Multiple sequence alignment - TraesCS1B01G472700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G472700 chr1B 100.000 2667 0 0 1 2667 680990162 680992828 0.000000e+00 4926.0
1 TraesCS1B01G472700 chr1B 86.716 670 36 20 1273 1890 289694806 289695474 0.000000e+00 695.0
2 TraesCS1B01G472700 chr1B 92.625 339 20 4 2130 2468 289696010 289696343 1.440000e-132 483.0
3 TraesCS1B01G472700 chr1B 90.535 243 15 2 2422 2664 539830559 539830793 5.540000e-82 315.0
4 TraesCS1B01G472700 chr1B 100.000 35 0 0 363 397 593787666 593787632 6.160000e-07 65.8
5 TraesCS1B01G472700 chr5D 94.551 1670 52 14 1 1637 510552716 510554379 0.000000e+00 2543.0
6 TraesCS1B01G472700 chr5D 93.941 1667 62 16 4 1637 445025939 445024279 0.000000e+00 2483.0
7 TraesCS1B01G472700 chr5D 84.701 1170 90 31 964 2052 127939116 127937955 0.000000e+00 1086.0
8 TraesCS1B01G472700 chr5D 94.974 577 21 1 2091 2667 510559734 510560302 0.000000e+00 898.0
9 TraesCS1B01G472700 chr5D 94.627 577 23 1 2091 2667 445019055 445018487 0.000000e+00 887.0
10 TraesCS1B01G472700 chr5D 89.444 701 43 6 964 1637 431987999 431988695 0.000000e+00 856.0
11 TraesCS1B01G472700 chr5D 89.016 701 45 8 964 1637 27284295 27284990 0.000000e+00 839.0
12 TraesCS1B01G472700 chr5D 96.667 420 14 0 1633 2052 510554402 510554821 0.000000e+00 699.0
13 TraesCS1B01G472700 chr5D 96.437 421 15 0 1633 2053 445024256 445023836 0.000000e+00 695.0
14 TraesCS1B01G472700 chr5D 94.570 221 10 2 1633 1852 27285013 27285232 9.140000e-90 340.0
15 TraesCS1B01G472700 chr5D 94.091 220 12 1 1633 1852 431988718 431988936 1.530000e-87 333.0
16 TraesCS1B01G472700 chr5D 90.608 181 16 1 9 189 27280282 27280461 3.430000e-59 239.0
17 TraesCS1B01G472700 chr7D 94.291 1664 62 14 4 1637 574100687 574099027 0.000000e+00 2516.0
18 TraesCS1B01G472700 chr7D 83.669 447 46 11 1633 2052 621798402 621798848 1.920000e-106 396.0
19 TraesCS1B01G472700 chr7D 83.036 448 47 13 1633 2052 340175233 340175679 1.940000e-101 379.0
20 TraesCS1B01G472700 chr7D 89.583 48 4 1 363 409 449502656 449502609 2.870000e-05 60.2
21 TraesCS1B01G472700 chr7D 100.000 29 0 0 2047 2075 535964011 535963983 1.000000e-03 54.7
22 TraesCS1B01G472700 chr2B 90.888 1273 85 12 390 1635 788173221 788174489 0.000000e+00 1679.0
23 TraesCS1B01G472700 chr2B 89.736 341 24 6 2130 2468 100090675 100090344 2.450000e-115 425.0
24 TraesCS1B01G472700 chr2B 83.221 447 48 12 1633 2052 788174514 788174960 4.160000e-103 385.0
25 TraesCS1B01G472700 chr2B 88.889 189 20 1 9 197 134340850 134341037 5.740000e-57 231.0
26 TraesCS1B01G472700 chr5A 90.696 1279 82 14 390 1635 13088768 13087494 0.000000e+00 1668.0
27 TraesCS1B01G472700 chr5A 93.197 147 8 2 2315 2460 470943847 470943992 5.780000e-52 215.0
28 TraesCS1B01G472700 chr5A 84.810 158 16 3 2510 2667 470943998 470944147 4.600000e-33 152.0
29 TraesCS1B01G472700 chr7A 92.539 1166 77 5 390 1548 28948141 28946979 0.000000e+00 1663.0
30 TraesCS1B01G472700 chr7A 92.453 1166 76 7 390 1548 28836972 28835812 0.000000e+00 1655.0
31 TraesCS1B01G472700 chr7A 92.367 1166 78 5 390 1548 28878149 28876988 0.000000e+00 1650.0
32 TraesCS1B01G472700 chr7A 92.367 1166 77 6 390 1548 29000553 28999393 0.000000e+00 1650.0
33 TraesCS1B01G472700 chr7A 94.454 577 24 1 2091 2667 576789603 576789035 0.000000e+00 881.0
34 TraesCS1B01G472700 chr7A 94.107 577 26 1 2091 2667 658275431 658275999 0.000000e+00 870.0
35 TraesCS1B01G472700 chr7A 94.545 220 12 0 1633 1852 576791678 576791459 9.140000e-90 340.0
36 TraesCS1B01G472700 chr7A 94.545 220 12 0 1633 1852 658273355 658273574 9.140000e-90 340.0
37 TraesCS1B01G472700 chr7A 93.119 218 12 3 2130 2345 41462823 41462607 1.540000e-82 316.0
38 TraesCS1B01G472700 chr7A 93.119 218 12 3 2130 2345 617600475 617600691 1.540000e-82 316.0
39 TraesCS1B01G472700 chr7A 89.241 158 9 3 2510 2667 41462546 41462397 9.740000e-45 191.0
40 TraesCS1B01G472700 chr7A 89.241 158 9 3 2510 2667 617600752 617600901 9.740000e-45 191.0
41 TraesCS1B01G472700 chr1D 84.543 1171 90 31 964 2052 415597446 415598607 0.000000e+00 1075.0
42 TraesCS1B01G472700 chr1D 84.234 444 46 11 1633 2052 62896208 62896651 6.870000e-111 411.0
43 TraesCS1B01G472700 chr7B 90.043 703 36 4 966 1637 228802538 228803237 0.000000e+00 880.0
44 TraesCS1B01G472700 chr7B 91.496 341 20 5 2130 2468 593327970 593327637 6.730000e-126 460.0
45 TraesCS1B01G472700 chr7B 94.545 220 12 0 1633 1852 228803260 228803479 9.140000e-90 340.0
46 TraesCS1B01G472700 chr7B 87.342 158 12 2 2510 2667 593327639 593327490 9.810000e-40 174.0
47 TraesCS1B01G472700 chr2A 93.761 577 28 1 2091 2667 764886250 764886818 0.000000e+00 859.0
48 TraesCS1B01G472700 chr2A 87.161 701 46 8 964 1637 764883489 764884172 0.000000e+00 756.0
49 TraesCS1B01G472700 chr6D 81.988 855 69 22 1273 2052 13477876 13478720 0.000000e+00 647.0
50 TraesCS1B01G472700 chr6D 88.205 195 19 2 9 200 440672892 440673085 2.070000e-56 230.0
51 TraesCS1B01G472700 chr6D 85.938 192 23 2 9 200 137153122 137152935 4.500000e-48 202.0
52 TraesCS1B01G472700 chr6D 82.301 113 19 1 2446 2558 18774366 18774477 2.190000e-16 97.1
53 TraesCS1B01G472700 chr3D 83.669 447 46 12 1633 2052 583597363 583597809 1.920000e-106 396.0
54 TraesCS1B01G472700 chr3D 97.368 38 1 0 2091 2128 399738636 399738673 6.160000e-07 65.8
55 TraesCS1B01G472700 chr3B 86.066 366 21 8 2127 2468 775656458 775656099 1.510000e-97 366.0
56 TraesCS1B01G472700 chr2D 95.000 220 11 0 1633 1852 606089831 606089612 1.970000e-91 346.0
57 TraesCS1B01G472700 chr2D 87.500 192 23 1 9 200 606091876 606091686 1.240000e-53 220.0
58 TraesCS1B01G472700 chr2D 87.429 175 19 2 9 183 29097227 29097056 5.820000e-47 198.0
59 TraesCS1B01G472700 chr2D 94.444 90 5 0 1548 1637 606089943 606089854 3.580000e-29 139.0
60 TraesCS1B01G472700 chr3A 91.781 146 12 0 2315 2460 662571413 662571268 1.250000e-48 204.0
61 TraesCS1B01G472700 chr3A 84.810 158 16 3 2510 2667 662571262 662571113 4.600000e-33 152.0
62 TraesCS1B01G472700 chr3A 89.583 48 4 1 363 409 703815075 703815122 2.870000e-05 60.2
63 TraesCS1B01G472700 chr6A 83.621 116 18 1 2444 2559 5074545 5074431 1.010000e-19 108.0
64 TraesCS1B01G472700 chrUn 89.583 48 4 1 363 409 314368426 314368473 2.870000e-05 60.2
65 TraesCS1B01G472700 chrUn 89.583 48 4 1 363 409 344423068 344423115 2.870000e-05 60.2
66 TraesCS1B01G472700 chrUn 89.583 48 4 1 363 409 455430595 455430642 2.870000e-05 60.2
67 TraesCS1B01G472700 chr4B 100.000 28 0 0 2048 2075 667270807 667270834 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G472700 chr1B 680990162 680992828 2666 False 4926.000000 4926 100.000000 1 2667 1 chr1B.!!$F2 2666
1 TraesCS1B01G472700 chr1B 289694806 289696343 1537 False 589.000000 695 89.670500 1273 2468 2 chr1B.!!$F3 1195
2 TraesCS1B01G472700 chr5D 510552716 510554821 2105 False 1621.000000 2543 95.609000 1 2052 2 chr5D.!!$F4 2051
3 TraesCS1B01G472700 chr5D 445023836 445025939 2103 True 1589.000000 2483 95.189000 4 2053 2 chr5D.!!$R3 2049
4 TraesCS1B01G472700 chr5D 127937955 127939116 1161 True 1086.000000 1086 84.701000 964 2052 1 chr5D.!!$R1 1088
5 TraesCS1B01G472700 chr5D 510559734 510560302 568 False 898.000000 898 94.974000 2091 2667 1 chr5D.!!$F1 576
6 TraesCS1B01G472700 chr5D 445018487 445019055 568 True 887.000000 887 94.627000 2091 2667 1 chr5D.!!$R2 576
7 TraesCS1B01G472700 chr5D 431987999 431988936 937 False 594.500000 856 91.767500 964 1852 2 chr5D.!!$F3 888
8 TraesCS1B01G472700 chr5D 27280282 27285232 4950 False 472.666667 839 91.398000 9 1852 3 chr5D.!!$F2 1843
9 TraesCS1B01G472700 chr7D 574099027 574100687 1660 True 2516.000000 2516 94.291000 4 1637 1 chr7D.!!$R3 1633
10 TraesCS1B01G472700 chr2B 788173221 788174960 1739 False 1032.000000 1679 87.054500 390 2052 2 chr2B.!!$F2 1662
11 TraesCS1B01G472700 chr5A 13087494 13088768 1274 True 1668.000000 1668 90.696000 390 1635 1 chr5A.!!$R1 1245
12 TraesCS1B01G472700 chr7A 28946979 28948141 1162 True 1663.000000 1663 92.539000 390 1548 1 chr7A.!!$R3 1158
13 TraesCS1B01G472700 chr7A 28835812 28836972 1160 True 1655.000000 1655 92.453000 390 1548 1 chr7A.!!$R1 1158
14 TraesCS1B01G472700 chr7A 28876988 28878149 1161 True 1650.000000 1650 92.367000 390 1548 1 chr7A.!!$R2 1158
15 TraesCS1B01G472700 chr7A 28999393 29000553 1160 True 1650.000000 1650 92.367000 390 1548 1 chr7A.!!$R4 1158
16 TraesCS1B01G472700 chr7A 576789035 576791678 2643 True 610.500000 881 94.499500 1633 2667 2 chr7A.!!$R6 1034
17 TraesCS1B01G472700 chr7A 658273355 658275999 2644 False 605.000000 870 94.326000 1633 2667 2 chr7A.!!$F2 1034
18 TraesCS1B01G472700 chr1D 415597446 415598607 1161 False 1075.000000 1075 84.543000 964 2052 1 chr1D.!!$F2 1088
19 TraesCS1B01G472700 chr7B 228802538 228803479 941 False 610.000000 880 92.294000 966 1852 2 chr7B.!!$F1 886
20 TraesCS1B01G472700 chr2A 764883489 764886818 3329 False 807.500000 859 90.461000 964 2667 2 chr2A.!!$F1 1703
21 TraesCS1B01G472700 chr6D 13477876 13478720 844 False 647.000000 647 81.988000 1273 2052 1 chr6D.!!$F1 779
22 TraesCS1B01G472700 chr2D 606089612 606091876 2264 True 235.000000 346 92.314667 9 1852 3 chr2D.!!$R2 1843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 424 0.459585 TTCTCATACAGCGCGGGTTC 60.460 55.0 13.26 0.00 0.00 3.62 F
940 2571 2.231215 AGGTGATAGTTGCTGATCGC 57.769 50.0 3.07 3.07 39.77 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 4284 0.737715 GAGCACGTCGCAATCTTCCT 60.738 55.0 11.58 0.00 46.13 3.36 R
2079 5883 0.889994 GGACTGATTTGCATGCCACA 59.110 50.0 16.68 8.92 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 3.023118 CTAGATCGAGCGCACGGA 58.977 61.111 26.30 13.78 0.00 4.69
191 192 2.896039 AGAGGAAGAGCAACCTACACT 58.104 47.619 0.00 0.00 36.57 3.55
240 400 4.467084 TTGACCGCCGAGGCATCC 62.467 66.667 15.03 2.59 46.52 3.51
264 424 0.459585 TTCTCATACAGCGCGGGTTC 60.460 55.000 13.26 0.00 0.00 3.62
895 1948 2.638480 AACAACTCACAAGCTGGCTA 57.362 45.000 0.00 0.00 0.00 3.93
911 2282 6.889198 AGCTGGCTAAGTTTCTTATACATGA 58.111 36.000 0.00 0.00 0.00 3.07
930 2301 7.682787 ACATGAATTTCTCCTAGGTGATAGT 57.317 36.000 14.15 8.96 0.00 2.12
940 2571 2.231215 AGGTGATAGTTGCTGATCGC 57.769 50.000 3.07 3.07 39.77 4.58
1076 4284 4.069232 CCCGACCTCGCTGCTCAA 62.069 66.667 0.00 0.00 38.18 3.02
1152 4360 3.849563 TCTTCTTTTTCCTCGTCCCAA 57.150 42.857 0.00 0.00 0.00 4.12
1203 4412 5.993106 ACTGCTCTGAAACTCAGTTAAAC 57.007 39.130 0.00 0.00 44.58 2.01
1217 4426 5.525484 TCAGTTAAACTATCCTCCTGGCTA 58.475 41.667 0.00 0.00 0.00 3.93
1223 4432 9.794719 GTTAAACTATCCTCCTGGCTATTATTT 57.205 33.333 0.00 0.00 0.00 1.40
1225 4434 8.926092 AAACTATCCTCCTGGCTATTATTTTC 57.074 34.615 0.00 0.00 0.00 2.29
1311 4524 3.368635 GGACAATGCTGATGCCATCAAAA 60.369 43.478 9.00 0.13 39.11 2.44
1494 4711 0.978146 AAGGGCGTGCTGATCCTACT 60.978 55.000 0.00 0.00 0.00 2.57
1563 4855 1.339151 GGTGCGAGGAGAAGGTGAATT 60.339 52.381 0.00 0.00 0.00 2.17
1674 4993 9.595823 CAGAATTGGCTCAATTTGAAAGAATAT 57.404 29.630 12.51 0.00 43.05 1.28
1829 5183 2.517959 TGCCAATGAGCAAGTTTAGCT 58.482 42.857 0.00 0.00 46.82 3.32
1968 5702 1.901591 ACAGAGTTGGGCACAGATTG 58.098 50.000 0.00 0.00 0.00 2.67
2041 5845 1.826385 AGCTGCAATGTACCAACTCC 58.174 50.000 1.02 0.00 0.00 3.85
2053 5857 3.672293 AACTCCTGTTGGCATGCG 58.328 55.556 12.44 0.00 34.71 4.73
2054 5858 1.228245 AACTCCTGTTGGCATGCGT 60.228 52.632 12.44 0.00 34.71 5.24
2055 5859 0.036164 AACTCCTGTTGGCATGCGTA 59.964 50.000 12.44 0.00 34.71 4.42
2056 5860 0.391661 ACTCCTGTTGGCATGCGTAG 60.392 55.000 12.44 6.86 0.00 3.51
2057 5861 0.108186 CTCCTGTTGGCATGCGTAGA 60.108 55.000 12.44 0.00 0.00 2.59
2058 5862 0.391130 TCCTGTTGGCATGCGTAGAC 60.391 55.000 12.44 7.91 0.00 2.59
2059 5863 1.695893 CCTGTTGGCATGCGTAGACG 61.696 60.000 12.44 0.00 43.27 4.18
2060 5864 1.005512 TGTTGGCATGCGTAGACGT 60.006 52.632 12.44 0.00 42.22 4.34
2061 5865 1.011968 TGTTGGCATGCGTAGACGTC 61.012 55.000 12.44 7.70 42.22 4.34
2064 5868 2.202570 GCATGCGTAGACGTCCGT 60.203 61.111 13.01 0.00 42.22 4.69
2073 5877 3.692406 GACGTCCGTCTTGGGGCT 61.692 66.667 12.31 0.00 41.57 5.19
2074 5878 3.644399 GACGTCCGTCTTGGGGCTC 62.644 68.421 12.31 0.00 41.57 4.70
2076 5880 3.692406 GTCCGTCTTGGGGCTCGT 61.692 66.667 0.00 0.00 38.76 4.18
2077 5881 2.036098 TCCGTCTTGGGGCTCGTA 59.964 61.111 0.00 0.00 38.76 3.43
2078 5882 2.050350 TCCGTCTTGGGGCTCGTAG 61.050 63.158 0.00 0.00 38.76 3.51
2079 5883 2.348888 CCGTCTTGGGGCTCGTAGT 61.349 63.158 0.00 0.00 0.00 2.73
2081 5885 1.874345 CGTCTTGGGGCTCGTAGTGT 61.874 60.000 0.00 0.00 0.00 3.55
2083 5887 1.079127 CTTGGGGCTCGTAGTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
2086 5890 2.584608 GGGCTCGTAGTGTGGCAT 59.415 61.111 0.00 0.00 38.30 4.40
2088 5892 2.464459 GGCTCGTAGTGTGGCATGC 61.464 63.158 9.90 9.90 36.70 4.06
2089 5893 1.741401 GCTCGTAGTGTGGCATGCA 60.741 57.895 21.36 2.54 0.00 3.96
2103 7317 1.202222 GCATGCAAATCAGTCCTTCCG 60.202 52.381 14.21 0.00 0.00 4.30
2122 7336 1.134220 CGGTTAAGCATTGGGGAGCTA 60.134 52.381 5.38 0.00 40.90 3.32
2128 7342 1.707427 AGCATTGGGGAGCTAATAGGG 59.293 52.381 0.00 0.00 39.78 3.53
2199 7413 8.184304 AGCTAACATTTTGGGTACAATTTGTA 57.816 30.769 5.14 5.14 36.29 2.41
2240 7454 7.423199 CATCGTATAGTTGTACATGTACCTGT 58.577 38.462 28.67 20.18 35.26 4.00
2558 7772 6.583050 CAGAAGTAGTAGAGTAAGCACAACAC 59.417 42.308 0.00 0.00 0.00 3.32
2559 7773 6.264744 AGAAGTAGTAGAGTAAGCACAACACA 59.735 38.462 0.00 0.00 0.00 3.72
2560 7774 6.401047 AGTAGTAGAGTAAGCACAACACAA 57.599 37.500 0.00 0.00 0.00 3.33
2561 7775 6.994221 AGTAGTAGAGTAAGCACAACACAAT 58.006 36.000 0.00 0.00 0.00 2.71
2562 7776 6.868864 AGTAGTAGAGTAAGCACAACACAATG 59.131 38.462 0.00 0.00 0.00 2.82
2563 7777 4.997395 AGTAGAGTAAGCACAACACAATGG 59.003 41.667 0.00 0.00 0.00 3.16
2564 7778 4.085357 AGAGTAAGCACAACACAATGGA 57.915 40.909 0.00 0.00 0.00 3.41
2565 7779 4.067896 AGAGTAAGCACAACACAATGGAG 58.932 43.478 0.00 0.00 0.00 3.86
2623 7837 7.365497 TCTTCATAGAATGCAGACCTTGATA 57.635 36.000 0.00 0.00 27.59 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 4.263462 TGCATTAGATGTTTGTCCTCCAGT 60.263 41.667 0.00 0.00 0.00 4.00
150 151 1.677552 CTTTGGACGGCTACCACCT 59.322 57.895 0.00 0.00 37.13 4.00
240 400 1.600663 CCGCGCTGTATGAGAACTAGG 60.601 57.143 5.56 0.00 0.00 3.02
285 445 2.417516 CACCTATCGCTGGGACGG 59.582 66.667 0.00 3.56 38.10 4.79
444 686 6.935167 TGCATAATCAGAAGAACAGTGTCTA 58.065 36.000 0.00 0.00 0.00 2.59
671 1264 9.784531 TTCATTCACTAGAAGAAATCAAAGTCT 57.215 29.630 0.00 0.00 37.14 3.24
911 2282 6.156949 TCAGCAACTATCACCTAGGAGAAATT 59.843 38.462 17.98 6.47 0.00 1.82
1076 4284 0.737715 GAGCACGTCGCAATCTTCCT 60.738 55.000 11.58 0.00 46.13 3.36
1152 4360 6.857848 TGATAGAAGATAGGATGAGGTGAGT 58.142 40.000 0.00 0.00 0.00 3.41
1192 4401 4.162509 GCCAGGAGGATAGTTTAACTGAGT 59.837 45.833 8.00 0.00 36.89 3.41
1203 4412 9.579932 AAAAGAAAATAATAGCCAGGAGGATAG 57.420 33.333 0.00 0.00 39.55 2.08
1311 4524 3.441572 GCAGCCTTGATGATGTACTTTGT 59.558 43.478 0.00 0.00 0.00 2.83
1494 4711 1.685224 GAGTTGGCCAGGATGTCCA 59.315 57.895 5.11 0.00 38.89 4.02
1563 4855 1.204704 CATGTACGTCTTGAGCTCCCA 59.795 52.381 12.15 0.00 0.00 4.37
1674 4993 6.238731 CGGGCAAGAAATTCATATAAAGCAGA 60.239 38.462 0.00 0.00 0.00 4.26
1786 5105 5.473066 AAATAGGTTGTGCATGCTTCTTT 57.527 34.783 20.33 2.97 0.00 2.52
1829 5183 6.882610 AAGATCAGCAATGTACAAACAGAA 57.117 33.333 0.00 0.00 39.49 3.02
1914 5308 3.173151 TGAAACAGATGTCCCAGCTAGA 58.827 45.455 0.00 0.00 0.00 2.43
1968 5702 7.826690 TGGAGCTAACAAATTTCCAAGTAATC 58.173 34.615 0.00 0.00 35.13 1.75
2041 5845 1.014044 ACGTCTACGCATGCCAACAG 61.014 55.000 13.15 4.17 44.43 3.16
2056 5860 3.644399 GAGCCCCAAGACGGACGTC 62.644 68.421 16.39 16.39 44.86 4.34
2057 5861 3.692406 GAGCCCCAAGACGGACGT 61.692 66.667 0.00 0.00 36.56 4.34
2058 5862 4.796231 CGAGCCCCAAGACGGACG 62.796 72.222 0.00 0.00 36.56 4.79
2059 5863 2.280823 CTACGAGCCCCAAGACGGAC 62.281 65.000 0.00 0.00 36.56 4.79
2060 5864 2.036098 TACGAGCCCCAAGACGGA 59.964 61.111 0.00 0.00 36.56 4.69
2061 5865 2.348888 ACTACGAGCCCCAAGACGG 61.349 63.158 0.00 0.00 0.00 4.79
2064 5868 1.541310 CCACACTACGAGCCCCAAGA 61.541 60.000 0.00 0.00 0.00 3.02
2068 5872 3.031417 ATGCCACACTACGAGCCCC 62.031 63.158 0.00 0.00 0.00 5.80
2069 5873 1.815421 CATGCCACACTACGAGCCC 60.815 63.158 0.00 0.00 0.00 5.19
2070 5874 2.464459 GCATGCCACACTACGAGCC 61.464 63.158 6.36 0.00 0.00 4.70
2071 5875 1.298157 TTGCATGCCACACTACGAGC 61.298 55.000 16.68 0.00 0.00 5.03
2073 5877 1.737236 GATTTGCATGCCACACTACGA 59.263 47.619 16.68 0.00 0.00 3.43
2074 5878 1.468127 TGATTTGCATGCCACACTACG 59.532 47.619 16.68 0.00 0.00 3.51
2076 5880 2.749076 GACTGATTTGCATGCCACACTA 59.251 45.455 16.68 0.00 0.00 2.74
2077 5881 1.542915 GACTGATTTGCATGCCACACT 59.457 47.619 16.68 0.00 0.00 3.55
2078 5882 1.403249 GGACTGATTTGCATGCCACAC 60.403 52.381 16.68 5.20 0.00 3.82
2079 5883 0.889994 GGACTGATTTGCATGCCACA 59.110 50.000 16.68 8.92 0.00 4.17
2081 5885 1.820519 GAAGGACTGATTTGCATGCCA 59.179 47.619 16.68 0.00 0.00 4.92
2083 5887 1.202222 CGGAAGGACTGATTTGCATGC 60.202 52.381 11.82 11.82 0.00 4.06
2103 7317 2.729028 TAGCTCCCCAATGCTTAACC 57.271 50.000 0.00 0.00 40.35 2.85
2143 7357 3.151554 TGCTTGTCTCATGAAATGTGCT 58.848 40.909 0.00 0.00 46.80 4.40
2240 7454 7.445096 CCAATGTGCTATCTGATTGGTTATACA 59.555 37.037 0.00 0.00 39.95 2.29
2498 7712 4.097741 TGGAATTGGTCTTGTTGTTCACTG 59.902 41.667 0.00 0.00 0.00 3.66
2499 7713 4.097892 GTGGAATTGGTCTTGTTGTTCACT 59.902 41.667 0.00 0.00 0.00 3.41
2547 7761 2.580962 TGCTCCATTGTGTTGTGCTTA 58.419 42.857 0.00 0.00 0.00 3.09
2558 7772 7.537715 TGTTTATTAGTGACATTGCTCCATTG 58.462 34.615 0.00 0.00 0.00 2.82
2559 7773 7.701539 TGTTTATTAGTGACATTGCTCCATT 57.298 32.000 0.00 0.00 0.00 3.16
2560 7774 7.886629 ATGTTTATTAGTGACATTGCTCCAT 57.113 32.000 0.00 0.00 30.22 3.41
2561 7775 8.978874 ATATGTTTATTAGTGACATTGCTCCA 57.021 30.769 0.00 0.00 35.72 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.