Multiple sequence alignment - TraesCS1B01G474300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G474300 chr1B 100.000 2359 0 0 854 3212 683220809 683218451 0.000000e+00 4357
1 TraesCS1B01G474300 chr1B 100.000 548 0 0 1 548 683221662 683221115 0.000000e+00 1013
2 TraesCS1B01G474300 chr2D 77.768 2366 491 31 854 3207 305856515 305858857 0.000000e+00 1423
3 TraesCS1B01G474300 chr2A 86.998 1046 131 5 2169 3212 704974 706016 0.000000e+00 1173
4 TraesCS1B01G474300 chr2A 86.998 1046 131 5 2169 3212 710545 711587 0.000000e+00 1173
5 TraesCS1B01G474300 chr7B 94.583 683 21 2 2538 3212 156703743 156703069 0.000000e+00 1042
6 TraesCS1B01G474300 chr7B 78.817 1048 196 23 2129 3165 181029124 181028092 0.000000e+00 682
7 TraesCS1B01G474300 chr4A 80.244 739 135 10 2162 2895 552513063 552513795 2.180000e-151 545
8 TraesCS1B01G474300 chr6B 77.850 772 158 12 2129 2894 210601703 210602467 1.750000e-127 466
9 TraesCS1B01G474300 chr7A 77.885 728 148 13 2171 2892 680625144 680624424 1.060000e-119 440
10 TraesCS1B01G474300 chr6A 75.391 894 210 9 2123 3011 3678826 3679714 1.070000e-114 424
11 TraesCS1B01G474300 chr1A 76.478 778 175 7 992 1765 11073143 11072370 1.780000e-112 416
12 TraesCS1B01G474300 chr1A 74.619 721 179 4 984 1702 280478889 280479607 6.690000e-82 315
13 TraesCS1B01G474300 chr1A 72.651 958 243 18 2114 3062 280480017 280480964 1.870000e-77 300
14 TraesCS1B01G474300 chr1A 83.843 229 35 2 952 1179 560259557 560259330 1.940000e-52 217
15 TraesCS1B01G474300 chr1A 78.027 223 41 8 318 538 11073555 11073339 2.010000e-27 134
16 TraesCS1B01G474300 chr1D 89.809 314 15 7 1 298 490490755 490490443 1.400000e-103 387
17 TraesCS1B01G474300 chr5D 78.166 229 41 6 314 538 349366070 349365847 1.550000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G474300 chr1B 683218451 683221662 3211 True 2685.0 4357 100.0000 1 3212 2 chr1B.!!$R1 3211
1 TraesCS1B01G474300 chr2D 305856515 305858857 2342 False 1423.0 1423 77.7680 854 3207 1 chr2D.!!$F1 2353
2 TraesCS1B01G474300 chr2A 704974 706016 1042 False 1173.0 1173 86.9980 2169 3212 1 chr2A.!!$F1 1043
3 TraesCS1B01G474300 chr2A 710545 711587 1042 False 1173.0 1173 86.9980 2169 3212 1 chr2A.!!$F2 1043
4 TraesCS1B01G474300 chr7B 156703069 156703743 674 True 1042.0 1042 94.5830 2538 3212 1 chr7B.!!$R1 674
5 TraesCS1B01G474300 chr7B 181028092 181029124 1032 True 682.0 682 78.8170 2129 3165 1 chr7B.!!$R2 1036
6 TraesCS1B01G474300 chr4A 552513063 552513795 732 False 545.0 545 80.2440 2162 2895 1 chr4A.!!$F1 733
7 TraesCS1B01G474300 chr6B 210601703 210602467 764 False 466.0 466 77.8500 2129 2894 1 chr6B.!!$F1 765
8 TraesCS1B01G474300 chr7A 680624424 680625144 720 True 440.0 440 77.8850 2171 2892 1 chr7A.!!$R1 721
9 TraesCS1B01G474300 chr6A 3678826 3679714 888 False 424.0 424 75.3910 2123 3011 1 chr6A.!!$F1 888
10 TraesCS1B01G474300 chr1A 280478889 280480964 2075 False 307.5 315 73.6350 984 3062 2 chr1A.!!$F1 2078
11 TraesCS1B01G474300 chr1A 11072370 11073555 1185 True 275.0 416 77.2525 318 1765 2 chr1A.!!$R2 1447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.033601 AGACCGAGCTGAGATGGACT 60.034 55.0 0.0 0.0 0.00 3.85 F
139 140 0.038892 GTCAGGTCGCTTAACGTGGA 60.039 55.0 0.0 0.0 44.19 4.02 F
291 292 0.046397 AGAGGAGCCCCCAATAGGTT 59.954 55.0 0.0 0.0 37.41 3.50 F
1833 1834 0.036010 ATGTCAACTCTTCTGCCCCG 60.036 55.0 0.0 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1629 0.252696 AGGAGTAGGGCACATCACCA 60.253 55.0 0.0 0.0 0.0 4.17 R
1647 1648 0.321564 CGTTCTCATCCCACAAGCCA 60.322 55.0 0.0 0.0 0.0 4.75 R
2105 2113 0.389166 GTCGGTGTCTTGAGCCTCAG 60.389 60.0 0.0 0.0 0.0 3.35 R
3161 3186 1.965754 GAGCAGGAGTTGGAGGCGAT 61.966 60.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.933861 ACAGGAATTAGATGTCACCCC 57.066 47.619 0.00 0.00 0.00 4.95
22 23 2.509964 ACAGGAATTAGATGTCACCCCC 59.490 50.000 0.00 0.00 0.00 5.40
23 24 2.509548 CAGGAATTAGATGTCACCCCCA 59.490 50.000 0.00 0.00 0.00 4.96
24 25 3.053693 CAGGAATTAGATGTCACCCCCAA 60.054 47.826 0.00 0.00 0.00 4.12
25 26 3.053619 AGGAATTAGATGTCACCCCCAAC 60.054 47.826 0.00 0.00 0.00 3.77
26 27 3.308832 GGAATTAGATGTCACCCCCAACA 60.309 47.826 0.00 0.00 0.00 3.33
27 28 3.652057 ATTAGATGTCACCCCCAACAG 57.348 47.619 0.00 0.00 0.00 3.16
28 29 0.618458 TAGATGTCACCCCCAACAGC 59.382 55.000 0.00 0.00 32.09 4.40
29 30 1.074775 GATGTCACCCCCAACAGCA 59.925 57.895 0.00 0.00 32.24 4.41
30 31 0.539438 GATGTCACCCCCAACAGCAA 60.539 55.000 0.00 0.00 32.24 3.91
31 32 0.105760 ATGTCACCCCCAACAGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
32 33 1.040339 TGTCACCCCCAACAGCAAAC 61.040 55.000 0.00 0.00 0.00 2.93
33 34 1.456705 TCACCCCCAACAGCAAACC 60.457 57.895 0.00 0.00 0.00 3.27
34 35 2.123033 ACCCCCAACAGCAAACCC 60.123 61.111 0.00 0.00 0.00 4.11
35 36 2.123077 CCCCCAACAGCAAACCCA 60.123 61.111 0.00 0.00 0.00 4.51
36 37 1.764054 CCCCCAACAGCAAACCCAA 60.764 57.895 0.00 0.00 0.00 4.12
37 38 1.341156 CCCCCAACAGCAAACCCAAA 61.341 55.000 0.00 0.00 0.00 3.28
38 39 0.764271 CCCCAACAGCAAACCCAAAT 59.236 50.000 0.00 0.00 0.00 2.32
39 40 1.974236 CCCCAACAGCAAACCCAAATA 59.026 47.619 0.00 0.00 0.00 1.40
40 41 2.571202 CCCCAACAGCAAACCCAAATAT 59.429 45.455 0.00 0.00 0.00 1.28
41 42 3.008923 CCCCAACAGCAAACCCAAATATT 59.991 43.478 0.00 0.00 0.00 1.28
42 43 4.252878 CCCAACAGCAAACCCAAATATTC 58.747 43.478 0.00 0.00 0.00 1.75
43 44 4.262808 CCCAACAGCAAACCCAAATATTCA 60.263 41.667 0.00 0.00 0.00 2.57
44 45 5.490159 CCAACAGCAAACCCAAATATTCAT 58.510 37.500 0.00 0.00 0.00 2.57
45 46 5.581874 CCAACAGCAAACCCAAATATTCATC 59.418 40.000 0.00 0.00 0.00 2.92
46 47 5.343307 ACAGCAAACCCAAATATTCATCC 57.657 39.130 0.00 0.00 0.00 3.51
47 48 4.142182 ACAGCAAACCCAAATATTCATCCG 60.142 41.667 0.00 0.00 0.00 4.18
48 49 4.097741 CAGCAAACCCAAATATTCATCCGA 59.902 41.667 0.00 0.00 0.00 4.55
49 50 4.709397 AGCAAACCCAAATATTCATCCGAA 59.291 37.500 0.00 0.00 35.05 4.30
50 51 5.043248 GCAAACCCAAATATTCATCCGAAG 58.957 41.667 0.00 0.00 33.74 3.79
51 52 4.918810 AACCCAAATATTCATCCGAAGC 57.081 40.909 0.00 0.00 33.74 3.86
52 53 3.897239 ACCCAAATATTCATCCGAAGCA 58.103 40.909 0.00 0.00 33.74 3.91
53 54 3.885297 ACCCAAATATTCATCCGAAGCAG 59.115 43.478 0.00 0.00 33.74 4.24
54 55 4.136796 CCCAAATATTCATCCGAAGCAGA 58.863 43.478 0.00 0.00 33.74 4.26
55 56 4.214971 CCCAAATATTCATCCGAAGCAGAG 59.785 45.833 0.00 0.00 33.74 3.35
56 57 4.320057 CCAAATATTCATCCGAAGCAGAGC 60.320 45.833 0.00 0.00 33.74 4.09
57 58 3.758755 ATATTCATCCGAAGCAGAGCA 57.241 42.857 0.00 0.00 33.74 4.26
58 59 2.634815 ATTCATCCGAAGCAGAGCAT 57.365 45.000 0.00 0.00 33.74 3.79
59 60 2.408271 TTCATCCGAAGCAGAGCATT 57.592 45.000 0.00 0.00 0.00 3.56
60 61 2.408271 TCATCCGAAGCAGAGCATTT 57.592 45.000 0.00 0.00 0.00 2.32
61 62 2.715046 TCATCCGAAGCAGAGCATTTT 58.285 42.857 0.00 0.00 0.00 1.82
62 63 3.084039 TCATCCGAAGCAGAGCATTTTT 58.916 40.909 0.00 0.00 0.00 1.94
63 64 4.260985 TCATCCGAAGCAGAGCATTTTTA 58.739 39.130 0.00 0.00 0.00 1.52
64 65 4.094887 TCATCCGAAGCAGAGCATTTTTAC 59.905 41.667 0.00 0.00 0.00 2.01
65 66 3.407698 TCCGAAGCAGAGCATTTTTACA 58.592 40.909 0.00 0.00 0.00 2.41
66 67 4.009675 TCCGAAGCAGAGCATTTTTACAT 58.990 39.130 0.00 0.00 0.00 2.29
67 68 5.182487 TCCGAAGCAGAGCATTTTTACATA 58.818 37.500 0.00 0.00 0.00 2.29
68 69 5.822519 TCCGAAGCAGAGCATTTTTACATAT 59.177 36.000 0.00 0.00 0.00 1.78
69 70 5.911280 CCGAAGCAGAGCATTTTTACATATG 59.089 40.000 0.00 0.00 0.00 1.78
70 71 6.238456 CCGAAGCAGAGCATTTTTACATATGA 60.238 38.462 10.38 0.00 0.00 2.15
71 72 7.188834 CGAAGCAGAGCATTTTTACATATGAA 58.811 34.615 10.38 0.00 0.00 2.57
72 73 7.375280 CGAAGCAGAGCATTTTTACATATGAAG 59.625 37.037 10.38 0.00 0.00 3.02
73 74 7.870509 AGCAGAGCATTTTTACATATGAAGA 57.129 32.000 10.38 0.00 0.00 2.87
74 75 8.461249 AGCAGAGCATTTTTACATATGAAGAT 57.539 30.769 10.38 0.00 0.00 2.40
75 76 8.910944 AGCAGAGCATTTTTACATATGAAGATT 58.089 29.630 10.38 0.00 0.00 2.40
85 86 9.878667 TTTTACATATGAAGATTACAAGACCGA 57.121 29.630 10.38 0.00 0.00 4.69
86 87 9.529325 TTTACATATGAAGATTACAAGACCGAG 57.471 33.333 10.38 0.00 0.00 4.63
87 88 5.986135 ACATATGAAGATTACAAGACCGAGC 59.014 40.000 10.38 0.00 0.00 5.03
88 89 4.744795 ATGAAGATTACAAGACCGAGCT 57.255 40.909 0.00 0.00 0.00 4.09
89 90 3.849911 TGAAGATTACAAGACCGAGCTG 58.150 45.455 0.00 0.00 0.00 4.24
90 91 3.509967 TGAAGATTACAAGACCGAGCTGA 59.490 43.478 0.00 0.00 0.00 4.26
91 92 3.791973 AGATTACAAGACCGAGCTGAG 57.208 47.619 0.00 0.00 0.00 3.35
92 93 3.357203 AGATTACAAGACCGAGCTGAGA 58.643 45.455 0.00 0.00 0.00 3.27
93 94 3.957497 AGATTACAAGACCGAGCTGAGAT 59.043 43.478 0.00 0.00 0.00 2.75
94 95 3.510388 TTACAAGACCGAGCTGAGATG 57.490 47.619 0.00 0.00 0.00 2.90
95 96 0.534412 ACAAGACCGAGCTGAGATGG 59.466 55.000 0.00 0.00 0.00 3.51
96 97 0.820226 CAAGACCGAGCTGAGATGGA 59.180 55.000 0.00 0.00 0.00 3.41
97 98 0.820871 AAGACCGAGCTGAGATGGAC 59.179 55.000 0.00 0.00 0.00 4.02
98 99 0.033601 AGACCGAGCTGAGATGGACT 60.034 55.000 0.00 0.00 0.00 3.85
99 100 0.383949 GACCGAGCTGAGATGGACTC 59.616 60.000 0.00 0.00 45.11 3.36
109 110 2.815478 GAGATGGACTCGTGGATTCAC 58.185 52.381 0.00 0.00 40.36 3.18
110 111 2.166459 GAGATGGACTCGTGGATTCACA 59.834 50.000 4.68 0.00 43.79 3.58
111 112 2.768527 AGATGGACTCGTGGATTCACAT 59.231 45.455 4.68 0.00 43.79 3.21
112 113 2.385013 TGGACTCGTGGATTCACATG 57.615 50.000 4.68 0.00 43.79 3.21
113 114 1.009829 GGACTCGTGGATTCACATGC 58.990 55.000 4.68 0.00 43.79 4.06
114 115 1.675714 GGACTCGTGGATTCACATGCA 60.676 52.381 4.68 0.00 43.79 3.96
115 116 2.076100 GACTCGTGGATTCACATGCAA 58.924 47.619 4.68 0.00 43.79 4.08
116 117 2.079158 ACTCGTGGATTCACATGCAAG 58.921 47.619 4.68 0.00 43.79 4.01
117 118 2.289631 ACTCGTGGATTCACATGCAAGA 60.290 45.455 4.68 0.00 43.79 3.02
118 119 2.941064 CTCGTGGATTCACATGCAAGAT 59.059 45.455 4.68 0.00 43.79 2.40
119 120 2.679336 TCGTGGATTCACATGCAAGATG 59.321 45.455 4.68 0.00 43.79 2.90
120 121 2.223409 CGTGGATTCACATGCAAGATGG 60.223 50.000 4.68 0.00 43.79 3.51
121 122 2.756760 GTGGATTCACATGCAAGATGGT 59.243 45.455 0.00 0.00 43.13 3.55
122 123 3.018856 TGGATTCACATGCAAGATGGTC 58.981 45.455 0.00 0.00 0.00 4.02
123 124 3.018856 GGATTCACATGCAAGATGGTCA 58.981 45.455 0.00 0.00 0.00 4.02
124 125 3.066342 GGATTCACATGCAAGATGGTCAG 59.934 47.826 0.00 0.00 0.00 3.51
125 126 2.118313 TCACATGCAAGATGGTCAGG 57.882 50.000 0.00 0.00 0.00 3.86
126 127 1.352017 TCACATGCAAGATGGTCAGGT 59.648 47.619 0.00 0.00 0.00 4.00
127 128 1.741706 CACATGCAAGATGGTCAGGTC 59.258 52.381 0.00 0.00 0.00 3.85
128 129 1.012086 CATGCAAGATGGTCAGGTCG 58.988 55.000 0.00 0.00 0.00 4.79
129 130 0.745845 ATGCAAGATGGTCAGGTCGC 60.746 55.000 0.00 0.00 0.00 5.19
130 131 1.078848 GCAAGATGGTCAGGTCGCT 60.079 57.895 0.00 0.00 0.00 4.93
131 132 0.674895 GCAAGATGGTCAGGTCGCTT 60.675 55.000 0.00 0.00 0.00 4.68
132 133 1.405526 GCAAGATGGTCAGGTCGCTTA 60.406 52.381 0.00 0.00 0.00 3.09
133 134 2.935238 GCAAGATGGTCAGGTCGCTTAA 60.935 50.000 0.00 0.00 0.00 1.85
134 135 2.673368 CAAGATGGTCAGGTCGCTTAAC 59.327 50.000 0.00 0.00 0.00 2.01
135 136 1.135083 AGATGGTCAGGTCGCTTAACG 60.135 52.381 0.00 0.00 45.62 3.18
136 137 0.606604 ATGGTCAGGTCGCTTAACGT 59.393 50.000 0.00 0.00 44.19 3.99
137 138 0.319211 TGGTCAGGTCGCTTAACGTG 60.319 55.000 0.00 0.00 44.19 4.49
138 139 1.012486 GGTCAGGTCGCTTAACGTGG 61.012 60.000 0.00 0.00 44.19 4.94
139 140 0.038892 GTCAGGTCGCTTAACGTGGA 60.039 55.000 0.00 0.00 44.19 4.02
140 141 0.038892 TCAGGTCGCTTAACGTGGAC 60.039 55.000 0.00 0.00 44.19 4.02
141 142 0.319211 CAGGTCGCTTAACGTGGACA 60.319 55.000 0.00 0.00 44.19 4.02
142 143 0.390124 AGGTCGCTTAACGTGGACAA 59.610 50.000 0.00 0.00 44.19 3.18
143 144 0.788391 GGTCGCTTAACGTGGACAAG 59.212 55.000 0.00 0.00 44.19 3.16
144 145 1.494824 GTCGCTTAACGTGGACAAGT 58.505 50.000 0.00 0.00 44.19 3.16
145 146 1.862827 GTCGCTTAACGTGGACAAGTT 59.137 47.619 8.55 8.55 44.19 2.66
146 147 3.052036 GTCGCTTAACGTGGACAAGTTA 58.948 45.455 6.72 6.72 44.19 2.24
147 148 3.052036 TCGCTTAACGTGGACAAGTTAC 58.948 45.455 9.74 1.05 44.19 2.50
148 149 2.796031 CGCTTAACGTGGACAAGTTACA 59.204 45.455 9.74 3.00 35.58 2.41
149 150 3.245754 CGCTTAACGTGGACAAGTTACAA 59.754 43.478 9.74 0.00 35.58 2.41
150 151 4.260294 CGCTTAACGTGGACAAGTTACAAA 60.260 41.667 9.74 0.00 35.58 2.83
151 152 5.559417 CGCTTAACGTGGACAAGTTACAAAT 60.559 40.000 9.74 0.00 35.58 2.32
152 153 6.203647 GCTTAACGTGGACAAGTTACAAATT 58.796 36.000 9.74 0.00 35.58 1.82
153 154 6.141685 GCTTAACGTGGACAAGTTACAAATTG 59.858 38.462 9.74 0.91 39.65 2.32
154 155 4.561735 ACGTGGACAAGTTACAAATTGG 57.438 40.909 7.03 0.00 38.22 3.16
155 156 4.200874 ACGTGGACAAGTTACAAATTGGA 58.799 39.130 7.03 0.00 38.22 3.53
156 157 4.035909 ACGTGGACAAGTTACAAATTGGAC 59.964 41.667 7.03 0.00 38.22 4.02
157 158 4.274950 CGTGGACAAGTTACAAATTGGACT 59.725 41.667 7.03 0.00 38.22 3.85
158 159 5.519722 GTGGACAAGTTACAAATTGGACTG 58.480 41.667 7.03 0.28 38.22 3.51
159 160 4.582656 TGGACAAGTTACAAATTGGACTGG 59.417 41.667 7.03 1.58 38.22 4.00
160 161 4.825085 GGACAAGTTACAAATTGGACTGGA 59.175 41.667 11.43 0.00 38.22 3.86
161 162 5.048713 GGACAAGTTACAAATTGGACTGGAG 60.049 44.000 11.43 5.78 38.22 3.86
162 163 5.445964 ACAAGTTACAAATTGGACTGGAGT 58.554 37.500 11.43 6.23 38.22 3.85
163 164 5.891551 ACAAGTTACAAATTGGACTGGAGTT 59.108 36.000 11.43 0.00 38.22 3.01
164 165 6.183360 ACAAGTTACAAATTGGACTGGAGTTG 60.183 38.462 11.43 4.11 38.22 3.16
165 166 4.278419 AGTTACAAATTGGACTGGAGTTGC 59.722 41.667 0.00 0.00 0.00 4.17
166 167 1.608590 ACAAATTGGACTGGAGTTGCG 59.391 47.619 0.00 0.00 0.00 4.85
167 168 1.879380 CAAATTGGACTGGAGTTGCGA 59.121 47.619 0.00 0.00 0.00 5.10
168 169 1.523758 AATTGGACTGGAGTTGCGAC 58.476 50.000 0.00 0.00 0.00 5.19
169 170 0.396435 ATTGGACTGGAGTTGCGACA 59.604 50.000 6.90 0.00 0.00 4.35
170 171 0.531974 TTGGACTGGAGTTGCGACAC 60.532 55.000 6.90 0.00 0.00 3.67
171 172 1.668151 GGACTGGAGTTGCGACACC 60.668 63.158 13.31 13.31 37.08 4.16
172 173 2.022129 GACTGGAGTTGCGACACCG 61.022 63.158 14.97 11.99 39.15 4.94
173 174 2.738521 CTGGAGTTGCGACACCGG 60.739 66.667 14.23 14.23 39.15 5.28
174 175 4.980805 TGGAGTTGCGACACCGGC 62.981 66.667 14.97 0.00 39.15 6.13
188 189 4.735132 CGGCCGACACGACACCAT 62.735 66.667 24.07 0.00 0.00 3.55
189 190 2.813908 GGCCGACACGACACCATC 60.814 66.667 0.00 0.00 0.00 3.51
190 191 2.048597 GCCGACACGACACCATCA 60.049 61.111 0.00 0.00 0.00 3.07
191 192 1.666553 GCCGACACGACACCATCAA 60.667 57.895 0.00 0.00 0.00 2.57
192 193 1.897398 GCCGACACGACACCATCAAC 61.897 60.000 0.00 0.00 0.00 3.18
193 194 0.319555 CCGACACGACACCATCAACT 60.320 55.000 0.00 0.00 0.00 3.16
194 195 0.784178 CGACACGACACCATCAACTG 59.216 55.000 0.00 0.00 0.00 3.16
203 204 3.590824 CATCAACTGGAACGCCCC 58.409 61.111 0.00 0.00 0.00 5.80
204 205 1.303236 CATCAACTGGAACGCCCCA 60.303 57.895 0.00 0.00 34.52 4.96
217 218 4.217210 CCCCAGGGCAACACCACA 62.217 66.667 0.00 0.00 42.05 4.17
218 219 2.598394 CCCAGGGCAACACCACAG 60.598 66.667 0.00 0.00 42.05 3.66
219 220 3.297620 CCAGGGCAACACCACAGC 61.298 66.667 0.00 0.00 42.05 4.40
220 221 3.663176 CAGGGCAACACCACAGCG 61.663 66.667 0.00 0.00 42.05 5.18
221 222 3.872603 AGGGCAACACCACAGCGA 61.873 61.111 0.00 0.00 42.05 4.93
222 223 3.660111 GGGCAACACCACAGCGAC 61.660 66.667 0.00 0.00 42.05 5.19
223 224 3.660111 GGCAACACCACAGCGACC 61.660 66.667 0.00 0.00 38.86 4.79
224 225 3.660111 GCAACACCACAGCGACCC 61.660 66.667 0.00 0.00 0.00 4.46
225 226 2.203139 CAACACCACAGCGACCCA 60.203 61.111 0.00 0.00 0.00 4.51
226 227 1.821759 CAACACCACAGCGACCCAA 60.822 57.895 0.00 0.00 0.00 4.12
227 228 1.822186 AACACCACAGCGACCCAAC 60.822 57.895 0.00 0.00 0.00 3.77
228 229 3.345808 CACCACAGCGACCCAACG 61.346 66.667 0.00 0.00 0.00 4.10
229 230 4.619227 ACCACAGCGACCCAACGG 62.619 66.667 0.00 0.00 0.00 4.44
248 249 2.183300 GCATCCGGTCACACGCTA 59.817 61.111 0.00 0.00 0.00 4.26
249 250 1.227263 GCATCCGGTCACACGCTAT 60.227 57.895 0.00 0.00 0.00 2.97
250 251 0.810031 GCATCCGGTCACACGCTATT 60.810 55.000 0.00 0.00 0.00 1.73
251 252 0.930310 CATCCGGTCACACGCTATTG 59.070 55.000 0.00 0.00 0.00 1.90
252 253 0.179084 ATCCGGTCACACGCTATTGG 60.179 55.000 0.00 0.00 0.00 3.16
253 254 1.813753 CCGGTCACACGCTATTGGG 60.814 63.158 0.00 0.00 0.00 4.12
254 255 1.813753 CGGTCACACGCTATTGGGG 60.814 63.158 0.00 0.00 0.00 4.96
255 256 1.298667 GGTCACACGCTATTGGGGT 59.701 57.895 0.00 0.00 41.97 4.95
260 261 3.087065 ACGCTATTGGGGTGCCTT 58.913 55.556 0.00 0.00 39.69 4.35
261 262 1.077716 ACGCTATTGGGGTGCCTTC 60.078 57.895 0.00 0.00 39.69 3.46
262 263 2.180204 CGCTATTGGGGTGCCTTCG 61.180 63.158 0.00 0.00 0.00 3.79
263 264 2.481471 GCTATTGGGGTGCCTTCGC 61.481 63.158 0.00 0.00 0.00 4.70
264 265 1.823899 CTATTGGGGTGCCTTCGCC 60.824 63.158 0.00 0.00 42.13 5.54
265 266 2.270874 CTATTGGGGTGCCTTCGCCT 62.271 60.000 7.87 0.00 42.48 5.52
266 267 2.265467 TATTGGGGTGCCTTCGCCTC 62.265 60.000 7.87 0.00 43.76 4.70
268 269 4.475135 GGGGTGCCTTCGCCTCTC 62.475 72.222 0.00 0.00 40.26 3.20
269 270 4.475135 GGGTGCCTTCGCCTCTCC 62.475 72.222 0.00 0.00 42.48 3.71
270 271 4.475135 GGTGCCTTCGCCTCTCCC 62.475 72.222 0.00 0.00 39.75 4.30
271 272 4.475135 GTGCCTTCGCCTCTCCCC 62.475 72.222 0.00 0.00 0.00 4.81
273 274 4.168291 GCCTTCGCCTCTCCCCAG 62.168 72.222 0.00 0.00 0.00 4.45
274 275 2.364317 CCTTCGCCTCTCCCCAGA 60.364 66.667 0.00 0.00 0.00 3.86
275 276 2.430610 CCTTCGCCTCTCCCCAGAG 61.431 68.421 0.00 0.00 45.44 3.35
286 287 2.697644 CCCAGAGGAGCCCCCAAT 60.698 66.667 0.00 0.00 37.41 3.16
287 288 1.385915 CCCAGAGGAGCCCCCAATA 60.386 63.158 0.00 0.00 37.41 1.90
288 289 1.422161 CCCAGAGGAGCCCCCAATAG 61.422 65.000 0.00 0.00 37.41 1.73
289 290 1.422161 CCAGAGGAGCCCCCAATAGG 61.422 65.000 0.00 0.00 37.41 2.57
290 291 0.695803 CAGAGGAGCCCCCAATAGGT 60.696 60.000 0.00 0.00 37.41 3.08
291 292 0.046397 AGAGGAGCCCCCAATAGGTT 59.954 55.000 0.00 0.00 37.41 3.50
292 293 0.927029 GAGGAGCCCCCAATAGGTTT 59.073 55.000 0.00 0.00 37.41 3.27
293 294 0.631212 AGGAGCCCCCAATAGGTTTG 59.369 55.000 0.00 0.00 37.41 2.93
294 295 0.335019 GGAGCCCCCAATAGGTTTGT 59.665 55.000 0.00 0.00 34.14 2.83
295 296 1.685180 GGAGCCCCCAATAGGTTTGTC 60.685 57.143 0.00 0.00 34.14 3.18
296 297 1.285078 GAGCCCCCAATAGGTTTGTCT 59.715 52.381 0.00 0.00 0.00 3.41
297 298 1.716503 AGCCCCCAATAGGTTTGTCTT 59.283 47.619 0.00 0.00 0.00 3.01
298 299 2.111792 AGCCCCCAATAGGTTTGTCTTT 59.888 45.455 0.00 0.00 0.00 2.52
299 300 2.903784 GCCCCCAATAGGTTTGTCTTTT 59.096 45.455 0.00 0.00 0.00 2.27
300 301 3.306710 GCCCCCAATAGGTTTGTCTTTTG 60.307 47.826 0.00 0.00 0.00 2.44
301 302 3.260632 CCCCCAATAGGTTTGTCTTTTGG 59.739 47.826 6.97 6.97 42.00 3.28
302 303 4.156477 CCCCAATAGGTTTGTCTTTTGGA 58.844 43.478 13.14 0.00 43.73 3.53
303 304 4.021456 CCCCAATAGGTTTGTCTTTTGGAC 60.021 45.833 13.14 0.00 43.73 4.02
314 315 4.102035 GTCTTTTGGACAGGAATGCATC 57.898 45.455 0.00 0.00 43.94 3.91
315 316 3.760684 GTCTTTTGGACAGGAATGCATCT 59.239 43.478 0.00 0.00 43.94 2.90
316 317 4.219288 GTCTTTTGGACAGGAATGCATCTT 59.781 41.667 0.00 0.00 43.94 2.40
339 340 2.151502 TGTTCTCTCTCCTAGGGCTG 57.848 55.000 9.46 0.00 0.00 4.85
340 341 1.359474 TGTTCTCTCTCCTAGGGCTGT 59.641 52.381 9.46 0.00 0.00 4.40
343 344 1.452145 CTCTCTCCTAGGGCTGTCGC 61.452 65.000 9.46 0.00 0.00 5.19
347 348 4.208686 CCTAGGGCTGTCGCGACC 62.209 72.222 34.34 20.54 36.88 4.79
380 381 1.107538 CGGTTCCTAGGGCGAGATCA 61.108 60.000 9.46 0.00 0.00 2.92
381 382 0.389757 GGTTCCTAGGGCGAGATCAC 59.610 60.000 9.46 0.00 0.00 3.06
382 383 0.389757 GTTCCTAGGGCGAGATCACC 59.610 60.000 9.46 0.00 0.00 4.02
385 386 0.536687 CCTAGGGCGAGATCACCGTA 60.537 60.000 0.00 5.78 0.00 4.02
389 390 1.461091 GGGCGAGATCACCGTATGGA 61.461 60.000 8.33 0.00 39.21 3.41
390 391 0.318784 GGCGAGATCACCGTATGGAC 60.319 60.000 8.33 0.00 39.21 4.02
395 396 1.757118 AGATCACCGTATGGACCTGTG 59.243 52.381 8.33 0.00 39.21 3.66
398 399 1.754803 TCACCGTATGGACCTGTGATC 59.245 52.381 8.33 0.00 39.21 2.92
403 404 2.159043 CGTATGGACCTGTGATCTTGCT 60.159 50.000 0.00 0.00 0.00 3.91
414 415 3.009363 TGTGATCTTGCTTCCCAGATTCA 59.991 43.478 0.00 0.00 0.00 2.57
419 420 3.267812 TCTTGCTTCCCAGATTCAATCCT 59.732 43.478 0.00 0.00 0.00 3.24
429 430 2.782341 AGATTCAATCCTTCCTCCCCTG 59.218 50.000 0.00 0.00 0.00 4.45
431 432 2.059756 TCAATCCTTCCTCCCCTGTT 57.940 50.000 0.00 0.00 0.00 3.16
432 433 1.635487 TCAATCCTTCCTCCCCTGTTG 59.365 52.381 0.00 0.00 0.00 3.33
433 434 1.355720 CAATCCTTCCTCCCCTGTTGT 59.644 52.381 0.00 0.00 0.00 3.32
434 435 1.760405 ATCCTTCCTCCCCTGTTGTT 58.240 50.000 0.00 0.00 0.00 2.83
435 436 1.064825 TCCTTCCTCCCCTGTTGTTC 58.935 55.000 0.00 0.00 0.00 3.18
437 438 0.321653 CTTCCTCCCCTGTTGTTCCG 60.322 60.000 0.00 0.00 0.00 4.30
438 439 0.765135 TTCCTCCCCTGTTGTTCCGA 60.765 55.000 0.00 0.00 0.00 4.55
444 445 0.107654 CCCTGTTGTTCCGATCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
445 446 0.905357 CCTGTTGTTCCGATCCTCCT 59.095 55.000 0.00 0.00 0.00 3.69
446 447 1.134670 CCTGTTGTTCCGATCCTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
452 453 2.519541 CCGATCCTCCTCGCCTCA 60.520 66.667 0.00 0.00 37.33 3.86
455 456 1.175347 CGATCCTCCTCGCCTCATCA 61.175 60.000 0.00 0.00 0.00 3.07
457 458 0.831288 ATCCTCCTCGCCTCATCAGG 60.831 60.000 0.00 0.00 43.82 3.86
458 459 2.506061 CCTCCTCGCCTCATCAGGG 61.506 68.421 0.00 0.00 40.75 4.45
465 466 2.765807 CCTCATCAGGGGTCCGCT 60.766 66.667 1.75 1.75 35.89 5.52
466 467 2.503061 CTCATCAGGGGTCCGCTG 59.497 66.667 26.28 26.28 44.21 5.18
467 468 2.284625 TCATCAGGGGTCCGCTGT 60.285 61.111 29.45 17.30 43.48 4.40
468 469 1.903877 CTCATCAGGGGTCCGCTGTT 61.904 60.000 29.45 21.33 43.48 3.16
470 471 1.026718 CATCAGGGGTCCGCTGTTTC 61.027 60.000 29.45 0.00 43.48 2.78
474 475 2.046217 GGGTCCGCTGTTTCCCTC 60.046 66.667 0.00 0.00 37.18 4.30
476 477 2.342648 GTCCGCTGTTTCCCTCGT 59.657 61.111 0.00 0.00 0.00 4.18
479 480 1.738099 CCGCTGTTTCCCTCGTCTG 60.738 63.158 0.00 0.00 0.00 3.51
481 482 1.371558 GCTGTTTCCCTCGTCTGGT 59.628 57.895 0.00 0.00 0.00 4.00
493 494 3.691342 TCTGGTCGCTGTTCGGGG 61.691 66.667 0.00 0.00 39.05 5.73
494 495 4.003788 CTGGTCGCTGTTCGGGGT 62.004 66.667 0.00 0.00 39.05 4.95
495 496 4.308458 TGGTCGCTGTTCGGGGTG 62.308 66.667 0.00 0.00 39.05 4.61
496 497 3.998672 GGTCGCTGTTCGGGGTGA 61.999 66.667 0.00 0.00 39.05 4.02
498 499 1.810030 GTCGCTGTTCGGGGTGATC 60.810 63.158 0.00 0.00 39.05 2.92
501 502 1.450312 GCTGTTCGGGGTGATCCAG 60.450 63.158 0.00 0.00 37.22 3.86
545 546 3.726517 CTTGGCGGCGACTGGTTG 61.727 66.667 16.45 0.00 0.00 3.77
546 547 4.243008 TTGGCGGCGACTGGTTGA 62.243 61.111 16.45 0.00 0.00 3.18
547 548 4.680237 TGGCGGCGACTGGTTGAG 62.680 66.667 16.45 0.00 0.00 3.02
875 876 1.227823 CCACTTTGGGCACGTCTCA 60.228 57.895 0.00 0.00 32.67 3.27
933 934 1.197721 CTGCGCGACAAAGAAAAGGAT 59.802 47.619 12.10 0.00 0.00 3.24
941 942 1.135286 CAAAGAAAAGGATGCGGAGGC 60.135 52.381 0.00 0.00 40.52 4.70
961 962 1.738099 GATGAGGCGTCGCACTTGT 60.738 57.895 20.50 6.54 0.00 3.16
963 964 2.355837 GAGGCGTCGCACTTGTGA 60.356 61.111 20.50 0.00 0.00 3.58
997 998 1.424493 CGCTGATCGGGTTGAAGAGC 61.424 60.000 3.14 0.00 33.58 4.09
1023 1024 4.717629 CGGCTTCGTCTCACGGCA 62.718 66.667 0.00 0.00 42.81 5.69
1065 1066 2.036862 TCTTGATGATGAGGATGAGGCG 59.963 50.000 0.00 0.00 0.00 5.52
1079 1080 2.844839 GGCGGATCTGGTAGCCCT 60.845 66.667 3.14 0.00 43.54 5.19
1122 1123 2.635427 GGTGATGTCCCCTAATCCTCTC 59.365 54.545 0.00 0.00 0.00 3.20
1140 1141 1.339610 CTCCACATCCAGACGATCTCC 59.660 57.143 0.00 0.00 0.00 3.71
1170 1171 3.788145 CCGGCGTGGGGTAATCCA 61.788 66.667 6.01 0.00 37.22 3.41
1191 1192 1.632589 AAGGTTTGCTGTTCCATCCC 58.367 50.000 0.00 0.00 0.00 3.85
1192 1193 0.779997 AGGTTTGCTGTTCCATCCCT 59.220 50.000 0.00 0.00 0.00 4.20
1194 1195 0.804989 GTTTGCTGTTCCATCCCTCG 59.195 55.000 0.00 0.00 0.00 4.63
1281 1282 1.683365 ATGGATGGTGGGCAAGCAC 60.683 57.895 0.00 0.00 39.59 4.40
1296 1297 3.329231 CACGCGGTGCTTCTGAAA 58.671 55.556 12.47 0.00 0.00 2.69
1308 1309 6.042143 GGTGCTTCTGAAAGTTTTTGATCAA 58.958 36.000 3.38 3.38 34.79 2.57
1312 1313 8.605746 TGCTTCTGAAAGTTTTTGATCAAAATG 58.394 29.630 29.13 15.29 36.72 2.32
1320 1321 7.728847 AGTTTTTGATCAAAATGTTAAGCCC 57.271 32.000 29.13 11.87 39.69 5.19
1331 1332 1.271163 TGTTAAGCCCCTTCAGGTTCG 60.271 52.381 0.00 0.00 0.00 3.95
1335 1336 1.674651 GCCCCTTCAGGTTCGGTTC 60.675 63.158 0.00 0.00 0.00 3.62
1359 1360 1.441729 CCTAGCGATTTGGGCTCGA 59.558 57.895 0.00 0.00 41.80 4.04
1370 1371 5.049474 CGATTTGGGCTCGAATTATGAATCA 60.049 40.000 0.00 0.00 38.38 2.57
1371 1372 6.513230 CGATTTGGGCTCGAATTATGAATCAA 60.513 38.462 0.00 0.00 38.38 2.57
1398 1399 0.969409 GGCTGATGAAGGCCAAGCTT 60.969 55.000 5.01 0.00 46.84 3.74
1419 1420 2.200337 GCGGGAGTTTGCCAAACCT 61.200 57.895 16.37 4.51 42.34 3.50
1437 1438 4.322057 ACCTATTGGGCAGATTTTGAGT 57.678 40.909 0.00 0.00 39.10 3.41
1451 1452 6.534436 CAGATTTTGAGTGTGGAGTCAGATAG 59.466 42.308 0.00 0.00 32.93 2.08
1452 1453 3.876274 TTGAGTGTGGAGTCAGATAGC 57.124 47.619 0.00 0.00 32.93 2.97
1461 1462 1.874231 GAGTCAGATAGCGATGGTCGA 59.126 52.381 3.20 0.00 43.74 4.20
1482 1483 1.993653 CTGGGGTGGCTTCATGAGA 59.006 57.895 0.00 0.00 0.00 3.27
1485 1486 0.107459 GGGGTGGCTTCATGAGAGTC 60.107 60.000 0.00 0.00 0.00 3.36
1488 1489 1.552337 GGTGGCTTCATGAGAGTCAGA 59.448 52.381 11.01 0.00 0.00 3.27
1498 1499 6.350629 TCATGAGAGTCAGAACTGAAATCA 57.649 37.500 6.08 10.57 41.85 2.57
1503 1504 6.426025 TGAGAGTCAGAACTGAAATCAATGTG 59.574 38.462 6.08 0.00 41.85 3.21
1515 1516 1.753930 TCAATGTGCATGAGCCGATT 58.246 45.000 0.00 0.00 41.13 3.34
1521 1522 1.815421 GCATGAGCCGATTGTCCGT 60.815 57.895 0.00 0.00 33.58 4.69
1531 1532 6.207221 TGAGCCGATTGTCCGTTATATTACTA 59.793 38.462 0.00 0.00 0.00 1.82
1536 1537 8.024865 CCGATTGTCCGTTATATTACTATGACA 58.975 37.037 5.28 5.28 0.00 3.58
1594 1595 1.278238 GTATGAGAGGTTGCCGTTCG 58.722 55.000 0.00 0.00 0.00 3.95
1605 1606 0.599204 TGCCGTTCGTCTGTTTCTCC 60.599 55.000 0.00 0.00 0.00 3.71
1617 1618 1.271543 TGTTTCTCCTGTGGCATCCTG 60.272 52.381 0.00 0.00 0.00 3.86
1628 1629 1.075748 GCATCCTGGGGCATTCCTT 60.076 57.895 6.42 0.00 35.33 3.36
1632 1633 1.683365 CCTGGGGCATTCCTTGGTG 60.683 63.158 0.00 0.00 35.33 4.17
1647 1648 0.252696 TGGTGATGTGCCCTACTCCT 60.253 55.000 0.00 0.00 0.00 3.69
1654 1655 3.404773 GCCCTACTCCTGGCTTGT 58.595 61.111 0.00 0.00 44.46 3.16
1672 1673 0.608640 GTGGGATGAGAACGGTGACT 59.391 55.000 0.00 0.00 0.00 3.41
1686 1687 1.571919 GTGACTTACCCTATGCTGCG 58.428 55.000 0.00 0.00 0.00 5.18
1695 1696 1.069204 CCCTATGCTGCGAAGAAGCTA 59.931 52.381 0.00 0.00 41.42 3.32
1725 1726 2.298446 TGATGAGCATTCGAGGAGATCC 59.702 50.000 0.00 0.00 0.00 3.36
1731 1732 4.916314 TCGAGGAGATCCGGGGGC 62.916 72.222 0.00 0.00 42.08 5.80
1734 1735 4.565850 AGGAGATCCGGGGGCTCC 62.566 72.222 22.70 22.70 46.75 4.70
1744 1745 2.066999 GGGGGCTCCAGGTCTAGTG 61.067 68.421 4.16 0.00 35.00 2.74
1752 1753 2.055042 CAGGTCTAGTGCGGCCTCT 61.055 63.158 0.00 0.00 0.00 3.69
1765 1766 0.818296 GGCCTCTTCTTCGTCTGCTA 59.182 55.000 0.00 0.00 0.00 3.49
1766 1767 1.470112 GGCCTCTTCTTCGTCTGCTAC 60.470 57.143 0.00 0.00 0.00 3.58
1775 1776 3.271014 GTCTGCTACGACGGGTGA 58.729 61.111 0.00 0.00 0.00 4.02
1776 1777 1.154073 GTCTGCTACGACGGGTGAC 60.154 63.158 0.00 2.04 0.00 3.67
1794 1795 2.396157 CCGCGCCTTTGGTAACTCC 61.396 63.158 0.00 0.00 37.61 3.85
1795 1796 1.669760 CGCGCCTTTGGTAACTCCA 60.670 57.895 0.00 0.00 45.60 3.86
1807 1808 5.452078 TGGTAACTCCAAATTTGAAGCTG 57.548 39.130 19.86 2.46 44.12 4.24
1809 1810 2.712057 ACTCCAAATTTGAAGCTGCG 57.288 45.000 19.86 1.00 0.00 5.18
1812 1813 0.318120 CCAAATTTGAAGCTGCGGGT 59.682 50.000 19.86 0.00 0.00 5.28
1813 1814 1.270252 CCAAATTTGAAGCTGCGGGTT 60.270 47.619 19.86 10.33 35.72 4.11
1815 1816 3.368323 CCAAATTTGAAGCTGCGGGTTAT 60.368 43.478 19.86 0.00 32.93 1.89
1817 1818 1.904287 TTTGAAGCTGCGGGTTATGT 58.096 45.000 10.54 0.00 32.93 2.29
1818 1819 1.448985 TTGAAGCTGCGGGTTATGTC 58.551 50.000 10.54 0.00 32.93 3.06
1819 1820 0.323302 TGAAGCTGCGGGTTATGTCA 59.677 50.000 10.54 0.88 32.93 3.58
1821 1822 1.130561 GAAGCTGCGGGTTATGTCAAC 59.869 52.381 10.54 0.00 32.93 3.18
1824 1825 1.676014 GCTGCGGGTTATGTCAACTCT 60.676 52.381 0.00 0.00 0.00 3.24
1825 1826 2.699954 CTGCGGGTTATGTCAACTCTT 58.300 47.619 0.00 0.00 0.00 2.85
1826 1827 2.673368 CTGCGGGTTATGTCAACTCTTC 59.327 50.000 0.00 0.00 0.00 2.87
1830 1831 3.010420 GGGTTATGTCAACTCTTCTGCC 58.990 50.000 0.00 0.00 0.00 4.85
1831 1832 3.010420 GGTTATGTCAACTCTTCTGCCC 58.990 50.000 0.00 0.00 0.00 5.36
1833 1834 0.036010 ATGTCAACTCTTCTGCCCCG 60.036 55.000 0.00 0.00 0.00 5.73
1846 1847 0.178888 TGCCCCGGATGGTATGGATA 60.179 55.000 0.73 0.00 0.00 2.59
1853 1854 2.354103 CGGATGGTATGGATACTGCTGG 60.354 54.545 0.00 0.00 33.81 4.85
1854 1855 2.639839 GGATGGTATGGATACTGCTGGT 59.360 50.000 0.00 0.00 33.81 4.00
1860 1861 1.583556 TGGATACTGCTGGTGGTGAT 58.416 50.000 0.00 0.00 37.61 3.06
1866 1867 1.143684 ACTGCTGGTGGTGATGTTTCT 59.856 47.619 0.00 0.00 0.00 2.52
1869 1870 1.197721 GCTGGTGGTGATGTTTCTTCG 59.802 52.381 0.00 0.00 0.00 3.79
1879 1880 5.066505 GGTGATGTTTCTTCGCCTATCAAAT 59.933 40.000 7.62 0.00 40.03 2.32
1880 1881 6.404734 GGTGATGTTTCTTCGCCTATCAAATT 60.405 38.462 7.62 0.00 40.03 1.82
1881 1882 7.029563 GTGATGTTTCTTCGCCTATCAAATTT 58.970 34.615 0.00 0.00 0.00 1.82
1882 1883 7.008628 GTGATGTTTCTTCGCCTATCAAATTTG 59.991 37.037 12.15 12.15 0.00 2.32
1886 1887 2.818751 TCGCCTATCAAATTTGGGGT 57.181 45.000 17.90 7.47 34.66 4.95
1896 1898 2.424842 AATTTGGGGTGGCTGCTCGA 62.425 55.000 0.00 0.00 0.00 4.04
1923 1925 3.423154 CGCACTTTCAGGGGTCGC 61.423 66.667 0.00 0.00 0.00 5.19
1926 1928 4.699522 ACTTTCAGGGGTCGCGGC 62.700 66.667 6.13 3.04 0.00 6.53
1951 1953 3.798511 GGGCCAGTGACCCTAGCC 61.799 72.222 7.37 2.02 46.22 3.93
1963 1965 2.817844 GACCCTAGCCGTGAATTGTTTT 59.182 45.455 0.00 0.00 0.00 2.43
1965 1967 2.817258 CCCTAGCCGTGAATTGTTTTCA 59.183 45.455 0.00 0.00 0.00 2.69
1966 1968 3.443681 CCCTAGCCGTGAATTGTTTTCAT 59.556 43.478 0.00 0.00 0.00 2.57
1967 1969 4.438744 CCCTAGCCGTGAATTGTTTTCATC 60.439 45.833 0.00 0.00 0.00 2.92
1969 1971 2.890311 AGCCGTGAATTGTTTTCATCCA 59.110 40.909 0.00 0.00 0.00 3.41
1971 1973 3.233578 CCGTGAATTGTTTTCATCCACG 58.766 45.455 0.00 0.00 0.00 4.94
1980 1982 3.616284 TTCATCCACGCGGAAGAAA 57.384 47.368 12.47 0.00 44.09 2.52
1983 1985 3.255883 TTCATCCACGCGGAAGAAATCC 61.256 50.000 12.47 0.00 44.09 3.01
1992 1994 2.043953 AAGAAATCCGGGGCTGCC 60.044 61.111 11.05 11.05 0.00 4.85
2013 2015 2.497675 CGGTCAGAAGAGGAAATCAGGA 59.502 50.000 0.00 0.00 0.00 3.86
2020 2022 5.476254 CAGAAGAGGAAATCAGGAAAAGCTT 59.524 40.000 0.00 0.00 0.00 3.74
2034 2036 2.797177 AAGCTTCCACATCTTCTCCC 57.203 50.000 0.00 0.00 0.00 4.30
2035 2037 1.963985 AGCTTCCACATCTTCTCCCT 58.036 50.000 0.00 0.00 0.00 4.20
2038 2040 2.158971 GCTTCCACATCTTCTCCCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
2039 2041 2.928036 TCCACATCTTCTCCCTCTCA 57.072 50.000 0.00 0.00 0.00 3.27
2042 2044 2.770802 CCACATCTTCTCCCTCTCATGT 59.229 50.000 0.00 0.00 0.00 3.21
2043 2045 3.431905 CCACATCTTCTCCCTCTCATGTG 60.432 52.174 0.00 0.00 40.45 3.21
2044 2046 3.197333 CACATCTTCTCCCTCTCATGTGT 59.803 47.826 0.00 0.00 37.44 3.72
2045 2047 3.843027 ACATCTTCTCCCTCTCATGTGTT 59.157 43.478 0.00 0.00 0.00 3.32
2046 2048 3.969287 TCTTCTCCCTCTCATGTGTTG 57.031 47.619 0.00 0.00 0.00 3.33
2048 2050 2.325661 TCTCCCTCTCATGTGTTGGA 57.674 50.000 9.82 8.63 0.00 3.53
2059 2067 3.843619 TCATGTGTTGGAGGAGGACAATA 59.156 43.478 0.00 0.00 0.00 1.90
2061 2069 2.304761 TGTGTTGGAGGAGGACAATACC 59.695 50.000 0.00 0.00 37.74 2.73
2074 2082 3.010420 GACAATACCCTTGCTCTGGTTC 58.990 50.000 0.00 0.00 36.04 3.62
2076 2084 1.668826 ATACCCTTGCTCTGGTTCCA 58.331 50.000 0.00 0.00 36.04 3.53
2079 2087 0.984230 CCCTTGCTCTGGTTCCAGTA 59.016 55.000 17.00 5.14 35.70 2.74
2080 2088 1.339151 CCCTTGCTCTGGTTCCAGTAC 60.339 57.143 17.00 11.41 35.70 2.73
2081 2089 1.339151 CCTTGCTCTGGTTCCAGTACC 60.339 57.143 17.00 8.40 38.73 3.34
2084 2092 1.898154 CTCTGGTTCCAGTACCGGG 59.102 63.158 17.00 0.00 43.51 5.73
2089 2097 1.294459 GTTCCAGTACCGGGTGGAC 59.706 63.158 19.12 12.08 42.75 4.02
2090 2098 1.914764 TTCCAGTACCGGGTGGACC 60.915 63.158 19.12 0.00 42.75 4.46
2094 2102 1.152183 AGTACCGGGTGGACCTGTT 60.152 57.895 10.66 0.00 40.86 3.16
2095 2103 0.765519 AGTACCGGGTGGACCTGTTT 60.766 55.000 10.66 0.00 40.86 2.83
2097 2105 0.108963 TACCGGGTGGACCTGTTTTG 59.891 55.000 10.66 0.00 40.86 2.44
2099 2107 1.452145 CCGGGTGGACCTGTTTTGTG 61.452 60.000 3.93 0.00 40.86 3.33
2101 2109 1.029681 GGGTGGACCTGTTTTGTGTC 58.970 55.000 0.00 0.00 35.85 3.67
2103 2111 2.306847 GGTGGACCTGTTTTGTGTCAT 58.693 47.619 0.00 0.00 0.00 3.06
2105 2113 1.680735 TGGACCTGTTTTGTGTCATGC 59.319 47.619 0.00 0.00 0.00 4.06
2111 2119 1.337703 TGTTTTGTGTCATGCTGAGGC 59.662 47.619 0.00 0.00 39.26 4.70
2115 2123 0.397564 TGTGTCATGCTGAGGCTCAA 59.602 50.000 19.29 4.84 39.59 3.02
2125 2133 1.079750 GAGGCTCAAGACACCGACC 60.080 63.158 10.25 0.00 0.00 4.79
2127 2135 0.251653 AGGCTCAAGACACCGACCTA 60.252 55.000 0.00 0.00 0.00 3.08
2148 2156 3.869065 AGAGTCCAACAAGAAACAACGA 58.131 40.909 0.00 0.00 0.00 3.85
2155 2163 6.020678 GTCCAACAAGAAACAACGAATTTCAG 60.021 38.462 11.42 7.28 38.32 3.02
2157 2165 6.529829 CCAACAAGAAACAACGAATTTCAGAA 59.470 34.615 11.42 0.00 38.32 3.02
2158 2166 7.383361 CAACAAGAAACAACGAATTTCAGAAC 58.617 34.615 11.42 0.00 38.32 3.01
2159 2167 6.852664 ACAAGAAACAACGAATTTCAGAACT 58.147 32.000 11.42 0.00 38.32 3.01
2240 2248 1.216710 CTGGAACTGTCGAGGCCTC 59.783 63.158 23.79 23.79 0.00 4.70
2295 2303 1.053424 AGTGAAGCTTTACCGACCCA 58.947 50.000 17.03 0.00 0.00 4.51
2357 2365 4.385825 GTGTGAGGAACTTTATGTGGTCA 58.614 43.478 0.00 0.00 41.55 4.02
2363 2371 2.200373 ACTTTATGTGGTCACTGGGC 57.800 50.000 2.66 0.00 0.00 5.36
2384 2392 0.606096 TTTCTGGCTGCTACGCTGTA 59.394 50.000 0.00 0.00 0.00 2.74
2400 2408 2.097791 GCTGTAAGTAGTGAGGGTCTCG 59.902 54.545 0.00 0.00 35.30 4.04
2402 2410 2.306805 TGTAAGTAGTGAGGGTCTCGGA 59.693 50.000 0.00 0.00 32.35 4.55
2412 2420 1.304217 GGTCTCGGAGGTGGTCTGA 60.304 63.158 4.96 0.00 38.34 3.27
2422 2430 3.323979 GGAGGTGGTCTGACTTTGTTCTA 59.676 47.826 7.85 0.00 0.00 2.10
2487 2495 5.689383 ATGCATCGACACTTTTGTTAAGT 57.311 34.783 0.00 0.00 35.47 2.24
2500 2508 7.169645 CACTTTTGTTAAGTTCAATGATGGTGG 59.830 37.037 0.00 0.00 0.00 4.61
2501 2509 6.723298 TTTGTTAAGTTCAATGATGGTGGT 57.277 33.333 0.00 0.00 0.00 4.16
2502 2510 6.723298 TTGTTAAGTTCAATGATGGTGGTT 57.277 33.333 0.00 0.00 0.00 3.67
2740 2765 2.753247 GGACTTGGGATACTCAGGACT 58.247 52.381 0.00 0.00 0.00 3.85
2915 2940 1.393539 TCTTTAGTTTGCAGCGATCGC 59.606 47.619 32.15 32.15 42.33 4.58
2994 3019 1.679944 CCGACGACTACAAGGGGACTA 60.680 57.143 0.00 0.00 42.68 2.59
3077 3102 0.250252 TGAAACATGTCGCTGGCTCA 60.250 50.000 0.00 0.00 0.00 4.26
3131 3156 4.592351 TGCATCAGAAGGAAAATTGGGAAA 59.408 37.500 0.00 0.00 0.00 3.13
3161 3186 1.412710 CGCCTGGCTTCTATTAGGTCA 59.587 52.381 17.92 0.00 32.85 4.02
3185 3210 0.108233 CTCCAACTCCTGCTCTGCTC 60.108 60.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.714798 GGGGGTGACATCTAATTCCTGTA 59.285 47.826 0.00 0.00 0.00 2.74
2 3 2.509548 TGGGGGTGACATCTAATTCCTG 59.490 50.000 0.00 0.00 0.00 3.86
3 4 2.858644 TGGGGGTGACATCTAATTCCT 58.141 47.619 0.00 0.00 0.00 3.36
4 5 3.288092 GTTGGGGGTGACATCTAATTCC 58.712 50.000 0.00 0.00 0.00 3.01
5 6 3.947834 CTGTTGGGGGTGACATCTAATTC 59.052 47.826 0.00 0.00 0.00 2.17
6 7 3.877735 GCTGTTGGGGGTGACATCTAATT 60.878 47.826 0.00 0.00 0.00 1.40
7 8 2.357154 GCTGTTGGGGGTGACATCTAAT 60.357 50.000 0.00 0.00 0.00 1.73
8 9 1.004277 GCTGTTGGGGGTGACATCTAA 59.996 52.381 0.00 0.00 0.00 2.10
9 10 0.618458 GCTGTTGGGGGTGACATCTA 59.382 55.000 0.00 0.00 0.00 1.98
10 11 1.380302 GCTGTTGGGGGTGACATCT 59.620 57.895 0.00 0.00 0.00 2.90
11 12 0.539438 TTGCTGTTGGGGGTGACATC 60.539 55.000 0.00 0.00 0.00 3.06
12 13 0.105760 TTTGCTGTTGGGGGTGACAT 60.106 50.000 0.00 0.00 0.00 3.06
13 14 1.040339 GTTTGCTGTTGGGGGTGACA 61.040 55.000 0.00 0.00 0.00 3.58
14 15 1.739667 GTTTGCTGTTGGGGGTGAC 59.260 57.895 0.00 0.00 0.00 3.67
15 16 1.456705 GGTTTGCTGTTGGGGGTGA 60.457 57.895 0.00 0.00 0.00 4.02
16 17 2.506957 GGGTTTGCTGTTGGGGGTG 61.507 63.158 0.00 0.00 0.00 4.61
17 18 2.123033 GGGTTTGCTGTTGGGGGT 60.123 61.111 0.00 0.00 0.00 4.95
18 19 1.341156 TTTGGGTTTGCTGTTGGGGG 61.341 55.000 0.00 0.00 0.00 5.40
19 20 0.764271 ATTTGGGTTTGCTGTTGGGG 59.236 50.000 0.00 0.00 0.00 4.96
20 21 3.979101 ATATTTGGGTTTGCTGTTGGG 57.021 42.857 0.00 0.00 0.00 4.12
21 22 4.892433 TGAATATTTGGGTTTGCTGTTGG 58.108 39.130 0.00 0.00 0.00 3.77
22 23 5.581874 GGATGAATATTTGGGTTTGCTGTTG 59.418 40.000 0.00 0.00 0.00 3.33
23 24 5.624281 CGGATGAATATTTGGGTTTGCTGTT 60.624 40.000 0.00 0.00 0.00 3.16
24 25 4.142182 CGGATGAATATTTGGGTTTGCTGT 60.142 41.667 0.00 0.00 0.00 4.40
25 26 4.097741 TCGGATGAATATTTGGGTTTGCTG 59.902 41.667 0.00 0.00 0.00 4.41
26 27 4.277476 TCGGATGAATATTTGGGTTTGCT 58.723 39.130 0.00 0.00 0.00 3.91
27 28 4.647424 TCGGATGAATATTTGGGTTTGC 57.353 40.909 0.00 0.00 0.00 3.68
28 29 5.043248 GCTTCGGATGAATATTTGGGTTTG 58.957 41.667 0.00 0.00 32.61 2.93
29 30 4.709397 TGCTTCGGATGAATATTTGGGTTT 59.291 37.500 0.00 0.00 32.61 3.27
30 31 4.277476 TGCTTCGGATGAATATTTGGGTT 58.723 39.130 0.00 0.00 32.61 4.11
31 32 3.885297 CTGCTTCGGATGAATATTTGGGT 59.115 43.478 0.00 0.00 32.61 4.51
32 33 4.136796 TCTGCTTCGGATGAATATTTGGG 58.863 43.478 0.00 0.00 32.61 4.12
33 34 4.320057 GCTCTGCTTCGGATGAATATTTGG 60.320 45.833 0.00 0.00 32.61 3.28
34 35 4.274214 TGCTCTGCTTCGGATGAATATTTG 59.726 41.667 0.00 0.00 32.61 2.32
35 36 4.454678 TGCTCTGCTTCGGATGAATATTT 58.545 39.130 0.00 0.00 32.61 1.40
36 37 4.077300 TGCTCTGCTTCGGATGAATATT 57.923 40.909 0.00 0.00 32.61 1.28
37 38 3.758755 TGCTCTGCTTCGGATGAATAT 57.241 42.857 0.00 0.00 32.61 1.28
38 39 3.758755 ATGCTCTGCTTCGGATGAATA 57.241 42.857 0.00 0.00 32.61 1.75
39 40 2.634815 ATGCTCTGCTTCGGATGAAT 57.365 45.000 0.00 0.00 32.61 2.57
40 41 2.408271 AATGCTCTGCTTCGGATGAA 57.592 45.000 0.00 0.00 0.00 2.57
41 42 2.408271 AAATGCTCTGCTTCGGATGA 57.592 45.000 0.00 0.00 0.00 2.92
42 43 3.498927 AAAAATGCTCTGCTTCGGATG 57.501 42.857 0.00 0.00 0.00 3.51
43 44 4.009675 TGTAAAAATGCTCTGCTTCGGAT 58.990 39.130 0.00 0.00 0.00 4.18
44 45 3.407698 TGTAAAAATGCTCTGCTTCGGA 58.592 40.909 0.00 0.00 0.00 4.55
45 46 3.829886 TGTAAAAATGCTCTGCTTCGG 57.170 42.857 0.00 0.00 0.00 4.30
46 47 6.718388 TCATATGTAAAAATGCTCTGCTTCG 58.282 36.000 1.90 0.00 0.00 3.79
47 48 8.400947 TCTTCATATGTAAAAATGCTCTGCTTC 58.599 33.333 1.90 0.00 0.00 3.86
48 49 8.284945 TCTTCATATGTAAAAATGCTCTGCTT 57.715 30.769 1.90 0.00 0.00 3.91
49 50 7.870509 TCTTCATATGTAAAAATGCTCTGCT 57.129 32.000 1.90 0.00 0.00 4.24
59 60 9.878667 TCGGTCTTGTAATCTTCATATGTAAAA 57.121 29.630 1.90 0.00 0.00 1.52
60 61 9.529325 CTCGGTCTTGTAATCTTCATATGTAAA 57.471 33.333 1.90 0.00 0.00 2.01
61 62 7.652105 GCTCGGTCTTGTAATCTTCATATGTAA 59.348 37.037 1.90 0.00 0.00 2.41
62 63 7.014326 AGCTCGGTCTTGTAATCTTCATATGTA 59.986 37.037 1.90 0.00 0.00 2.29
63 64 5.986135 GCTCGGTCTTGTAATCTTCATATGT 59.014 40.000 1.90 0.00 0.00 2.29
64 65 6.145209 CAGCTCGGTCTTGTAATCTTCATATG 59.855 42.308 0.00 0.00 0.00 1.78
65 66 6.040955 TCAGCTCGGTCTTGTAATCTTCATAT 59.959 38.462 0.00 0.00 0.00 1.78
66 67 5.359860 TCAGCTCGGTCTTGTAATCTTCATA 59.640 40.000 0.00 0.00 0.00 2.15
67 68 4.160439 TCAGCTCGGTCTTGTAATCTTCAT 59.840 41.667 0.00 0.00 0.00 2.57
68 69 3.509967 TCAGCTCGGTCTTGTAATCTTCA 59.490 43.478 0.00 0.00 0.00 3.02
69 70 4.109050 CTCAGCTCGGTCTTGTAATCTTC 58.891 47.826 0.00 0.00 0.00 2.87
70 71 3.764434 TCTCAGCTCGGTCTTGTAATCTT 59.236 43.478 0.00 0.00 0.00 2.40
71 72 3.357203 TCTCAGCTCGGTCTTGTAATCT 58.643 45.455 0.00 0.00 0.00 2.40
72 73 3.784701 TCTCAGCTCGGTCTTGTAATC 57.215 47.619 0.00 0.00 0.00 1.75
73 74 3.181471 CCATCTCAGCTCGGTCTTGTAAT 60.181 47.826 0.00 0.00 0.00 1.89
74 75 2.166459 CCATCTCAGCTCGGTCTTGTAA 59.834 50.000 0.00 0.00 0.00 2.41
75 76 1.751351 CCATCTCAGCTCGGTCTTGTA 59.249 52.381 0.00 0.00 0.00 2.41
76 77 0.534412 CCATCTCAGCTCGGTCTTGT 59.466 55.000 0.00 0.00 0.00 3.16
77 78 0.820226 TCCATCTCAGCTCGGTCTTG 59.180 55.000 0.00 0.00 0.00 3.02
78 79 0.820871 GTCCATCTCAGCTCGGTCTT 59.179 55.000 0.00 0.00 0.00 3.01
79 80 0.033601 AGTCCATCTCAGCTCGGTCT 60.034 55.000 0.00 0.00 0.00 3.85
80 81 0.383949 GAGTCCATCTCAGCTCGGTC 59.616 60.000 0.00 0.00 42.34 4.79
81 82 1.380403 CGAGTCCATCTCAGCTCGGT 61.380 60.000 5.07 0.00 44.68 4.69
82 83 1.358402 CGAGTCCATCTCAGCTCGG 59.642 63.158 5.07 0.00 44.68 4.63
84 85 0.102120 CCACGAGTCCATCTCAGCTC 59.898 60.000 0.00 0.00 42.88 4.09
85 86 0.323816 TCCACGAGTCCATCTCAGCT 60.324 55.000 0.00 0.00 42.88 4.24
86 87 0.749649 ATCCACGAGTCCATCTCAGC 59.250 55.000 0.00 0.00 42.88 4.26
87 88 2.428530 TGAATCCACGAGTCCATCTCAG 59.571 50.000 0.00 0.00 42.88 3.35
88 89 2.166459 GTGAATCCACGAGTCCATCTCA 59.834 50.000 0.00 0.00 42.88 3.27
89 90 2.166459 TGTGAATCCACGAGTCCATCTC 59.834 50.000 0.00 0.00 46.06 2.75
90 91 2.179427 TGTGAATCCACGAGTCCATCT 58.821 47.619 0.00 0.00 46.06 2.90
91 92 2.672961 TGTGAATCCACGAGTCCATC 57.327 50.000 0.00 0.00 46.06 3.51
92 93 2.910199 CATGTGAATCCACGAGTCCAT 58.090 47.619 0.00 0.00 46.06 3.41
93 94 1.675714 GCATGTGAATCCACGAGTCCA 60.676 52.381 0.00 0.00 46.06 4.02
94 95 1.009829 GCATGTGAATCCACGAGTCC 58.990 55.000 0.00 0.00 46.06 3.85
95 96 1.725641 TGCATGTGAATCCACGAGTC 58.274 50.000 0.00 0.00 46.06 3.36
96 97 2.079158 CTTGCATGTGAATCCACGAGT 58.921 47.619 0.00 0.00 46.06 4.18
97 98 2.349590 TCTTGCATGTGAATCCACGAG 58.650 47.619 0.00 0.00 46.06 4.18
98 99 2.470983 TCTTGCATGTGAATCCACGA 57.529 45.000 0.00 0.00 46.06 4.35
99 100 2.223409 CCATCTTGCATGTGAATCCACG 60.223 50.000 0.00 0.00 46.06 4.94
100 101 2.756760 ACCATCTTGCATGTGAATCCAC 59.243 45.455 0.00 0.00 43.46 4.02
101 102 3.018856 GACCATCTTGCATGTGAATCCA 58.981 45.455 0.00 0.00 0.00 3.41
102 103 3.018856 TGACCATCTTGCATGTGAATCC 58.981 45.455 0.00 0.00 0.00 3.01
103 104 3.066342 CCTGACCATCTTGCATGTGAATC 59.934 47.826 0.00 1.31 0.00 2.52
104 105 3.021695 CCTGACCATCTTGCATGTGAAT 58.978 45.455 0.00 0.00 0.00 2.57
105 106 2.224843 ACCTGACCATCTTGCATGTGAA 60.225 45.455 0.00 0.00 0.00 3.18
106 107 1.352017 ACCTGACCATCTTGCATGTGA 59.648 47.619 0.00 0.00 0.00 3.58
107 108 1.741706 GACCTGACCATCTTGCATGTG 59.258 52.381 0.00 0.00 0.00 3.21
108 109 1.676916 CGACCTGACCATCTTGCATGT 60.677 52.381 0.00 0.00 0.00 3.21
109 110 1.012086 CGACCTGACCATCTTGCATG 58.988 55.000 0.00 0.00 0.00 4.06
110 111 0.745845 GCGACCTGACCATCTTGCAT 60.746 55.000 0.00 0.00 0.00 3.96
111 112 1.375908 GCGACCTGACCATCTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
112 113 0.674895 AAGCGACCTGACCATCTTGC 60.675 55.000 0.00 0.00 0.00 4.01
113 114 2.672961 TAAGCGACCTGACCATCTTG 57.327 50.000 0.00 0.00 0.00 3.02
114 115 2.674177 CGTTAAGCGACCTGACCATCTT 60.674 50.000 0.00 0.00 44.77 2.40
115 116 1.135083 CGTTAAGCGACCTGACCATCT 60.135 52.381 0.00 0.00 44.77 2.90
116 117 1.278238 CGTTAAGCGACCTGACCATC 58.722 55.000 0.00 0.00 44.77 3.51
117 118 0.606604 ACGTTAAGCGACCTGACCAT 59.393 50.000 4.79 0.00 44.77 3.55
118 119 0.319211 CACGTTAAGCGACCTGACCA 60.319 55.000 4.79 0.00 44.77 4.02
119 120 1.012486 CCACGTTAAGCGACCTGACC 61.012 60.000 4.79 0.00 44.77 4.02
120 121 0.038892 TCCACGTTAAGCGACCTGAC 60.039 55.000 4.79 0.00 44.77 3.51
121 122 0.038892 GTCCACGTTAAGCGACCTGA 60.039 55.000 4.79 0.00 44.77 3.86
122 123 0.319211 TGTCCACGTTAAGCGACCTG 60.319 55.000 4.79 0.00 44.77 4.00
123 124 0.390124 TTGTCCACGTTAAGCGACCT 59.610 50.000 4.79 0.00 44.77 3.85
124 125 0.788391 CTTGTCCACGTTAAGCGACC 59.212 55.000 4.79 0.00 44.77 4.79
125 126 1.494824 ACTTGTCCACGTTAAGCGAC 58.505 50.000 4.79 0.00 44.77 5.19
126 127 2.228138 AACTTGTCCACGTTAAGCGA 57.772 45.000 4.79 0.00 44.77 4.93
128 129 4.799419 TTGTAACTTGTCCACGTTAAGC 57.201 40.909 0.00 0.00 28.84 3.09
129 130 6.635239 CCAATTTGTAACTTGTCCACGTTAAG 59.365 38.462 0.00 0.00 28.84 1.85
130 131 6.318144 TCCAATTTGTAACTTGTCCACGTTAA 59.682 34.615 0.00 0.00 28.84 2.01
131 132 5.821470 TCCAATTTGTAACTTGTCCACGTTA 59.179 36.000 0.00 0.00 0.00 3.18
132 133 4.641094 TCCAATTTGTAACTTGTCCACGTT 59.359 37.500 0.00 0.00 0.00 3.99
133 134 4.035909 GTCCAATTTGTAACTTGTCCACGT 59.964 41.667 0.00 0.00 0.00 4.49
134 135 4.274950 AGTCCAATTTGTAACTTGTCCACG 59.725 41.667 0.00 0.00 0.00 4.94
135 136 5.507315 CCAGTCCAATTTGTAACTTGTCCAC 60.507 44.000 0.00 0.00 0.00 4.02
136 137 4.582656 CCAGTCCAATTTGTAACTTGTCCA 59.417 41.667 0.00 0.00 0.00 4.02
137 138 4.825085 TCCAGTCCAATTTGTAACTTGTCC 59.175 41.667 0.00 0.00 0.00 4.02
138 139 5.531287 ACTCCAGTCCAATTTGTAACTTGTC 59.469 40.000 0.00 0.00 0.00 3.18
139 140 5.445964 ACTCCAGTCCAATTTGTAACTTGT 58.554 37.500 0.00 0.00 0.00 3.16
140 141 6.208644 CAACTCCAGTCCAATTTGTAACTTG 58.791 40.000 0.00 0.00 0.00 3.16
141 142 5.221244 GCAACTCCAGTCCAATTTGTAACTT 60.221 40.000 0.00 0.00 0.00 2.66
142 143 4.278419 GCAACTCCAGTCCAATTTGTAACT 59.722 41.667 0.00 0.00 0.00 2.24
143 144 4.546570 GCAACTCCAGTCCAATTTGTAAC 58.453 43.478 0.00 0.00 0.00 2.50
144 145 3.252215 CGCAACTCCAGTCCAATTTGTAA 59.748 43.478 0.00 0.00 0.00 2.41
145 146 2.811431 CGCAACTCCAGTCCAATTTGTA 59.189 45.455 0.00 0.00 0.00 2.41
146 147 1.608590 CGCAACTCCAGTCCAATTTGT 59.391 47.619 0.00 0.00 0.00 2.83
147 148 1.879380 TCGCAACTCCAGTCCAATTTG 59.121 47.619 0.00 0.00 0.00 2.32
148 149 1.880027 GTCGCAACTCCAGTCCAATTT 59.120 47.619 0.00 0.00 0.00 1.82
149 150 1.202758 TGTCGCAACTCCAGTCCAATT 60.203 47.619 0.00 0.00 0.00 2.32
150 151 0.396435 TGTCGCAACTCCAGTCCAAT 59.604 50.000 0.00 0.00 0.00 3.16
151 152 0.531974 GTGTCGCAACTCCAGTCCAA 60.532 55.000 0.00 0.00 0.00 3.53
152 153 1.069090 GTGTCGCAACTCCAGTCCA 59.931 57.895 0.00 0.00 0.00 4.02
153 154 1.668151 GGTGTCGCAACTCCAGTCC 60.668 63.158 0.00 0.00 38.63 3.85
154 155 2.022129 CGGTGTCGCAACTCCAGTC 61.022 63.158 0.00 0.00 38.69 3.51
155 156 2.029073 CGGTGTCGCAACTCCAGT 59.971 61.111 0.00 0.00 38.69 4.00
156 157 2.738521 CCGGTGTCGCAACTCCAG 60.739 66.667 0.00 0.00 38.69 3.86
157 158 4.980805 GCCGGTGTCGCAACTCCA 62.981 66.667 1.90 0.00 38.69 3.86
171 172 4.735132 ATGGTGTCGTGTCGGCCG 62.735 66.667 22.12 22.12 0.00 6.13
172 173 2.813908 GATGGTGTCGTGTCGGCC 60.814 66.667 0.00 0.00 0.00 6.13
173 174 1.666553 TTGATGGTGTCGTGTCGGC 60.667 57.895 0.00 0.00 0.00 5.54
174 175 0.319555 AGTTGATGGTGTCGTGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
175 176 0.784178 CAGTTGATGGTGTCGTGTCG 59.216 55.000 0.00 0.00 0.00 4.35
176 177 1.148310 CCAGTTGATGGTGTCGTGTC 58.852 55.000 0.00 0.00 44.91 3.67
177 178 3.305709 CCAGTTGATGGTGTCGTGT 57.694 52.632 0.00 0.00 44.91 4.49
186 187 1.303236 TGGGGCGTTCCAGTTGATG 60.303 57.895 0.00 0.00 37.22 3.07
187 188 1.002134 CTGGGGCGTTCCAGTTGAT 60.002 57.895 15.14 0.00 46.89 2.57
188 189 2.429930 CTGGGGCGTTCCAGTTGA 59.570 61.111 15.14 0.00 46.89 3.18
200 201 4.217210 TGTGGTGTTGCCCTGGGG 62.217 66.667 16.03 4.75 36.04 4.96
201 202 2.598394 CTGTGGTGTTGCCCTGGG 60.598 66.667 8.86 8.86 36.04 4.45
202 203 3.297620 GCTGTGGTGTTGCCCTGG 61.298 66.667 0.00 0.00 36.04 4.45
203 204 3.663176 CGCTGTGGTGTTGCCCTG 61.663 66.667 0.00 0.00 36.04 4.45
204 205 3.872603 TCGCTGTGGTGTTGCCCT 61.873 61.111 0.00 0.00 36.04 5.19
205 206 3.660111 GTCGCTGTGGTGTTGCCC 61.660 66.667 0.00 0.00 36.04 5.36
206 207 3.660111 GGTCGCTGTGGTGTTGCC 61.660 66.667 0.00 0.00 37.90 4.52
207 208 3.660111 GGGTCGCTGTGGTGTTGC 61.660 66.667 0.00 0.00 0.00 4.17
208 209 1.821759 TTGGGTCGCTGTGGTGTTG 60.822 57.895 0.00 0.00 0.00 3.33
209 210 1.822186 GTTGGGTCGCTGTGGTGTT 60.822 57.895 0.00 0.00 0.00 3.32
210 211 2.203153 GTTGGGTCGCTGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
211 212 3.345808 CGTTGGGTCGCTGTGGTG 61.346 66.667 0.00 0.00 0.00 4.17
212 213 4.619227 CCGTTGGGTCGCTGTGGT 62.619 66.667 0.00 0.00 0.00 4.16
230 231 2.954020 ATAGCGTGTGACCGGATGCG 62.954 60.000 9.46 0.00 0.00 4.73
231 232 0.810031 AATAGCGTGTGACCGGATGC 60.810 55.000 9.46 1.81 0.00 3.91
232 233 0.930310 CAATAGCGTGTGACCGGATG 59.070 55.000 9.46 0.00 0.00 3.51
233 234 0.179084 CCAATAGCGTGTGACCGGAT 60.179 55.000 9.46 0.00 0.00 4.18
234 235 1.216977 CCAATAGCGTGTGACCGGA 59.783 57.895 9.46 0.00 0.00 5.14
235 236 1.813753 CCCAATAGCGTGTGACCGG 60.814 63.158 0.00 0.00 0.00 5.28
236 237 1.813753 CCCCAATAGCGTGTGACCG 60.814 63.158 0.00 0.00 0.00 4.79
237 238 1.024579 CACCCCAATAGCGTGTGACC 61.025 60.000 0.00 0.00 0.00 4.02
238 239 1.644786 GCACCCCAATAGCGTGTGAC 61.645 60.000 0.00 0.00 0.00 3.67
239 240 1.376683 GCACCCCAATAGCGTGTGA 60.377 57.895 0.00 0.00 0.00 3.58
240 241 2.406616 GGCACCCCAATAGCGTGTG 61.407 63.158 0.00 0.00 0.00 3.82
241 242 2.045340 GGCACCCCAATAGCGTGT 60.045 61.111 0.00 0.00 0.00 4.49
242 243 1.376609 GAAGGCACCCCAATAGCGTG 61.377 60.000 0.00 0.00 0.00 5.34
243 244 1.077716 GAAGGCACCCCAATAGCGT 60.078 57.895 0.00 0.00 0.00 5.07
244 245 2.180204 CGAAGGCACCCCAATAGCG 61.180 63.158 0.00 0.00 0.00 4.26
245 246 2.481471 GCGAAGGCACCCCAATAGC 61.481 63.158 0.00 0.00 39.62 2.97
246 247 3.827634 GCGAAGGCACCCCAATAG 58.172 61.111 0.00 0.00 39.62 1.73
257 258 2.364317 TCTGGGGAGAGGCGAAGG 60.364 66.667 0.00 0.00 0.00 3.46
258 259 3.215245 CTCTGGGGAGAGGCGAAG 58.785 66.667 0.00 0.00 41.86 3.79
268 269 2.933032 TATTGGGGGCTCCTCTGGGG 62.933 65.000 4.32 0.00 36.20 4.96
269 270 1.385915 TATTGGGGGCTCCTCTGGG 60.386 63.158 4.32 0.00 36.20 4.45
270 271 1.422161 CCTATTGGGGGCTCCTCTGG 61.422 65.000 4.32 0.00 36.20 3.86
271 272 0.695803 ACCTATTGGGGGCTCCTCTG 60.696 60.000 4.32 0.00 40.03 3.35
272 273 0.046397 AACCTATTGGGGGCTCCTCT 59.954 55.000 4.32 0.00 40.03 3.69
273 274 0.927029 AAACCTATTGGGGGCTCCTC 59.073 55.000 4.32 0.00 40.03 3.71
274 275 0.631212 CAAACCTATTGGGGGCTCCT 59.369 55.000 4.32 0.00 40.03 3.69
275 276 0.335019 ACAAACCTATTGGGGGCTCC 59.665 55.000 0.00 0.00 40.03 4.70
276 277 1.285078 AGACAAACCTATTGGGGGCTC 59.715 52.381 0.00 0.00 40.03 4.70
277 278 1.382914 AGACAAACCTATTGGGGGCT 58.617 50.000 0.00 0.00 40.03 5.19
278 279 2.231716 AAGACAAACCTATTGGGGGC 57.768 50.000 0.00 0.00 40.03 5.80
279 280 3.260632 CCAAAAGACAAACCTATTGGGGG 59.739 47.826 0.00 0.00 40.03 5.40
280 281 4.021456 GTCCAAAAGACAAACCTATTGGGG 60.021 45.833 0.00 0.00 45.55 4.96
281 282 5.134202 GTCCAAAAGACAAACCTATTGGG 57.866 43.478 0.00 0.00 45.55 4.12
293 294 3.760684 AGATGCATTCCTGTCCAAAAGAC 59.239 43.478 0.00 0.00 46.51 3.01
294 295 4.038271 AGATGCATTCCTGTCCAAAAGA 57.962 40.909 0.00 0.00 0.00 2.52
295 296 4.021719 ACAAGATGCATTCCTGTCCAAAAG 60.022 41.667 0.00 0.00 0.00 2.27
296 297 3.896888 ACAAGATGCATTCCTGTCCAAAA 59.103 39.130 0.00 0.00 0.00 2.44
297 298 3.499338 ACAAGATGCATTCCTGTCCAAA 58.501 40.909 0.00 0.00 0.00 3.28
298 299 3.159213 ACAAGATGCATTCCTGTCCAA 57.841 42.857 0.00 0.00 0.00 3.53
299 300 2.885135 ACAAGATGCATTCCTGTCCA 57.115 45.000 0.00 0.00 0.00 4.02
300 301 4.202441 ACATACAAGATGCATTCCTGTCC 58.798 43.478 0.00 0.00 31.42 4.02
301 302 5.587844 AGAACATACAAGATGCATTCCTGTC 59.412 40.000 0.00 0.00 31.42 3.51
302 303 5.503927 AGAACATACAAGATGCATTCCTGT 58.496 37.500 0.00 7.53 33.54 4.00
303 304 5.821470 AGAGAACATACAAGATGCATTCCTG 59.179 40.000 0.00 1.16 0.00 3.86
304 305 5.999044 AGAGAACATACAAGATGCATTCCT 58.001 37.500 0.00 0.00 0.00 3.36
305 306 6.054295 AGAGAGAACATACAAGATGCATTCC 58.946 40.000 0.00 0.00 0.00 3.01
306 307 6.202570 GGAGAGAGAACATACAAGATGCATTC 59.797 42.308 0.00 0.00 0.00 2.67
307 308 6.054295 GGAGAGAGAACATACAAGATGCATT 58.946 40.000 0.00 0.00 0.00 3.56
308 309 5.366186 AGGAGAGAGAACATACAAGATGCAT 59.634 40.000 0.00 0.00 0.00 3.96
309 310 4.713814 AGGAGAGAGAACATACAAGATGCA 59.286 41.667 0.00 0.00 0.00 3.96
310 311 5.275067 AGGAGAGAGAACATACAAGATGC 57.725 43.478 0.00 0.00 0.00 3.91
311 312 6.015519 CCCTAGGAGAGAGAACATACAAGATG 60.016 46.154 11.48 0.00 0.00 2.90
312 313 6.074648 CCCTAGGAGAGAGAACATACAAGAT 58.925 44.000 11.48 0.00 0.00 2.40
313 314 5.450453 CCCTAGGAGAGAGAACATACAAGA 58.550 45.833 11.48 0.00 0.00 3.02
314 315 4.038642 GCCCTAGGAGAGAGAACATACAAG 59.961 50.000 11.48 0.00 0.00 3.16
315 316 3.961408 GCCCTAGGAGAGAGAACATACAA 59.039 47.826 11.48 0.00 0.00 2.41
316 317 3.205507 AGCCCTAGGAGAGAGAACATACA 59.794 47.826 11.48 0.00 0.00 2.29
373 374 1.001268 CAGGTCCATACGGTGATCTCG 60.001 57.143 7.33 7.33 0.00 4.04
374 375 2.032620 ACAGGTCCATACGGTGATCTC 58.967 52.381 0.00 0.00 0.00 2.75
375 376 1.757118 CACAGGTCCATACGGTGATCT 59.243 52.381 0.00 0.00 35.00 2.75
380 381 2.160721 AGATCACAGGTCCATACGGT 57.839 50.000 0.00 0.00 0.00 4.83
381 382 2.826428 CAAGATCACAGGTCCATACGG 58.174 52.381 0.00 0.00 0.00 4.02
382 383 2.159043 AGCAAGATCACAGGTCCATACG 60.159 50.000 0.00 0.00 0.00 3.06
385 386 2.356535 GGAAGCAAGATCACAGGTCCAT 60.357 50.000 0.00 0.00 0.00 3.41
389 390 1.004044 CTGGGAAGCAAGATCACAGGT 59.996 52.381 0.00 0.00 43.21 4.00
390 391 1.280133 TCTGGGAAGCAAGATCACAGG 59.720 52.381 6.00 0.00 46.19 4.00
395 396 4.277921 GGATTGAATCTGGGAAGCAAGATC 59.722 45.833 5.03 0.00 31.88 2.75
398 399 3.629087 AGGATTGAATCTGGGAAGCAAG 58.371 45.455 5.03 0.00 0.00 4.01
403 404 3.203040 GGAGGAAGGATTGAATCTGGGAA 59.797 47.826 5.03 0.00 0.00 3.97
414 415 1.760405 ACAACAGGGGAGGAAGGATT 58.240 50.000 0.00 0.00 0.00 3.01
419 420 0.765135 TCGGAACAACAGGGGAGGAA 60.765 55.000 0.00 0.00 0.00 3.36
429 430 0.806492 GCGAGGAGGATCGGAACAAC 60.806 60.000 0.00 0.00 42.94 3.32
431 432 2.423898 GGCGAGGAGGATCGGAACA 61.424 63.158 0.00 0.00 42.94 3.18
432 433 2.077821 GAGGCGAGGAGGATCGGAAC 62.078 65.000 0.00 0.00 42.94 3.62
433 434 1.828660 GAGGCGAGGAGGATCGGAA 60.829 63.158 0.00 0.00 42.94 4.30
434 435 2.203365 GAGGCGAGGAGGATCGGA 60.203 66.667 0.00 0.00 42.94 4.55
435 436 1.872197 GATGAGGCGAGGAGGATCGG 61.872 65.000 0.00 0.00 42.94 4.18
437 438 0.602562 CTGATGAGGCGAGGAGGATC 59.397 60.000 0.00 0.00 0.00 3.36
438 439 0.831288 CCTGATGAGGCGAGGAGGAT 60.831 60.000 0.00 0.00 30.52 3.24
444 445 2.801631 GGACCCCTGATGAGGCGAG 61.802 68.421 0.00 0.00 38.17 5.03
445 446 2.764128 GGACCCCTGATGAGGCGA 60.764 66.667 0.00 0.00 38.17 5.54
446 447 4.227134 CGGACCCCTGATGAGGCG 62.227 72.222 0.00 0.00 38.17 5.52
452 453 1.299976 GAAACAGCGGACCCCTGAT 59.700 57.895 13.23 0.00 34.47 2.90
455 456 3.647771 GGGAAACAGCGGACCCCT 61.648 66.667 0.00 0.00 36.65 4.79
457 458 2.046217 GAGGGAAACAGCGGACCC 60.046 66.667 9.42 9.42 42.36 4.46
458 459 2.434359 CGAGGGAAACAGCGGACC 60.434 66.667 0.00 0.00 0.00 4.46
459 460 1.737008 GACGAGGGAAACAGCGGAC 60.737 63.158 0.00 0.00 33.45 4.79
460 461 1.906824 AGACGAGGGAAACAGCGGA 60.907 57.895 0.00 0.00 33.45 5.54
465 466 1.663739 CGACCAGACGAGGGAAACA 59.336 57.895 0.00 0.00 35.09 2.83
466 467 1.737008 GCGACCAGACGAGGGAAAC 60.737 63.158 0.00 0.00 35.09 2.78
467 468 1.906824 AGCGACCAGACGAGGGAAA 60.907 57.895 0.00 0.00 35.09 3.13
468 469 2.282958 AGCGACCAGACGAGGGAA 60.283 61.111 0.00 0.00 35.09 3.97
470 471 2.820767 GAACAGCGACCAGACGAGGG 62.821 65.000 0.00 0.00 35.09 4.30
474 475 2.805353 CCGAACAGCGACCAGACG 60.805 66.667 0.00 0.00 44.57 4.18
476 477 3.691342 CCCCGAACAGCGACCAGA 61.691 66.667 0.00 0.00 44.57 3.86
479 480 3.310860 ATCACCCCGAACAGCGACC 62.311 63.158 0.00 0.00 44.57 4.79
481 482 2.577059 GATCACCCCGAACAGCGA 59.423 61.111 0.00 0.00 44.57 4.93
493 494 4.899239 CGAGCGCCCCTGGATCAC 62.899 72.222 2.29 0.00 0.00 3.06
495 496 4.162690 AACGAGCGCCCCTGGATC 62.163 66.667 2.29 0.00 0.00 3.36
496 497 4.473520 CAACGAGCGCCCCTGGAT 62.474 66.667 2.29 0.00 0.00 3.41
860 861 0.518636 CACATGAGACGTGCCCAAAG 59.481 55.000 0.00 0.00 0.00 2.77
861 862 2.627791 CACATGAGACGTGCCCAAA 58.372 52.632 0.00 0.00 0.00 3.28
870 871 3.490759 CCGCCGTGCACATGAGAC 61.491 66.667 18.64 0.00 0.00 3.36
920 921 2.162681 CCTCCGCATCCTTTTCTTTGT 58.837 47.619 0.00 0.00 0.00 2.83
926 927 2.438434 CGGCCTCCGCATCCTTTT 60.438 61.111 0.00 0.00 41.17 2.27
941 942 3.989698 AAGTGCGACGCCTCATCGG 62.990 63.158 18.69 0.00 39.99 4.18
945 946 2.661537 CACAAGTGCGACGCCTCA 60.662 61.111 18.69 0.00 0.00 3.86
947 948 2.356313 CTCACAAGTGCGACGCCT 60.356 61.111 18.69 11.17 0.00 5.52
978 979 1.424493 GCTCTTCAACCCGATCAGCG 61.424 60.000 0.00 0.00 40.47 5.18
997 998 1.880340 GACGAAGCCGCTCCATCAG 60.880 63.158 0.00 0.00 39.95 2.90
1035 1036 3.564644 CCTCATCATCAAGAATCACTGGC 59.435 47.826 0.00 0.00 0.00 4.85
1038 1039 6.464607 CCTCATCCTCATCATCAAGAATCACT 60.465 42.308 0.00 0.00 0.00 3.41
1044 1045 2.036862 CGCCTCATCCTCATCATCAAGA 59.963 50.000 0.00 0.00 0.00 3.02
1065 1066 1.072965 CAATCCAGGGCTACCAGATCC 59.927 57.143 0.00 0.00 40.13 3.36
1122 1123 1.339610 GAGGAGATCGTCTGGATGTGG 59.660 57.143 0.00 0.00 34.82 4.17
1191 1192 3.123804 CACGAAGACATTATTCCCCGAG 58.876 50.000 0.00 0.00 0.00 4.63
1192 1193 2.159014 CCACGAAGACATTATTCCCCGA 60.159 50.000 0.00 0.00 0.00 5.14
1194 1195 1.947456 GCCACGAAGACATTATTCCCC 59.053 52.381 0.00 0.00 0.00 4.81
1200 1201 4.155826 CCAAATTCTGCCACGAAGACATTA 59.844 41.667 0.00 0.00 0.00 1.90
1246 1247 0.975135 CATGGAGAGCCCTCGATCAT 59.025 55.000 0.00 0.00 40.33 2.45
1281 1282 0.307760 AAACTTTCAGAAGCACCGCG 59.692 50.000 0.00 0.00 36.29 6.46
1296 1297 6.710295 GGGGCTTAACATTTTGATCAAAAACT 59.290 34.615 31.39 21.63 42.71 2.66
1308 1309 3.542969 ACCTGAAGGGGCTTAACATTT 57.457 42.857 0.56 0.00 40.27 2.32
1312 1313 1.450025 CGAACCTGAAGGGGCTTAAC 58.550 55.000 0.56 0.00 40.27 2.01
1315 1316 1.716028 AACCGAACCTGAAGGGGCTT 61.716 55.000 0.56 0.00 40.27 4.35
1320 1321 1.641577 GATCGAACCGAACCTGAAGG 58.358 55.000 0.00 0.00 39.99 3.46
1359 1360 2.878406 CCTCGGCGGTTGATTCATAATT 59.122 45.455 7.21 0.00 0.00 1.40
1392 1393 1.903404 AAACTCCCGCCCAAGCTTG 60.903 57.895 19.93 19.93 36.60 4.01
1402 1403 1.834188 ATAGGTTTGGCAAACTCCCG 58.166 50.000 34.34 0.00 41.14 5.14
1403 1404 2.233676 CCAATAGGTTTGGCAAACTCCC 59.766 50.000 34.34 22.51 41.14 4.30
1419 1420 3.763360 CCACACTCAAAATCTGCCCAATA 59.237 43.478 0.00 0.00 0.00 1.90
1427 1428 4.963318 TCTGACTCCACACTCAAAATCT 57.037 40.909 0.00 0.00 0.00 2.40
1437 1438 1.683385 CCATCGCTATCTGACTCCACA 59.317 52.381 0.00 0.00 0.00 4.17
1451 1452 2.969238 CCCAGCATCGACCATCGC 60.969 66.667 0.00 0.00 40.21 4.58
1452 1453 2.280389 CCCCAGCATCGACCATCG 60.280 66.667 0.00 0.00 42.10 3.84
1461 1462 1.380785 CATGAAGCCACCCCAGCAT 60.381 57.895 0.00 0.00 0.00 3.79
1482 1483 4.823442 TGCACATTGATTTCAGTTCTGACT 59.177 37.500 1.72 0.00 36.25 3.41
1485 1486 5.705902 TCATGCACATTGATTTCAGTTCTG 58.294 37.500 0.00 0.00 0.00 3.02
1488 1489 4.491676 GCTCATGCACATTGATTTCAGTT 58.508 39.130 0.00 0.00 39.41 3.16
1498 1499 1.402968 GACAATCGGCTCATGCACATT 59.597 47.619 0.00 0.00 41.91 2.71
1503 1504 1.369091 AACGGACAATCGGCTCATGC 61.369 55.000 0.00 0.00 38.76 4.06
1515 1516 9.516546 AGAGATGTCATAGTAATATAACGGACA 57.483 33.333 4.26 4.26 35.69 4.02
1542 1543 8.466617 AGAAAGTCTCAGTACTCTTCAACTTA 57.533 34.615 0.00 0.00 0.00 2.24
1594 1595 2.079925 GATGCCACAGGAGAAACAGAC 58.920 52.381 0.00 0.00 0.00 3.51
1605 1606 2.866523 AATGCCCCAGGATGCCACAG 62.867 60.000 0.00 0.00 31.97 3.66
1617 1618 0.324645 ACATCACCAAGGAATGCCCC 60.325 55.000 0.00 0.00 34.66 5.80
1628 1629 0.252696 AGGAGTAGGGCACATCACCA 60.253 55.000 0.00 0.00 0.00 4.17
1647 1648 0.321564 CGTTCTCATCCCACAAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
1653 1654 0.608640 AGTCACCGTTCTCATCCCAC 59.391 55.000 0.00 0.00 0.00 4.61
1654 1655 1.348064 AAGTCACCGTTCTCATCCCA 58.652 50.000 0.00 0.00 0.00 4.37
1672 1673 2.741878 GCTTCTTCGCAGCATAGGGTAA 60.742 50.000 0.00 0.00 37.22 2.85
1677 1678 3.183976 CACATAGCTTCTTCGCAGCATAG 59.816 47.826 0.00 0.00 39.99 2.23
1686 1687 6.511444 GCTCATCATTGACACATAGCTTCTTC 60.511 42.308 0.00 0.00 0.00 2.87
1695 1696 4.193865 TCGAATGCTCATCATTGACACAT 58.806 39.130 0.00 0.00 44.95 3.21
1725 1726 2.840102 CTAGACCTGGAGCCCCCG 60.840 72.222 0.00 0.00 37.93 5.73
1731 1732 2.496817 GCCGCACTAGACCTGGAG 59.503 66.667 0.00 0.00 0.00 3.86
1734 1735 1.608717 AAGAGGCCGCACTAGACCTG 61.609 60.000 9.88 0.00 30.95 4.00
1744 1745 1.807573 CAGACGAAGAAGAGGCCGC 60.808 63.158 0.00 0.00 0.00 6.53
1775 1776 1.670083 GAGTTACCAAAGGCGCGGT 60.670 57.895 8.83 9.68 39.41 5.68
1776 1777 2.396157 GGAGTTACCAAAGGCGCGG 61.396 63.158 8.83 0.00 38.79 6.46
1777 1778 1.669760 TGGAGTTACCAAAGGCGCG 60.670 57.895 0.00 0.00 46.75 6.86
1794 1795 2.153366 AACCCGCAGCTTCAAATTTG 57.847 45.000 12.15 12.15 0.00 2.32
1795 1796 3.258123 ACATAACCCGCAGCTTCAAATTT 59.742 39.130 0.00 0.00 0.00 1.82
1797 1798 2.423538 GACATAACCCGCAGCTTCAAAT 59.576 45.455 0.00 0.00 0.00 2.32
1799 1800 1.271108 TGACATAACCCGCAGCTTCAA 60.271 47.619 0.00 0.00 0.00 2.69
1802 1803 1.165270 GTTGACATAACCCGCAGCTT 58.835 50.000 0.00 0.00 0.00 3.74
1806 1807 2.301870 AGAAGAGTTGACATAACCCGCA 59.698 45.455 0.00 0.00 0.00 5.69
1807 1808 2.673368 CAGAAGAGTTGACATAACCCGC 59.327 50.000 0.00 0.00 0.00 6.13
1809 1810 3.010420 GGCAGAAGAGTTGACATAACCC 58.990 50.000 0.00 0.00 0.00 4.11
1812 1813 2.354704 CGGGGCAGAAGAGTTGACATAA 60.355 50.000 0.00 0.00 0.00 1.90
1813 1814 1.207089 CGGGGCAGAAGAGTTGACATA 59.793 52.381 0.00 0.00 0.00 2.29
1815 1816 1.371183 CGGGGCAGAAGAGTTGACA 59.629 57.895 0.00 0.00 0.00 3.58
1817 1818 0.909610 ATCCGGGGCAGAAGAGTTGA 60.910 55.000 0.00 0.00 0.00 3.18
1818 1819 0.745845 CATCCGGGGCAGAAGAGTTG 60.746 60.000 0.00 0.00 0.00 3.16
1819 1820 1.604378 CATCCGGGGCAGAAGAGTT 59.396 57.895 0.00 0.00 0.00 3.01
1821 1822 1.048724 TACCATCCGGGGCAGAAGAG 61.049 60.000 0.00 0.00 42.91 2.85
1824 1825 1.705002 CCATACCATCCGGGGCAGAA 61.705 60.000 0.00 0.00 42.91 3.02
1825 1826 2.146724 CCATACCATCCGGGGCAGA 61.147 63.158 0.00 0.00 42.91 4.26
1826 1827 1.492133 ATCCATACCATCCGGGGCAG 61.492 60.000 0.00 0.00 42.91 4.85
1830 1831 1.066143 GCAGTATCCATACCATCCGGG 60.066 57.143 0.00 0.00 44.81 5.73
1831 1832 1.902508 AGCAGTATCCATACCATCCGG 59.097 52.381 0.00 0.00 33.79 5.14
1833 1834 2.639839 ACCAGCAGTATCCATACCATCC 59.360 50.000 0.00 0.00 33.79 3.51
1846 1847 1.143684 AGAAACATCACCACCAGCAGT 59.856 47.619 0.00 0.00 0.00 4.40
1853 1854 1.523758 AGGCGAAGAAACATCACCAC 58.476 50.000 0.00 0.00 0.00 4.16
1854 1855 3.055458 TGATAGGCGAAGAAACATCACCA 60.055 43.478 0.00 0.00 0.00 4.17
1860 1861 5.336372 CCCAAATTTGATAGGCGAAGAAACA 60.336 40.000 19.86 0.00 0.00 2.83
1866 1867 2.757868 CACCCCAAATTTGATAGGCGAA 59.242 45.455 19.86 0.00 0.00 4.70
1869 1870 1.138859 GCCACCCCAAATTTGATAGGC 59.861 52.381 19.86 20.06 0.00 3.93
1879 1880 3.551496 CTCGAGCAGCCACCCCAAA 62.551 63.158 0.00 0.00 0.00 3.28
1880 1881 4.020617 CTCGAGCAGCCACCCCAA 62.021 66.667 0.00 0.00 0.00 4.12
1899 1901 3.726517 CTGAAAGTGCGGCCACGG 61.727 66.667 2.24 0.00 46.62 4.94
1905 1907 2.742372 CGACCCCTGAAAGTGCGG 60.742 66.667 0.00 0.00 0.00 5.69
1908 1910 2.742372 CCGCGACCCCTGAAAGTG 60.742 66.667 8.23 0.00 0.00 3.16
1909 1911 4.699522 GCCGCGACCCCTGAAAGT 62.700 66.667 8.23 0.00 0.00 2.66
1951 1953 2.656422 GCGTGGATGAAAACAATTCACG 59.344 45.455 11.86 11.86 45.93 4.35
1963 1965 1.651987 GATTTCTTCCGCGTGGATGA 58.348 50.000 25.09 25.09 45.91 2.92
1965 1967 3.080647 GGATTTCTTCCGCGTGGAT 57.919 52.632 20.33 2.48 45.91 3.41
1966 1968 4.609995 GGATTTCTTCCGCGTGGA 57.390 55.556 15.21 15.21 44.61 4.02
1992 1994 2.497675 TCCTGATTTCCTCTTCTGACCG 59.502 50.000 0.00 0.00 0.00 4.79
1995 1997 5.006386 GCTTTTCCTGATTTCCTCTTCTGA 58.994 41.667 0.00 0.00 0.00 3.27
2013 2015 3.075134 AGGGAGAAGATGTGGAAGCTTTT 59.925 43.478 0.00 0.00 0.00 2.27
2020 2022 2.928036 TGAGAGGGAGAAGATGTGGA 57.072 50.000 0.00 0.00 0.00 4.02
2022 2024 3.197333 ACACATGAGAGGGAGAAGATGTG 59.803 47.826 0.00 0.00 44.02 3.21
2026 2028 2.568956 CCAACACATGAGAGGGAGAAGA 59.431 50.000 0.00 0.00 0.00 2.87
2028 2030 2.568956 CTCCAACACATGAGAGGGAGAA 59.431 50.000 21.07 0.00 43.58 2.87
2034 2036 2.093764 GTCCTCCTCCAACACATGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
2035 2037 1.902508 GTCCTCCTCCAACACATGAGA 59.097 52.381 0.00 0.00 0.00 3.27
2038 2040 2.566833 TTGTCCTCCTCCAACACATG 57.433 50.000 0.00 0.00 0.00 3.21
2039 2041 3.054361 GGTATTGTCCTCCTCCAACACAT 60.054 47.826 0.00 0.00 0.00 3.21
2042 2044 1.913419 GGGTATTGTCCTCCTCCAACA 59.087 52.381 0.00 0.00 0.00 3.33
2043 2045 2.197465 AGGGTATTGTCCTCCTCCAAC 58.803 52.381 0.00 0.00 0.00 3.77
2044 2046 2.576191 CAAGGGTATTGTCCTCCTCCAA 59.424 50.000 0.00 0.00 32.59 3.53
2045 2047 2.196595 CAAGGGTATTGTCCTCCTCCA 58.803 52.381 0.00 0.00 32.59 3.86
2046 2048 1.134068 GCAAGGGTATTGTCCTCCTCC 60.134 57.143 0.00 0.00 32.59 4.30
2048 2050 1.840635 GAGCAAGGGTATTGTCCTCCT 59.159 52.381 0.00 0.00 32.59 3.69
2059 2067 1.062488 ACTGGAACCAGAGCAAGGGT 61.062 55.000 25.03 0.49 46.30 4.34
2061 2069 1.339151 GGTACTGGAACCAGAGCAAGG 60.339 57.143 25.03 0.58 46.30 3.61
2074 2082 2.284405 AGGTCCACCCGGTACTGG 60.284 66.667 14.38 14.38 39.22 4.00
2076 2084 0.765519 AAACAGGTCCACCCGGTACT 60.766 55.000 0.00 0.00 41.17 2.73
2079 2087 1.152839 CAAAACAGGTCCACCCGGT 60.153 57.895 0.00 0.00 44.23 5.28
2080 2088 1.152839 ACAAAACAGGTCCACCCGG 60.153 57.895 0.00 0.00 38.74 5.73
2081 2089 0.750182 ACACAAAACAGGTCCACCCG 60.750 55.000 0.00 0.00 38.74 5.28
2084 2092 2.543653 GCATGACACAAAACAGGTCCAC 60.544 50.000 0.00 0.00 0.00 4.02
2089 2097 2.030540 CCTCAGCATGACACAAAACAGG 60.031 50.000 0.00 0.00 42.56 4.00
2090 2098 2.606308 GCCTCAGCATGACACAAAACAG 60.606 50.000 0.00 0.00 42.56 3.16
2094 2102 1.202794 TGAGCCTCAGCATGACACAAA 60.203 47.619 0.00 0.00 42.56 2.83
2095 2103 0.397564 TGAGCCTCAGCATGACACAA 59.602 50.000 0.00 0.00 42.56 3.33
2097 2105 1.085091 CTTGAGCCTCAGCATGACAC 58.915 55.000 0.00 0.00 42.56 3.67
2099 2107 1.338484 TGTCTTGAGCCTCAGCATGAC 60.338 52.381 0.00 3.79 42.56 3.06
2101 2109 1.085091 GTGTCTTGAGCCTCAGCATG 58.915 55.000 0.00 0.00 43.56 4.06
2103 2111 1.372683 GGTGTCTTGAGCCTCAGCA 59.627 57.895 0.00 0.00 43.56 4.41
2105 2113 0.389166 GTCGGTGTCTTGAGCCTCAG 60.389 60.000 0.00 0.00 0.00 3.35
2111 2119 2.420722 GACTCTAGGTCGGTGTCTTGAG 59.579 54.545 0.00 0.00 38.30 3.02
2115 2123 0.697079 TGGACTCTAGGTCGGTGTCT 59.303 55.000 5.59 0.00 45.35 3.41
2125 2133 5.047847 TCGTTGTTTCTTGTTGGACTCTAG 58.952 41.667 0.00 0.00 0.00 2.43
2127 2135 3.869065 TCGTTGTTTCTTGTTGGACTCT 58.131 40.909 0.00 0.00 0.00 3.24
2148 2156 2.348666 CGCCGATCGAAGTTCTGAAATT 59.651 45.455 18.66 2.35 41.67 1.82
2155 2163 0.940047 GGATCCGCCGATCGAAGTTC 60.940 60.000 18.66 8.80 45.16 3.01
2157 2165 2.728817 GGATCCGCCGATCGAAGT 59.271 61.111 18.66 0.00 45.16 3.01
2295 2303 0.787084 TCAGACAGGAAGAGGAGGGT 59.213 55.000 0.00 0.00 0.00 4.34
2357 2365 1.905354 GCAGCCAGAAAAGCCCAGT 60.905 57.895 0.00 0.00 0.00 4.00
2384 2392 1.341187 CCTCCGAGACCCTCACTACTT 60.341 57.143 0.00 0.00 0.00 2.24
2400 2408 2.104963 AGAACAAAGTCAGACCACCTCC 59.895 50.000 0.00 0.00 0.00 4.30
2402 2410 4.039366 GTCTAGAACAAAGTCAGACCACCT 59.961 45.833 0.00 0.00 31.47 4.00
2412 2420 3.999663 GCAGCTGATGTCTAGAACAAAGT 59.000 43.478 20.43 0.00 42.37 2.66
2422 2430 1.857965 TACCTCAGCAGCTGATGTCT 58.142 50.000 30.05 16.00 39.92 3.41
2465 2473 5.689383 ACTTAACAAAAGTGTCGATGCAT 57.311 34.783 0.00 0.00 36.80 3.96
2471 2479 7.113404 CCATCATTGAACTTAACAAAAGTGTCG 59.887 37.037 0.00 0.00 36.80 4.35
2479 2487 6.549364 AGAACCACCATCATTGAACTTAACAA 59.451 34.615 0.00 0.00 0.00 2.83
2487 2495 2.562298 GCCAAGAACCACCATCATTGAA 59.438 45.455 0.00 0.00 0.00 2.69
2500 2508 1.660333 CGAAAGAAGCACGCCAAGAAC 60.660 52.381 0.00 0.00 0.00 3.01
2501 2509 0.586319 CGAAAGAAGCACGCCAAGAA 59.414 50.000 0.00 0.00 0.00 2.52
2502 2510 0.531974 ACGAAAGAAGCACGCCAAGA 60.532 50.000 0.00 0.00 0.00 3.02
2740 2765 3.006112 TGTTGCACCAAGTAAACCTCA 57.994 42.857 0.00 0.00 0.00 3.86
2915 2940 3.194542 GGACAGGAGATATCCGATTCTGG 59.805 52.174 0.00 0.00 34.28 3.86
2994 3019 2.508526 GTCAGACCAAGCTTGTTCCAT 58.491 47.619 24.35 2.79 0.00 3.41
3077 3102 3.181461 CCTCTTTGCTCCAGGATCGTAAT 60.181 47.826 0.00 0.00 0.00 1.89
3161 3186 1.965754 GAGCAGGAGTTGGAGGCGAT 61.966 60.000 0.00 0.00 0.00 4.58
3185 3210 4.189188 ATCGACCGTTCCTCCGCG 62.189 66.667 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.