Multiple sequence alignment - TraesCS1B01G476100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G476100 chr1B 100.000 2735 0 0 1 2735 684793158 684790424 0.000000e+00 5051
1 TraesCS1B01G476100 chr1A 88.661 1270 91 24 864 2087 75714124 75712862 0.000000e+00 1498
2 TraesCS1B01G476100 chr1A 85.419 1063 107 16 1072 2092 440923679 440924735 0.000000e+00 1061
3 TraesCS1B01G476100 chr1A 90.400 500 26 6 2093 2570 75712433 75711934 2.970000e-179 638
4 TraesCS1B01G476100 chr1A 80.233 602 92 23 71 659 75714946 75714359 7.000000e-116 427
5 TraesCS1B01G476100 chr1A 81.200 500 68 10 2093 2568 440925083 440925580 1.990000e-101 379
6 TraesCS1B01G476100 chr1A 91.813 171 11 2 2568 2735 75711835 75711665 4.550000e-58 235
7 TraesCS1B01G476100 chr7A 88.346 1270 95 24 864 2087 430256621 430255359 0.000000e+00 1476
8 TraesCS1B01G476100 chr7A 90.141 497 26 7 2096 2570 430254884 430254389 2.310000e-175 625
9 TraesCS1B01G476100 chr7A 79.844 640 101 20 8 636 430265996 430265374 2.500000e-120 442
10 TraesCS1B01G476100 chr7A 90.608 181 13 3 2558 2735 430254299 430254120 1.270000e-58 237
11 TraesCS1B01G476100 chr2B 85.106 987 116 12 1072 2029 748143908 748142924 0.000000e+00 979
12 TraesCS1B01G476100 chr5D 84.741 983 118 10 1076 2031 479790555 479791532 0.000000e+00 955
13 TraesCS1B01G476100 chr5D 80.632 475 66 15 2118 2568 479868115 479868587 7.250000e-91 344
14 TraesCS1B01G476100 chr5B 84.514 988 121 13 1072 2031 587477725 587478708 0.000000e+00 948
15 TraesCS1B01G476100 chr5B 79.559 499 77 13 2093 2568 587595480 587595976 1.570000e-87 333
16 TraesCS1B01G476100 chr3D 73.427 779 189 17 1119 1889 497963304 497964072 2.680000e-70 276
17 TraesCS1B01G476100 chr3D 73.008 778 195 14 1119 1889 49542588 49543357 2.700000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G476100 chr1B 684790424 684793158 2734 True 5051.000000 5051 100.000000 1 2735 1 chr1B.!!$R1 2734
1 TraesCS1B01G476100 chr1A 440923679 440925580 1901 False 720.000000 1061 83.309500 1072 2568 2 chr1A.!!$F1 1496
2 TraesCS1B01G476100 chr1A 75711665 75714946 3281 True 699.500000 1498 87.776750 71 2735 4 chr1A.!!$R1 2664
3 TraesCS1B01G476100 chr7A 430254120 430256621 2501 True 779.333333 1476 89.698333 864 2735 3 chr7A.!!$R2 1871
4 TraesCS1B01G476100 chr7A 430265374 430265996 622 True 442.000000 442 79.844000 8 636 1 chr7A.!!$R1 628
5 TraesCS1B01G476100 chr2B 748142924 748143908 984 True 979.000000 979 85.106000 1072 2029 1 chr2B.!!$R1 957
6 TraesCS1B01G476100 chr5D 479790555 479791532 977 False 955.000000 955 84.741000 1076 2031 1 chr5D.!!$F1 955
7 TraesCS1B01G476100 chr5B 587477725 587478708 983 False 948.000000 948 84.514000 1072 2031 1 chr5B.!!$F1 959
8 TraesCS1B01G476100 chr3D 497963304 497964072 768 False 276.000000 276 73.427000 1119 1889 1 chr3D.!!$F2 770
9 TraesCS1B01G476100 chr3D 49542588 49543357 769 False 259.000000 259 73.008000 1119 1889 1 chr3D.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 899 0.03309 CATATCGAGGAGCAGCAGCA 59.967 55.0 3.17 0.0 45.49 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2530 0.035152 CCTCAACTGTAGCCCATGCA 60.035 55.0 0.0 0.0 41.13 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.344500 CGGGTTGGTGCGGTCTAA 59.656 61.111 0.00 0.00 0.00 2.10
19 20 1.078708 CGGGTTGGTGCGGTCTAAT 60.079 57.895 0.00 0.00 0.00 1.73
34 35 3.344515 GTCTAATTGACCCACCTGAACC 58.655 50.000 0.00 0.00 39.69 3.62
36 37 0.768622 AATTGACCCACCTGAACCGA 59.231 50.000 0.00 0.00 0.00 4.69
48 49 1.079405 GAACCGATTCGACCCAGCA 60.079 57.895 7.83 0.00 0.00 4.41
53 54 3.329542 GATTCGACCCAGCAGCCCA 62.330 63.158 0.00 0.00 0.00 5.36
54 55 2.819984 GATTCGACCCAGCAGCCCAA 62.820 60.000 0.00 0.00 0.00 4.12
55 56 2.424842 ATTCGACCCAGCAGCCCAAA 62.425 55.000 0.00 0.00 0.00 3.28
56 57 2.361610 CGACCCAGCAGCCCAAAT 60.362 61.111 0.00 0.00 0.00 2.32
57 58 2.409870 CGACCCAGCAGCCCAAATC 61.410 63.158 0.00 0.00 0.00 2.17
58 59 2.361610 ACCCAGCAGCCCAAATCG 60.362 61.111 0.00 0.00 0.00 3.34
59 60 2.045045 CCCAGCAGCCCAAATCGA 60.045 61.111 0.00 0.00 0.00 3.59
62 63 2.044946 AGCAGCCCAAATCGACCC 60.045 61.111 0.00 0.00 0.00 4.46
63 64 2.044946 GCAGCCCAAATCGACCCT 60.045 61.111 0.00 0.00 0.00 4.34
64 65 2.409870 GCAGCCCAAATCGACCCTG 61.410 63.158 0.00 0.00 0.00 4.45
65 66 2.044946 AGCCCAAATCGACCCTGC 60.045 61.111 0.00 0.00 0.00 4.85
66 67 3.140814 GCCCAAATCGACCCTGCC 61.141 66.667 0.00 0.00 0.00 4.85
67 68 2.440247 CCCAAATCGACCCTGCCC 60.440 66.667 0.00 0.00 0.00 5.36
68 69 2.354729 CCAAATCGACCCTGCCCA 59.645 61.111 0.00 0.00 0.00 5.36
69 70 1.076777 CCAAATCGACCCTGCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
82 83 4.757355 CCCATTGCCCCTTCGCCA 62.757 66.667 0.00 0.00 0.00 5.69
89 90 3.330720 CCCCTTCGCCACCCTTCT 61.331 66.667 0.00 0.00 0.00 2.85
90 91 2.269241 CCCTTCGCCACCCTTCTC 59.731 66.667 0.00 0.00 0.00 2.87
93 94 1.219393 CTTCGCCACCCTTCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
97 98 1.604915 GCCACCCTTCTCCTCTTCC 59.395 63.158 0.00 0.00 0.00 3.46
100 101 1.306226 ACCCTTCTCCTCTTCCCCG 60.306 63.158 0.00 0.00 0.00 5.73
101 102 2.736826 CCCTTCTCCTCTTCCCCGC 61.737 68.421 0.00 0.00 0.00 6.13
102 103 2.496817 CTTCTCCTCTTCCCCGCG 59.503 66.667 0.00 0.00 0.00 6.46
103 104 2.283676 TTCTCCTCTTCCCCGCGT 60.284 61.111 4.92 0.00 0.00 6.01
104 105 1.889530 CTTCTCCTCTTCCCCGCGTT 61.890 60.000 4.92 0.00 0.00 4.84
105 106 1.885163 TTCTCCTCTTCCCCGCGTTC 61.885 60.000 4.92 0.00 0.00 3.95
106 107 3.372554 CTCCTCTTCCCCGCGTTCC 62.373 68.421 4.92 0.00 0.00 3.62
107 108 4.468689 CCTCTTCCCCGCGTTCCC 62.469 72.222 4.92 0.00 0.00 3.97
111 112 2.607134 TTCCCCGCGTTCCCCTTA 60.607 61.111 4.92 0.00 0.00 2.69
117 118 2.588439 GCGTTCCCCTTACCTCCC 59.412 66.667 0.00 0.00 0.00 4.30
140 141 3.099438 GGCGACGAGATCAGACGA 58.901 61.111 14.54 0.00 0.00 4.20
144 145 1.918112 GCGACGAGATCAGACGATGAC 60.918 57.143 14.54 4.06 41.91 3.06
145 146 1.655050 CGACGAGATCAGACGATGACG 60.655 57.143 12.38 0.00 41.91 4.35
165 167 0.817654 ATCGACGGCATGAACTGAGA 59.182 50.000 0.00 0.00 0.00 3.27
166 168 0.109272 TCGACGGCATGAACTGAGAC 60.109 55.000 0.00 0.00 0.00 3.36
170 172 0.803768 CGGCATGAACTGAGACTCGG 60.804 60.000 9.88 9.88 0.00 4.63
201 203 3.111853 GACAACAGGTCAGTCACATCA 57.888 47.619 0.00 0.00 46.19 3.07
203 205 3.876914 GACAACAGGTCAGTCACATCAAA 59.123 43.478 0.00 0.00 46.19 2.69
206 208 5.009010 ACAACAGGTCAGTCACATCAAAATC 59.991 40.000 0.00 0.00 0.00 2.17
211 213 4.690748 GGTCAGTCACATCAAAATCGAGAA 59.309 41.667 0.00 0.00 0.00 2.87
212 214 5.389935 GGTCAGTCACATCAAAATCGAGAAC 60.390 44.000 0.00 0.00 0.00 3.01
216 218 3.678072 TCACATCAAAATCGAGAACCGTC 59.322 43.478 0.00 0.00 39.75 4.79
218 220 4.862574 CACATCAAAATCGAGAACCGTCTA 59.137 41.667 0.00 0.00 39.75 2.59
219 221 5.004821 CACATCAAAATCGAGAACCGTCTAG 59.995 44.000 0.00 0.00 39.75 2.43
221 223 4.982999 TCAAAATCGAGAACCGTCTAGAG 58.017 43.478 0.00 0.00 38.69 2.43
222 224 4.458295 TCAAAATCGAGAACCGTCTAGAGT 59.542 41.667 0.00 0.00 38.69 3.24
223 225 5.645067 TCAAAATCGAGAACCGTCTAGAGTA 59.355 40.000 0.00 0.00 38.69 2.59
224 226 6.149973 TCAAAATCGAGAACCGTCTAGAGTAA 59.850 38.462 0.00 0.00 38.69 2.24
225 227 5.738118 AATCGAGAACCGTCTAGAGTAAG 57.262 43.478 0.00 0.00 38.69 2.34
226 228 4.462508 TCGAGAACCGTCTAGAGTAAGA 57.537 45.455 0.00 0.00 39.75 2.10
227 229 4.825422 TCGAGAACCGTCTAGAGTAAGAA 58.175 43.478 0.00 0.00 39.75 2.52
237 239 5.966503 CGTCTAGAGTAAGAACTGAAATCCG 59.033 44.000 0.00 0.00 35.56 4.18
244 247 3.336138 AGAACTGAAATCCGTCCTTCC 57.664 47.619 0.00 0.00 0.00 3.46
255 258 3.503365 TCCGTCCTTCCTCTCTGTTTTA 58.497 45.455 0.00 0.00 0.00 1.52
262 265 4.202472 CCTTCCTCTCTGTTTTAGGTTGGT 60.202 45.833 0.00 0.00 0.00 3.67
266 269 4.887655 CCTCTCTGTTTTAGGTTGGTGTTT 59.112 41.667 0.00 0.00 0.00 2.83
270 273 6.488683 TCTCTGTTTTAGGTTGGTGTTTATGG 59.511 38.462 0.00 0.00 0.00 2.74
272 275 4.589374 TGTTTTAGGTTGGTGTTTATGGGG 59.411 41.667 0.00 0.00 0.00 4.96
286 290 0.796255 ATGGGGTTTGGGGGATTTCA 59.204 50.000 0.00 0.00 0.00 2.69
288 292 1.061346 TGGGGTTTGGGGGATTTCAAA 60.061 47.619 0.00 0.00 0.00 2.69
302 306 6.040955 GGGGATTTCAAAATCATCTAGGGTTC 59.959 42.308 15.35 0.00 45.10 3.62
303 307 6.040955 GGGATTTCAAAATCATCTAGGGTTCC 59.959 42.308 15.35 2.38 45.10 3.62
305 309 7.201857 GGATTTCAAAATCATCTAGGGTTCCTG 60.202 40.741 15.35 0.00 45.10 3.86
333 337 5.384063 TTTTGTTGCCATGTATGTACTGG 57.616 39.130 0.00 0.00 0.00 4.00
336 340 4.402829 TGTTGCCATGTATGTACTGGTTT 58.597 39.130 0.00 0.00 32.42 3.27
337 341 4.217334 TGTTGCCATGTATGTACTGGTTTG 59.783 41.667 0.00 0.00 32.42 2.93
338 342 4.293662 TGCCATGTATGTACTGGTTTGA 57.706 40.909 0.00 0.00 32.42 2.69
340 344 5.260424 TGCCATGTATGTACTGGTTTGATT 58.740 37.500 0.00 0.00 32.42 2.57
341 345 5.125257 TGCCATGTATGTACTGGTTTGATTG 59.875 40.000 0.00 0.00 32.42 2.67
343 347 5.067674 CCATGTATGTACTGGTTTGATTGGG 59.932 44.000 0.00 0.00 0.00 4.12
344 348 5.249780 TGTATGTACTGGTTTGATTGGGT 57.750 39.130 0.00 0.00 0.00 4.51
345 349 6.375830 TGTATGTACTGGTTTGATTGGGTA 57.624 37.500 0.00 0.00 0.00 3.69
346 350 6.780901 TGTATGTACTGGTTTGATTGGGTAA 58.219 36.000 0.00 0.00 0.00 2.85
347 351 6.882140 TGTATGTACTGGTTTGATTGGGTAAG 59.118 38.462 0.00 0.00 0.00 2.34
349 353 5.067273 TGTACTGGTTTGATTGGGTAAGTG 58.933 41.667 0.00 0.00 0.00 3.16
352 356 4.141287 CTGGTTTGATTGGGTAAGTGTGA 58.859 43.478 0.00 0.00 0.00 3.58
353 357 3.886505 TGGTTTGATTGGGTAAGTGTGAC 59.113 43.478 0.00 0.00 0.00 3.67
355 359 5.163184 TGGTTTGATTGGGTAAGTGTGACTA 60.163 40.000 0.00 0.00 0.00 2.59
356 360 5.944007 GGTTTGATTGGGTAAGTGTGACTAT 59.056 40.000 0.00 0.00 0.00 2.12
357 361 7.107542 GGTTTGATTGGGTAAGTGTGACTATA 58.892 38.462 0.00 0.00 0.00 1.31
358 362 7.608761 GGTTTGATTGGGTAAGTGTGACTATAA 59.391 37.037 0.00 0.00 0.00 0.98
359 363 9.174166 GTTTGATTGGGTAAGTGTGACTATAAT 57.826 33.333 0.00 0.00 0.00 1.28
360 364 8.731275 TTGATTGGGTAAGTGTGACTATAATG 57.269 34.615 0.00 0.00 0.00 1.90
368 375 7.599245 GGTAAGTGTGACTATAATGTATGCTCC 59.401 40.741 0.00 0.00 0.00 4.70
369 376 6.731292 AGTGTGACTATAATGTATGCTCCA 57.269 37.500 0.00 0.00 0.00 3.86
379 386 3.297134 TGTATGCTCCAATTTCCCTCC 57.703 47.619 0.00 0.00 0.00 4.30
380 387 2.222027 GTATGCTCCAATTTCCCTCCG 58.778 52.381 0.00 0.00 0.00 4.63
381 388 0.918983 ATGCTCCAATTTCCCTCCGA 59.081 50.000 0.00 0.00 0.00 4.55
382 389 0.918983 TGCTCCAATTTCCCTCCGAT 59.081 50.000 0.00 0.00 0.00 4.18
387 394 4.505742 GCTCCAATTTCCCTCCGATTAGAT 60.506 45.833 0.00 0.00 0.00 1.98
388 395 4.973168 TCCAATTTCCCTCCGATTAGATG 58.027 43.478 0.00 0.00 0.00 2.90
397 404 4.508662 CCTCCGATTAGATGATTTAGGGC 58.491 47.826 0.00 0.00 0.00 5.19
400 407 4.593206 TCCGATTAGATGATTTAGGGCTGT 59.407 41.667 0.00 0.00 0.00 4.40
403 410 6.073003 CCGATTAGATGATTTAGGGCTGTTTC 60.073 42.308 0.00 0.00 0.00 2.78
408 415 5.649831 AGATGATTTAGGGCTGTTTCAGTTC 59.350 40.000 0.00 0.00 33.43 3.01
414 421 2.972713 AGGGCTGTTTCAGTTCTGACTA 59.027 45.455 1.72 0.00 33.90 2.59
417 424 4.578928 GGGCTGTTTCAGTTCTGACTAAAA 59.421 41.667 1.72 0.00 33.90 1.52
423 430 9.787532 CTGTTTCAGTTCTGACTAAAATGAAAA 57.212 29.630 11.52 4.38 46.11 2.29
424 431 9.787532 TGTTTCAGTTCTGACTAAAATGAAAAG 57.212 29.630 11.52 0.00 46.11 2.27
427 434 8.964476 TCAGTTCTGACTAAAATGAAAAGAGT 57.036 30.769 0.00 0.00 33.90 3.24
494 501 4.461781 GGCATGGATCCTTTGGATTATCTG 59.538 45.833 14.23 0.00 43.27 2.90
506 513 7.201767 CCTTTGGATTATCTGTCAATCAGGTTC 60.202 40.741 0.00 0.00 43.76 3.62
513 520 4.984295 TCTGTCAATCAGGTTCCATTTCA 58.016 39.130 0.00 0.00 43.76 2.69
519 526 2.631384 TCAGGTTCCATTTCAGAGGGA 58.369 47.619 0.00 0.00 0.00 4.20
521 528 3.593328 TCAGGTTCCATTTCAGAGGGAAT 59.407 43.478 0.00 0.00 42.25 3.01
525 532 5.846164 AGGTTCCATTTCAGAGGGAATTTTT 59.154 36.000 0.00 0.00 42.25 1.94
562 569 1.003812 GTGGCAGTATGTGGGTGGTAA 59.996 52.381 0.00 0.00 39.31 2.85
569 576 2.990740 ATGTGGGTGGTAAACATGGT 57.009 45.000 0.00 0.00 33.37 3.55
572 579 5.718801 ATGTGGGTGGTAAACATGGTATA 57.281 39.130 0.00 0.00 33.37 1.47
602 609 4.090761 TCATCTGTCAAAACTGAGCCTT 57.909 40.909 0.00 0.00 36.87 4.35
609 616 4.889409 TGTCAAAACTGAGCCTTGAAGAAT 59.111 37.500 0.00 0.00 31.21 2.40
626 633 7.164226 TGAAGAATTGAAAAACAATCTTGCG 57.836 32.000 0.00 0.00 46.90 4.85
636 643 1.541147 ACAATCTTGCGGACCATGTTG 59.459 47.619 0.00 0.00 0.00 3.33
637 644 0.527565 AATCTTGCGGACCATGTTGC 59.472 50.000 0.00 0.00 0.00 4.17
646 653 1.203052 GGACCATGTTGCATGTTCAGG 59.797 52.381 8.49 0.00 0.00 3.86
647 654 2.161855 GACCATGTTGCATGTTCAGGA 58.838 47.619 8.11 0.00 0.00 3.86
653 660 2.694628 TGTTGCATGTTCAGGAAAAGCT 59.305 40.909 0.00 0.00 0.00 3.74
656 663 2.555325 TGCATGTTCAGGAAAAGCTCTG 59.445 45.455 0.00 0.00 0.00 3.35
675 806 9.499479 AAGCTCTGAAGTTATGGACATATATTG 57.501 33.333 0.00 0.00 0.00 1.90
676 807 8.654997 AGCTCTGAAGTTATGGACATATATTGT 58.345 33.333 0.00 0.00 42.79 2.71
698 829 8.777865 TTGTAAGATACCTGATGAGTTTTCAG 57.222 34.615 0.00 0.00 40.25 3.02
699 830 8.134202 TGTAAGATACCTGATGAGTTTTCAGA 57.866 34.615 2.36 0.00 42.63 3.27
700 831 8.253810 TGTAAGATACCTGATGAGTTTTCAGAG 58.746 37.037 2.36 0.00 42.63 3.35
701 832 6.232581 AGATACCTGATGAGTTTTCAGAGG 57.767 41.667 2.36 0.00 42.63 3.69
702 833 5.960811 AGATACCTGATGAGTTTTCAGAGGA 59.039 40.000 10.68 0.00 42.63 3.71
703 834 4.982241 ACCTGATGAGTTTTCAGAGGAA 57.018 40.909 10.68 0.00 42.63 3.36
704 835 4.904241 ACCTGATGAGTTTTCAGAGGAAG 58.096 43.478 10.68 0.00 42.63 3.46
705 836 4.594920 ACCTGATGAGTTTTCAGAGGAAGA 59.405 41.667 10.68 0.00 42.63 2.87
706 837 5.177326 CCTGATGAGTTTTCAGAGGAAGAG 58.823 45.833 2.36 0.00 42.63 2.85
707 838 5.157940 TGATGAGTTTTCAGAGGAAGAGG 57.842 43.478 0.00 0.00 36.61 3.69
708 839 3.409026 TGAGTTTTCAGAGGAAGAGGC 57.591 47.619 0.00 0.00 33.82 4.70
709 840 2.975489 TGAGTTTTCAGAGGAAGAGGCT 59.025 45.455 0.00 0.00 33.82 4.58
710 841 4.160329 TGAGTTTTCAGAGGAAGAGGCTA 58.840 43.478 0.00 0.00 33.82 3.93
711 842 4.221703 TGAGTTTTCAGAGGAAGAGGCTAG 59.778 45.833 0.00 0.00 33.82 3.42
712 843 4.164204 AGTTTTCAGAGGAAGAGGCTAGT 58.836 43.478 0.00 0.00 33.82 2.57
713 844 4.020662 AGTTTTCAGAGGAAGAGGCTAGTG 60.021 45.833 0.00 0.00 33.82 2.74
714 845 3.458044 TTCAGAGGAAGAGGCTAGTGA 57.542 47.619 0.00 0.00 0.00 3.41
715 846 2.729194 TCAGAGGAAGAGGCTAGTGAC 58.271 52.381 0.00 0.00 0.00 3.67
716 847 2.310349 TCAGAGGAAGAGGCTAGTGACT 59.690 50.000 0.00 0.00 0.00 3.41
717 848 2.426738 CAGAGGAAGAGGCTAGTGACTG 59.573 54.545 0.00 0.00 0.00 3.51
718 849 1.754226 GAGGAAGAGGCTAGTGACTGG 59.246 57.143 0.00 0.00 0.00 4.00
719 850 0.827368 GGAAGAGGCTAGTGACTGGG 59.173 60.000 0.00 0.00 0.00 4.45
727 858 1.686052 GCTAGTGACTGGGAGGATGAG 59.314 57.143 0.00 0.00 0.00 2.90
728 859 1.686052 CTAGTGACTGGGAGGATGAGC 59.314 57.143 0.00 0.00 0.00 4.26
734 865 0.106868 CTGGGAGGATGAGCATGCAA 60.107 55.000 21.98 8.14 0.00 4.08
739 870 1.948145 GAGGATGAGCATGCAAAGGAG 59.052 52.381 21.98 0.00 0.00 3.69
748 879 3.114527 TGCAAAGGAGCAGCAAGAA 57.885 47.368 0.00 0.00 40.11 2.52
751 882 1.271656 GCAAAGGAGCAGCAAGAACAT 59.728 47.619 0.00 0.00 0.00 2.71
752 883 2.489329 GCAAAGGAGCAGCAAGAACATA 59.511 45.455 0.00 0.00 0.00 2.29
754 885 4.732938 GCAAAGGAGCAGCAAGAACATATC 60.733 45.833 0.00 0.00 0.00 1.63
760 891 2.799412 GCAGCAAGAACATATCGAGGAG 59.201 50.000 0.00 0.00 0.00 3.69
761 892 2.799412 CAGCAAGAACATATCGAGGAGC 59.201 50.000 0.00 0.00 0.00 4.70
762 893 2.432146 AGCAAGAACATATCGAGGAGCA 59.568 45.455 0.00 0.00 0.00 4.26
763 894 2.799412 GCAAGAACATATCGAGGAGCAG 59.201 50.000 0.00 0.00 0.00 4.24
764 895 2.799412 CAAGAACATATCGAGGAGCAGC 59.201 50.000 0.00 0.00 0.00 5.25
765 896 2.034878 AGAACATATCGAGGAGCAGCA 58.965 47.619 0.00 0.00 0.00 4.41
766 897 2.035704 AGAACATATCGAGGAGCAGCAG 59.964 50.000 0.00 0.00 0.00 4.24
767 898 0.033228 ACATATCGAGGAGCAGCAGC 59.967 55.000 0.00 0.00 42.56 5.25
768 899 0.033090 CATATCGAGGAGCAGCAGCA 59.967 55.000 3.17 0.00 45.49 4.41
769 900 0.755079 ATATCGAGGAGCAGCAGCAA 59.245 50.000 3.17 0.00 45.49 3.91
770 901 0.179100 TATCGAGGAGCAGCAGCAAC 60.179 55.000 3.17 0.00 45.49 4.17
771 902 2.176314 ATCGAGGAGCAGCAGCAACA 62.176 55.000 3.17 0.00 45.49 3.33
772 903 1.744368 CGAGGAGCAGCAGCAACAT 60.744 57.895 3.17 0.00 45.49 2.71
773 904 1.801332 GAGGAGCAGCAGCAACATG 59.199 57.895 3.17 0.00 45.49 3.21
774 905 0.959372 GAGGAGCAGCAGCAACATGT 60.959 55.000 3.17 0.00 45.49 3.21
775 906 0.325933 AGGAGCAGCAGCAACATGTA 59.674 50.000 3.17 0.00 45.49 2.29
776 907 0.731417 GGAGCAGCAGCAACATGTAG 59.269 55.000 3.17 0.00 45.49 2.74
777 908 1.676916 GGAGCAGCAGCAACATGTAGA 60.677 52.381 3.17 0.00 45.49 2.59
778 909 1.664659 GAGCAGCAGCAACATGTAGAG 59.335 52.381 3.17 0.00 45.49 2.43
779 910 0.731417 GCAGCAGCAACATGTAGAGG 59.269 55.000 0.00 0.00 41.58 3.69
780 911 1.676916 GCAGCAGCAACATGTAGAGGA 60.677 52.381 0.00 0.00 41.58 3.71
784 915 2.741228 GCAGCAACATGTAGAGGAGGAG 60.741 54.545 0.00 0.00 0.00 3.69
786 917 1.804372 GCAACATGTAGAGGAGGAGCG 60.804 57.143 0.00 0.00 0.00 5.03
788 919 1.394618 ACATGTAGAGGAGGAGCGAC 58.605 55.000 0.00 0.00 0.00 5.19
789 920 0.309302 CATGTAGAGGAGGAGCGACG 59.691 60.000 0.00 0.00 0.00 5.12
792 923 0.743701 GTAGAGGAGGAGCGACGACA 60.744 60.000 0.00 0.00 0.00 4.35
793 924 0.035725 TAGAGGAGGAGCGACGACAA 60.036 55.000 0.00 0.00 0.00 3.18
796 927 1.006571 GGAGGAGCGACGACAACAA 60.007 57.895 0.00 0.00 0.00 2.83
797 928 0.599204 GGAGGAGCGACGACAACAAA 60.599 55.000 0.00 0.00 0.00 2.83
802 933 2.124903 GAGCGACGACAACAAAGAGAA 58.875 47.619 0.00 0.00 0.00 2.87
813 944 1.163554 CAAAGAGAAGACCAGCAGCC 58.836 55.000 0.00 0.00 0.00 4.85
815 946 0.767375 AAGAGAAGACCAGCAGCCAA 59.233 50.000 0.00 0.00 0.00 4.52
819 950 0.108945 GAAGACCAGCAGCCAAATGC 60.109 55.000 0.00 0.00 46.88 3.56
826 957 3.715854 GCAGCCAAATGCAGAAGAG 57.284 52.632 0.00 0.00 45.77 2.85
827 958 0.458025 GCAGCCAAATGCAGAAGAGC 60.458 55.000 0.00 0.00 45.77 4.09
828 959 0.179171 CAGCCAAATGCAGAAGAGCG 60.179 55.000 0.00 0.00 44.83 5.03
829 960 1.138247 GCCAAATGCAGAAGAGCGG 59.862 57.895 0.00 0.00 40.77 5.52
830 961 1.138247 CCAAATGCAGAAGAGCGGC 59.862 57.895 0.00 0.00 38.26 6.53
834 965 2.743060 TGCAGAAGAGCGGCAGAA 59.257 55.556 1.45 0.00 42.82 3.02
835 966 1.071299 TGCAGAAGAGCGGCAGAAA 59.929 52.632 1.45 0.00 42.82 2.52
836 967 0.534877 TGCAGAAGAGCGGCAGAAAA 60.535 50.000 1.45 0.00 42.82 2.29
837 968 0.593128 GCAGAAGAGCGGCAGAAAAA 59.407 50.000 1.45 0.00 37.65 1.94
838 969 1.200948 GCAGAAGAGCGGCAGAAAAAT 59.799 47.619 1.45 0.00 37.65 1.82
839 970 2.352127 GCAGAAGAGCGGCAGAAAAATT 60.352 45.455 1.45 0.00 37.65 1.82
840 971 3.496155 CAGAAGAGCGGCAGAAAAATTC 58.504 45.455 1.45 0.00 0.00 2.17
841 972 3.058016 CAGAAGAGCGGCAGAAAAATTCA 60.058 43.478 1.45 0.00 0.00 2.57
842 973 3.190118 AGAAGAGCGGCAGAAAAATTCAG 59.810 43.478 1.45 0.00 0.00 3.02
843 974 2.783135 AGAGCGGCAGAAAAATTCAGA 58.217 42.857 1.45 0.00 0.00 3.27
844 975 2.746362 AGAGCGGCAGAAAAATTCAGAG 59.254 45.455 1.45 0.00 0.00 3.35
845 976 2.744202 GAGCGGCAGAAAAATTCAGAGA 59.256 45.455 1.45 0.00 0.00 3.10
846 977 3.149196 AGCGGCAGAAAAATTCAGAGAA 58.851 40.909 1.45 0.00 0.00 2.87
847 978 3.569701 AGCGGCAGAAAAATTCAGAGAAA 59.430 39.130 1.45 0.00 0.00 2.52
848 979 3.670523 GCGGCAGAAAAATTCAGAGAAAC 59.329 43.478 0.00 0.00 0.00 2.78
849 980 4.792704 GCGGCAGAAAAATTCAGAGAAACA 60.793 41.667 0.00 0.00 0.00 2.83
850 981 4.913924 CGGCAGAAAAATTCAGAGAAACAG 59.086 41.667 0.00 0.00 0.00 3.16
851 982 5.506317 CGGCAGAAAAATTCAGAGAAACAGT 60.506 40.000 0.00 0.00 0.00 3.55
852 983 5.689068 GGCAGAAAAATTCAGAGAAACAGTG 59.311 40.000 0.00 0.00 0.00 3.66
853 984 5.689068 GCAGAAAAATTCAGAGAAACAGTGG 59.311 40.000 0.00 0.00 0.00 4.00
854 985 5.689068 CAGAAAAATTCAGAGAAACAGTGGC 59.311 40.000 0.00 0.00 0.00 5.01
855 986 5.360714 AGAAAAATTCAGAGAAACAGTGGCA 59.639 36.000 0.00 0.00 0.00 4.92
856 987 4.843220 AAATTCAGAGAAACAGTGGCAG 57.157 40.909 0.00 0.00 0.00 4.85
857 988 1.597742 TTCAGAGAAACAGTGGCAGC 58.402 50.000 0.00 0.00 0.00 5.25
858 989 0.469494 TCAGAGAAACAGTGGCAGCA 59.531 50.000 0.00 0.00 0.00 4.41
859 990 1.072806 TCAGAGAAACAGTGGCAGCAT 59.927 47.619 0.00 0.00 0.00 3.79
860 991 2.302733 TCAGAGAAACAGTGGCAGCATA 59.697 45.455 0.00 0.00 0.00 3.14
861 992 3.076621 CAGAGAAACAGTGGCAGCATAA 58.923 45.455 0.00 0.00 0.00 1.90
862 993 3.693085 CAGAGAAACAGTGGCAGCATAAT 59.307 43.478 0.00 0.00 0.00 1.28
863 994 3.693085 AGAGAAACAGTGGCAGCATAATG 59.307 43.478 0.00 0.00 0.00 1.90
864 995 2.165030 AGAAACAGTGGCAGCATAATGC 59.835 45.455 0.00 0.00 45.46 3.56
897 1028 4.142093 GGAGCAGCACAATAATCCAAATGT 60.142 41.667 0.00 0.00 0.00 2.71
901 1032 6.039047 AGCAGCACAATAATCCAAATGTAGAG 59.961 38.462 0.00 0.00 0.00 2.43
904 1035 6.769822 AGCACAATAATCCAAATGTAGAGGAG 59.230 38.462 0.00 0.00 34.40 3.69
905 1036 6.767902 GCACAATAATCCAAATGTAGAGGAGA 59.232 38.462 0.00 0.00 34.40 3.71
932 1064 3.755378 ACTAGAACCAGAAGCTTGCAATG 59.245 43.478 2.10 0.00 0.00 2.82
959 1091 7.973402 TCAAATATCTATTACCAGCCTAGCAA 58.027 34.615 0.00 0.00 0.00 3.91
960 1092 7.878127 TCAAATATCTATTACCAGCCTAGCAAC 59.122 37.037 0.00 0.00 0.00 4.17
963 1095 4.286707 TCTATTACCAGCCTAGCAACAGA 58.713 43.478 0.00 0.00 0.00 3.41
965 1097 3.780804 TTACCAGCCTAGCAACAGAAA 57.219 42.857 0.00 0.00 0.00 2.52
990 1122 3.795688 AAATTGCCAGTGAAGAGAGGA 57.204 42.857 0.00 0.00 0.00 3.71
994 1126 0.392327 GCCAGTGAAGAGAGGAAGCC 60.392 60.000 0.00 0.00 0.00 4.35
1012 1144 0.247185 CCGCCAAATGCAGGACAAAT 59.753 50.000 0.00 0.00 41.33 2.32
1021 1153 5.486735 AATGCAGGACAAATGGAAATCAA 57.513 34.783 0.00 0.00 0.00 2.57
1049 1184 5.655488 AGATGAGTATGAAGTACACACTGC 58.345 41.667 0.00 0.00 36.30 4.40
1064 1199 3.942351 CTGCAAGTGATGGGTCTGA 57.058 52.632 0.00 0.00 0.00 3.27
1065 1200 2.189594 CTGCAAGTGATGGGTCTGAA 57.810 50.000 0.00 0.00 0.00 3.02
1066 1201 2.719739 CTGCAAGTGATGGGTCTGAAT 58.280 47.619 0.00 0.00 0.00 2.57
1067 1202 2.681848 CTGCAAGTGATGGGTCTGAATC 59.318 50.000 0.00 0.00 0.00 2.52
1068 1203 2.040145 TGCAAGTGATGGGTCTGAATCA 59.960 45.455 0.00 0.00 0.00 2.57
1069 1204 2.681848 GCAAGTGATGGGTCTGAATCAG 59.318 50.000 3.38 3.38 33.58 2.90
1070 1205 3.620719 GCAAGTGATGGGTCTGAATCAGA 60.621 47.826 9.18 9.18 38.25 3.27
1095 1230 2.705658 CAGTGACTATGCTATTCCCCCA 59.294 50.000 0.00 0.00 0.00 4.96
1143 1281 4.462508 TGATGAAGTGCTAGAGTTGAGG 57.537 45.455 0.00 0.00 0.00 3.86
1227 1366 1.546923 CCATGCAATGTGCCTGAAGAA 59.453 47.619 7.03 0.00 44.81 2.52
1234 1373 7.167924 TGCAATGTGCCTGAAGAATTTATTA 57.832 32.000 0.00 0.00 44.23 0.98
1275 1414 5.245751 GCTAGATGATTCAGATGGAGAAGGA 59.754 44.000 0.00 0.00 0.00 3.36
1287 1426 6.261826 CAGATGGAGAAGGAACACCATATTTC 59.738 42.308 0.00 0.00 40.28 2.17
1321 1466 5.363562 TGACTTGTCATATGATGAAGGCT 57.636 39.130 23.70 10.50 41.69 4.58
1350 1495 5.780282 TGGAGAGGTAAATGAAGTGAGAAGA 59.220 40.000 0.00 0.00 0.00 2.87
1373 1518 5.722021 AGGAAAACAACACACAGAGTTTT 57.278 34.783 0.00 0.00 44.22 2.43
1407 1552 4.202050 ACTGACAAACCAGAATTTGCTGTC 60.202 41.667 0.00 0.00 42.29 3.51
1422 1567 0.527113 CTGTCGGCATGGCATTTCAA 59.473 50.000 20.37 0.00 0.00 2.69
1543 1688 0.474854 TTCCTGGCCTGGTTGTCCTA 60.475 55.000 26.40 4.22 34.23 2.94
1601 1746 5.080969 TGGTTGCTAGTTGTGAGGTATAC 57.919 43.478 0.00 0.00 0.00 1.47
1747 2210 3.886505 CGGTACTTGAGGATCTTCTAGCT 59.113 47.826 14.60 0.00 34.92 3.32
1750 2214 5.009610 GGTACTTGAGGATCTTCTAGCTGAG 59.990 48.000 14.60 0.00 34.92 3.35
1822 2286 5.163814 GCTCACTGATTTGACTAATGGTGAC 60.164 44.000 9.31 5.73 34.61 3.67
1837 2301 9.563748 ACTAATGGTGACTATTCTAGAGTCTAC 57.436 37.037 10.85 7.82 43.19 2.59
2003 2494 2.450479 GAAGGGGTCAGTGTCCGGTG 62.450 65.000 0.00 0.00 0.00 4.94
2013 2504 5.172934 GTCAGTGTCCGGTGAAATATTGTA 58.827 41.667 0.00 0.00 0.00 2.41
2035 2526 3.699411 GCTATTGGCAGAGATGGAGAT 57.301 47.619 2.90 0.00 41.35 2.75
2036 2527 3.336468 GCTATTGGCAGAGATGGAGATG 58.664 50.000 2.90 0.00 41.35 2.90
2037 2528 3.244491 GCTATTGGCAGAGATGGAGATGT 60.244 47.826 2.90 0.00 41.35 3.06
2038 2529 2.704464 TTGGCAGAGATGGAGATGTG 57.296 50.000 0.00 0.00 0.00 3.21
2039 2530 1.576577 TGGCAGAGATGGAGATGTGT 58.423 50.000 0.00 0.00 0.00 3.72
2066 2571 3.010420 GGCTACAGTTGAGGTTGAATCC 58.990 50.000 0.00 0.00 0.00 3.01
2087 2592 4.405680 TCCTATGACTCATGGTACTGGTTG 59.594 45.833 1.42 0.00 0.00 3.77
2089 2594 1.696884 TGACTCATGGTACTGGTTGCA 59.303 47.619 0.00 0.00 0.00 4.08
2090 2595 2.305635 TGACTCATGGTACTGGTTGCAT 59.694 45.455 0.00 0.00 0.00 3.96
2091 2596 2.679837 GACTCATGGTACTGGTTGCATG 59.320 50.000 0.00 0.00 0.00 4.06
2102 3101 0.108662 GGTTGCATGGCCAAACTAGC 60.109 55.000 10.96 10.08 29.86 3.42
2120 3121 0.249868 GCCCCAAAAAGTGTGGAAGC 60.250 55.000 0.00 0.00 38.54 3.86
2134 3135 3.008375 TGTGGAAGCAGCTAAAGACATCT 59.992 43.478 0.00 0.00 0.00 2.90
2149 3150 3.953612 AGACATCTTGAAAACTGCACCAA 59.046 39.130 0.00 0.00 0.00 3.67
2172 3173 0.257039 ATTGGAGCAGGGCCTACTTG 59.743 55.000 5.28 0.00 0.00 3.16
2196 3197 2.037251 GCTAGGTTCTTGGTGTGACTCA 59.963 50.000 0.00 0.00 0.00 3.41
2220 3221 6.259608 CAGTGGAGAATAATCTGTGTGAATCC 59.740 42.308 0.00 0.00 35.54 3.01
2307 3308 4.879295 AATGGTGATGGTAAGGATCCAA 57.121 40.909 15.82 0.00 38.52 3.53
2318 3319 6.357367 TGGTAAGGATCCAAGAAAATAGAGC 58.643 40.000 15.82 0.00 31.50 4.09
2322 3343 9.614792 GTAAGGATCCAAGAAAATAGAGCTAAA 57.385 33.333 15.82 0.00 0.00 1.85
2336 3361 5.841957 AGAGCTAAACATTTGCCCTAATG 57.158 39.130 0.00 0.00 40.53 1.90
2375 3400 3.007290 TGAACATCAAGAGGTCAGGACTG 59.993 47.826 0.00 0.00 0.00 3.51
2376 3401 1.277557 ACATCAAGAGGTCAGGACTGC 59.722 52.381 0.00 0.00 0.00 4.40
2444 3469 2.233676 TGTGCATAGGAGGTACACAGTG 59.766 50.000 0.00 0.00 36.39 3.66
2472 3497 1.203052 AGGCATGGAAATGTTCTTGCG 59.797 47.619 0.00 0.00 38.65 4.85
2533 3558 5.963176 ATCAGTGCAATTTACACATGTGA 57.037 34.783 31.94 10.65 40.59 3.58
2584 3710 3.899980 TGCTACTCATAGAGTGATGCCAT 59.100 43.478 9.78 0.00 43.30 4.40
2592 3718 6.053650 TCATAGAGTGATGCCATGAAGAAAG 58.946 40.000 0.00 0.00 0.00 2.62
2598 3724 4.456911 GTGATGCCATGAAGAAAGAAGACA 59.543 41.667 0.00 0.00 0.00 3.41
2634 3763 1.636003 GGTGAGAAACCTCAGGGGAAT 59.364 52.381 0.00 0.00 46.55 3.01
2646 3775 4.958581 CCTCAGGGGAATAAGCTTTCAAAT 59.041 41.667 3.20 0.00 37.23 2.32
2652 3781 7.124147 CAGGGGAATAAGCTTTCAAATAAAGGA 59.876 37.037 3.20 0.00 0.00 3.36
2691 3820 3.499338 TGTTTGTGGGAGCTTTGATCAT 58.501 40.909 0.00 0.00 0.00 2.45
2694 3823 5.716228 TGTTTGTGGGAGCTTTGATCATAAT 59.284 36.000 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.887335 TTAGACCGCACCAACCCGC 62.887 63.158 0.00 0.00 0.00 6.13
1 2 0.675522 AATTAGACCGCACCAACCCG 60.676 55.000 0.00 0.00 0.00 5.28
2 3 0.808755 CAATTAGACCGCACCAACCC 59.191 55.000 0.00 0.00 0.00 4.11
3 4 1.467342 GTCAATTAGACCGCACCAACC 59.533 52.381 0.00 0.00 41.56 3.77
4 5 2.894307 GTCAATTAGACCGCACCAAC 57.106 50.000 0.00 0.00 41.56 3.77
18 19 0.991920 ATCGGTTCAGGTGGGTCAAT 59.008 50.000 0.00 0.00 0.00 2.57
19 20 0.768622 AATCGGTTCAGGTGGGTCAA 59.231 50.000 0.00 0.00 0.00 3.18
26 27 1.189524 TGGGTCGAATCGGTTCAGGT 61.190 55.000 9.48 0.00 33.86 4.00
29 30 1.079405 GCTGGGTCGAATCGGTTCA 60.079 57.895 9.48 0.00 33.86 3.18
32 33 2.579201 CTGCTGGGTCGAATCGGT 59.421 61.111 1.76 0.00 0.00 4.69
34 35 2.892425 GGCTGCTGGGTCGAATCG 60.892 66.667 0.00 0.00 0.00 3.34
36 37 2.424842 TTTGGGCTGCTGGGTCGAAT 62.425 55.000 0.00 0.00 0.00 3.34
48 49 2.044946 GCAGGGTCGATTTGGGCT 60.045 61.111 0.00 0.00 0.00 5.19
53 54 1.322538 GCAATGGGCAGGGTCGATTT 61.323 55.000 0.00 0.00 43.97 2.17
54 55 1.754234 GCAATGGGCAGGGTCGATT 60.754 57.895 0.00 0.00 43.97 3.34
55 56 2.124151 GCAATGGGCAGGGTCGAT 60.124 61.111 0.00 0.00 43.97 3.59
75 76 1.219393 GAGGAGAAGGGTGGCGAAG 59.781 63.158 0.00 0.00 0.00 3.79
82 83 1.306226 CGGGGAAGAGGAGAAGGGT 60.306 63.158 0.00 0.00 0.00 4.34
89 90 3.387947 GGAACGCGGGGAAGAGGA 61.388 66.667 12.47 0.00 0.00 3.71
90 91 4.468689 GGGAACGCGGGGAAGAGG 62.469 72.222 12.47 0.00 0.00 3.69
100 101 2.295602 TGGGAGGTAAGGGGAACGC 61.296 63.158 0.00 0.00 43.76 4.84
101 102 1.600638 GTGGGAGGTAAGGGGAACG 59.399 63.158 0.00 0.00 0.00 3.95
102 103 1.600638 CGTGGGAGGTAAGGGGAAC 59.399 63.158 0.00 0.00 0.00 3.62
103 104 1.614226 CCGTGGGAGGTAAGGGGAA 60.614 63.158 0.00 0.00 0.00 3.97
104 105 2.039951 CCGTGGGAGGTAAGGGGA 59.960 66.667 0.00 0.00 0.00 4.81
105 106 3.793888 GCCGTGGGAGGTAAGGGG 61.794 72.222 0.00 0.00 0.00 4.79
106 107 4.157120 CGCCGTGGGAGGTAAGGG 62.157 72.222 0.00 0.00 0.00 3.95
107 108 4.157120 CCGCCGTGGGAGGTAAGG 62.157 72.222 0.00 0.00 37.88 2.69
140 141 0.102300 TTCATGCCGTCGATCGTCAT 59.898 50.000 15.94 11.25 38.70 3.06
144 145 0.525455 TCAGTTCATGCCGTCGATCG 60.525 55.000 9.36 9.36 39.52 3.69
145 146 1.202302 TCTCAGTTCATGCCGTCGATC 60.202 52.381 0.00 0.00 0.00 3.69
180 182 2.700371 TGATGTGACTGACCTGTTGTCT 59.300 45.455 0.00 0.00 44.75 3.41
185 187 3.748048 CGATTTTGATGTGACTGACCTGT 59.252 43.478 0.00 0.00 0.00 4.00
191 193 4.434725 CGGTTCTCGATTTTGATGTGACTG 60.435 45.833 0.00 0.00 42.43 3.51
201 203 6.373774 TCTTACTCTAGACGGTTCTCGATTTT 59.626 38.462 0.00 0.00 42.43 1.82
203 205 5.426504 TCTTACTCTAGACGGTTCTCGATT 58.573 41.667 0.00 0.00 42.43 3.34
206 208 4.630940 AGTTCTTACTCTAGACGGTTCTCG 59.369 45.833 0.00 0.00 45.88 4.04
211 213 6.127675 GGATTTCAGTTCTTACTCTAGACGGT 60.128 42.308 0.00 0.00 30.26 4.83
212 214 6.267070 GGATTTCAGTTCTTACTCTAGACGG 58.733 44.000 0.00 0.00 30.26 4.79
216 218 6.095720 AGGACGGATTTCAGTTCTTACTCTAG 59.904 42.308 0.00 0.00 30.26 2.43
218 220 4.773149 AGGACGGATTTCAGTTCTTACTCT 59.227 41.667 0.00 0.00 30.26 3.24
219 221 5.074584 AGGACGGATTTCAGTTCTTACTC 57.925 43.478 0.00 0.00 30.26 2.59
221 223 4.630505 GGAAGGACGGATTTCAGTTCTTAC 59.369 45.833 4.63 1.95 39.45 2.34
222 224 4.530946 AGGAAGGACGGATTTCAGTTCTTA 59.469 41.667 4.63 0.00 39.45 2.10
223 225 3.328050 AGGAAGGACGGATTTCAGTTCTT 59.672 43.478 4.33 4.33 41.51 2.52
224 226 2.907042 AGGAAGGACGGATTTCAGTTCT 59.093 45.455 0.00 0.00 31.00 3.01
225 227 3.055747 AGAGGAAGGACGGATTTCAGTTC 60.056 47.826 0.00 0.00 0.00 3.01
226 228 2.907042 AGAGGAAGGACGGATTTCAGTT 59.093 45.455 0.00 0.00 0.00 3.16
227 229 2.498078 GAGAGGAAGGACGGATTTCAGT 59.502 50.000 0.00 0.00 0.00 3.41
237 239 4.893829 ACCTAAAACAGAGAGGAAGGAC 57.106 45.455 0.00 0.00 34.24 3.85
244 247 7.308589 CCATAAACACCAACCTAAAACAGAGAG 60.309 40.741 0.00 0.00 0.00 3.20
255 258 2.969262 CAAACCCCATAAACACCAACCT 59.031 45.455 0.00 0.00 0.00 3.50
262 265 1.167943 TCCCCCAAACCCCATAAACA 58.832 50.000 0.00 0.00 0.00 2.83
266 269 2.011467 TGAAATCCCCCAAACCCCATA 58.989 47.619 0.00 0.00 0.00 2.74
270 273 3.329225 TGATTTTGAAATCCCCCAAACCC 59.671 43.478 12.51 0.00 43.19 4.11
272 275 6.053632 AGATGATTTTGAAATCCCCCAAAC 57.946 37.500 12.51 0.00 43.19 2.93
286 290 4.870021 AGCAGGAACCCTAGATGATTTT 57.130 40.909 0.00 0.00 29.64 1.82
288 292 4.870021 AAAGCAGGAACCCTAGATGATT 57.130 40.909 0.00 0.00 29.64 2.57
330 334 4.023193 GTCACACTTACCCAATCAAACCAG 60.023 45.833 0.00 0.00 0.00 4.00
333 337 8.556213 TTATAGTCACACTTACCCAATCAAAC 57.444 34.615 0.00 0.00 0.00 2.93
336 340 7.857456 ACATTATAGTCACACTTACCCAATCA 58.143 34.615 0.00 0.00 0.00 2.57
337 341 9.998106 ATACATTATAGTCACACTTACCCAATC 57.002 33.333 0.00 0.00 0.00 2.67
338 342 9.778741 CATACATTATAGTCACACTTACCCAAT 57.221 33.333 0.00 0.00 0.00 3.16
340 344 7.070696 AGCATACATTATAGTCACACTTACCCA 59.929 37.037 0.00 0.00 0.00 4.51
341 345 7.442656 AGCATACATTATAGTCACACTTACCC 58.557 38.462 0.00 0.00 0.00 3.69
343 347 8.141909 TGGAGCATACATTATAGTCACACTTAC 58.858 37.037 0.00 0.00 0.00 2.34
344 348 8.245195 TGGAGCATACATTATAGTCACACTTA 57.755 34.615 0.00 0.00 0.00 2.24
345 349 7.124573 TGGAGCATACATTATAGTCACACTT 57.875 36.000 0.00 0.00 0.00 3.16
346 350 6.731292 TGGAGCATACATTATAGTCACACT 57.269 37.500 0.00 0.00 0.00 3.55
347 351 7.969536 ATTGGAGCATACATTATAGTCACAC 57.030 36.000 0.00 0.00 0.00 3.82
349 353 8.507249 GGAAATTGGAGCATACATTATAGTCAC 58.493 37.037 0.00 0.00 0.00 3.67
352 356 7.759607 AGGGAAATTGGAGCATACATTATAGT 58.240 34.615 0.00 0.00 0.00 2.12
353 357 7.337942 GGAGGGAAATTGGAGCATACATTATAG 59.662 40.741 0.00 0.00 0.00 1.31
355 359 6.012745 GGAGGGAAATTGGAGCATACATTAT 58.987 40.000 0.00 0.00 0.00 1.28
356 360 5.385198 GGAGGGAAATTGGAGCATACATTA 58.615 41.667 0.00 0.00 0.00 1.90
357 361 4.218312 GGAGGGAAATTGGAGCATACATT 58.782 43.478 0.00 0.00 0.00 2.71
358 362 3.748668 CGGAGGGAAATTGGAGCATACAT 60.749 47.826 0.00 0.00 0.00 2.29
359 363 2.421388 CGGAGGGAAATTGGAGCATACA 60.421 50.000 0.00 0.00 0.00 2.29
360 364 2.158813 TCGGAGGGAAATTGGAGCATAC 60.159 50.000 0.00 0.00 0.00 2.39
368 375 7.516198 AAATCATCTAATCGGAGGGAAATTG 57.484 36.000 0.00 0.00 0.00 2.32
369 376 7.885399 CCTAAATCATCTAATCGGAGGGAAATT 59.115 37.037 0.00 0.00 0.00 1.82
379 386 6.483307 TGAAACAGCCCTAAATCATCTAATCG 59.517 38.462 0.00 0.00 0.00 3.34
380 387 7.500559 ACTGAAACAGCCCTAAATCATCTAATC 59.499 37.037 0.00 0.00 34.37 1.75
381 388 7.349598 ACTGAAACAGCCCTAAATCATCTAAT 58.650 34.615 0.00 0.00 34.37 1.73
382 389 6.721318 ACTGAAACAGCCCTAAATCATCTAA 58.279 36.000 0.00 0.00 34.37 2.10
387 394 4.761739 CAGAACTGAAACAGCCCTAAATCA 59.238 41.667 0.00 0.00 34.37 2.57
388 395 5.003804 TCAGAACTGAAACAGCCCTAAATC 58.996 41.667 1.79 0.00 36.53 2.17
397 404 9.787532 TTTTCATTTTAGTCAGAACTGAAACAG 57.212 29.630 6.08 0.00 41.92 3.16
456 463 2.364970 CCATGCCTCAAACCTGTTCAAA 59.635 45.455 0.00 0.00 0.00 2.69
461 468 1.341383 GGATCCATGCCTCAAACCTGT 60.341 52.381 6.95 0.00 0.00 4.00
465 472 2.167075 CCAAAGGATCCATGCCTCAAAC 59.833 50.000 15.82 0.00 33.76 2.93
494 501 4.397417 CCTCTGAAATGGAACCTGATTGAC 59.603 45.833 0.00 0.00 0.00 3.18
506 513 6.603940 TGGTAAAAATTCCCTCTGAAATGG 57.396 37.500 0.00 0.00 36.33 3.16
552 559 5.067954 GGATATACCATGTTTACCACCCAC 58.932 45.833 0.00 0.00 38.79 4.61
578 585 3.817647 GGCTCAGTTTTGACAGATGAACT 59.182 43.478 0.00 0.00 32.89 3.01
594 601 6.275335 TGTTTTTCAATTCTTCAAGGCTCAG 58.725 36.000 0.00 0.00 0.00 3.35
602 609 6.200665 CCGCAAGATTGTTTTTCAATTCTTCA 59.799 34.615 0.00 0.00 45.49 3.02
609 616 3.131223 TGGTCCGCAAGATTGTTTTTCAA 59.869 39.130 0.00 0.00 40.53 2.69
626 633 1.203052 CCTGAACATGCAACATGGTCC 59.797 52.381 19.88 5.84 34.97 4.46
636 643 2.816087 TCAGAGCTTTTCCTGAACATGC 59.184 45.455 0.55 0.00 36.58 4.06
637 644 4.518211 ACTTCAGAGCTTTTCCTGAACATG 59.482 41.667 10.63 5.61 42.48 3.21
646 653 6.749923 ATGTCCATAACTTCAGAGCTTTTC 57.250 37.500 0.00 0.00 0.00 2.29
675 806 7.708752 CCTCTGAAAACTCATCAGGTATCTTAC 59.291 40.741 3.92 0.00 43.58 2.34
676 807 7.619698 TCCTCTGAAAACTCATCAGGTATCTTA 59.380 37.037 3.92 0.00 43.58 2.10
679 810 6.227298 TCCTCTGAAAACTCATCAGGTATC 57.773 41.667 3.92 0.00 43.58 2.24
691 822 4.021016 TCACTAGCCTCTTCCTCTGAAAAC 60.021 45.833 0.00 0.00 0.00 2.43
698 829 1.754226 CCAGTCACTAGCCTCTTCCTC 59.246 57.143 0.00 0.00 0.00 3.71
699 830 1.621072 CCCAGTCACTAGCCTCTTCCT 60.621 57.143 0.00 0.00 0.00 3.36
700 831 0.827368 CCCAGTCACTAGCCTCTTCC 59.173 60.000 0.00 0.00 0.00 3.46
701 832 1.754226 CTCCCAGTCACTAGCCTCTTC 59.246 57.143 0.00 0.00 0.00 2.87
702 833 1.621072 CCTCCCAGTCACTAGCCTCTT 60.621 57.143 0.00 0.00 0.00 2.85
703 834 0.032615 CCTCCCAGTCACTAGCCTCT 60.033 60.000 0.00 0.00 0.00 3.69
704 835 0.033011 TCCTCCCAGTCACTAGCCTC 60.033 60.000 0.00 0.00 0.00 4.70
705 836 0.639392 ATCCTCCCAGTCACTAGCCT 59.361 55.000 0.00 0.00 0.00 4.58
706 837 0.755686 CATCCTCCCAGTCACTAGCC 59.244 60.000 0.00 0.00 0.00 3.93
707 838 1.686052 CTCATCCTCCCAGTCACTAGC 59.314 57.143 0.00 0.00 0.00 3.42
708 839 1.686052 GCTCATCCTCCCAGTCACTAG 59.314 57.143 0.00 0.00 0.00 2.57
709 840 1.007118 TGCTCATCCTCCCAGTCACTA 59.993 52.381 0.00 0.00 0.00 2.74
710 841 0.252421 TGCTCATCCTCCCAGTCACT 60.252 55.000 0.00 0.00 0.00 3.41
711 842 0.835941 ATGCTCATCCTCCCAGTCAC 59.164 55.000 0.00 0.00 0.00 3.67
712 843 0.835276 CATGCTCATCCTCCCAGTCA 59.165 55.000 0.00 0.00 0.00 3.41
713 844 0.534652 GCATGCTCATCCTCCCAGTC 60.535 60.000 11.37 0.00 0.00 3.51
714 845 1.276859 TGCATGCTCATCCTCCCAGT 61.277 55.000 20.33 0.00 0.00 4.00
715 846 0.106868 TTGCATGCTCATCCTCCCAG 60.107 55.000 20.33 0.00 0.00 4.45
716 847 0.332293 TTTGCATGCTCATCCTCCCA 59.668 50.000 20.33 0.00 0.00 4.37
717 848 1.030457 CTTTGCATGCTCATCCTCCC 58.970 55.000 20.33 0.00 0.00 4.30
718 849 1.030457 CCTTTGCATGCTCATCCTCC 58.970 55.000 20.33 0.00 0.00 4.30
719 850 1.948145 CTCCTTTGCATGCTCATCCTC 59.052 52.381 20.33 0.00 0.00 3.71
727 858 0.736325 CTTGCTGCTCCTTTGCATGC 60.736 55.000 11.82 11.82 42.48 4.06
728 859 0.885879 TCTTGCTGCTCCTTTGCATG 59.114 50.000 0.00 0.00 42.48 4.06
734 865 3.118629 TCGATATGTTCTTGCTGCTCCTT 60.119 43.478 0.00 0.00 0.00 3.36
739 870 2.799412 CTCCTCGATATGTTCTTGCTGC 59.201 50.000 0.00 0.00 0.00 5.25
742 873 2.799412 CTGCTCCTCGATATGTTCTTGC 59.201 50.000 0.00 0.00 0.00 4.01
746 877 2.402305 CTGCTGCTCCTCGATATGTTC 58.598 52.381 0.00 0.00 0.00 3.18
748 879 0.033228 GCTGCTGCTCCTCGATATGT 59.967 55.000 8.53 0.00 36.03 2.29
751 882 0.179100 GTTGCTGCTGCTCCTCGATA 60.179 55.000 17.00 0.00 40.48 2.92
752 883 1.449246 GTTGCTGCTGCTCCTCGAT 60.449 57.895 17.00 0.00 40.48 3.59
754 885 1.744368 ATGTTGCTGCTGCTCCTCG 60.744 57.895 17.00 0.00 40.48 4.63
760 891 0.731417 CCTCTACATGTTGCTGCTGC 59.269 55.000 2.30 8.89 40.20 5.25
761 892 2.277969 CTCCTCTACATGTTGCTGCTG 58.722 52.381 2.30 0.00 0.00 4.41
762 893 1.209019 CCTCCTCTACATGTTGCTGCT 59.791 52.381 2.30 0.00 0.00 4.24
763 894 1.208052 TCCTCCTCTACATGTTGCTGC 59.792 52.381 2.30 0.00 0.00 5.25
764 895 2.741228 GCTCCTCCTCTACATGTTGCTG 60.741 54.545 2.30 0.00 0.00 4.41
765 896 1.484240 GCTCCTCCTCTACATGTTGCT 59.516 52.381 2.30 0.00 0.00 3.91
766 897 1.804372 CGCTCCTCCTCTACATGTTGC 60.804 57.143 2.30 0.00 0.00 4.17
767 898 1.751351 TCGCTCCTCCTCTACATGTTG 59.249 52.381 2.30 1.19 0.00 3.33
768 899 1.751924 GTCGCTCCTCCTCTACATGTT 59.248 52.381 2.30 0.00 0.00 2.71
769 900 1.394618 GTCGCTCCTCCTCTACATGT 58.605 55.000 2.69 2.69 0.00 3.21
770 901 0.309302 CGTCGCTCCTCCTCTACATG 59.691 60.000 0.00 0.00 0.00 3.21
771 902 0.180642 TCGTCGCTCCTCCTCTACAT 59.819 55.000 0.00 0.00 0.00 2.29
772 903 0.743701 GTCGTCGCTCCTCCTCTACA 60.744 60.000 0.00 0.00 0.00 2.74
773 904 0.743701 TGTCGTCGCTCCTCCTCTAC 60.744 60.000 0.00 0.00 0.00 2.59
774 905 0.035725 TTGTCGTCGCTCCTCCTCTA 60.036 55.000 0.00 0.00 0.00 2.43
775 906 1.303398 TTGTCGTCGCTCCTCCTCT 60.303 57.895 0.00 0.00 0.00 3.69
776 907 1.153997 GTTGTCGTCGCTCCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
777 908 1.461091 TTGTTGTCGTCGCTCCTCCT 61.461 55.000 0.00 0.00 0.00 3.69
778 909 0.599204 TTTGTTGTCGTCGCTCCTCC 60.599 55.000 0.00 0.00 0.00 4.30
779 910 0.784778 CTTTGTTGTCGTCGCTCCTC 59.215 55.000 0.00 0.00 0.00 3.71
780 911 0.387929 TCTTTGTTGTCGTCGCTCCT 59.612 50.000 0.00 0.00 0.00 3.69
784 915 2.097347 GTCTTCTCTTTGTTGTCGTCGC 60.097 50.000 0.00 0.00 0.00 5.19
786 917 3.454375 TGGTCTTCTCTTTGTTGTCGTC 58.546 45.455 0.00 0.00 0.00 4.20
788 919 2.221981 GCTGGTCTTCTCTTTGTTGTCG 59.778 50.000 0.00 0.00 0.00 4.35
789 920 3.206150 TGCTGGTCTTCTCTTTGTTGTC 58.794 45.455 0.00 0.00 0.00 3.18
792 923 2.225467 GCTGCTGGTCTTCTCTTTGTT 58.775 47.619 0.00 0.00 0.00 2.83
793 924 1.544314 GGCTGCTGGTCTTCTCTTTGT 60.544 52.381 0.00 0.00 0.00 2.83
796 927 0.767375 TTGGCTGCTGGTCTTCTCTT 59.233 50.000 0.00 0.00 0.00 2.85
797 928 0.767375 TTTGGCTGCTGGTCTTCTCT 59.233 50.000 0.00 0.00 0.00 3.10
802 933 1.228644 TGCATTTGGCTGCTGGTCT 60.229 52.632 0.00 0.00 45.15 3.85
813 944 0.179171 CTGCCGCTCTTCTGCATTTG 60.179 55.000 0.00 0.00 34.41 2.32
815 946 0.321919 TTCTGCCGCTCTTCTGCATT 60.322 50.000 0.00 0.00 34.41 3.56
819 950 3.058016 TGAATTTTTCTGCCGCTCTTCTG 60.058 43.478 0.00 0.00 0.00 3.02
821 952 3.189287 TCTGAATTTTTCTGCCGCTCTTC 59.811 43.478 0.00 0.00 0.00 2.87
822 953 3.149196 TCTGAATTTTTCTGCCGCTCTT 58.851 40.909 0.00 0.00 0.00 2.85
823 954 2.746362 CTCTGAATTTTTCTGCCGCTCT 59.254 45.455 0.00 0.00 0.00 4.09
824 955 2.744202 TCTCTGAATTTTTCTGCCGCTC 59.256 45.455 0.00 0.00 0.00 5.03
825 956 2.783135 TCTCTGAATTTTTCTGCCGCT 58.217 42.857 0.00 0.00 0.00 5.52
826 957 3.559238 TTCTCTGAATTTTTCTGCCGC 57.441 42.857 0.00 0.00 0.00 6.53
827 958 4.858935 TGTTTCTCTGAATTTTTCTGCCG 58.141 39.130 0.00 0.00 0.00 5.69
828 959 5.689068 CACTGTTTCTCTGAATTTTTCTGCC 59.311 40.000 0.00 0.00 0.00 4.85
829 960 5.689068 CCACTGTTTCTCTGAATTTTTCTGC 59.311 40.000 0.00 0.00 0.00 4.26
830 961 5.689068 GCCACTGTTTCTCTGAATTTTTCTG 59.311 40.000 0.00 0.00 0.00 3.02
831 962 5.360714 TGCCACTGTTTCTCTGAATTTTTCT 59.639 36.000 0.00 0.00 0.00 2.52
832 963 5.591099 TGCCACTGTTTCTCTGAATTTTTC 58.409 37.500 0.00 0.00 0.00 2.29
833 964 5.594926 CTGCCACTGTTTCTCTGAATTTTT 58.405 37.500 0.00 0.00 0.00 1.94
834 965 4.500375 GCTGCCACTGTTTCTCTGAATTTT 60.500 41.667 0.00 0.00 0.00 1.82
835 966 3.005155 GCTGCCACTGTTTCTCTGAATTT 59.995 43.478 0.00 0.00 0.00 1.82
836 967 2.555757 GCTGCCACTGTTTCTCTGAATT 59.444 45.455 0.00 0.00 0.00 2.17
837 968 2.157738 GCTGCCACTGTTTCTCTGAAT 58.842 47.619 0.00 0.00 0.00 2.57
838 969 1.134128 TGCTGCCACTGTTTCTCTGAA 60.134 47.619 0.00 0.00 0.00 3.02
839 970 0.469494 TGCTGCCACTGTTTCTCTGA 59.531 50.000 0.00 0.00 0.00 3.27
840 971 1.531423 ATGCTGCCACTGTTTCTCTG 58.469 50.000 0.00 0.00 0.00 3.35
841 972 3.423539 TTATGCTGCCACTGTTTCTCT 57.576 42.857 0.00 0.00 0.00 3.10
842 973 3.733077 GCATTATGCTGCCACTGTTTCTC 60.733 47.826 10.27 0.00 40.96 2.87
843 974 2.165030 GCATTATGCTGCCACTGTTTCT 59.835 45.455 10.27 0.00 40.96 2.52
844 975 2.094597 TGCATTATGCTGCCACTGTTTC 60.095 45.455 18.44 0.00 45.31 2.78
845 976 1.894466 TGCATTATGCTGCCACTGTTT 59.106 42.857 18.44 0.00 45.31 2.83
846 977 1.548081 TGCATTATGCTGCCACTGTT 58.452 45.000 18.44 0.00 45.31 3.16
847 978 1.548081 TTGCATTATGCTGCCACTGT 58.452 45.000 18.44 0.00 45.31 3.55
848 979 2.658373 TTTGCATTATGCTGCCACTG 57.342 45.000 18.44 0.00 45.31 3.66
849 980 2.740580 GCATTTGCATTATGCTGCCACT 60.741 45.455 18.44 0.00 45.31 4.00
850 981 1.595794 GCATTTGCATTATGCTGCCAC 59.404 47.619 18.44 1.89 45.31 5.01
851 982 1.942677 GCATTTGCATTATGCTGCCA 58.057 45.000 18.44 0.00 45.31 4.92
856 987 3.639538 CTCCTGAGCATTTGCATTATGC 58.360 45.455 20.73 20.73 46.78 3.14
870 1001 2.877168 GGATTATTGTGCTGCTCCTGAG 59.123 50.000 0.00 0.00 0.00 3.35
871 1002 2.239402 TGGATTATTGTGCTGCTCCTGA 59.761 45.455 0.00 0.00 0.00 3.86
874 1005 4.142093 ACATTTGGATTATTGTGCTGCTCC 60.142 41.667 0.00 0.00 0.00 4.70
901 1032 7.533289 AGCTTCTGGTTCTAGTATATTCTCC 57.467 40.000 0.00 0.00 0.00 3.71
904 1035 6.986817 TGCAAGCTTCTGGTTCTAGTATATTC 59.013 38.462 0.00 0.00 0.00 1.75
905 1036 6.889198 TGCAAGCTTCTGGTTCTAGTATATT 58.111 36.000 0.00 0.00 0.00 1.28
911 1042 3.427233 GCATTGCAAGCTTCTGGTTCTAG 60.427 47.826 4.94 0.00 0.00 2.43
932 1064 6.536941 GCTAGGCTGGTAATAGATATTTGAGC 59.463 42.308 0.00 0.00 0.00 4.26
936 1068 7.745717 TGTTGCTAGGCTGGTAATAGATATTT 58.254 34.615 4.51 0.00 0.00 1.40
942 1074 4.672587 TCTGTTGCTAGGCTGGTAATAG 57.327 45.455 16.46 16.46 0.00 1.73
959 1091 4.523943 TCACTGGCAATTTAGCATTTCTGT 59.476 37.500 0.00 0.00 35.83 3.41
960 1092 5.063180 TCACTGGCAATTTAGCATTTCTG 57.937 39.130 0.00 0.00 35.83 3.02
963 1095 5.477984 TCTCTTCACTGGCAATTTAGCATTT 59.522 36.000 0.00 0.00 35.83 2.32
965 1097 4.592942 TCTCTTCACTGGCAATTTAGCAT 58.407 39.130 0.00 0.00 35.83 3.79
1033 1165 5.208463 TCACTTGCAGTGTGTACTTCATA 57.792 39.130 17.50 0.00 46.03 2.15
1049 1184 4.212143 TCTGATTCAGACCCATCACTTG 57.788 45.455 12.38 0.00 35.39 3.16
1059 1194 5.070770 AGTCACTGTCATCTGATTCAGAC 57.929 43.478 18.35 7.91 43.63 3.51
1062 1197 5.128335 AGCATAGTCACTGTCATCTGATTCA 59.872 40.000 0.00 0.00 0.00 2.57
1063 1198 5.599732 AGCATAGTCACTGTCATCTGATTC 58.400 41.667 0.00 0.00 0.00 2.52
1064 1199 5.611128 AGCATAGTCACTGTCATCTGATT 57.389 39.130 0.00 0.00 0.00 2.57
1065 1200 6.914654 ATAGCATAGTCACTGTCATCTGAT 57.085 37.500 0.00 0.00 0.00 2.90
1066 1201 6.239148 GGAATAGCATAGTCACTGTCATCTGA 60.239 42.308 0.00 0.00 37.41 3.27
1067 1202 5.925397 GGAATAGCATAGTCACTGTCATCTG 59.075 44.000 0.00 0.00 37.41 2.90
1068 1203 5.011533 GGGAATAGCATAGTCACTGTCATCT 59.988 44.000 0.00 0.00 35.91 2.90
1069 1204 5.233988 GGGAATAGCATAGTCACTGTCATC 58.766 45.833 0.00 0.00 35.91 2.92
1070 1205 4.040952 GGGGAATAGCATAGTCACTGTCAT 59.959 45.833 0.00 0.00 39.42 3.06
1234 1373 7.577303 TCATCTAGCTTAAATGTTTCTGGGAT 58.423 34.615 0.00 0.00 0.00 3.85
1275 1414 7.336679 TCATCATCACTTTCGAAATATGGTGTT 59.663 33.333 25.10 18.65 29.63 3.32
1287 1426 5.791367 ATGACAAGTCATCATCACTTTCG 57.209 39.130 9.79 0.00 46.57 3.46
1321 1466 5.248248 TCACTTCATTTACCTCTCCATCACA 59.752 40.000 0.00 0.00 0.00 3.58
1350 1495 5.722021 AAACTCTGTGTGTTGTTTTCCTT 57.278 34.783 0.00 0.00 29.64 3.36
1373 1518 5.029807 TGGTTTGTCAGTACTGTCATCAA 57.970 39.130 20.92 17.72 0.00 2.57
1407 1552 2.606308 GCTATCTTGAAATGCCATGCCG 60.606 50.000 0.00 0.00 0.00 5.69
1422 1567 3.054802 CCTGTTTGAACTCCCTGCTATCT 60.055 47.826 0.00 0.00 0.00 1.98
1543 1688 6.018433 AGTAATGGAACCATAAATGCTCCT 57.982 37.500 6.77 0.00 35.31 3.69
1644 1789 2.580962 TGGCAATGACTGTGCTTGTAA 58.419 42.857 0.00 0.00 41.88 2.41
1645 1790 2.268762 TGGCAATGACTGTGCTTGTA 57.731 45.000 0.00 0.00 41.88 2.41
1750 2214 0.251165 TGCACTGGGAAAGGCTAACC 60.251 55.000 0.00 0.00 0.00 2.85
1837 2301 4.190001 TCACTAGCTCTAAGTGGTAGTCG 58.810 47.826 13.81 7.16 43.94 4.18
1897 2388 9.049523 GCATGAAGACAAATATACATTCTCTGA 57.950 33.333 0.00 0.00 0.00 3.27
1919 2410 2.145536 GAAACCCTTTTTGCAGGCATG 58.854 47.619 0.00 0.00 31.69 4.06
1999 2490 6.086222 GCCAATAGCATACAATATTTCACCG 58.914 40.000 0.00 0.00 42.97 4.94
2031 2522 1.303309 GTAGCCCATGCACACATCTC 58.697 55.000 0.00 0.00 41.13 2.75
2032 2523 0.620030 TGTAGCCCATGCACACATCT 59.380 50.000 0.00 0.00 41.13 2.90
2033 2524 1.019673 CTGTAGCCCATGCACACATC 58.980 55.000 0.00 0.00 41.13 3.06
2035 2526 0.110295 AACTGTAGCCCATGCACACA 59.890 50.000 0.00 0.00 41.13 3.72
2036 2527 0.523072 CAACTGTAGCCCATGCACAC 59.477 55.000 0.00 0.00 41.13 3.82
2037 2528 0.399833 TCAACTGTAGCCCATGCACA 59.600 50.000 0.00 0.00 41.13 4.57
2038 2529 1.089920 CTCAACTGTAGCCCATGCAC 58.910 55.000 0.00 0.00 41.13 4.57
2039 2530 0.035152 CCTCAACTGTAGCCCATGCA 60.035 55.000 0.00 0.00 41.13 3.96
2066 2571 4.122776 GCAACCAGTACCATGAGTCATAG 58.877 47.826 5.03 0.35 0.00 2.23
2120 3121 5.855395 GCAGTTTTCAAGATGTCTTTAGCTG 59.145 40.000 0.00 1.88 33.11 4.24
2134 3135 3.540314 ATGCTTTGGTGCAGTTTTCAA 57.460 38.095 0.00 0.00 46.71 2.69
2149 3150 1.574526 TAGGCCCTGCTCCAATGCTT 61.575 55.000 0.00 0.00 0.00 3.91
2172 3173 3.067833 GTCACACCAAGAACCTAGCTTC 58.932 50.000 0.00 0.00 0.00 3.86
2196 3197 6.157645 AGGATTCACACAGATTATTCTCCACT 59.842 38.462 0.00 0.00 0.00 4.00
2220 3221 9.622004 CTTGCCTTCATTATAGCATTATTGAAG 57.378 33.333 16.13 16.13 38.30 3.02
2288 3289 3.459828 TCTTGGATCCTTACCATCACCA 58.540 45.455 14.23 0.00 37.26 4.17
2307 3308 6.665248 AGGGCAAATGTTTAGCTCTATTTTCT 59.335 34.615 0.00 0.00 37.32 2.52
2346 3371 5.809001 TGACCTCTTGATGTTCAGCTTAAT 58.191 37.500 0.00 0.00 0.00 1.40
2348 3373 4.323028 CCTGACCTCTTGATGTTCAGCTTA 60.323 45.833 0.00 0.00 0.00 3.09
2375 3400 1.200020 CCATTCCAAAGAACCTGACGC 59.800 52.381 0.00 0.00 33.97 5.19
2376 3401 1.812571 CCCATTCCAAAGAACCTGACG 59.187 52.381 0.00 0.00 33.97 4.35
2444 3469 2.827921 ACATTTCCATGCCTCCAAGTTC 59.172 45.455 0.00 0.00 33.05 3.01
2472 3497 3.933861 ACCAGACAGTTCCCAATATCC 57.066 47.619 0.00 0.00 0.00 2.59
2584 3710 8.792830 TCTCTTCTTTTTGTCTTCTTTCTTCA 57.207 30.769 0.00 0.00 0.00 3.02
2592 3718 6.017523 CACCCTCTTCTCTTCTTTTTGTCTTC 60.018 42.308 0.00 0.00 0.00 2.87
2598 3724 5.896073 TCTCACCCTCTTCTCTTCTTTTT 57.104 39.130 0.00 0.00 0.00 1.94
2661 3790 2.821969 GCTCCCACAAACAGAACATGAT 59.178 45.455 0.00 0.00 0.00 2.45
2691 3820 8.205512 GGGTTTCCCAAACACTTTCTTTTATTA 58.794 33.333 0.00 0.00 44.65 0.98
2694 3823 5.979993 GGGTTTCCCAAACACTTTCTTTTA 58.020 37.500 0.00 0.00 44.65 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.