGCATGCAT 60.077 52.632 21.98 4.75 43.56 3.96
8127 11762 1.381928 AAAGAGCCCGAGCATGCATG 61.382 55.000 22.70 22.70 43.56 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.081804 GTCCATGAAACGGGTCAGAATT 58.918 45.455 0.00 0.00 0.00 2.17
52 53 3.278574 CAACTATGGAAATCGCTTGGGA 58.721 45.455 0.00 0.00 0.00 4.37
145 149 6.376018 GCACCCCAAAACAATGAGTAATAGTA 59.624 38.462 0.00 0.00 0.00 1.82
169 173 5.324697 GTTAATCGTGAAAATCACTCTGGC 58.675 41.667 8.68 0.00 44.85 4.85
172 176 7.201530 GGATTCGTTAATCGTGAAAATCACTCT 60.202 37.037 8.68 0.00 44.85 3.24
196 200 2.042404 AACGTAAACGCACCCCAGGA 62.042 55.000 1.74 0.00 44.43 3.86
265 269 3.083293 GCCCCAAAACGGTGAGTAATAA 58.917 45.455 0.00 0.00 0.00 1.40
289 293 8.539674 GTTTCAACAACTATGAAAATCGCTTTT 58.460 29.630 0.00 0.00 45.43 2.27
320 324 2.731721 CCGACACGTAAGCGCACA 60.732 61.111 11.47 0.00 42.83 4.57
345 349 6.014327 ACCATAATCAGCCAAAACTGTGATTT 60.014 34.615 2.03 0.00 39.68 2.17
361 365 4.196193 GTCCATGAAACGGACCATAATCA 58.804 43.478 0.00 0.00 46.12 2.57
404 408 2.106683 CGTGGAAATCACTCCGGGC 61.107 63.158 0.00 0.00 43.94 6.13
433 437 2.675844 CGAAACATAAACGCATCCCAGA 59.324 45.455 0.00 0.00 0.00 3.86
439 443 2.676342 GAGGACCGAAACATAAACGCAT 59.324 45.455 0.00 0.00 0.00 4.73
562 568 7.035004 TGGTCTCAAGATTTTCAACAAAGTTG 58.965 34.615 3.58 3.58 0.00 3.16
762 855 2.359900 GCCAGACCATTGAACGAAGAT 58.640 47.619 0.00 0.00 0.00 2.40
766 859 1.002624 GGGCCAGACCATTGAACGA 60.003 57.895 4.39 0.00 42.05 3.85
1034 1172 4.548513 CGGGAGGGAGGGAGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
1058 1589 1.657822 GGACGGAAGAGGAATCTTGC 58.342 55.000 0.00 0.00 35.18 4.01
1099 1649 1.360911 GATCGAAGCTCCCGAGACC 59.639 63.158 14.90 5.39 39.55 3.85
1241 1792 1.505477 GCGCGGTAGATCTACTCCGT 61.505 60.000 28.84 1.73 39.57 4.69
1243 1794 1.580437 GGCGCGGTAGATCTACTCC 59.420 63.158 27.68 19.87 36.36 3.85
1245 1796 2.259439 CCGGCGCGGTAGATCTACT 61.259 63.158 27.68 0.00 42.73 2.57
1264 1822 2.439701 CGGCGGAGGAGAGGTACA 60.440 66.667 0.00 0.00 0.00 2.90
1269 1827 3.522731 CTGGACGGCGGAGGAGAG 61.523 72.222 13.24 0.00 0.00 3.20
1329 1896 1.771073 CGTTCAGACGCTTGGTTGCA 61.771 55.000 0.00 0.00 43.03 4.08
1340 1907 3.994392 TCTTTTCATGCCTACGTTCAGAC 59.006 43.478 0.00 0.00 0.00 3.51
1377 4510 1.068474 GCGCAACAAGTCTGACGTAT 58.932 50.000 0.30 0.00 0.00 3.06
1378 4511 0.249114 TGCGCAACAAGTCTGACGTA 60.249 50.000 8.16 0.00 0.00 3.57
1595 4728 7.341445 TGTTTCCTTTTACATGTAGCAAGTT 57.659 32.000 18.62 0.00 0.00 2.66
2059 5192 1.606601 CTGGGTCCTCGACACTGGA 60.607 63.158 0.00 0.00 36.82 3.86
2601 5758 2.433318 AGGAGTTTCGCGCTGAGC 60.433 61.111 5.56 0.00 43.95 4.26
2668 5825 1.153647 GATCCCGCACATCACGTCA 60.154 57.895 0.00 0.00 0.00 4.35
2824 5981 3.605749 TACTGCACCCGCCTGAAGC 62.606 63.158 0.00 0.00 37.32 3.86
2825 5982 1.741770 GTACTGCACCCGCCTGAAG 60.742 63.158 0.00 0.00 37.32 3.02
2826 5983 2.167398 GAGTACTGCACCCGCCTGAA 62.167 60.000 0.00 0.00 37.32 3.02
2827 5984 2.603473 AGTACTGCACCCGCCTGA 60.603 61.111 0.00 0.00 37.32 3.86
2828 5985 2.125512 GAGTACTGCACCCGCCTG 60.126 66.667 0.00 0.00 37.32 4.85
2829 5986 3.391382 GGAGTACTGCACCCGCCT 61.391 66.667 9.84 0.00 37.32 5.52
2830 5987 3.665675 CTGGAGTACTGCACCCGCC 62.666 68.421 13.71 0.00 37.32 6.13
2831 5988 2.125512 CTGGAGTACTGCACCCGC 60.126 66.667 13.71 0.00 39.24 6.13
2832 5989 1.982395 TCCTGGAGTACTGCACCCG 60.982 63.158 13.71 4.05 0.00 5.28
2833 5990 1.597461 GTCCTGGAGTACTGCACCC 59.403 63.158 13.71 1.88 0.00 4.61
2834 5991 1.215647 CGTCCTGGAGTACTGCACC 59.784 63.158 13.71 2.28 0.00 5.01
2835 5992 1.215647 CCGTCCTGGAGTACTGCAC 59.784 63.158 13.71 3.17 42.00 4.57
2836 5993 1.228769 ACCGTCCTGGAGTACTGCA 60.229 57.895 16.82 16.82 42.00 4.41
2837 5994 1.248785 TGACCGTCCTGGAGTACTGC 61.249 60.000 7.56 7.56 42.00 4.40
2838 5995 0.811915 CTGACCGTCCTGGAGTACTG 59.188 60.000 0.00 0.00 42.00 2.74
2839 5996 0.697079 TCTGACCGTCCTGGAGTACT 59.303 55.000 0.00 0.00 42.00 2.73
2840 5997 1.677052 GATCTGACCGTCCTGGAGTAC 59.323 57.143 0.00 0.00 42.00 2.73
2841 5998 1.746171 CGATCTGACCGTCCTGGAGTA 60.746 57.143 0.00 0.00 42.00 2.59
2842 5999 1.032657 CGATCTGACCGTCCTGGAGT 61.033 60.000 0.00 0.00 42.00 3.85
2843 6000 1.730487 CGATCTGACCGTCCTGGAG 59.270 63.158 0.00 0.00 42.00 3.86
2844 6001 2.415608 GCGATCTGACCGTCCTGGA 61.416 63.158 0.00 0.00 42.00 3.86
2845 6002 2.105128 GCGATCTGACCGTCCTGG 59.895 66.667 0.00 0.00 46.41 4.45
2846 6003 1.949847 AAGGCGATCTGACCGTCCTG 61.950 60.000 7.94 0.00 35.13 3.86
2847 6004 1.682684 AAGGCGATCTGACCGTCCT 60.683 57.895 0.00 0.00 35.95 3.85
2848 6005 1.519455 CAAGGCGATCTGACCGTCC 60.519 63.158 0.00 0.00 31.06 4.79
2849 6006 1.519455 CCAAGGCGATCTGACCGTC 60.519 63.158 0.00 0.00 0.00 4.79
2850 6007 1.982395 TCCAAGGCGATCTGACCGT 60.982 57.895 0.00 0.00 0.00 4.83
2851 6008 1.519455 GTCCAAGGCGATCTGACCG 60.519 63.158 0.00 0.00 0.00 4.79
2852 6009 1.519455 CGTCCAAGGCGATCTGACC 60.519 63.158 0.00 0.00 0.00 4.02
2853 6010 2.167861 GCGTCCAAGGCGATCTGAC 61.168 63.158 7.03 0.00 0.00 3.51
2854 6011 2.184322 GCGTCCAAGGCGATCTGA 59.816 61.111 7.03 0.00 0.00 3.27
2855 6012 2.125552 TGCGTCCAAGGCGATCTG 60.126 61.111 7.03 0.00 0.00 2.90
2856 6013 2.185350 CTGCGTCCAAGGCGATCT 59.815 61.111 7.03 0.00 0.00 2.75
2857 6014 2.892425 CCTGCGTCCAAGGCGATC 60.892 66.667 7.03 0.00 0.00 3.69
3229 6386 4.980903 GTGTTGTGCTTGCGGCGG 62.981 66.667 9.78 0.00 45.43 6.13
3402 6559 1.592400 GGTTCTAACCCCTTTGCGCC 61.592 60.000 4.18 0.00 43.43 6.53
3653 6881 3.354948 ACCAAGCTCTATTGCATGACA 57.645 42.857 0.00 0.00 34.05 3.58
3803 7038 3.061831 CGTTTGAGTTGAGCTGAGCTATG 59.938 47.826 7.08 0.00 39.88 2.23
3835 7070 7.132213 CGACACAAACAGAAGTTCAAACATAT 58.868 34.615 5.50 0.00 36.84 1.78
3970 7205 0.743345 GCCACACCGGTATGTCCTTC 60.743 60.000 12.76 0.00 36.97 3.46
3981 7216 1.002468 CAGACTCTTTTTGCCACACCG 60.002 52.381 0.00 0.00 0.00 4.94
4028 7321 7.501844 AGACCTGGAATACAGTAAGATAAAGC 58.498 38.462 0.00 0.00 46.06 3.51
4031 7324 8.642432 CATGAGACCTGGAATACAGTAAGATAA 58.358 37.037 0.00 0.00 46.06 1.75
4063 7356 6.600882 AGGATTTCTTTCATGAGCAACAAT 57.399 33.333 0.00 0.00 0.00 2.71
4103 7396 5.184864 CCTGCATTAATTAGAACACCCAACA 59.815 40.000 0.00 0.00 0.00 3.33
4128 7421 1.337823 TGCAGCGTCTTAAGAACTCCC 60.338 52.381 6.78 2.60 0.00 4.30
4141 7434 1.592223 GGTACCTCTCTTGCAGCGT 59.408 57.895 4.06 0.00 0.00 5.07
4218 7511 2.334006 TCTCTTTGAGAAGGGAGGCT 57.666 50.000 0.00 0.00 37.46 4.58
4230 7523 6.936279 TGGGTTACTTCTGTAGATCTCTTTG 58.064 40.000 0.00 0.00 0.00 2.77
4317 7610 4.318332 CAACAAGAGCCTTCACATACTGA 58.682 43.478 0.00 0.00 0.00 3.41
4344 7637 3.254629 GCTTTCATCCAGCCTGTCA 57.745 52.632 0.00 0.00 0.00 3.58
4383 7676 3.261137 GGCAGTAAAGACCACTACCTCTT 59.739 47.826 0.00 0.00 0.00 2.85
4398 7691 1.277842 TCAATTGAGGCGAGGCAGTAA 59.722 47.619 3.38 0.00 0.00 2.24
4405 7698 5.745514 CACAAATCTATCAATTGAGGCGAG 58.254 41.667 14.54 8.41 0.00 5.03
4408 7701 5.252969 TGCACAAATCTATCAATTGAGGC 57.747 39.130 14.54 6.60 0.00 4.70
4410 7703 7.484007 GTGTCTTGCACAAATCTATCAATTGAG 59.516 37.037 14.54 1.16 46.91 3.02
4412 7705 7.502177 GTGTCTTGCACAAATCTATCAATTG 57.498 36.000 0.00 0.00 46.91 2.32
4428 7721 0.740737 ACAGCAGGTTTGTGTCTTGC 59.259 50.000 0.00 0.00 38.01 4.01
4429 7722 2.763249 GACAGCAGGTTTGTGTCTTG 57.237 50.000 0.00 0.00 38.06 3.02
4432 7725 1.668419 ACAGACAGCAGGTTTGTGTC 58.332 50.000 4.28 0.00 42.69 3.67
4433 7726 2.017049 GAACAGACAGCAGGTTTGTGT 58.983 47.619 5.65 0.00 43.43 3.72
4434 7727 2.016318 TGAACAGACAGCAGGTTTGTG 58.984 47.619 5.65 0.00 43.43 3.33
4435 7728 2.418368 TGAACAGACAGCAGGTTTGT 57.582 45.000 0.00 0.00 45.91 2.83
4436 7729 2.684881 ACTTGAACAGACAGCAGGTTTG 59.315 45.455 0.00 0.00 37.61 2.93
4437 7730 2.684881 CACTTGAACAGACAGCAGGTTT 59.315 45.455 0.00 0.00 0.00 3.27
4438 7731 2.292267 CACTTGAACAGACAGCAGGTT 58.708 47.619 0.00 0.00 0.00 3.50
4439 7732 1.959042 CACTTGAACAGACAGCAGGT 58.041 50.000 0.00 0.00 0.00 4.00
4440 7733 0.590195 GCACTTGAACAGACAGCAGG 59.410 55.000 0.00 0.00 0.00 4.85
4441 7734 0.234106 CGCACTTGAACAGACAGCAG 59.766 55.000 0.00 0.00 0.00 4.24
4448 7741 1.581934 TGAAGGACGCACTTGAACAG 58.418 50.000 0.00 0.00 0.00 3.16
4469 7762 4.391830 ACAGTATTATGTTCAGTGCGTTGG 59.608 41.667 0.00 0.00 0.00 3.77
4485 7778 9.574516 AAAGATGTGTCCTAAAAAGACAGTATT 57.425 29.630 0.00 0.00 44.57 1.89
4495 7788 7.103641 CCACTAGCTAAAGATGTGTCCTAAAA 58.896 38.462 8.69 0.00 0.00 1.52
4500 7793 3.197983 ACCCACTAGCTAAAGATGTGTCC 59.802 47.826 8.69 0.00 0.00 4.02
4502 7795 4.910458 AACCCACTAGCTAAAGATGTGT 57.090 40.909 8.69 0.00 0.00 3.72
4504 7797 5.763876 AGAAACCCACTAGCTAAAGATGT 57.236 39.130 0.00 0.00 0.00 3.06
4505 7798 7.454260 AAAAGAAACCCACTAGCTAAAGATG 57.546 36.000 0.00 0.00 0.00 2.90
4507 7800 8.380099 TCATAAAAGAAACCCACTAGCTAAAGA 58.620 33.333 0.00 0.00 0.00 2.52
4513 7812 9.555727 TGTATATCATAAAAGAAACCCACTAGC 57.444 33.333 0.00 0.00 0.00 3.42
4568 7878 7.964559 CGTGTTTAGATCATGTTGAATGTCAAT 59.035 33.333 0.00 0.00 38.79 2.57
4571 7881 5.734498 GCGTGTTTAGATCATGTTGAATGTC 59.266 40.000 0.00 0.00 0.00 3.06
4575 7885 4.154015 CCTGCGTGTTTAGATCATGTTGAA 59.846 41.667 0.00 0.00 0.00 2.69
4605 7915 4.324563 CCTTCTTCCTCCCTTGCTGAATTA 60.325 45.833 0.00 0.00 0.00 1.40
4662 7972 2.156098 GCCCCATCTTTTGTTGTACGA 58.844 47.619 0.00 0.00 0.00 3.43
4668 7978 2.250924 CCAAGAGCCCCATCTTTTGTT 58.749 47.619 0.00 0.00 37.43 2.83
4671 7981 2.649816 AGTACCAAGAGCCCCATCTTTT 59.350 45.455 0.00 0.00 37.43 2.27
4704 8014 3.943381 TCTCTGATGCAACCATGTGAATC 59.057 43.478 0.00 0.00 0.00 2.52
4728 8038 0.969409 GCTGCTCCTTGAATTGGCCT 60.969 55.000 3.32 0.00 0.00 5.19
4764 8074 2.157738 AGGAAAGTGAGTGCAATGCTC 58.842 47.619 6.82 2.32 0.00 4.26
4794 8104 2.377810 AATCAGAGCCCCGATGCCA 61.378 57.895 0.00 0.00 0.00 4.92
4845 8155 7.357429 TCATGATATAGCCATCCTACATCAG 57.643 40.000 0.00 0.00 41.77 2.90
4851 8161 9.680409 AATAAGGATCATGATATAGCCATCCTA 57.320 33.333 8.54 0.00 39.41 2.94
4852 8162 8.578593 AATAAGGATCATGATATAGCCATCCT 57.421 34.615 8.54 6.29 41.63 3.24
4853 8163 8.435187 TGAATAAGGATCATGATATAGCCATCC 58.565 37.037 8.54 3.79 0.00 3.51
4854 8164 9.491675 CTGAATAAGGATCATGATATAGCCATC 57.508 37.037 8.54 3.37 0.00 3.51
4855 8165 9.000978 ACTGAATAAGGATCATGATATAGCCAT 57.999 33.333 8.54 1.16 0.00 4.40
4856 8166 8.262933 CACTGAATAAGGATCATGATATAGCCA 58.737 37.037 8.54 0.98 0.00 4.75
4857 8167 8.263640 ACACTGAATAAGGATCATGATATAGCC 58.736 37.037 8.54 5.59 0.00 3.93
4859 8169 9.513727 CGACACTGAATAAGGATCATGATATAG 57.486 37.037 8.54 0.00 0.00 1.31
4860 8170 8.470002 CCGACACTGAATAAGGATCATGATATA 58.530 37.037 8.54 3.12 0.00 0.86
4861 8171 7.326454 CCGACACTGAATAAGGATCATGATAT 58.674 38.462 8.54 0.75 0.00 1.63
4862 8172 6.691508 CCGACACTGAATAAGGATCATGATA 58.308 40.000 8.54 0.00 0.00 2.15
4863 8173 5.545588 CCGACACTGAATAAGGATCATGAT 58.454 41.667 8.25 8.25 0.00 2.45
4864 8174 4.740634 GCCGACACTGAATAAGGATCATGA 60.741 45.833 0.00 0.00 0.00 3.07
4865 8175 3.496130 GCCGACACTGAATAAGGATCATG 59.504 47.826 0.00 0.00 0.00 3.07
4866 8176 3.134623 TGCCGACACTGAATAAGGATCAT 59.865 43.478 0.00 0.00 0.00 2.45
4882 8193 5.189659 AGTCAATAGAGATTACTGCCGAC 57.810 43.478 0.00 0.00 0.00 4.79
4883 8194 5.359860 TGAAGTCAATAGAGATTACTGCCGA 59.640 40.000 0.00 0.00 0.00 5.54
4885 8196 7.849804 TTTGAAGTCAATAGAGATTACTGCC 57.150 36.000 0.00 0.00 35.55 4.85
4906 8217 5.481473 ACCCAAGGCCTGCATATATAATTTG 59.519 40.000 5.69 0.00 0.00 2.32
4907 8218 5.654370 ACCCAAGGCCTGCATATATAATTT 58.346 37.500 5.69 0.00 0.00 1.82
4929 8240 1.200948 GGCTGAACCTCTTCATGCAAC 59.799 52.381 0.00 0.00 35.78 4.17
4998 8309 3.059352 TCCTCAAGTTCAGCTTTAGCC 57.941 47.619 0.00 0.00 43.38 3.93
5056 8367 2.158842 GGATGGAACCAGGAGAGTGATG 60.159 54.545 0.00 0.00 0.00 3.07
5069 8380 3.374058 CGTAATTCACTGGTGGATGGAAC 59.626 47.826 0.70 0.00 0.00 3.62
5090 8401 6.929049 TCATTACCCAGCTGTTAATATCTTCG 59.071 38.462 13.81 3.10 0.00 3.79
5120 8431 6.263842 CGCCGGGGTAGATATATCTGTTTATA 59.736 42.308 23.03 1.24 37.76 0.98
5121 8432 5.068723 CGCCGGGGTAGATATATCTGTTTAT 59.931 44.000 23.03 0.70 37.76 1.40
5128 8439 1.955080 CCTCGCCGGGGTAGATATATC 59.045 57.143 19.13 4.42 0.00 1.63
5142 8460 1.801178 GTTTATGATAGCAGCCTCGCC 59.199 52.381 0.00 0.00 0.00 5.54
5143 8461 2.483876 TGTTTATGATAGCAGCCTCGC 58.516 47.619 0.00 0.00 0.00 5.03
5193 8512 7.870954 TGGTATTAACTAAACTGTGTCTGTCTG 59.129 37.037 0.00 0.00 0.00 3.51
5226 8545 9.056005 GTATCAATTTATCATGTAGCAGACCAA 57.944 33.333 0.00 0.00 0.00 3.67
5254 8573 4.889409 GGAAAAGGAGGCATGACATGATTA 59.111 41.667 19.76 0.00 0.00 1.75
5255 8574 3.703052 GGAAAAGGAGGCATGACATGATT 59.297 43.478 19.76 5.74 0.00 2.57
5256 8575 3.294214 GGAAAAGGAGGCATGACATGAT 58.706 45.455 19.76 6.46 0.00 2.45
5374 8693 1.134551 GCAGGAGAGCCTTGGAAGTAG 60.135 57.143 0.00 0.00 43.90 2.57
5376 8695 1.682257 GCAGGAGAGCCTTGGAAGT 59.318 57.895 0.00 0.00 43.90 3.01
5407 8761 0.318360 GTAAAGGGGTGCGCAAACAC 60.318 55.000 14.00 10.09 39.94 3.32
5408 8762 0.466555 AGTAAAGGGGTGCGCAAACA 60.467 50.000 14.00 0.00 0.00 2.83
5417 8771 4.565028 GCTACTGCTACAAAGTAAAGGGGT 60.565 45.833 0.00 0.00 36.03 4.95
5418 8772 3.939592 GCTACTGCTACAAAGTAAAGGGG 59.060 47.826 0.00 0.00 36.03 4.79
5420 8774 6.743575 AATGCTACTGCTACAAAGTAAAGG 57.256 37.500 0.00 0.00 40.48 3.11
5483 9053 4.084287 AGAAGGCACAATGTCATGACAAT 58.916 39.130 31.00 21.34 45.41 2.71
5510 9080 2.501610 CTCAGCCCTACGGAAGCC 59.498 66.667 0.00 0.00 0.00 4.35
5556 9126 5.163953 GGAACATCACATGAAACACTCTACG 60.164 44.000 0.00 0.00 0.00 3.51
5596 9190 4.280174 GCATGAAAGGTGCTGGATGAATAT 59.720 41.667 0.00 0.00 39.45 1.28
5869 9463 2.359975 GGGTTTCTGCTCCCACCG 60.360 66.667 0.00 0.00 42.95 4.94
5965 9559 6.018016 GGAAGTTTGTTGCTGCAATTACAATT 60.018 34.615 19.11 10.61 31.30 2.32
6028 9622 4.025979 GGAACCACGATATGACGATCAAAC 60.026 45.833 0.00 0.00 37.03 2.93
6076 9670 5.072129 ACATATGAGTCTCCAGGATCTGA 57.928 43.478 10.38 0.00 32.44 3.27
6118 9712 8.582437 CATTACAAGAGAAATGCATGGGATAAT 58.418 33.333 0.00 0.00 0.00 1.28
6224 9820 2.546795 GGTCATCAGATCCACATCGTCC 60.547 54.545 0.00 0.00 33.75 4.79
6338 9934 0.713883 CGAGGTCGGTCATTGAAACG 59.286 55.000 5.85 5.85 35.37 3.60
6528 10124 2.672651 CTGCGTGACCATGCCCAA 60.673 61.111 11.23 0.00 42.47 4.12
6926 10534 2.125147 TTCTTGATCTGGGCGCCG 60.125 61.111 22.54 7.85 0.00 6.46
6959 10567 2.607892 GGTGTCACCGCTGCTGTTC 61.608 63.158 6.18 0.00 0.00 3.18
7091 10699 1.377994 CACTCCCTTGGCTTGAGCT 59.622 57.895 2.66 0.00 41.70 4.09
7112 10720 3.942439 GGCTAGGACCCGATGCCC 61.942 72.222 8.17 0.00 37.81 5.36
7153 10761 0.961019 TGGCACTTTGCTGGATTGAC 59.039 50.000 0.00 0.00 44.28 3.18
7154 10762 1.927487 ATGGCACTTTGCTGGATTGA 58.073 45.000 0.00 0.00 44.28 2.57
7155 10763 2.754946 AATGGCACTTTGCTGGATTG 57.245 45.000 0.00 0.00 44.28 2.67
7158 10766 4.142182 GCTAATTAATGGCACTTTGCTGGA 60.142 41.667 0.00 0.00 44.28 3.86
7192 10800 5.306678 AGAATTTGCCCTGTTGTCCATAAAA 59.693 36.000 0.00 0.00 0.00 1.52
7313 10921 8.614346 CATGAATGGATCTTCTTCTTCTTCTTC 58.386 37.037 0.00 0.00 0.00 2.87
7314 10922 8.508883 CATGAATGGATCTTCTTCTTCTTCTT 57.491 34.615 0.00 0.00 0.00 2.52
7350 10958 0.035725 CTCCTTGGCATGACTCAGCA 60.036 55.000 0.00 0.00 0.00 4.41
7389 10997 8.824159 ACGATCAAATGATAAGAGGTCTAATG 57.176 34.615 0.00 0.00 34.37 1.90
7420 11028 5.423886 TCCAAGATTGCGACATACAATGTA 58.576 37.500 0.00 0.00 45.03 2.29
7421 11029 7.254898 CTTATCCAAGATTGCGACATACAATGT 60.255 37.037 0.00 0.00 39.11 2.71
7425 11033 5.670485 ACTTATCCAAGATTGCGACATACA 58.330 37.500 0.00 0.00 35.60 2.29
7426 11034 6.037172 ACAACTTATCCAAGATTGCGACATAC 59.963 38.462 0.00 0.00 35.60 2.39
7480 11094 3.289834 ACAGCAACAAGGCAGGCG 61.290 61.111 0.00 0.00 35.83 5.52
7517 11134 2.224992 TGCCATTCCTGGTGAGCTTTTA 60.225 45.455 0.00 0.00 45.10 1.52
7540 11157 1.212688 CTTACCAGGCCATGATCCACA 59.787 52.381 5.01 0.00 0.00 4.17
7542 11159 1.595311 ACTTACCAGGCCATGATCCA 58.405 50.000 5.01 0.00 0.00 3.41
7543 11160 2.706190 AGTACTTACCAGGCCATGATCC 59.294 50.000 5.01 0.00 0.00 3.36
7544 11161 3.244249 GGAGTACTTACCAGGCCATGATC 60.244 52.174 5.01 0.00 0.00 2.92
7545 11162 2.706190 GGAGTACTTACCAGGCCATGAT 59.294 50.000 5.01 0.00 0.00 2.45
7546 11163 2.116238 GGAGTACTTACCAGGCCATGA 58.884 52.381 5.01 0.00 0.00 3.07
7547 11164 1.202533 CGGAGTACTTACCAGGCCATG 60.203 57.143 5.01 0.00 0.00 3.66
7549 11166 0.251922 ACGGAGTACTTACCAGGCCA 60.252 55.000 5.01 0.00 41.94 5.36
7551 11168 1.274447 ACAACGGAGTACTTACCAGGC 59.726 52.381 0.00 0.00 45.00 4.85
7552 11169 3.672767 AACAACGGAGTACTTACCAGG 57.327 47.619 0.00 0.00 45.00 4.45
7554 11171 3.642848 AGGAAACAACGGAGTACTTACCA 59.357 43.478 0.00 0.00 45.00 3.25
7555 11172 4.263018 AGGAAACAACGGAGTACTTACC 57.737 45.455 0.00 0.00 45.00 2.85
7556 11173 4.687948 GGAAGGAAACAACGGAGTACTTAC 59.312 45.833 0.00 0.00 45.00 2.34
7557 11174 4.590222 AGGAAGGAAACAACGGAGTACTTA 59.410 41.667 0.00 0.00 45.00 2.24
7558 11175 3.390311 AGGAAGGAAACAACGGAGTACTT 59.610 43.478 0.00 0.00 45.00 2.24
7559 11176 2.970640 AGGAAGGAAACAACGGAGTACT 59.029 45.455 0.00 0.00 45.00 2.73
7566 11185 3.493503 GCGGATATAGGAAGGAAACAACG 59.506 47.826 0.00 0.00 0.00 4.10
7578 11197 4.743057 TCAATCTCCATGCGGATATAGG 57.257 45.455 0.00 0.00 41.79 2.57
7586 11207 3.302935 CGTCAAGAATCAATCTCCATGCG 60.303 47.826 0.00 0.00 37.42 4.73
7607 11228 0.813184 AAGGACCTGATGCAATTGCG 59.187 50.000 24.58 12.76 45.83 4.85
7623 11244 3.457610 AAAACATCAACACCAGCAAGG 57.542 42.857 0.00 0.00 45.67 3.61
7651 11273 0.465705 ATCGCATGACCGACCTCATT 59.534 50.000 0.00 0.00 40.40 2.57
7653 11275 1.141665 CATCGCATGACCGACCTCA 59.858 57.895 0.00 0.00 40.40 3.86
7654 11276 1.141881 ACATCGCATGACCGACCTC 59.858 57.895 0.00 0.00 40.40 3.85
7744 11368 3.056891 TGCCGGTTTTCCTTTCATTCATC 60.057 43.478 1.90 0.00 37.95 2.92
7754 11378 1.165270 CTTCGAATGCCGGTTTTCCT 58.835 50.000 1.90 0.00 39.14 3.36
7793 11417 6.358974 AATTCAACAAATCCAAACCCTAGG 57.641 37.500 0.06 0.06 0.00 3.02
7794 11418 7.307930 GCAAAATTCAACAAATCCAAACCCTAG 60.308 37.037 0.00 0.00 0.00 3.02
7870 11494 3.509575 TGTGGGTGCCAGATATGTTTTTC 59.490 43.478 0.00 0.00 32.34 2.29
7875 11499 3.317406 TCTATGTGGGTGCCAGATATGT 58.683 45.455 0.00 0.00 38.73 2.29
7897 11521 7.826252 ACTATGATTGTGATTATCTATGTGGGC 59.174 37.037 0.00 0.00 0.00 5.36
7965 11590 5.441718 TTTCAGATTCTACCATGGAAGCT 57.558 39.130 21.47 7.77 39.56 3.74
8058 11693 9.903682 CTTGTTCACAAACTATCTCAAAATCAT 57.096 29.630 0.00 0.00 36.30 2.45
8073 11708 2.819608 GCCTGCCTATCTTGTTCACAAA 59.180 45.455 0.00 0.00 35.15 2.83
8074 11709 2.224744 TGCCTGCCTATCTTGTTCACAA 60.225 45.455 0.00 0.00 0.00 3.33
8075 11710 1.350684 TGCCTGCCTATCTTGTTCACA 59.649 47.619 0.00 0.00 0.00 3.58
8076 11711 2.012673 CTGCCTGCCTATCTTGTTCAC 58.987 52.381 0.00 0.00 0.00 3.18
8077 11712 1.908619 TCTGCCTGCCTATCTTGTTCA 59.091 47.619 0.00 0.00 0.00 3.18
8078 11713 2.559440 CTCTGCCTGCCTATCTTGTTC 58.441 52.381 0.00 0.00 0.00 3.18
8079 11714 1.211457 CCTCTGCCTGCCTATCTTGTT 59.789 52.381 0.00 0.00 0.00 2.83
8080 11715 0.835941 CCTCTGCCTGCCTATCTTGT 59.164 55.000 0.00 0.00 0.00 3.16
8081 11716 0.534652 GCCTCTGCCTGCCTATCTTG 60.535 60.000 0.00 0.00 0.00 3.02
8082 11717 1.835693 GCCTCTGCCTGCCTATCTT 59.164 57.895 0.00 0.00 0.00 2.40
8083 11718 2.506061 CGCCTCTGCCTGCCTATCT 61.506 63.158 0.00 0.00 0.00 1.98
8084 11719 2.030262 CGCCTCTGCCTGCCTATC 59.970 66.667 0.00 0.00 0.00 2.08
8085 11720 3.554342 CCGCCTCTGCCTGCCTAT 61.554 66.667 0.00 0.00 0.00 2.57
8094 11729 3.121030 CTTTGACGGCCGCCTCTG 61.121 66.667 28.58 9.54 0.00 3.35
8095 11730 3.302347 CTCTTTGACGGCCGCCTCT 62.302 63.158 28.58 4.99 0.00 3.69
8096 11731 2.815647 CTCTTTGACGGCCGCCTC 60.816 66.667 28.58 17.65 0.00 4.70
8101 11736 4.388499 TCGGGCTCTTTGACGGCC 62.388 66.667 0.00 0.00 44.59 6.13
8102 11737 2.815647 CTCGGGCTCTTTGACGGC 60.816 66.667 0.00 0.00 0.00 5.68
8103 11738 2.815647 GCTCGGGCTCTTTGACGG 60.816 66.667 0.00 0.00 35.22 4.79
8104 11739 1.448540 ATGCTCGGGCTCTTTGACG 60.449 57.895 9.62 0.00 39.59 4.35
8105 11740 1.986575 GCATGCTCGGGCTCTTTGAC 61.987 60.000 9.62 0.00 39.59 3.18
8106 11741 1.746615 GCATGCTCGGGCTCTTTGA 60.747 57.895 9.62 0.00 39.59 2.69
8107 11742 1.381928 ATGCATGCTCGGGCTCTTTG 61.382 55.000 20.33 2.01 39.59 2.77
8108 11743 1.077212 ATGCATGCTCGGGCTCTTT 60.077 52.632 20.33 0.00 39.59 2.52
8109 11744 1.822613 CATGCATGCTCGGGCTCTT 60.823 57.895 20.33 0.00 39.59 2.85
8110 11745 2.203167 CATGCATGCTCGGGCTCT 60.203 61.111 20.33 0.00 39.59 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.